Query psy13208
Match_columns 120
No_of_seqs 141 out of 1286
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 22:54:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13208.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13208hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cbb_A HNF-4-alpha, hepatocyte 99.9 5E-25 1.7E-29 134.4 0.3 68 2-74 11-78 (78)
2 2ebl_A COUP transcription fact 99.9 5.7E-25 1.9E-29 137.1 0.6 70 2-76 18-87 (89)
3 1dsz_A RAR-alpha, retinoic aci 99.9 9.2E-25 3.1E-29 135.5 0.5 70 2-76 15-84 (86)
4 1dsz_B RXR-alpha, retinoic aci 99.9 9.1E-25 3.1E-29 135.2 0.2 69 2-75 16-84 (85)
5 2han_A Protein ultraspiracle; 99.9 1.3E-24 4.3E-29 136.6 -0.6 69 3-76 22-90 (93)
6 1hcq_A Protein (estrogen recep 99.9 2.3E-24 7.8E-29 133.1 0.4 68 2-74 15-82 (84)
7 1ynw_B Retinoic acid receptor 99.9 3E-24 1E-28 136.2 0.8 71 2-77 14-84 (99)
8 1a6y_A Orphan nuclear receptor 99.9 2.7E-24 9.2E-29 135.3 -0.1 71 2-77 18-89 (94)
9 3g9m_A Glucocorticoid receptor 99.9 6.6E-24 2.2E-28 132.7 0.5 71 2-77 13-83 (90)
10 1cit_A NGFI-B, protein (orphan 99.9 7.4E-24 2.5E-28 132.1 0.3 68 2-74 11-78 (89)
11 1lo1_A Steroid hormone recepto 99.9 6.1E-24 2.1E-28 134.6 -1.9 69 2-75 15-83 (98)
12 2a66_A Orphan nuclear receptor 99.9 2E-23 6.9E-28 135.2 -0.1 68 3-75 21-88 (113)
13 4hn5_A Glucocorticoid receptor 99.9 2.9E-23 1E-27 135.1 0.3 71 2-77 40-110 (117)
14 1kb2_A Vitamin D3 receptor; VD 99.9 5.6E-23 1.9E-27 132.6 0.9 69 2-75 17-85 (110)
15 2nll_B Protein (thyroid hormon 99.9 5.9E-23 2E-27 131.2 0.8 70 2-76 12-83 (103)
16 2han_B Ecdysone receptor; tran 99.8 7.9E-23 2.7E-27 133.6 -0.0 69 2-75 19-87 (119)
17 1r4i_A Androgen receptor; AR, 99.8 1.4E-22 4.8E-27 129.7 -0.2 68 3-75 19-86 (105)
18 3dzy_A Retinoic acid receptor 99.7 8.7E-20 3E-24 142.8 0.4 69 3-76 149-217 (467)
19 3dzy_D Peroxisome proliferator 99.7 7.8E-19 2.7E-23 135.8 1.1 69 2-77 61-130 (419)
20 2lze_A A primordial catalytic 99.6 9.6E-17 3.3E-21 99.2 1.3 61 3-70 16-76 (87)
21 3cbb_A HNF-4-alpha, hepatocyte 99.3 1E-12 3.4E-17 79.7 1.4 59 46-118 15-73 (78)
22 1dsz_B RXR-alpha, retinoic aci 99.2 1.8E-12 6.2E-17 79.8 1.5 59 46-118 20-78 (85)
23 1ynw_B Retinoic acid receptor 99.2 4.4E-12 1.5E-16 80.1 2.7 60 45-118 17-76 (99)
24 1hcq_A Protein (estrogen recep 99.2 2.1E-12 7.1E-17 79.4 0.8 59 46-118 19-77 (84)
25 1cit_A NGFI-B, protein (orphan 99.2 3.1E-12 1.1E-16 79.4 1.4 59 46-118 15-73 (89)
26 1dsz_A RAR-alpha, retinoic aci 99.2 3.1E-12 1.1E-16 78.9 1.3 59 46-118 19-77 (86)
27 2han_A Protein ultraspiracle; 99.2 3.8E-12 1.3E-16 79.6 1.3 59 46-118 25-83 (93)
28 2ebl_A COUP transcription fact 99.2 2.5E-12 8.5E-17 79.8 -0.2 59 46-118 22-80 (89)
29 3g9m_A Glucocorticoid receptor 99.1 5.9E-12 2E-16 78.3 0.3 59 46-118 17-75 (90)
30 4hn5_A Glucocorticoid receptor 99.1 1.2E-11 4E-16 80.3 1.7 59 46-118 44-102 (117)
31 1lo1_A Steroid hormone recepto 99.1 5.2E-12 1.8E-16 79.7 -0.1 60 45-118 18-77 (98)
32 1kb2_A Vitamin D3 receptor; VD 99.1 1.1E-11 3.7E-16 79.7 1.4 59 46-118 21-79 (110)
33 1a6y_A Orphan nuclear receptor 99.1 7.4E-12 2.5E-16 78.4 0.4 59 46-118 22-81 (94)
34 2a66_A Orphan nuclear receptor 99.1 1.1E-11 3.7E-16 80.0 1.1 59 46-118 24-82 (113)
35 1r4i_A Androgen receptor; AR, 99.1 1.1E-11 3.8E-16 79.0 1.0 59 46-118 22-80 (105)
36 2nll_B Protein (thyroid hormon 99.1 1.7E-11 6E-16 77.9 1.6 62 46-119 16-77 (103)
37 2han_B Ecdysone receptor; tran 99.1 2.2E-11 7.4E-16 79.3 1.2 60 46-119 23-82 (119)
38 2lze_A A primordial catalytic 98.8 7.7E-10 2.6E-14 68.2 1.6 38 78-117 37-74 (87)
39 3dzy_A Retinoic acid receptor 98.8 9E-10 3.1E-14 86.2 1.5 59 46-118 152-210 (467)
40 3dzy_D Peroxisome proliferator 98.7 5.4E-09 1.8E-13 80.7 1.5 58 45-118 64-122 (419)
41 1lbd_A RXR_LBD, retinoid X rec 93.2 0.015 5.3E-07 41.9 0.0 22 56-77 12-33 (282)
42 2kwq_A Protein MCM10 homolog; 28.2 29 0.00099 20.9 1.7 37 31-67 48-84 (92)
No 1
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=99.89 E-value=5e-25 Score=134.36 Aligned_cols=68 Identities=35% Similarity=0.737 Sum_probs=61.5
Q ss_pred CCccCCccCChhhhhcccceeeeccccCcceeccCCCCCccccCcccccccccccchhhhcccCchhhhhhhh
Q psy13208 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKN 74 (120)
Q Consensus 2 ~~~hygv~~C~~C~~ff~~ff~rsi~~~~~~~C~~g~~~C~i~~~~r~~C~~CR~~kCl~~gm~~~~v~~~r~ 74 (120)
+-+||||+||+||++ ||+|++..+..|.|.. +++|.|+...+..|++|||+|||++||++++||.+|+
T Consensus 11 ~g~hyGv~sC~aCk~----FFRR~v~~~~~y~C~~-~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~Rd 78 (78)
T 3cbb_A 11 TGKHYGASSCDGCKG----FFRRSVRKNHMYSCRF-SRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERD 78 (78)
T ss_dssp CSEETTEECCHHHHH----HHHHHHHTTCCCCCSS-CSCCCCSTTTTTTCHHHHHHHHHHHTCCGGGCCCC--
T ss_pred CceEeCCcchhhhce----eeeEEEecccCccccc-ccccCcCccccccChhhhhHHHhHcCCCHHHccccCC
Confidence 358999999999988 7889999889999995 7999999999999999999999999999999998875
No 2
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=99.89 E-value=5.7e-25 Score=137.09 Aligned_cols=70 Identities=36% Similarity=0.674 Sum_probs=64.6
Q ss_pred CCccCCccCChhhhhcccceeeeccccCcceeccCCCCCccccCcccccccccccchhhhcccCchhhhhhhhcc
Q psy13208 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSL 76 (120)
Q Consensus 2 ~~~hygv~~C~~C~~ff~~ff~rsi~~~~~~~C~~g~~~C~i~~~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~ 76 (120)
+-+||||++|+||++ ||||++..+..|.|.. +++|.|+...+..|++|||+|||++||.+++||.+|++.
T Consensus 18 ~g~hyGv~sC~aCk~----FFRR~v~~~~~y~C~~-~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~ 87 (89)
T 2ebl_A 18 SGKHYGQFTCEGCKS----FFKRSVRRNLTYTCRA-NRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGSGPS 87 (89)
T ss_dssp CSEETTEECCHHHHH----HHHHHHTTTCCCCCSS-CSCCCCCSSSSSCCSHHHHHHHHHHTCCHHHHSCSCCCC
T ss_pred cceEeCchhhHHhhh----hhheeeeeccceeccc-CccCCcCccCccccccchHHHhhhccCCHHHcccCCCCC
Confidence 358999999999988 7889999889999995 799999999999999999999999999999999999864
No 3
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=99.89 E-value=9.2e-25 Score=135.46 Aligned_cols=70 Identities=30% Similarity=0.667 Sum_probs=61.7
Q ss_pred CCccCCccCChhhhhcccceeeeccccCcceeccCCCCCccccCcccccccccccchhhhcccCchhhhhhhhcc
Q psy13208 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSL 76 (120)
Q Consensus 2 ~~~hygv~~C~~C~~ff~~ff~rsi~~~~~~~C~~g~~~C~i~~~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~ 76 (120)
+-+||||+||+||++ ||+|+++.+..|.|.. +++|.|+...+..|++|||+|||++||++++||.+|+++
T Consensus 15 ~g~hyGv~sC~aCk~----FFRR~v~~~~~y~C~~-~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~ 84 (86)
T 1dsz_A 15 SGYHYGVSACEGCKG----FFRRSIQKNMVYTCHR-DKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKK 84 (86)
T ss_dssp CSEETTEECCHHHHH----HHHHHHHTTCCCCCSS-CSCCCCSTTTGGGCHHHHHHHHHHTTCCGGGSCCC----
T ss_pred cceeeCchhHHHHHH----HHHHHhhcccceeecc-CCccccCccccccchhhhHHHHHHhCCCHHHhhhccccc
Confidence 458999999999988 7889999888999985 799999999999999999999999999999999999864
No 4
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=99.89 E-value=9.1e-25 Score=135.16 Aligned_cols=69 Identities=29% Similarity=0.680 Sum_probs=63.6
Q ss_pred CCccCCccCChhhhhcccceeeeccccCcceeccCCCCCccccCcccccccccccchhhhcccCchhhhhhhhc
Q psy13208 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNS 75 (120)
Q Consensus 2 ~~~hygv~~C~~C~~ff~~ff~rsi~~~~~~~C~~g~~~C~i~~~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~ 75 (120)
+-+||||.||+||++ ||+|++..+..|.|.. +++|.|+...+..|++|||+|||++||++++||.+|++
T Consensus 16 ~g~hyGv~sC~aCk~----FFRR~v~~~~~y~C~~-~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~ 84 (85)
T 1dsz_B 16 SGKHYGVYSCEGCKG----FFKRTVRKDLTYTCRD-NKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR 84 (85)
T ss_dssp SSEETTEECCHHHHH----HHHHHHHHTCCCCCSS-CSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCCCCC
T ss_pred CceeeCccchHHHHH----HHHHhhccccceeecc-cccccccccccccCcchhHHHHhHcCCCHHHhhcccCC
Confidence 358999999999988 7889998889999995 78999999999999999999999999999999999874
No 5
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=99.88 E-value=1.3e-24 Score=136.60 Aligned_cols=69 Identities=30% Similarity=0.688 Sum_probs=61.9
Q ss_pred CccCCccCChhhhhcccceeeeccccCcceeccCCCCCccccCcccccccccccchhhhcccCchhhhhhhhcc
Q psy13208 3 FRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSL 76 (120)
Q Consensus 3 ~~hygv~~C~~C~~ff~~ff~rsi~~~~~~~C~~g~~~C~i~~~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~ 76 (120)
-+||||.+|+||++ ||+|++..+..|.|.. +++|.|+...+..|++|||+|||++||++++||.+|++.
T Consensus 22 g~hyGv~sC~aCk~----FFRR~v~~~~~y~C~~-~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~ 90 (93)
T 2han_A 22 GKHYGVYSCEGCKG----FFKRTVRKDLTYACRE-NRNCIIDKRQRNRCQYCRYQKCLTCGMKREAVQEERQGI 90 (93)
T ss_dssp EEETTEEECHHHHH----HHHHHHHHTCCCCCSS-CSCCCCSTTTGGGCHHHHHHHHHHHTCCGGGSCCCC---
T ss_pred CeecCcchhHHHHH----HHHhhhccccCcCcCC-CCcCCcCCCCCccCccccHHHHhHhCCCHHHhhhccCcc
Confidence 57999999999988 7889998888999995 799999999999999999999999999999999999854
No 6
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=99.88 E-value=2.3e-24 Score=133.08 Aligned_cols=68 Identities=32% Similarity=0.611 Sum_probs=55.9
Q ss_pred CCccCCccCChhhhhcccceeeeccccCcceeccCCCCCccccCcccccccccccchhhhcccCchhhhhhhh
Q psy13208 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKN 74 (120)
Q Consensus 2 ~~~hygv~~C~~C~~ff~~ff~rsi~~~~~~~C~~g~~~C~i~~~~r~~C~~CR~~kCl~~gm~~~~v~~~r~ 74 (120)
+-+||||+||+||++ ||||+++.+..|.|.. +++|.|+...+..|++|||+|||++||++++||.+|.
T Consensus 15 ~g~hyGv~sC~aCk~----FFRR~v~~~~~y~C~~-~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 82 (84)
T 1hcq_A 15 SGYHYGVWSCEGCKA----FFKRSIQGHNDYMCPA-TNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDRR 82 (84)
T ss_dssp CEEETTEEECHHHHH----HHHHHHSSCCCCCCSS-SSCCCCSTTTTTTCHHHHHHHHHHHTCCC--------
T ss_pred CCeeeCccchHHhhh----hhhhcccccccccccc-CccCCcCCcCcccChhhhhHHHhHcCCCHHHhcccCC
Confidence 358999999999988 7889999899999995 7999999999999999999999999999999998874
No 7
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=99.88 E-value=3e-24 Score=136.25 Aligned_cols=71 Identities=28% Similarity=0.631 Sum_probs=59.8
Q ss_pred CCccCCccCChhhhhcccceeeeccccCcceeccCCCCCccccCcccccccccccchhhhcccCchhhhhhhhccc
Q psy13208 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLL 77 (120)
Q Consensus 2 ~~~hygv~~C~~C~~ff~~ff~rsi~~~~~~~C~~g~~~C~i~~~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~~ 77 (120)
+-+||||.+|+||++ ||||++..+..|.|.. +++|.|+...+..|++|||+|||++||.+++||.+|++..
T Consensus 14 ~g~hyGv~sC~aCk~----FFRR~v~~~~~y~C~~-~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~~ 84 (99)
T 1ynw_B 14 SGKHYGVYSCEGCKG----FFKRTVRKDLTYTCRD-NKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGK 84 (99)
T ss_dssp CBCCTTSCBCSHHHH----HHHHHHHTTCCCCCSS-SSCCCCCSTTSSSCHHHHHHHHHHTTCCSTTCC-------
T ss_pred cceeeCccchHHHHH----HHHhhhccccccccCC-CCcccccccCCccCccccHHHHhHcCCCHHHhhhcccccc
Confidence 358999999999988 7889999889999995 7899999999999999999999999999999999998643
No 8
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=99.88 E-value=2.7e-24 Score=135.34 Aligned_cols=71 Identities=27% Similarity=0.525 Sum_probs=61.7
Q ss_pred CCccCCccCChhhhhcccceeeeccccCcce-eccCCCCCccccCcccccccccccchhhhcccCchhhhhhhhccc
Q psy13208 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQ-ACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLL 77 (120)
Q Consensus 2 ~~~hygv~~C~~C~~ff~~ff~rsi~~~~~~-~C~~g~~~C~i~~~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~~ 77 (120)
+-+||||+||+||++ ||+|++..+..| .|.. +++|.|+...+..|++|||+|||++||++++||.+|+|..
T Consensus 18 ~g~hyGv~sC~aCk~----FFRR~v~~~~~y~~C~~-~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~~ 89 (94)
T 1a6y_A 18 SGFHYGVLACEGCKG----FFRRSIQQNIQYKRCLK-NENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKR 89 (94)
T ss_dssp CEEETTEEECHHHHH----HHHHHHSSCCCCCCCSS-TTCCCCCTTTTTSCHHHHHHHHTTTTCCSTTCCCCC----
T ss_pred cceEeCccchhhhhh----ehheeeecccceEEccC-CCCCccCccccccccchhHHHhhHccCCHHHhccCcCcCc
Confidence 358999999999988 788999888888 5985 7999999999999999999999999999999999998654
No 9
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=99.87 E-value=6.6e-24 Score=132.75 Aligned_cols=71 Identities=28% Similarity=0.541 Sum_probs=62.5
Q ss_pred CCccCCccCChhhhhcccceeeeccccCcceeccCCCCCccccCcccccccccccchhhhcccCchhhhhhhhccc
Q psy13208 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLL 77 (120)
Q Consensus 2 ~~~hygv~~C~~C~~ff~~ff~rsi~~~~~~~C~~g~~~C~i~~~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~~ 77 (120)
+-+||||.+|+||++ ||+|++..+..|.|.. +++|.|+...+..|++|||+|||++||++++||.+++.+.
T Consensus 13 ~g~hyGv~sC~~Ck~----FFRR~v~~~~~~~C~~-~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~avq~~r~~~~ 83 (90)
T 3g9m_A 13 SGCHYGVLTCGSCKV----FFKRAVEGQHNYLCAG-RNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIKG 83 (90)
T ss_dssp CEEETTEEECHHHHH----HHHHHHHSCCCCCCSS-SSCCCCCTTGGGTCHHHHHHHHHHHTCCTTHHHHHC----
T ss_pred cccccCCccchhHhH----HhhhhhhcCCceeCCC-CCccccCcccccCCcchhhHHHHHcCCCHHHhcccccccc
Confidence 358999999999988 7889999999999985 7999999999999999999999999999999999987543
No 10
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=99.87 E-value=7.4e-24 Score=132.10 Aligned_cols=68 Identities=31% Similarity=0.594 Sum_probs=62.4
Q ss_pred CCccCCccCChhhhhcccceeeeccccCcceeccCCCCCccccCcccccccccccchhhhcccCchhhhhhhh
Q psy13208 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKN 74 (120)
Q Consensus 2 ~~~hygv~~C~~C~~ff~~ff~rsi~~~~~~~C~~g~~~C~i~~~~r~~C~~CR~~kCl~~gm~~~~v~~~r~ 74 (120)
+-+||||.||+||++ ||+|++..+..|.|.. +++|.|+...+..|++|||+|||++||++++||.++.
T Consensus 11 ~g~hyGv~sC~aCk~----FFRR~v~~~~~y~C~~-~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~~~ 78 (89)
T 1cit_A 11 SCQHYGVRTCEGCKG----FFKRTVQKSAKYICLA-NKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSL 78 (89)
T ss_dssp CEEETTEEECHHHHH----HHHHHHHHTCCCCCSS-SSCCCCSTTTTTTCHHHHHHHHHHTTCCGGGSCCGGG
T ss_pred cceEeCccchhhhhh----hceeeEEecceeeecc-CCccccCCCCcccChhhhhHHHhHcCCCHHHeecccc
Confidence 358999999999988 7889998888999995 7999999999999999999999999999999998765
No 11
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=99.86 E-value=6.1e-24 Score=134.57 Aligned_cols=69 Identities=30% Similarity=0.524 Sum_probs=63.4
Q ss_pred CCccCCccCChhhhhcccceeeeccccCcceeccCCCCCccccCcccccccccccchhhhcccCchhhhhhhhc
Q psy13208 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNS 75 (120)
Q Consensus 2 ~~~hygv~~C~~C~~ff~~ff~rsi~~~~~~~C~~g~~~C~i~~~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~ 75 (120)
+-+||||++|+||++ ||+|++..+..|.|.. +++|.|+...+..|++|||+|||++||++++||.+|++
T Consensus 15 ~g~hyGv~sC~aCk~----FFRR~v~~~~~y~C~~-~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~ 83 (98)
T 1lo1_A 15 SGYHYGVASCEACKA----FFKRTIQGNIEYSCPA-TNECEITKRRRKSCQACRFMKALKVGMLKEGVRLDRVR 83 (98)
T ss_dssp SEESSSSEECHHHHH----HHHHHHHTTCCCCCSS-CSCCCCCHHHHHHCHHHHHHHHHHHTCCGGGSCSSCCT
T ss_pred cCeeeCccchhhhhh----hheeeecccCccccCc-cccccccccccccccchhHHHHhHcCCCHHHeeccccc
Confidence 358999999999988 7889999889999995 78999999999999999999999999999999998874
No 12
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=99.86 E-value=2e-23 Score=135.17 Aligned_cols=68 Identities=25% Similarity=0.576 Sum_probs=63.2
Q ss_pred CccCCccCChhhhhcccceeeeccccCcceeccCCCCCccccCcccccccccccchhhhcccCchhhhhhhhc
Q psy13208 3 FRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNS 75 (120)
Q Consensus 3 ~~hygv~~C~~C~~ff~~ff~rsi~~~~~~~C~~g~~~C~i~~~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~ 75 (120)
-+||||.||+||++ ||+|++..+..|.|.. +++|.|+...+..|++|||+|||++||++++||.+|++
T Consensus 21 G~HyGv~sC~aCk~----FFRR~v~~~~~y~C~~-~~~C~i~~~~R~~Cr~CR~~KCl~vGM~~~~vq~~R~~ 88 (113)
T 2a66_A 21 GYHYGLLTCESCKG----FFKRTVQNNKRYTCIE-NQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMR 88 (113)
T ss_dssp EEETTEEEEHHHHH----HHHHHHHTTCCCCCSS-CSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCTTCCC
T ss_pred ceeeCcccHHHHHH----HHhhhhhccccccccc-cccCCcCCCccccccchhHHHHhHhCCCHHHhcccccc
Confidence 47999999999988 7889999889999995 79999999999999999999999999999999999874
No 13
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=99.86 E-value=2.9e-23 Score=135.09 Aligned_cols=71 Identities=28% Similarity=0.541 Sum_probs=57.7
Q ss_pred CCccCCccCChhhhhcccceeeeccccCcceeccCCCCCccccCcccccccccccchhhhcccCchhhhhhhhccc
Q psy13208 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLL 77 (120)
Q Consensus 2 ~~~hygv~~C~~C~~ff~~ff~rsi~~~~~~~C~~g~~~C~i~~~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~~ 77 (120)
+-+||||.+|+||++ ||||++..+..|.|.. +++|.|+...+..|++|||+|||++||.+++||.+++.+.
T Consensus 40 ~G~HyGv~sC~aCk~----FFRRsv~~~~~y~C~~-~~~C~i~~~~r~~Cr~CRl~KCl~vGM~~~avq~kR~~k~ 110 (117)
T 4hn5_A 40 SGCHYGVLTCGSCKV----FFKRAVEGQHNYLCAG-RNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIKG 110 (117)
T ss_dssp CEEETTEEECHHHHH----HHHHHHSSCCCCCCSS-SSCCCCSTTTTTTCHHHHHHHHHHHTCCTTC---------
T ss_pred cccccCCcccchhhh----hhhcceecCCceecCC-CCccccCcccccCCcccchHHHhHcCCCHHHhcccccccc
Confidence 358999999999988 7889999999999985 7999999999999999999999999999999999987543
No 14
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=99.85 E-value=5.6e-23 Score=132.63 Aligned_cols=69 Identities=29% Similarity=0.525 Sum_probs=62.6
Q ss_pred CCccCCccCChhhhhcccceeeeccccCcceeccCCCCCccccCcccccccccccchhhhcccCchhhhhhhhc
Q psy13208 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNS 75 (120)
Q Consensus 2 ~~~hygv~~C~~C~~ff~~ff~rsi~~~~~~~C~~g~~~C~i~~~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~ 75 (120)
+-+||||.+|+||++ ||+|++..+..|.|.. +++|.|+...+..|++|||+|||++||.+++|+.++..
T Consensus 17 ~g~hyGv~sC~aCk~----FFRR~v~~~~~y~C~~-~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~v~~~r~~ 85 (110)
T 1kb2_A 17 TGFHFNAMTCEGCKG----FFRRSMKRKALFTCPF-NGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEV 85 (110)
T ss_dssp CSEETTEECCHHHHH----HHHHHHHTTCCCCCSS-CSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCHHHH
T ss_pred CceEeCchhHhhhhh----hheeeeecccceeeCC-CCCccCCcccceecccccHhhhhhcCCcHHhcccHHHH
Confidence 358999999999988 7889998889999995 79999999999999999999999999999988877764
No 15
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=99.85 E-value=5.9e-23 Score=131.18 Aligned_cols=70 Identities=33% Similarity=0.622 Sum_probs=62.9
Q ss_pred CCccCCccCChhhhhcccceeeeccccCc--ceeccCCCCCccccCcccccccccccchhhhcccCchhhhhhhhcc
Q psy13208 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQ--CQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSL 76 (120)
Q Consensus 2 ~~~hygv~~C~~C~~ff~~ff~rsi~~~~--~~~C~~g~~~C~i~~~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~ 76 (120)
+-+||||+||+||++ ||+|++..+. .|.|.. +++|.|+...+..|++|||+|||++||.+++|+.++++.
T Consensus 12 ~g~hyGv~sC~aCk~----FFRR~v~~~~~~~y~C~~-~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~~~~~ 83 (103)
T 2nll_B 12 TGYHYRCITCEGCKG----FFRRTIQKNLHPSYSCKY-EGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRL 83 (103)
T ss_dssp CSEETTEECCHHHHH----HHHHHHHTTCGGGCCCSS-CTTCCCSTTTTTSCHHHHHHHHHHTTCCGGGSCCHHHHH
T ss_pred cCeecCcccHHHhhh----hheecccccccchhhhhc-cCCcCcCccCccccchhhhHhhhHhCCCHHHhhhhhhhH
Confidence 458999999999988 7888988765 799985 799999999999999999999999999999999988753
No 16
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=99.84 E-value=7.9e-23 Score=133.64 Aligned_cols=69 Identities=25% Similarity=0.462 Sum_probs=62.9
Q ss_pred CCccCCccCChhhhhcccceeeeccccCcceeccCCCCCccccCcccccccccccchhhhcccCchhhhhhhhc
Q psy13208 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNS 75 (120)
Q Consensus 2 ~~~hygv~~C~~C~~ff~~ff~rsi~~~~~~~C~~g~~~C~i~~~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~ 75 (120)
+-+||||.+|+||++ ||+|++..+..|.|.. +++|.|+...+..|++|||+|||++||++++|+.+++.
T Consensus 19 ~g~hyGv~sC~aCk~----FFRR~v~~~~~y~C~~-~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~~ 87 (119)
T 2han_B 19 SGYHYNALTCEGCKG----FFRRSVTKSAVYCCKF-GRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQC 87 (119)
T ss_dssp CEEETTEEECHHHHH----HHHHHHHTTCCCCCSS-CSCCCCSTTGGGTCHHHHHHHHHHTTCCGGGSSCSSHH
T ss_pred CcceECchhHHhhHH----hhhhheEecccccccc-ccccccCccccccchhhHHHHHHHhCCCHHHccchhhh
Confidence 358999999999988 7889998888999995 68999999999999999999999999999999987763
No 17
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=99.84 E-value=1.4e-22 Score=129.72 Aligned_cols=68 Identities=28% Similarity=0.523 Sum_probs=57.1
Q ss_pred CccCCccCChhhhhcccceeeeccccCcceeccCCCCCccccCcccccccccccchhhhcccCchhhhhhhhc
Q psy13208 3 FRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNS 75 (120)
Q Consensus 3 ~~hygv~~C~~C~~ff~~ff~rsi~~~~~~~C~~g~~~C~i~~~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~ 75 (120)
-+||||.+|+||++ ||||++..+..|.|.. +++|.|+...+..|++|||+|||++||++++++..+.+
T Consensus 19 g~hyGv~sC~aCk~----FFRR~v~~~~~y~C~~-~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~~k~~k~~ 86 (105)
T 1r4i_A 19 GAHYGALTCGSCKV----FFKRAAEGKQKYLCAS-RNDCTIDKFRRKNCPSCRLRKCYEAGMTLGARKLKKLG 86 (105)
T ss_dssp EEETTEEEEHHHHH----HHHHHHTSCCCCCCSS-SSCCCCCTTTTTTCHHHHHHHHHHHTCCSCC-------
T ss_pred ceEeCCcchhhhhh----hhceeEEecCceeecc-CCccccCccccccchhchHHHHHhhhcccchhhhcccc
Confidence 47999999999988 7889999889999985 78999999999999999999999999999998877653
No 18
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=99.75 E-value=8.7e-20 Score=142.80 Aligned_cols=69 Identities=29% Similarity=0.652 Sum_probs=63.7
Q ss_pred CccCCccCChhhhhcccceeeeccccCcceeccCCCCCccccCcccccccccccchhhhcccCchhhhhhhhcc
Q psy13208 3 FRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSL 76 (120)
Q Consensus 3 ~~hygv~~C~~C~~ff~~ff~rsi~~~~~~~C~~g~~~C~i~~~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~ 76 (120)
-+||||.+|+|||+ ||||+++++..|.|.. +++|.+++..|+.|++|||+||+++||..++||.+|++.
T Consensus 149 g~hygv~sC~~Ck~----FFrR~~~~~~~~~C~~-~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~~ 217 (467)
T 3dzy_A 149 GKHYGVYSCEGCKG----FFKRTVRKDLTYTCRD-NKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG 217 (467)
T ss_dssp SEETTEECCHHHHH----HHHHHHHTTCCCCCSS-SSCCCCCSSSSSSCHHHHHHHHHHTTCCGGGCCCCSCCC
T ss_pred CCcCCCcchhhhhH----hccccccCCCceeCCC-CCCCCCCcccccccccchhhhhhhccccchhhhcccccc
Confidence 58999999999987 7889999999999995 799999999999999999999999999999999988754
No 19
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=99.71 E-value=7.8e-19 Score=135.79 Aligned_cols=69 Identities=25% Similarity=0.484 Sum_probs=61.0
Q ss_pred CCccCCccCChhhhhcccceeeeccccCccee-ccCCCCCccccCcccccccccccchhhhcccCchhhhhhhhccc
Q psy13208 2 TFRHDGMTDHPTCQAGTERCIVDKAHRNQCQA-CQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLL 77 (120)
Q Consensus 2 ~~~hygv~~C~~C~~ff~~ff~rsi~~~~~~~-C~~g~~~C~i~~~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~~ 77 (120)
.-+||||.+|+|||+ ||||++..+..|. |. ++|.+++..++.|++|||+||+++||++++||.+|++..
T Consensus 61 ~g~hygv~~C~~C~~----FFrR~~~~~~~~~~c~---~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~vq~~R~~~~ 130 (419)
T 3dzy_D 61 SGFHYGVHACEGCKG----FFRRTIRLKLIYDRCD---LNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQA 130 (419)
T ss_dssp CSBCSSSBCCHHHHH----HHHHHHTTTCCCCCCC---SCCCCCTTGGGTCHHHHHHHHHHTTCCGGGCCCSCCTTT
T ss_pred CCCccCcccchhhhH----HHccchhccccccccc---CCCCcccccCccchhhhHHHHhhcccchhheeccccccc
Confidence 358999999999987 7888998888775 53 689999999999999999999999999999999997654
No 20
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=99.61 E-value=9.6e-17 Score=99.21 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=51.9
Q ss_pred CccCCccCChhhhhcccceeeeccccCcceeccCCCCCccccCcccccccccccchhhhcccCchhhh
Q psy13208 3 FRHDGMTDHPTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQ 70 (120)
Q Consensus 3 ~~hygv~~C~~C~~ff~~ff~rsi~~~~~~~C~~g~~~C~i~~~~r~~C~~CR~~kCl~~gm~~~~v~ 70 (120)
..||++. |.+|++ ||+|++ ++..|.|+. +++|.|++..++.|++|||+|||+|||....+.
T Consensus 16 g~h~c~v-Cgd~as----fFRRt~-~~~~y~C~~-~~~C~i~~~~R~~C~~CR~qKCl~VgM~~~~~~ 76 (87)
T 2lze_A 16 GKHICAI-CGNNAE----DYKHTD-MDLTYTDRD-YKNCESYHKCSDLCQYCRYQKDLAIHHQHHHGG 76 (87)
T ss_dssp CSSSCSS-SSSSSS----SCTTTT-TSCTTTSCC-CCCCCCSSCCSSSCSGGGTSCCHHHHCSSCCCC
T ss_pred CCEEccC-CCCccc----eECccc-CCCeeEcCC-CCccccCCCccCcCCcccChhhccCcCEeccCc
Confidence 4689987 999988 556664 567899985 799999999999999999999999999876544
No 21
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=99.26 E-value=1e-12 Score=79.75 Aligned_cols=59 Identities=36% Similarity=0.835 Sum_probs=51.2
Q ss_pred cccccccccccchhhhcccCchhhhhhhhccchhcccccccccceeccccccccChhhhHHHHHHhcCCcCCc
Q psy13208 46 AHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDGK 118 (120)
Q Consensus 46 ~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~~~~~~c~~~~~~~c~i~~~~r~~C~~CRl~Kcl~~gm~~~~~ 118 (120)
.+...|.+|. ++++++++.... |.|.. .++|.|+...++.|++|||+|||++||++++|
T Consensus 15 yGv~sC~aCk-------~FFRR~v~~~~~-----y~C~~--~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 73 (78)
T 3cbb_A 15 YGASSCDGCK-------GFFRRSVRKNHM-----YSCRF--SRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAV 73 (78)
T ss_dssp TTEECCHHHH-------HHHHHHHHTTCC-----CCCSS--CSCCCCSTTTTTTCHHHHHHHHHHHTCCGGGC
T ss_pred eCCcchhhhc-------eeeeEEEecccC-----ccccc--ccccCcCccccccChhhhhHHHhHcCCCHHHc
Confidence 4457899999 999988886544 88874 57899999999999999999999999999876
No 22
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=99.23 E-value=1.8e-12 Score=79.80 Aligned_cols=59 Identities=34% Similarity=0.834 Sum_probs=51.3
Q ss_pred cccccccccccchhhhcccCchhhhhhhhccchhcccccccccceeccccccccChhhhHHHHHHhcCCcCCc
Q psy13208 46 AHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDGK 118 (120)
Q Consensus 46 ~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~~~~~~c~~~~~~~c~i~~~~r~~C~~CRl~Kcl~~gm~~~~~ 118 (120)
.+...|.+|. +++++.++.+.. |.|.. .++|.|+...++.|++|||+|||++||++++|
T Consensus 20 yGv~sC~aCk-------~FFRR~v~~~~~-----y~C~~--~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 78 (85)
T 1dsz_B 20 YGVYSCEGCK-------GFFKRTVRKDLT-----YTCRD--NKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 78 (85)
T ss_dssp TTEECCHHHH-------HHHHHHHHHTCC-----CCCSS--CSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGS
T ss_pred eCccchHHHH-------HHHHHhhccccc-----eeecc--cccccccccccccCcchhHHHHhHcCCCHHHh
Confidence 4457899999 999999886654 88975 57899999999999999999999999999876
No 23
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=99.21 E-value=4.4e-12 Score=80.14 Aligned_cols=60 Identities=33% Similarity=0.823 Sum_probs=52.0
Q ss_pred CcccccccccccchhhhcccCchhhhhhhhccchhcccccccccceeccccccccChhhhHHHHHHhcCCcCCc
Q psy13208 45 KAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDGK 118 (120)
Q Consensus 45 ~~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~~~~~~c~~~~~~~c~i~~~~r~~C~~CRl~Kcl~~gm~~~~~ 118 (120)
..+...|.+|. +++++.++.+.. |.|.. .++|.|+...++.|++|||+|||++||++++|
T Consensus 17 hyGv~sC~aCk-------~FFRR~v~~~~~-----y~C~~--~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 76 (99)
T 1ynw_B 17 HYGVYSCEGCK-------GFFKRTVRKDLT-----YTCRD--NKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 76 (99)
T ss_dssp CTTSCBCSHHH-------HHHHHHHHTTCC-----CCCSS--SSCCCCCSTTSSSCHHHHHHHHHHTTCCSTTC
T ss_pred eeCccchHHHH-------HHHHhhhccccc-----cccCC--CCcccccccCCccCccccHHHHhHcCCCHHHh
Confidence 34567999999 999999886654 88975 57899999999999999999999999999876
No 24
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=99.20 E-value=2.1e-12 Score=79.37 Aligned_cols=59 Identities=36% Similarity=0.780 Sum_probs=48.8
Q ss_pred cccccccccccchhhhcccCchhhhhhhhccchhcccccccccceeccccccccChhhhHHHHHHhcCCcCCc
Q psy13208 46 AHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDGK 118 (120)
Q Consensus 46 ~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~~~~~~c~~~~~~~c~i~~~~r~~C~~CRl~Kcl~~gm~~~~~ 118 (120)
.+...|.+|. ++++++++.... |.|.. .++|.|+...++.|++|||+|||++||++++|
T Consensus 19 yGv~sC~aCk-------~FFRR~v~~~~~-----y~C~~--~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 77 (84)
T 1hcq_A 19 YGVWSCEGCK-------AFFKRSIQGHND-----YMCPA--TNQCTIDKNRRKSCQACRLRKCYEVGMMKGGI 77 (84)
T ss_dssp TTEEECHHHH-------HHHHHHHSSCCC-----CCCSS--SSCCCCSTTTTTTCHHHHHHHHHHHTCCC---
T ss_pred eCccchHHhh-------hhhhhccccccc-----ccccc--CccCCcCCcCcccChhhhhHHHhHcCCCHHHh
Confidence 3457899999 999988887654 88875 57899999999999999999999999999876
No 25
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=99.20 E-value=3.1e-12 Score=79.36 Aligned_cols=59 Identities=37% Similarity=0.771 Sum_probs=51.2
Q ss_pred cccccccccccchhhhcccCchhhhhhhhccchhcccccccccceeccccccccChhhhHHHHHHhcCCcCCc
Q psy13208 46 AHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDGK 118 (120)
Q Consensus 46 ~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~~~~~~c~~~~~~~c~i~~~~r~~C~~CRl~Kcl~~gm~~~~~ 118 (120)
.+...|.+|. ++++++++.... |.|.. .++|.|+...++.|++|||+|||++||++++|
T Consensus 15 yGv~sC~aCk-------~FFRR~v~~~~~-----y~C~~--~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 73 (89)
T 1cit_A 15 YGVRTCEGCK-------GFFKRTVQKSAK-----YICLA--NKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVV 73 (89)
T ss_dssp TTEEECHHHH-------HHHHHHHHHTCC-----CCCSS--SSCCCCSTTTTTTCHHHHHHHHHHTTCCGGGS
T ss_pred eCccchhhhh-------hhceeeEEecce-----eeecc--CCccccCCCCcccChhhhhHHHhHcCCCHHHe
Confidence 4457899999 999999887654 88874 57899999999999999999999999998876
No 26
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=99.20 E-value=3.1e-12 Score=78.93 Aligned_cols=59 Identities=34% Similarity=0.836 Sum_probs=51.2
Q ss_pred cccccccccccchhhhcccCchhhhhhhhccchhcccccccccceeccccccccChhhhHHHHHHhcCCcCCc
Q psy13208 46 AHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDGK 118 (120)
Q Consensus 46 ~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~~~~~~c~~~~~~~c~i~~~~r~~C~~CRl~Kcl~~gm~~~~~ 118 (120)
.+...|.+|. ++++++++.... |.|.. .++|.|+...++.|++|||+|||++||++++|
T Consensus 19 yGv~sC~aCk-------~FFRR~v~~~~~-----y~C~~--~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 77 (86)
T 1dsz_A 19 YGVSACEGCK-------GFFRRSIQKNMV-----YTCHR--DKNCIINKVTRNRCQYCRLQKCFEVGMSKESV 77 (86)
T ss_dssp TTEECCHHHH-------HHHHHHHHTTCC-----CCCSS--CSCCCCSTTTGGGCHHHHHHHHHHTTCCGGGS
T ss_pred eCchhHHHHH-------HHHHHHhhcccc-----eeecc--CCccccCccccccchhhhHHHHHHhCCCHHHh
Confidence 4457899999 999988886654 88874 57899999999999999999999999999876
No 27
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=99.18 E-value=3.8e-12 Score=79.58 Aligned_cols=59 Identities=36% Similarity=0.821 Sum_probs=51.2
Q ss_pred cccccccccccchhhhcccCchhhhhhhhccchhcccccccccceeccccccccChhhhHHHHHHhcCCcCCc
Q psy13208 46 AHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDGK 118 (120)
Q Consensus 46 ~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~~~~~~c~~~~~~~c~i~~~~r~~C~~CRl~Kcl~~gm~~~~~ 118 (120)
.+...|.+|. +++++.++.+.. |.|.. .++|.|+...++.|++|||+|||++||++++|
T Consensus 25 yGv~sC~aCk-------~FFRR~v~~~~~-----y~C~~--~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 83 (93)
T 2han_A 25 YGVYSCEGCK-------GFFKRTVRKDLT-----YACRE--NRNCIIDKRQRNRCQYCRYQKCLTCGMKREAV 83 (93)
T ss_dssp TTEEECHHHH-------HHHHHHHHHTCC-----CCCSS--CSCCCCSTTTGGGCHHHHHHHHHHHTCCGGGS
T ss_pred cCcchhHHHH-------HHHHhhhccccC-----cCcCC--CCcCCcCCCCCccCccccHHHHhHhCCCHHHh
Confidence 4457899999 999988886654 88975 57899999999999999999999999999876
No 28
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=99.16 E-value=2.5e-12 Score=79.81 Aligned_cols=59 Identities=36% Similarity=0.818 Sum_probs=50.5
Q ss_pred cccccccccccchhhhcccCchhhhhhhhccchhcccccccccceeccccccccChhhhHHHHHHhcCCcCCc
Q psy13208 46 AHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDGK 118 (120)
Q Consensus 46 ~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~~~~~~c~~~~~~~c~i~~~~r~~C~~CRl~Kcl~~gm~~~~~ 118 (120)
.+...|.+|. +++++.++.... |.|.. .++|.|+...++.|++|||+|||++||++++|
T Consensus 22 yGv~sC~aCk-------~FFRR~v~~~~~-----y~C~~--~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 80 (89)
T 2ebl_A 22 YGQFTCEGCK-------SFFKRSVRRNLT-----YTCRA--NRNCPIDQHHRNQCQYCRLKKCLKVGMRREAV 80 (89)
T ss_dssp TTEECCHHHH-------HHHHHHHTTTCC-----CCCSS--CSCCCCCSSSSSCCSHHHHHHHHHHTCCHHHH
T ss_pred eCchhhHHhh-------hhhheeeeeccc-----eeccc--CccCCcCccCccccccchHHHhhhccCCHHHc
Confidence 4457899999 999888876544 88874 57899999999999999999999999998765
No 29
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=99.13 E-value=5.9e-12 Score=78.33 Aligned_cols=59 Identities=34% Similarity=0.757 Sum_probs=50.2
Q ss_pred cccccccccccchhhhcccCchhhhhhhhccchhcccccccccceeccccccccChhhhHHHHHHhcCCcCCc
Q psy13208 46 AHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDGK 118 (120)
Q Consensus 46 ~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~~~~~~c~~~~~~~c~i~~~~r~~C~~CRl~Kcl~~gm~~~~~ 118 (120)
.+...|.+|. ++++++++.... |.|.. .++|.|+...++.|++|||+|||++||++++|
T Consensus 17 yGv~sC~~Ck-------~FFRR~v~~~~~-----~~C~~--~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~av 75 (90)
T 3g9m_A 17 YGVLTCGSCK-------VFFKRAVEGQHN-----YLCAG--RNDCIIDKIRRKNCPACRYRKCLQAGMNLEAR 75 (90)
T ss_dssp TTEEECHHHH-------HHHHHHHHSCCC-----CCCSS--SSCCCCCTTGGGTCHHHHHHHHHHHTCCTTHH
T ss_pred cCCccchhHh-------HHhhhhhhcCCc-----eeCCC--CCccccCcccccCCcchhhHHHHHcCCCHHHh
Confidence 3456899998 888888876655 78874 57899999999999999999999999999876
No 30
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=99.13 E-value=1.2e-11 Score=80.28 Aligned_cols=59 Identities=34% Similarity=0.757 Sum_probs=49.9
Q ss_pred cccccccccccchhhhcccCchhhhhhhhccchhcccccccccceeccccccccChhhhHHHHHHhcCCcCCc
Q psy13208 46 AHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDGK 118 (120)
Q Consensus 46 ~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~~~~~~c~~~~~~~c~i~~~~r~~C~~CRl~Kcl~~gm~~~~~ 118 (120)
.+...|.+|. ++++++++.... |.|.. .++|.|+...++.|++|||+|||++||++++|
T Consensus 44 yGv~sC~aCk-------~FFRRsv~~~~~-----y~C~~--~~~C~i~~~~r~~Cr~CRl~KCl~vGM~~~av 102 (117)
T 4hn5_A 44 YGVLTCGSCK-------VFFKRAVEGQHN-----YLCAG--RNDCIIDKIRRKNCPACRYRKCLQAGMNLEAR 102 (117)
T ss_dssp TTEEECHHHH-------HHHHHHHSSCCC-----CCCSS--SSCCCCSTTTTTTCHHHHHHHHHHHTCCTTC-
T ss_pred cCCcccchhh-------hhhhcceecCCc-----eecCC--CCccccCcccccCCcccchHHHhHcCCCHHHh
Confidence 4456899999 888888876655 78874 57899999999999999999999999999886
No 31
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=99.13 E-value=5.2e-12 Score=79.67 Aligned_cols=60 Identities=33% Similarity=0.671 Sum_probs=52.0
Q ss_pred CcccccccccccchhhhcccCchhhhhhhhccchhcccccccccceeccccccccChhhhHHHHHHhcCCcCCc
Q psy13208 45 KAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDGK 118 (120)
Q Consensus 45 ~~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~~~~~~c~~~~~~~c~i~~~~r~~C~~CRl~Kcl~~gm~~~~~ 118 (120)
..+...|.+|. ++++++++.... |.|.. .++|.|+...++.|++|||+|||++||++++|
T Consensus 18 hyGv~sC~aCk-------~FFRR~v~~~~~-----y~C~~--~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 77 (98)
T 1lo1_A 18 HYGVASCEACK-------AFFKRTIQGNIE-----YSCPA--TNECEITKRRRKSCQACRFMKALKVGMLKEGV 77 (98)
T ss_dssp SSSSEECHHHH-------HHHHHHHHTTCC-----CCCSS--CSCCCCCHHHHHHCHHHHHHHHHHHTCCGGGS
T ss_pred eeCccchhhhh-------hhheeeecccCc-----cccCc--cccccccccccccccchhHHHHhHcCCCHHHe
Confidence 34567899999 999999887654 88975 57899999999999999999999999999876
No 32
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=99.13 E-value=1.1e-11 Score=79.73 Aligned_cols=59 Identities=32% Similarity=0.738 Sum_probs=51.1
Q ss_pred cccccccccccchhhhcccCchhhhhhhhccchhcccccccccceeccccccccChhhhHHHHHHhcCCcCCc
Q psy13208 46 AHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDGK 118 (120)
Q Consensus 46 ~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~~~~~~c~~~~~~~c~i~~~~r~~C~~CRl~Kcl~~gm~~~~~ 118 (120)
.+...|.+|. +++++.++.... |.|.. .++|.|+...++.|++|||+|||++||++++|
T Consensus 21 yGv~sC~aCk-------~FFRR~v~~~~~-----y~C~~--~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~v 79 (110)
T 1kb2_A 21 FNAMTCEGCK-------GFFRRSMKRKAL-----FTCPF--NGDCRITKDNRRHCQACRLKRCVDIGMMKEFI 79 (110)
T ss_dssp TTEECCHHHH-------HHHHHHHHTTCC-----CCCSS--CSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGS
T ss_pred eCchhHhhhh-------hhheeeeecccc-----eeeCC--CCCccCCcccceecccccHhhhhhcCCcHHhc
Confidence 4457899999 999998886654 88975 57899999999999999999999999998865
No 33
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=99.12 E-value=7.4e-12 Score=78.42 Aligned_cols=59 Identities=32% Similarity=0.776 Sum_probs=50.4
Q ss_pred cccccccccccchhhhcccCchhhhhhhhccchhc-ccccccccceeccccccccChhhhHHHHHHhcCCcCCc
Q psy13208 46 AHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEF-ACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDGK 118 (120)
Q Consensus 46 ~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~~~~~-~c~~~~~~~c~i~~~~r~~C~~CRl~Kcl~~gm~~~~~ 118 (120)
.+...|.+|. ++++++++.... | .|.. .++|.|+...++.|++|||+|||++||++++|
T Consensus 22 yGv~sC~aCk-------~FFRR~v~~~~~-----y~~C~~--~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 81 (94)
T 1a6y_A 22 YGVLACEGCK-------GFFRRSIQQNIQ-----YKRCLK--NENCSIVRINRNRCQQCRFKKCLSVGMSRDAV 81 (94)
T ss_dssp TTEEECHHHH-------HHHHHHHSSCCC-----CCCCSS--TTCCCCCTTTTTSCHHHHHHHHTTTTCCSTTC
T ss_pred eCccchhhhh-------hehheeeecccc-----eEEccC--CCCCccCccccccccchhHHHhhHccCCHHHh
Confidence 4457899999 999888876654 6 4864 57899999999999999999999999999887
No 34
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=99.11 E-value=1.1e-11 Score=80.01 Aligned_cols=59 Identities=32% Similarity=0.790 Sum_probs=51.4
Q ss_pred cccccccccccchhhhcccCchhhhhhhhccchhcccccccccceeccccccccChhhhHHHHHHhcCCcCCc
Q psy13208 46 AHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDGK 118 (120)
Q Consensus 46 ~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~~~~~~c~~~~~~~c~i~~~~r~~C~~CRl~Kcl~~gm~~~~~ 118 (120)
.+...|.+|. +++++.++.... |.|.. .++|.|+...++.|++|||+|||++||++++|
T Consensus 24 yGv~sC~aCk-------~FFRR~v~~~~~-----y~C~~--~~~C~i~~~~R~~Cr~CR~~KCl~vGM~~~~v 82 (113)
T 2a66_A 24 YGLLTCESCK-------GFFKRTVQNNKR-----YTCIE--NQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAV 82 (113)
T ss_dssp TTEEEEHHHH-------HHHHHHHHTTCC-----CCCSS--CSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGS
T ss_pred eCcccHHHHH-------HHHhhhhhcccc-----ccccc--cccCCcCCCccccccchhHHHHhHhCCCHHHh
Confidence 4457899999 999998887654 88975 57899999999999999999999999999876
No 35
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=99.11 E-value=1.1e-11 Score=79.04 Aligned_cols=59 Identities=29% Similarity=0.692 Sum_probs=50.3
Q ss_pred cccccccccccchhhhcccCchhhhhhhhccchhcccccccccceeccccccccChhhhHHHHHHhcCCcCCc
Q psy13208 46 AHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDGK 118 (120)
Q Consensus 46 ~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~~~~~~c~~~~~~~c~i~~~~r~~C~~CRl~Kcl~~gm~~~~~ 118 (120)
.+...|.+|. +++++.++.... |.|.. .++|.|+...++.|++|||+|||++||+++++
T Consensus 22 yGv~sC~aCk-------~FFRR~v~~~~~-----y~C~~--~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~~ 80 (105)
T 1r4i_A 22 YGALTCGSCK-------VFFKRAAEGKQK-----YLCAS--RNDCTIDKFRRKNCPSCRLRKCYEAGMTLGAR 80 (105)
T ss_dssp TTEEEEHHHH-------HHHHHHHTSCCC-----CCCSS--SSCCCCCTTTTTTCHHHHHHHHHHHTCCSCC-
T ss_pred eCCcchhhhh-------hhhceeEEecCc-----eeecc--CCccccCccccccchhchHHHHHhhhcccchh
Confidence 4457899999 999888877654 88975 57899999999999999999999999998775
No 36
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=99.10 E-value=1.7e-11 Score=77.91 Aligned_cols=62 Identities=35% Similarity=0.736 Sum_probs=51.6
Q ss_pred cccccccccccchhhhcccCchhhhhhhhccchhcccccccccceeccccccccChhhhHHHHHHhcCCcCCcc
Q psy13208 46 AHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDGKS 119 (120)
Q Consensus 46 ~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~~~~~~c~~~~~~~c~i~~~~r~~C~~CRl~Kcl~~gm~~~~~~ 119 (120)
.+...|.+|. ++++++++... ...|.|.. .++|.|+...++.|++|||+|||++||++++|-
T Consensus 16 yGv~sC~aCk-------~FFRR~v~~~~---~~~y~C~~--~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~ 77 (103)
T 2nll_B 16 YRCITCEGCK-------GFFRRTIQKNL---HPSYSCKY--EGKCVIDKVTRNQCQECRFKKCIYVGMATDLVL 77 (103)
T ss_dssp TTEECCHHHH-------HHHHHHHHTTC---GGGCCCSS--CTTCCCSTTTTTSCHHHHHHHHHHTTCCGGGSC
T ss_pred cCcccHHHhh-------hhheecccccc---cchhhhhc--cCCcCcCccCccccchhhhHhhhHhCCCHHHhh
Confidence 4457899999 99988887653 12488975 588999999999999999999999999998873
No 37
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=99.08 E-value=2.2e-11 Score=79.35 Aligned_cols=60 Identities=30% Similarity=0.671 Sum_probs=51.5
Q ss_pred cccccccccccchhhhcccCchhhhhhhhccchhcccccccccceeccccccccChhhhHHHHHHhcCCcCCcc
Q psy13208 46 AHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDGKS 119 (120)
Q Consensus 46 ~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~~~~~~c~~~~~~~c~i~~~~r~~C~~CRl~Kcl~~gm~~~~~~ 119 (120)
.+...|.+|. +++++.++.... |.|.. .++|.|+...++.|++|||+|||++||++++|.
T Consensus 23 yGv~sC~aCk-------~FFRR~v~~~~~-----y~C~~--~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~ 82 (119)
T 2han_B 23 YNALTCEGCK-------GFFRRSVTKSAV-----YCCKF--GRACEMDMYMRRKCQECRLKKCLAVGMRPECVV 82 (119)
T ss_dssp TTEEECHHHH-------HHHHHHHHTTCC-----CCCSS--CSCCCCSTTGGGTCHHHHHHHHHHTTCCGGGSS
T ss_pred ECchhHHhhH-------HhhhhheEeccc-----ccccc--ccccccCccccccchhhHHHHHHHhCCCHHHcc
Confidence 4457899999 999988886544 88975 478999999999999999999999999998774
No 38
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=98.84 E-value=7.7e-10 Score=68.16 Aligned_cols=38 Identities=18% Similarity=0.332 Sum_probs=33.5
Q ss_pred hhcccccccccceeccccccccChhhhHHHHHHhcCCcCC
Q psy13208 78 YEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDG 117 (120)
Q Consensus 78 ~~~~c~~~~~~~c~i~~~~r~~C~~CRl~Kcl~~gm~~~~ 117 (120)
.+|.|.. +++|.|+...|+.|++|||+|||+|||.++.
T Consensus 37 ~~y~C~~--~~~C~i~~~~R~~C~~CR~qKCl~VgM~~~~ 74 (87)
T 2lze_A 37 LTYTDRD--YKNCESYHKCSDLCQYCRYQKDLAIHHQHHH 74 (87)
T ss_dssp CTTTSCC--CCCCCCSSCCSSSCSGGGTSCCHHHHCSSCC
T ss_pred CeeEcCC--CCccccCCCccCcCCcccChhhccCcCEecc
Confidence 3588974 5899999999999999999999999998754
No 39
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=98.81 E-value=9e-10 Score=86.15 Aligned_cols=59 Identities=34% Similarity=0.834 Sum_probs=51.0
Q ss_pred cccccccccccchhhhcccCchhhhhhhhccchhcccccccccceeccccccccChhhhHHHHHHhcCCcCCc
Q psy13208 46 AHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEFACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDGK 118 (120)
Q Consensus 46 ~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~~~~~~c~~~~~~~c~i~~~~r~~C~~CRl~Kcl~~gm~~~~~ 118 (120)
.+...|.+|. |+++++++.+.. |.|.. .++|.|++..|+.|++|||+||+++||++++|
T Consensus 152 ygv~sC~~Ck-------~FFrR~~~~~~~-----~~C~~--~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 210 (467)
T 3dzy_A 152 YGVYSCEGCK-------GFFKRTVRKDLT-----YTCRD--NKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 210 (467)
T ss_dssp TTEECCHHHH-------HHHHHHHHTTCC-----CCCSS--SSCCCCCSSSSSSCHHHHHHHHHHTTCCGGGC
T ss_pred CCCcchhhhh-------HhccccccCCCc-----eeCCC--CCCCCCCcccccccccchhhhhhhccccchhh
Confidence 4456899999 999988876655 88975 57899999999999999999999999998776
No 40
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=98.65 E-value=5.4e-09 Score=80.71 Aligned_cols=58 Identities=31% Similarity=0.767 Sum_probs=48.8
Q ss_pred CcccccccccccchhhhcccCchhhhhhhhccchhc-ccccccccceeccccccccChhhhHHHHHHhcCCcCCc
Q psy13208 45 KAHRNQCQACRLKKCLNMGMNKDDAQHLKNSLLYEF-ACTNLVELRCIVDKAHRNQCQACRLKKCLNMGMNKDGK 118 (120)
Q Consensus 45 ~~~r~~C~~CR~~kCl~~gm~~~~v~~~r~~~~~~~-~c~~~~~~~c~i~~~~r~~C~~CRl~Kcl~~gm~~~~~ 118 (120)
..+...|.+|. |++++.++.+.. | .|. ++|.|++..|+.|++|||+||+++||++++|
T Consensus 64 hygv~~C~~C~-------~FFrR~~~~~~~-----~~~c~----~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~v 122 (419)
T 3dzy_D 64 HYGVHACEGCK-------GFFRRTIRLKLI-----YDRCD----LNCRIHKKSRNKCQYCRFQKCLAVGMSHNAI 122 (419)
T ss_dssp CSSSBCCHHHH-------HHHHHHHTTTCC-----CCCCC----SCCCCCTTGGGTCHHHHHHHHHHTTCCGGGC
T ss_pred ccCcccchhhh-------HHHccchhcccc-----ccccc----CCCCcccccCccchhhhHHHHhhcccchhhe
Confidence 35567999999 999888876654 4 352 6899999999999999999999999999876
No 41
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=93.25 E-value=0.015 Score=41.94 Aligned_cols=22 Identities=5% Similarity=-0.129 Sum_probs=0.0
Q ss_pred cchhhhcccCchhhhhhhhccc
Q psy13208 56 LKKCLNMGMNKDDAQHLKNSLL 77 (120)
Q Consensus 56 ~~kCl~~gm~~~~v~~~r~~~~ 77 (120)
-.||+++||.+++||.+|++..
T Consensus 12 ~~kCl~vGMkkeaVq~~R~~~~ 33 (282)
T 1lbd_A 12 SGLVPRGSHKREAVQEERQRGK 33 (282)
T ss_dssp ----------------------
T ss_pred CCCcCccCCcHHhhcCCCCCCC
Confidence 4699999999999999998654
No 42
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=28.17 E-value=29 Score=20.91 Aligned_cols=37 Identities=27% Similarity=0.552 Sum_probs=21.8
Q ss_pred ceeccCCCCCccccCcccccccccccchhhhcccCch
Q psy13208 31 CQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKD 67 (120)
Q Consensus 31 ~~~C~~g~~~C~i~~~~r~~C~~CR~~kCl~~gm~~~ 67 (120)
.+.|.-++..=.++......|..|...+...+||..+
T Consensus 48 FFkC~C~~Rt~sl~r~P~~~C~~Cg~~~wer~~M~~e 84 (92)
T 2kwq_A 48 FFKCPCGNRTISLDRLPKKHCSTCGLFKWERVGMLKE 84 (92)
T ss_dssp EEECTTSCEEEESSSSCCSCCTTTCSCCCEEECCCSS
T ss_pred EEECCCCCceeEeeeCCCCCCCCCCCCceEEeecccc
Confidence 4556422222233555567888888777666777653
Done!