BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13210
(155 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 13/65 (20%)
Query: 97 MRSHIRTHTGEKPY-------------AHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAY 143
+++H+RTHTGEKPY + + HYRKHTG KPF+C VC + F+
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLA 92
Query: 144 QHLRR 148
H++R
Sbjct: 93 LHMKR 97
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 74 RTDPFRHKFVCYACDYFSYNIGCMRSHIRTHTGEKPYAHI-----------IRNHYRKHT 122
RT + C C +R+H RTHTGEKPYA +R H R HT
Sbjct: 70 RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT 129
Query: 123 GRKPFKCVVCKQFFATYSGAYQHLRRTHGQE 153
G KP+KC C + F+ + H +RTH E
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTH-QRTHTGE 159
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 74 RTDPFRHKFVCYACDYFSYNIGCMRSHIRTHTGEKPY-----------AHIIRNHYRKHT 122
RT + C C + +R+H RTHTGEKPY + H R HT
Sbjct: 98 RTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHT 157
Query: 123 GRKPFKCVVCKQFFA 137
G KP+KC C + F+
Sbjct: 158 GEKPYKCPECGKSFS 172
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
Query: 76 DPFRHKFVCYACDYFSYNIGCMRSHIRTHTGEKPY-----------AHIIRNHYRKHTGR 124
+P + C C + H RTHTGEKPY + H R HTG
Sbjct: 16 EPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGE 75
Query: 125 KPFKCVVCKQFFATYSGAYQHLRRTHGQE 153
KP+KC C + F+ + H +RTH E
Sbjct: 76 KPYKCPECGKSFSQRANLRAH-QRTHTGE 103
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 13/65 (20%)
Query: 97 MRSHIRTHTGEKPY-------------AHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAY 143
+++H+RTHTGEKPY + + HYRKHTG +PF+C C + F+
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLA 83
Query: 144 QHLRR 148
H++R
Sbjct: 84 LHMKR 88
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 26/86 (30%)
Query: 85 YACDYFSYNIGC---------MRSHIRTHTGEKPY-------------AHIIRNHYRKHT 122
+ CDY GC +++H+RTHTGEKPY + + HYRKHT
Sbjct: 6 HTCDY----AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 123 GRKPFKCVVCKQFFATYSGAYQHLRR 148
G +PF+C C + F+ H++R
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKR 87
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 82 FVCYACDYFSYNIGCMRSHIRTHTGEKPY-----------AHIIRNHYRKHTGRKPFKCV 130
+ C C ++ H RTHTGEKPY + ++ H R HTG KP+KC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 131 VCKQFFATYSGAYQHLRRTH 150
C + F+ +H +RTH
Sbjct: 65 ECGKSFSRSDHLSRH-QRTH 83
Score = 33.9 bits (76), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 114 IRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE 153
++ H R HTG KP+KC C + F+ S +H +RTH E
Sbjct: 20 LQKHQRTHTGEKPYKCPECGKSFSQSSDLQKH-QRTHTGE 58
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 86 ACDYFSYNIGCMRSHIRTHTGEKPYAHII--RN---------HYRKHTGRKPFKCVVCKQ 134
+CD G + HIR HTG+KP+ I RN H R HTG KPF C +C +
Sbjct: 11 SCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 135 FFATYSGAYQHLR 147
FA +H +
Sbjct: 71 KFARSDERKRHTK 83
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE 153
H R HTG+KPF+C +C + F+ H+R G++
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 82 FVCY--ACDYFSYNIGCMRSHIRTHTGEKPY-------------AHIIRNHYRKHTGRKP 126
F+C C+ + + ++ H R HTGEKPY + ++ H R+HTG KP
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 127 FKCVVCKQFFATYSGAYQHLRRTHGQESI 155
F+C C++ F+ H R G++
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPF 95
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 13/54 (24%)
Query: 97 MRSHIRTHTGEKPY-----------AHIIRNHYRKHTGRKPFKC--VVCKQFFA 137
++ H R HTG KP+ + ++ H R HTG KPF C C++ FA
Sbjct: 54 LKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA 107
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 82 FVCYACDYFSYNIGCMRSHIRTHTGEKPYA 111
F C C +++H RTHTGEKP++
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFS 96
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 97 MRSHIRTHTGEKPYAHII--RN---------HYRKHTGRKPFKCVVCKQFFATYSGAYQH 145
+ +HIR HTG+KP+ I RN H R HTG KPF C +C + FAT +H
Sbjct: 22 LDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRH 81
Query: 146 LR 147
+
Sbjct: 82 TK 83
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 114 IRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQES 154
+ H R HTG+KPF+C +C + F+ + H+R G++
Sbjct: 22 LDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
>pdb|2LPE|A Chain A, Solution Nmr Structure Of The Ksr1 Ca1-Ca1a Domain
Length = 149
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 13/68 (19%)
Query: 24 DGGF-SKLKRALDV---NQSMIDISADRLERLRTQCATSAELTQHEIRTIESMIRTDPFR 79
DGG + + RAL Q +IDIS L LRT+C+ S +LTQ EIRT+E+
Sbjct: 4 DGGAGAAVSRALQQCGQLQKLIDISIGSLRGLRTKCSVSNDLTQQEIRTLEA-------- 55
Query: 80 HKFVCYAC 87
K V Y C
Sbjct: 56 -KLVKYIC 62
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 86 ACDYFSYNIGCMRSHIRTHTGEKPYAHII--RN---------HYRKHTGRKPFKCVVCKQ 134
+CD + +HIR HTG+KP+ I RN H R HTG KPF C +C +
Sbjct: 11 SCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGR 70
Query: 135 FFATYSGAYQHLR 147
FAT +H +
Sbjct: 71 KFATLHTRDRHTK 83
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 114 IRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQES 154
+ H R HTG+KPF+C +C + F+ ++G QH+R G++
Sbjct: 22 LDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 22/125 (17%)
Query: 43 ISADRLERLRTQCATSAELTQHEIRTIESMIRTD-PFRHKFVCY--ACDYFSYNIGC--- 96
I +L R + C + T HE+ T +M P ++ VCY C +
Sbjct: 19 IDEAQLSRPKKSCDRTFS-TMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYK 77
Query: 97 MRSHIRTHTGEKPY-------------AHIIRNHYRKHTGRKPFKCVV--CKQFFATYSG 141
+ +HIR HTGEKP+ + ++ H R HTG KPFKC C + FA S
Sbjct: 78 LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSD 137
Query: 142 AYQHL 146
+H+
Sbjct: 138 RKKHM 142
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 86 ACDYFSYNIGCMRSHIRTHTGEKPYAHII--RN---------HYRKHTGRKPFKCVVCKQ 134
+CD + + HIR HTG+KP+ I RN H R HTG KPF C +C +
Sbjct: 11 SCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 135 FFATYSGAYQHLR 147
FA +H +
Sbjct: 71 KFARSDERKRHTK 83
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE 153
H R HTG+KPF+C +C + F+ H+R G++
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 85 YACDYFSYNIGCMRS-----HIRTHTGEKPYAHII--RN---------HYRKHTGRKPFK 128
YAC S + RS HIR HTG+KP+ I RN H R HTG KPF
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 129 CVVCKQFFATYSGAYQHLR 147
C +C + FA +H +
Sbjct: 65 CDICGRKFARSDERKRHTK 83
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQES 154
H R HTG+KPF+C +C + F+ H+R G++
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 85 YACDYFSYNIGCMRS-----HIRTHTGEKPYAHII--RN---------HYRKHTGRKPFK 128
YAC S + RS HIR HTG+KP+ I RN H R HTG KPF
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 129 CVVCKQFFATYSGAYQHLR 147
C +C + FA +H +
Sbjct: 65 CDICGRKFARSDERKRHTK 83
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQES 154
H R HTG+KPF+C +C + F+ H+R G++
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 85 YACDYFSYNIGCMRS-----HIRTHTGEKPYAHII--RN---------HYRKHTGRKPFK 128
YAC S + RS HIR HTG+KP+ I RN H R HTG KPF
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 129 CVVCKQFFATYSGAYQHLR 147
C +C + FA +H +
Sbjct: 65 CDICGRKFARSDERKRHTK 83
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQES 154
H R HTG+KPF+C +C + F+ H+R G++
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 85 YACDYFSYNIGCMRS-----HIRTHTGEKPYAHII--RN---------HYRKHTGRKPFK 128
YAC S + RS HIR HTG+KP+ I RN H R HTG KPF
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 129 CVVCKQFFATYSGAYQHLR 147
C +C + FA +H +
Sbjct: 64 CDICGRKFARSDERKRHTK 82
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQES 154
H R HTG+KPF+C +C + F+ H+R G++
Sbjct: 24 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 15/69 (21%)
Query: 100 HIRTHTGEKPYA-------------HIIRNHYRKHTGRKPFKC--VVCKQFFATYSGAYQ 144
H+R HTGEKP+ ++ H R HTG KP+ C C + F+ S +
Sbjct: 58 HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAK 117
Query: 145 HLRRTHGQE 153
H RTH E
Sbjct: 118 HQNRTHSNE 126
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 16/71 (22%)
Query: 97 MRSHIRTHTGEKPY--------------AHIIRNHYRKHTGRKPFKCVV--CKQFFATYS 140
+++H+R+HTGEKPY + ++ R H+ KP+ C + C + + S
Sbjct: 85 LKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPS 144
Query: 141 GAYQHLRRTHG 151
+H++ HG
Sbjct: 145 SLRKHVKTVHG 155
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 85 YACDYFSYNIGCMRS-----HIRTHTGEKPYAHII--RN---------HYRKHTGRKPFK 128
YAC S + RS HIR HTG+KP+ I RN H R HTG KPF
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 129 CVVCKQFFATYSGAYQHLR 147
C +C + FA +H +
Sbjct: 65 CDICGRKFARSDERKRHTK 83
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQES 154
H R HTG+KPF+C +C + F+ H+R G++
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 11/52 (21%)
Query: 107 EKPY-----------AHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLR 147
EKPY + I+ H R HTG KP+KC+ C + F+ SG H R
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 97 MRSHIRTHTGEKPY-----------AHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQH 145
+++H+R HTG KPY + + H R H+ +PFKC +C S H
Sbjct: 24 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH 83
Query: 146 LRRTHGQE 153
LR G
Sbjct: 84 LRSHTGDS 91
Score = 29.3 bits (64), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 11/53 (20%)
Query: 82 FVCYACDYFSYNIGCMRSHIRTHTGEKPY-----AHIIRN------HYRKHTG 123
+ C CDY + + + H+R H+ E+P+ + RN H R HTG
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTG 89
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 82 FVCYACDYFSYNIGCMRSHIRTHTGE 107
F C C Y S N + H+R+HTG+
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGD 90
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 11/83 (13%)
Query: 82 FVCYACDYFSYNIGCMRSHIRTHTGEK-----------PYAHIIRNHYRKHTGRKPFKCV 130
++C C + +R H H+ EK P A H HTG + ++C+
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 131 VCKQFFATYSGAYQHLRRTHGQE 153
C + F Y H++ H Q+
Sbjct: 83 ACGKSFINYQFMSSHIKSVHSQD 105
>pdb|3R3E|A Chain A, The Glutathione Bound Structure Of Yqjg, A Glutathione
Transferase Homolog From Escherichia Coli K-12
pdb|3R3E|B Chain B, The Glutathione Bound Structure Of Yqjg, A Glutathione
Transferase Homolog From Escherichia Coli K-12
pdb|4G0I|A Chain A, Glutathionyl-hydroquinone Reductase, Yqjg Of Escherichia
Coli
pdb|4G0I|B Chain B, Glutathionyl-hydroquinone Reductase, Yqjg Of Escherichia
Coli
pdb|4G0K|A Chain A, Glutathionyl-hydroquinone Reductase, Yqjg, Of E.coli
Complexed With Gs-menadione
pdb|4G0K|B Chain B, Glutathionyl-hydroquinone Reductase, Yqjg, Of E.coli
Complexed With Gs-menadione
pdb|4G0L|A Chain A, Glutathionyl-hydroquinone Reductase, Yqjg, Of E.coli
Complexed With Gsh
pdb|4G0L|B Chain B, Glutathionyl-hydroquinone Reductase, Yqjg, Of E.coli
Complexed With Gsh
Length = 328
Score = 33.1 bits (74), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 26/164 (15%)
Query: 3 ALRTVFHQLCRAFY-AYEKDAQDGGFSKLKRALDVNQSMIDISADRLERLRTQ--CATSA 59
AL+T +L Y GF+ + A D + + S RLE++ Q T
Sbjct: 174 ALQTKIDELNGWIYDTVNNGVYKAGFATSQEAYDEAVAKVFESLARLEQILGQHRYLTGN 233
Query: 60 ELTQHEIRTIESMIRTDPF--------RHKFVCYACDY-FSYNIGCMRSHIRTHTGEKPY 110
+LT+ +IR +++R DP +H+ Y Y F +I M T +
Sbjct: 234 QLTEADIRLWTTLVRFDPVYVTHFKCDKHRISDYLNLYGFLRDIYQMPGIAETVN----F 289
Query: 111 AHIIRNHY-RKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE 153
H IRNHY R H P + G +Q L HG++
Sbjct: 290 DH-IRNHYFRSHKTINPTGIISI--------GPWQDLDEPHGRD 324
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 82 FVCYACDYFSYNIGCMRSHIRTHTGEKPYA-----------HIIRNHYRKHTGRKPFKCV 130
F C C + +H+ H+ +PY ++ H HTG KP KC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 131 VCKQFFATYSGAYQHLRRTHG 151
VC + F+ S H R+ G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
Query: 79 RHKFVCYACDYFSYNIGCMRSHIRTHTGEKPY------------AHIIRNHYRKHTGRKP 126
R ++ C C + + H RTHTGEKPY +H+I H+R HTG P
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLI-GHHRVHTGSGP 74
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 114 IRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLR 147
+ H R HTG KP+KC C + F S H R
Sbjct: 34 LSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLR 147
H R HTG+KPF+C +C + F+ H+R
Sbjct: 40 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 17/70 (24%)
Query: 81 KFVCYACD-YF--SYNIGCMRSHIRTHTGEKPYAHII-----------RNHYRKHTGRKP 126
+F+C C +F SYN + H RTHT E+PY I R+H H+ KP
Sbjct: 17 EFICKFCGRHFTKSYN---LLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 127 FKCVVCKQFF 136
FKC C + F
Sbjct: 74 FKCQECGKGF 83
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 15/69 (21%)
Query: 97 MRSHIRTHTGEKPYA-------------HIIRNHYRKHTGRKPFKCVV--CKQFFATYSG 141
+++H+ HTGEKP+ H + H HTG K F C C F T +
Sbjct: 21 LQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKAN 80
Query: 142 AYQHLRRTH 150
+H R H
Sbjct: 81 MKKHFNRFH 89
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 97 MRSHIRTHTG-EKPY--AHIIRNHYRKHTGRKPFKCVV--CKQFFATYSGAYQHLRRTH 150
+RSHI +H G K Y + ++ H R HTG KPF C C++ FA +H RRTH
Sbjct: 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH-RRTH 72
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 15/79 (18%)
Query: 83 VCYACDYFSYNIGCMRSHIRTHTGEKPYAHI-------------IRNHYRKHTGRKPFKC 129
VC C ++ H HTGEKP+ +R H R HTG +P+ C
Sbjct: 36 VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 95
Query: 130 VV--CKQFFATYSGAYQHL 146
C + FA + H+
Sbjct: 96 PFDGCNKKFAQSTNLKSHI 114
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQH 145
H R HTG KPF C +C + FA +H
Sbjct: 22 HIRTHTGEKPFACDICGRKFARSDERKRH 50
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 114 IRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
++ HYR HT KP+ C +C + F +H ++ H
Sbjct: 18 LKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 11/48 (22%)
Query: 100 HIRTHTGEKPYA-----------HIIRNHYRKHTGRKPFKCVVCKQFF 136
H+ H G +PY H + H + HTG KP++C +C + F
Sbjct: 28 HMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRF 75
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
H R HTG KP+KC C+ A + HL R H
Sbjct: 23 HLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 15/70 (21%)
Query: 97 MRSHIRTHTGEKPYA-------------HIIRNHYRKHTGRKPFKCVV--CKQFFATYSG 141
+++H+ HTGEKP+ H + H HTG K F C C F T +
Sbjct: 30 LQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKAN 89
Query: 142 AYQHLRRTHG 151
+H R H
Sbjct: 90 MKKHFNRFHN 99
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 114 IRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRT 149
++ H RKHTG KPF+C C + + +H R
Sbjct: 23 LKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARN 58
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 114 IRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQES 154
+R H HTG P+KC C Q F H+ + H S
Sbjct: 82 LRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 16/57 (28%)
Query: 85 YACD----YFSYNIGCMRSHIRTHTGEKPY-----------AHIIRNHYRKHTGRKP 126
Y CD F Y G + SH HTGEKPY ++ H R H+G KP
Sbjct: 18 YKCDRCQASFRYK-GNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 110 YAHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQES 154
Y + +H HTG KP++C +C F + H R G++
Sbjct: 29 YKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 13/71 (18%)
Query: 97 MRSHIRTHTGEKPYAHIIRN-----------HYRKHTGR--KPFKCVVCKQFFATYSGAY 143
+ H +H+GEKPY+ + H R H G KP+ C C + F+
Sbjct: 23 LNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN 82
Query: 144 QHLRRTHGQES 154
H+++ H S
Sbjct: 83 GHIKQVHSGPS 93
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 2.7, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 125 KPFKCVVCKQFFATYSGAYQHLRRTHGQE 153
KPF C+ C + F+ + G QH RR H E
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQH-RRIHTGE 38
>pdb|1Y7W|A Chain A, Crystal Structure Of A Halotolerant Carbonic Anhydrase
From Dunaliella Salina
pdb|1Y7W|B Chain B, Crystal Structure Of A Halotolerant Carbonic Anhydrase
From Dunaliella Salina
Length = 291
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 23 QDGGFSKLKRALDVNQSMIDISADRLERLRTQCATSA 59
Q+GG +K NQS IDI+ ++L ++ TSA
Sbjct: 36 QEGGTTKYPACSGSNQSPIDINTNQLMEPSSRSGTSA 72
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 3.3, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 125 KPFKCVVCKQFFATYSGAYQHLRRTHGQE 153
KPFKC C + F T S Y H R G++
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEK 39
>pdb|2KVH|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 27
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 125 KPFKCVVCKQFFATYSGAYQHLRRTHG 151
KPF C +C Q +S +HL RTHG
Sbjct: 2 KPFSCSLCPQRSRDFSAMTKHL-RTHG 27
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 82 FVCYACDYFSYNIGCMRSHIRTHTGEK 108
+VC C + G ++ H+R HTGEK
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 81 KFVCYACDYFSYNIGCMRSHIRTHTGEKPY 110
K++C C ++ HIRTHT +PY
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPY 30
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 79 RHKFVCYACDYFSYNIGCMRSHIRTHTGEKP 109
+ VC C C+ H R H+GEKP
Sbjct: 8 KKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.9 bits (58), Expect = 4.4, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 122 TGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE 153
+G KPF C C++ F++ S H ++TH +E
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVH-QQTHAEE 36
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 26.9 bits (58), Expect = 4.7, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 125 KPFKCVVCKQFFATYSGAYQHLRRTHGQESI 155
KP+ C VC + F + QHL R H QE++
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHL-RVHTQETL 40
>pdb|3ME5|A Chain A, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
Length = 482
Score = 26.6 bits (57), Expect = 5.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 48 LERLRTQCATSAELTQHEIRTIESMIRTDPFRHKF 82
E + QC ++E +H +RT ++ DP H F
Sbjct: 105 FESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHF 139
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 125 KPFKCVVCKQFFATYSGAYQHLRRTHGQ 152
KP+KC+ C + F S QH R GQ
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQ 38
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 95 GCMRSHIRTHTGEKPYA 111
G S RTHTGEKPYA
Sbjct: 1 GSSGSSGRTHTGEKPYA 17
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 122 TGRKPFKCVVCKQFFATYSGAYQHLR 147
+G++PF C +C F T + +HL+
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLK 28
>pdb|3SO5|A Chain A, Crystal Structure Of An Immunoglobulin I-Set Domain Of
Lrig3 Protein (Lrig3) From Mus Musculus At 1.70 A
Resolution
pdb|3SO5|B Chain B, Crystal Structure Of An Immunoglobulin I-Set Domain Of
Lrig3 Protein (Lrig3) From Mus Musculus At 1.70 A
Resolution
Length = 112
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 99 SHIRTHTGE-KPYAHIIRNHYRKHTGRKPFKCVVCKQFFATYS 140
+H+R GE Y I+R + T ++CV+ F ++YS
Sbjct: 62 AHLRAQGGELXEYTTILRLRNVEFTSEGXYQCVISNHFGSSYS 104
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 114 IRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQES 154
+R H R H +PFKC C S +H+++ HG S
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS 65
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 119 RKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
R H+G KP++C +C F H+ + H
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKH 39
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 25.8 bits (55), Expect = 9.7, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 85 YACDYFSYNIGC---MRSHIRTHTGEKP 109
Y CDY G + H R HTGEKP
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.137 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,457,793
Number of Sequences: 62578
Number of extensions: 158374
Number of successful extensions: 786
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 561
Number of HSP's gapped (non-prelim): 186
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.7 bits)