RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13210
(155 letters)
>gnl|CDD|205721 pfam13543, KSR1-SAM, SAM like domain present in kinase suppressor
RAS 1.
Length = 129
Score = 66.6 bits (163), Expect = 7e-15
Identities = 23/38 (60%), Positives = 28/38 (73%)
Query: 34 LDVNQSMIDISADRLERLRTQCATSAELTQHEIRTIES 71
Q +IDISA+ L LRTQCATS+ELTQ EIR +E+
Sbjct: 1 CKDLQDLIDISAEHLIGLRTQCATSSELTQQEIRALEA 38
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 31.6 bits (72), Expect = 0.013
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 115 RNHYRKHTGRKPFKCVVCKQFFAT 138
R H R HTG KP+KC VC + F++
Sbjct: 3 RRHMRTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 30.0 bits (68), Expect = 0.49
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 26 GFSKLKRALDVNQSMIDISADRLERLRTQCATSAELTQHEIRTI 69
FS L R LD S+ I + R + + E+ + + T+
Sbjct: 1083 QFSVLSRYLDPQWSIYGIQSPRPDGPMQTATSLDEVCEAHLATL 1126
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 28.0 bits (63), Expect = 2.1
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Query: 40 MIDISADRLERLRTQCATS---AELTQ 63
++D AD+L+R+R Q A AELT+
Sbjct: 308 LVDAPADQLDRMRAQ-AQRLGPAELTR 333
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 27.8 bits (62), Expect = 2.7
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 32 RALDVNQSMIDISADRLERLRTQ--CATSAELTQH 64
RA+ ++D+S L LR Q A +A+L +H
Sbjct: 296 RAVGEPGDLLDLSEAELAELRAQAAAADAADLQRH 330
>gnl|CDD|153389 cd07952, ED_3B_like, Uncharacterized class III extradiol
dioxygenases. This subfamily is composed of proteins of
unknown function with similarity to the catalytic B
subunit of class III extradiol dioxygenases. Class III
extradiol dioxygenases use a non-heme Fe(II) to cleave
aromatic rings between a hydroxylated carbon and an
adjacent non-hydroxylated carbon. They play key roles in
the degradation of aromatic compounds.
Length = 256
Score = 26.9 bits (60), Expect = 4.2
Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 22/84 (26%)
Query: 22 AQDG--GFSKLKRALDVNQSMIDISADRLERLRTQCATSAELTQHEIRTIES-------- 71
DG G+S D + I + E L EL I +
Sbjct: 175 DPDGPYGYSPDAAEYD-AAIVEAIENNDFEAL-------LELDDELIEKAKPDSYWQLLI 226
Query: 72 ---MIRTDPFRHKFVCYAC-DYFS 91
++ + P + K + Y YF
Sbjct: 227 LAGILESSPRKSKVLYYEVPTYFG 250
>gnl|CDD|153433 cd08010, yceG_like, proteins similar to Escherichia coli yceG. The
gene product of Escherichia coli yceG has been
erroneously annotated as an aminodeoxychorismate lyase.
Its overexpression has been reported to cause abnormal
biofilm architecture, and it has been reported to be
part of a putative five-gene operon. It might function
as a periplasmic solute-binding protein. The family also
includes Streptomyces caeruleus NovB, an uncharacterized
member of the novobiocin biosynthetic gene cluster.
Length = 245
Score = 26.4 bits (59), Expect = 5.8
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 27 FSKLKRALDVNQSMIDISADRLERLRTQCATSAELTQHEIRTIESMI 73
F K D+ + M+ LE A LT +E+ T+ S++
Sbjct: 87 FPKGATPEDLLKRMVKRFDKVLEEAWAARAGLPGLTPYEVLTLASIV 133
>gnl|CDD|226482 COG3973, COG3973, Superfamily I DNA and RNA helicases [General
function prediction only].
Length = 747
Score = 26.7 bits (59), Expect = 7.1
Identities = 9/52 (17%), Positives = 13/52 (25%), Gaps = 12/52 (23%)
Query: 38 QSMIDISADRLERLRTQCATSAELTQHEI------------RTIESMIRTDP 77
+ D LER L + I +E+M R
Sbjct: 12 STCRDTELKELEREERALKLFMSLIEPPIITLPDFEAESSQLIVEAMKRQIG 63
>gnl|CDD|153134 cd01584, AcnA_Mitochondrial, Aconitase catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. Mitochondrial aconitase A catalytic domain.
Aconitase (also known as aconitate hydratase and
citrate hydro-lyase) catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. Cis-aconitate is formed as an intermediary
product during the course of the reaction. In
eukaryotes two isozymes of aconitase are known to
exist: one found in the mitochondrial matrix and the
other found in the cytoplasm. This is the mitochondrial
form. The mitochondrial product is coded by a nuclear
gene. Most members of this subfamily are mitochondrial
but there are some bacterial members.
Length = 412
Score = 26.2 bits (58), Expect = 8.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 22 AQDGGFSKLKRALDVNQSMID 42
AQ GG LKRA D+N+ + D
Sbjct: 38 AQVGGEKDLKRAKDINKEVYD 58
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.137 0.433
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,693,107
Number of extensions: 654389
Number of successful extensions: 815
Number of sequences better than 10.0: 1
Number of HSP's gapped: 815
Number of HSP's successfully gapped: 23
Length of query: 155
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 66
Effective length of database: 6,990,096
Effective search space: 461346336
Effective search space used: 461346336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.1 bits)