RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13208
(120 letters)
>d1a6ya_ g.39.1.2 (A:) Orphan nuclear receptor reverb DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 38.8 bits (90), Expect = 8e-06
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 17 GTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
G + +N C + + +RN+CQ CR KKCL++GM++D +
Sbjct: 22 GCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRF 76
Score = 33.8 bits (77), Expect = 7e-04
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C + + +RN+CQ CR KKCL++GM++D
Sbjct: 45 NCSIVRINRNRCQQCRFKKCLSVGMSRDA 73
>d1dszb_ g.39.1.2 (B:) Retinoid X receptor (RXR-alpha) DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 38.4 bits (89), Expect = 1e-05
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 25 KAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
+ R C++DK RN+CQ CR +KCL MGM ++ Q
Sbjct: 34 RTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQE 80
Score = 34.9 bits (80), Expect = 3e-04
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C++DK RN+CQ CR +KCL MGM ++
Sbjct: 50 CLIDKRQRNRCQYCRYQKCLAMGMKRE 76
>d1r4ia_ g.39.1.2 (A:) Androgen receptor {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 74
Score = 37.8 bits (87), Expect = 2e-05
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 26 AHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKD 67
A + + A C +DK R C +CRL+KC GM
Sbjct: 32 AAEGKQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLG 73
Score = 35.4 bits (81), Expect = 1e-04
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C +DK R C +CRL+KC GM
Sbjct: 47 CTIDKFRRKNCPSCRLRKCYEAGMTLG 73
>d1lo1a_ g.39.1.2 (A:) Steroid hormone receptor Err2 DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 38.1 bits (88), Expect = 2e-05
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 25 KAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
+ + + T C + K R CQACR K L +GM K+ +
Sbjct: 33 RTIQGNIEYSCPATNECEITKRRRKSCQACRFMKALKVGMLKEGVRL 79
Score = 35.4 bits (81), Expect = 2e-04
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKDG 117
C + K R CQACR K L +GM K+G
Sbjct: 48 ECEITKRRRKSCQACRFMKALKVGMLKEG 76
>d1hcqa_ g.39.1.2 (A:) Estrogen receptor DNA-binding domain {Human
and chicken (Homo sapiens) and (Gallus gallus) [TaxId:
9606]}
Length = 74
Score = 36.6 bits (84), Expect = 5e-05
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 25 KAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNK 66
++ + T +C +DK R CQACRL+KC +GM K
Sbjct: 33 RSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMK 74
Score = 34.0 bits (77), Expect = 5e-04
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNK 115
+C +DK R CQACRL+KC +GM K
Sbjct: 48 QCTIDKNRRKSCQACRLRKCYEVGMMK 74
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 37.1 bits (85), Expect = 7e-05
Identities = 19/60 (31%), Positives = 25/60 (41%)
Query: 12 PTCQAGTERCIVDKAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
TC+ G+C++DK RNQCQ CR KKC+ +GM D
Sbjct: 19 ITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLD 78
Score = 32.1 bits (72), Expect = 0.005
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKD 116
+C++DK RNQCQ CR KKC+ +GM D
Sbjct: 47 KCVIDKVTRNQCQECRFKKCIYVGMATD 74
>d1dsza_ g.39.1.2 (A:) Retinoic acid receptor DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 36.2 bits (83), Expect = 8e-05
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 25 KAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
++ + CI++K RN+CQ CRL+KC +GM+K+ ++
Sbjct: 28 RSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRN 74
Score = 32.7 bits (74), Expect = 0.002
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKDG 117
CI++K RN+CQ CRL+KC +GM+K+
Sbjct: 44 CIINKVTRNRCQYCRLQKCFEVGMSKES 71
>d2hanb1 g.39.1.2 (B:5-87) Ecdysone receptor DNA-binding domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 83
Score = 35.7 bits (82), Expect = 1e-04
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 25 KAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
++ C C +D R +CQ CRLKKCL +GM +
Sbjct: 29 RSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVP 75
Score = 33.0 bits (75), Expect = 0.002
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C +D R +CQ CRLKKCL +GM +
Sbjct: 45 CEMDMYMRRKCQECRLKKCLAVGMRPE 71
>d1lata_ g.39.1.2 (A:) Glucocorticoid receptor DNA-binding domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 35.4 bits (81), Expect = 2e-04
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 25 KAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKD 67
+A Q G+CI+DK R C ACR +KCL GMN +
Sbjct: 29 RAVEGQHNYLCKYEGKCIIDKIRRKNCPACRYRKCLQAGMNLE 71
Score = 34.3 bits (78), Expect = 4e-04
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKD 116
+CI+DK R C ACR +KCL GMN +
Sbjct: 44 KCIIDKIRRKNCPACRYRKCLQAGMNLE 71
>d1kb2a_ g.39.1.2 (A:) Vitamin D3 receptor, VDR, DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 35.0 bits (80), Expect = 3e-04
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 26 AHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
+ + + G C + K +R CQACRLK+C+++GM K+
Sbjct: 30 SMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILT 75
Score = 33.1 bits (75), Expect = 0.002
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 89 RCIVDKAHRNQCQACRLKKCLNMGMNKD 116
C + K +R CQACRLK+C+++GM K+
Sbjct: 44 DCRITKDNRRHCQACRLKRCVDIGMMKE 71
>d1cita_ g.39.1.2 (A:) Orphan nuclear receptor NGFI-B DNA-binding
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 89
Score = 33.9 bits (77), Expect = 0.001
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 25 KAHRNQCQACQAGTGRCIVDKAHRNQCQACRLKKCLNMGMNKDDAQH 71
+ + + C VDK RN+CQ CR +KCL +GM K+ +
Sbjct: 29 RTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRT 75
Score = 31.6 bits (71), Expect = 0.007
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 90 CIVDKAHRNQCQACRLKKCLNMGMNKD 116
C VDK RN+CQ CR +KCL +GM K+
Sbjct: 45 CPVDKRRRNRCQFCRFQKCLAVGMVKE 71
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.133 0.442
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 456,453
Number of extensions: 20340
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 49
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.4 bits)