RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13210
(155 letters)
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 59.9 bits (146), Expect = 4e-13
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 15/67 (22%)
Query: 98 RSHIRTHTGEKPYA--------------HIIRNHYRKHTGRKPFKCVVCKQFFATYSGAY 143
+ H +HT + PY + R H + H G K C T++
Sbjct: 20 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKR-HEKVHAGYPCKKDDSCSFVGKTWTLYL 78
Query: 144 QHLRRTH 150
+H+ H
Sbjct: 79 KHVAECH 85
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 56.4 bits (137), Expect = 9e-12
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 13/72 (18%)
Query: 95 GCMRSHIRTHTGEKPY-----------AHIIRNHYRKHTG--RKPFKCVVCKQFFATYSG 141
G S RTH+GEKPY + ++ H + F C C A S
Sbjct: 1 GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60
Query: 142 AYQHLRRTHGQE 153
HLR+ H
Sbjct: 61 LGVHLRKQHSYS 72
Score = 29.4 bits (67), Expect = 0.11
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 82 FVCYACD-YFSYNIGCMRSHIRT-HTGEKPYA 111
F C CD + + H+R H+ P +
Sbjct: 46 FHCPHCDTVIARK-SDLGVHLRKQHSYSGPSS 76
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 54.5 bits (132), Expect = 6e-11
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 15/65 (23%)
Query: 98 RSHIRTHTGEKPYA--------------HIIRNHYRKHTGRKPFKCVVCKQFFATYSGAY 143
++H+RTHTGEKPY + R HYRKHTG +PF+C C + F+
Sbjct: 24 KAHLRTHTGEKPYHCDWDGCGWKFARSDELTR-HYRKHTGHRPFQCQKCDRAFSRSDHLA 82
Query: 144 QHLRR 148
H++R
Sbjct: 83 LHMKR 87
Score = 33.7 bits (78), Expect = 0.004
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 14/60 (23%)
Query: 104 HTGEKPYAHI-----------IRNHYRKHTGRKPFKCVV--CKQFFATYSGAYQHLRRTH 150
T + ++ H R HTG KP+ C C FA +H R H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH-YRKH 60
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 54.4 bits (132), Expect = 7e-11
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 14/65 (21%)
Query: 98 RSHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQH 145
HIR HTG+KP+ H+ H R HTG KPF C +C + FA +H
Sbjct: 23 TRHIRIHTGQKPFQCRICMRNFSRSDHLTT-HIRTHTGEKPFACDICGRKFARSDERKRH 81
Query: 146 LRRTH 150
+ H
Sbjct: 82 -TKIH 85
Score = 37.1 bits (87), Expect = 3e-04
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 13/40 (32%)
Query: 98 RSHIRTHTGEKPYA------------HIIRNHYRKHTGRK 125
+HIRTHTGEKP+A R H + H +K
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFARSDERKR-HTKIHLRQK 89
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 56.4 bits (137), Expect = 9e-11
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 15/67 (22%)
Query: 98 RSHIRTHTGEKPY--------------AHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAY 143
+ H +HT + PY + + R H + H G K C T++
Sbjct: 123 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKR-HEKVHAGYPCKKDDSCSFVGKTWTLYL 181
Query: 144 QHLRRTH 150
+H+ H
Sbjct: 182 KHVAECH 188
Score = 49.1 bits (118), Expect = 4e-08
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 17/70 (24%)
Query: 98 RSHIRTHTGEKPY--------------AHIIRNHYRKHTGRKPFKC--VVCKQFFATYSG 141
++H+ HTGEKP+ H+ R H HTG K F C C F T +
Sbjct: 31 QAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR-HSLTHTGEKNFTCDSDGCDLRFTTKAN 89
Query: 142 AYQHLRRTHG 151
+H R H
Sbjct: 90 MKKHFNRFHN 99
Score = 46.0 bits (110), Expect = 4e-07
Identities = 16/67 (23%), Positives = 21/67 (31%), Gaps = 18/67 (26%)
Query: 100 HIRTHTGEKPY--------------AHIIRNHYRKHTGRKPFKC--VVCKQFFATYSGAY 143
K Y + H KHTG KPF C C++ F +
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQA-HLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 144 QHLRRTH 150
+H TH
Sbjct: 62 RH-SLTH 67
Score = 42.2 bits (100), Expect = 1e-05
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 20/69 (28%)
Query: 100 HIRTHTGEKPY--------------AHIIRNHYRKHTGRK--PFKCVV--CKQFFATYSG 141
H THTGEK + A++ + H+ + K + C C + F ++
Sbjct: 63 HSLTHTGEKNFTCDSDGCDLRFTTKANMKK-HFNRFHNIKICVYVCHFENCGKAFKKHNQ 121
Query: 142 AYQHLRRTH 150
H + +H
Sbjct: 122 LKVH-QFSH 129
Score = 31.0 bits (71), Expect = 0.085
Identities = 6/37 (16%), Positives = 8/37 (21%), Gaps = 3/37 (8%)
Query: 116 NHYRKHTGRKPFKCVV--CKQFFATYSGAYQHLRRTH 150
K + C C + HL H
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHL-CKH 37
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 55.3 bits (134), Expect = 1e-10
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 22/90 (24%)
Query: 82 FVCYACDY------FSYNIGCMRSHIRTHTGEKPY-------------AHIIRNHYRKHT 122
FVC+ F + H+R HTGEKP+ ++ H R HT
Sbjct: 35 FVCHWGGCSRELRPFK-AQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHT 93
Query: 123 GRKPFKC--VVCKQFFATYSGAYQHLRRTH 150
G KP+ C C + F+ S +H RTH
Sbjct: 94 GEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 46.4 bits (111), Expect = 2e-07
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 17/69 (24%)
Query: 98 RSHIRTHTGEKPYA--------------HIIRNHYRKHTGRKPFKCVV--CKQFFATYSG 141
++H+R+HTGEKPY ++ R H+ KP+ C + C + + S
Sbjct: 86 KTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSS 145
Query: 142 AYQHLRRTH 150
+H+ +T
Sbjct: 146 LRKHV-KTV 153
Score = 29.9 bits (68), Expect = 0.18
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 13/37 (35%)
Query: 100 HIRTHTGEKPYA-------------HIIRNHYRKHTG 123
RTH+ EKPY +R H + G
Sbjct: 119 QNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 53.8 bits (130), Expect = 2e-10
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 16/67 (23%)
Query: 98 RSHIRTHTGEKPYA--------------HIIRNHYRKHTGRKPFKCVVCKQFFATYSGAY 143
++H+RTHTGEKPY + R HYRKHTG KPF+C VC + F+
Sbjct: 34 KAHLRTHTGEKPYKCTWEGCDWRFARSDELTR-HYRKHTGAKPFQCGVCNRSFSRSDHLA 92
Query: 144 QHLRRTH 150
H + H
Sbjct: 93 LH-MKRH 98
Score = 38.8 bits (91), Expect = 8e-05
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
Query: 95 GCMRSHIRTHTGEKPY-------AHIIRNHYRKHTGRKPFKCVV--CKQFFATYSGAYQH 145
G R H + P + ++ H R HTG KP+KC C FA +H
Sbjct: 7 GPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRH 66
Query: 146 LRRTH 150
R H
Sbjct: 67 -YRKH 70
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 54.1 bits (131), Expect = 2e-10
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 23/86 (26%)
Query: 85 YACDY------FSYNIGCMRSHIRTHTGEKPYA--------------HIIRNHYRKHTGR 124
+ C Y + ++ H R HTGEKPY + R H R+HTG
Sbjct: 7 FMCAYPGCNKRYFKL-SHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKR-HQRRHTGV 64
Query: 125 KPFKCVVCKQFFATYSGAYQHLRRTH 150
KPF+C C++ F+ H RTH
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTH-TRTH 89
Score = 36.7 bits (86), Expect = 5e-04
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 18/62 (29%)
Query: 105 TGEKPY--------------AHIIRNHYRKHTGRKPFKCVV--CKQFFATYSGAYQHLRR 148
+ ++P+ +H+ H RKHTG KP++C C++ F+ +H +R
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQM-HSRKHTGEKPYQCDFKDCERRFSRSDQLKRH-QR 59
Query: 149 TH 150
H
Sbjct: 60 RH 61
Score = 33.3 bits (77), Expect = 0.009
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 82 FVCYACD-YFSYNIGCMRSHIRTHTGEKPY 110
F C C FS + +++H RTHTGEKP+
Sbjct: 67 FQCKTCQRKFSRS-DHLKTHTRTHTGEKPF 95
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 52.8 bits (128), Expect = 3e-10
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 14/65 (21%)
Query: 98 RSHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQH 145
++H+R HTG KPY + + + H R H+ +PFKC +C S H
Sbjct: 25 KTHMRCHTGVKPYKCKTCDYAAADSSSLNK-HLRIHSDERPFKCQICPYASRNSSQLTVH 83
Query: 146 LRRTH 150
R+H
Sbjct: 84 -LRSH 87
Score = 47.4 bits (114), Expect = 3e-08
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 14/60 (23%)
Query: 103 THTGEKPY------------AHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ P+ + H R HTG KP+KC C A S +H R H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKT-HMRCHTGVKPYKCKTCDYAAADSSSLNKH-LRIH 59
Score = 45.1 bits (108), Expect = 2e-07
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 15/59 (25%)
Query: 84 CYACDY-FSYNIGCMRSHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
C CDY + + + H+R H+ E+P+ + + H R HTG
Sbjct: 39 CKTCDYAAADS-SSLNKHLRIHSDERPFKCQICPYASRNSSQLTV-HLRSHTGDSGPSS 95
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 51.7 bits (125), Expect = 8e-10
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 15/65 (23%)
Query: 100 HIRTHTGEKPY------------AHIIRNHYRKHTG--RKPFKCVVCKQFFATYSGAYQH 145
H +H+GEKPY + H R H G KP+ C C + F+ H
Sbjct: 26 HKLSHSGEKPYSCPVCGLRFKRKDRMSY-HVRSHDGSVGKPYICQSCGKGFSRPDHLNGH 84
Query: 146 LRRTH 150
+++ H
Sbjct: 85 IKQVH 89
Score = 45.2 bits (108), Expect = 3e-07
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 14/59 (23%)
Query: 104 HTGEKPY------------AHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+G H+ R H H+G KP+ C VC F H R+H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNR-HKLSHSGEKPYSCPVCGLRFKRKDRMSYH-VRSH 58
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 51.0 bits (123), Expect = 1e-09
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 14/61 (22%)
Query: 102 RTHTGEKPY------------AHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRT 149
+ + P A + H R H +PFKC C S +H+ +
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRI-HERIHCTDRPFKCNYCSFDTKQPSNLSKHM-KK 59
Query: 150 H 150
Sbjct: 60 F 60
Score = 40.6 bits (96), Expect = 8e-06
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 13/58 (22%)
Query: 84 CYACDYFSYNIGCMRSHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
C C Y + +R H R H ++P+ +++ + H +K G
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSK-HMKKFHGDMSGPS 68
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 53.2 bits (129), Expect = 1e-09
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 15/73 (20%)
Query: 90 FSYNIGCMRSHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKCVVCKQFFA 137
FS + + H RTHTGEKPY + R H R HTG KP+KC C + F+
Sbjct: 31 FSRS-DHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTR-HQRTHTGEKPYKCPECGKSFS 88
Query: 138 TYSGAYQHLRRTH 150
+ H +RTH
Sbjct: 89 QRANLRAH-QRTH 100
Score = 52.8 bits (128), Expect = 2e-09
Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 15/73 (20%)
Query: 90 FSYNIGCMRSHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKCVVCKQFFA 137
FS +R+H RTHTGEKPY AH+ H R HTG KP+KC C + F+
Sbjct: 87 FSQR-ANLRAHQRTHTGEKPYACPECGKSFSQLAHLRA-HQRTHTGEKPYKCPECGKSFS 144
Query: 138 TYSGAYQHLRRTH 150
+ H +RTH
Sbjct: 145 REDNLHTH-QRTH 156
Score = 52.8 bits (128), Expect = 2e-09
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 98 RSHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQH 145
+ GEKPY H+ H R HTG KP+KC C + F+ +H
Sbjct: 10 VAQAALEPGEKPYACPECGKSFSRSDHLAE-HQRTHTGEKPYKCPECGKSFSDKKDLTRH 68
Query: 146 LRRTH 150
+RTH
Sbjct: 69 -QRTH 72
Score = 52.4 bits (127), Expect = 2e-09
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 15/73 (20%)
Query: 90 FSYNIGCMRSHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKCVVCKQFFA 137
FS +R+H RTHTGEKPY ++ H R HTG KP+KC C + F+
Sbjct: 115 FSQL-AHLRAHQRTHTGEKPYKCPECGKSFSREDNLHT-HQRTHTGEKPYKCPECGKSFS 172
Query: 138 TYSGAYQHLRRTH 150
H +RTH
Sbjct: 173 RRDALNVH-QRTH 184
Score = 37.8 bits (89), Expect = 4e-04
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 13/41 (31%)
Query: 98 RSHIRTHTGEKPY------------AHIIRNHYRKHTGRKP 126
+H RTHTGEKPY + H R HTG+K
Sbjct: 150 HTHQRTHTGEKPYKCPECGKSFSRRDALNV-HQRTHTGKKT 189
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 49.8 bits (120), Expect = 3e-09
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 14/65 (21%)
Query: 98 RSHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQH 145
H +KPY ++ H HTG KP++C +C F + H
Sbjct: 6 HHHSHMTHSDKPYKCDRCQASFRYKGNLAS-HKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Query: 146 LRRTH 150
R H
Sbjct: 65 -TRIH 68
Score = 37.8 bits (89), Expect = 9e-05
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 13/42 (30%)
Query: 98 RSHIRTHTGEKPY------------AHIIRNHYRKHTGRKPF 127
SH HTGEKPY A++ H R H+G KP+
Sbjct: 34 ASHKTVHTGEKPYRCNICGAQFNRPANLKT-HTRIHSGEKPY 74
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 49.8 bits (120), Expect = 3e-09
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 14/63 (22%)
Query: 100 HIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLR 147
H+GEKPY + +++ H R HTG KP+KC+ C + F+ SG H +
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQ-HQRVHTGEKPYKCLECGKAFSQNSGLINH-Q 62
Query: 148 RTH 150
R H
Sbjct: 63 RIH 65
Score = 36.7 bits (86), Expect = 2e-04
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 13/40 (32%)
Query: 100 HIRTHTGEKPY------------AHIIRNHYRKHTGRKPF 127
H R HTGEKPY + +I H R HT
Sbjct: 33 HQRVHTGEKPYKCLECGKAFSQNSGLIN-HQRIHTSGPSS 71
Score = 29.4 bits (67), Expect = 0.11
Identities = 4/12 (33%), Positives = 4/12 (33%)
Query: 100 HIRTHTGEKPYA 111
H R HT
Sbjct: 61 HQRIHTSGPSSG 72
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 51.5 bits (124), Expect = 4e-09
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 19/114 (16%)
Query: 54 QCATSAELTQH-EIRTIESMIRTDPFRHKFVCYACD-YFSYNIGCMRSHIRTHTGEKPY- 110
+T EL H + + + + + C F + +HIR HTGEKP+
Sbjct: 34 TFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAK-YKLVNHIRVHTGEKPFP 92
Query: 111 ------------AHIIRNHYRKHTGRKPFKCVV--CKQFFATYSGAYQHLRRTH 150
+ ++ H R HTG KPFKC C + FA S +H H
Sbjct: 93 CPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKH-MHVH 145
Score = 36.9 bits (86), Expect = 8e-04
Identities = 9/72 (12%), Positives = 14/72 (19%), Gaps = 21/72 (29%)
Query: 99 SHIRTHTGEKPYA-----------HIIRNHYRKHTGRKPFK---------CVVCKQFFAT 138
S + H + H P + C + F
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKA 74
Query: 139 YSGAYQHLRRTH 150
H+ R H
Sbjct: 75 KYKLVNHI-RVH 85
Score = 33.8 bits (78), Expect = 0.009
Identities = 5/37 (13%), Positives = 10/37 (27%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQ 152
+ + C + F+T H+ H
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVG 51
Score = 31.1 bits (71), Expect = 0.081
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 100 HIRTHTGEKPYA 111
H+ HT +K
Sbjct: 141 HMHVHTSDKSGP 152
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 49.4 bits (119), Expect = 7e-09
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 14/66 (21%)
Query: 100 HIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLR 147
H RTHT E+PY H+ H H+ KPFKC C + F H +
Sbjct: 36 HERTHTDERPYTCDICHKAFRRQDHLRD-HRYIHSKEKPFKCQECGKGFCQSRTLAVH-K 93
Query: 148 RTHGQE 153
H Q
Sbjct: 94 TLHMQT 99
Score = 49.0 bits (118), Expect = 1e-08
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 14/63 (22%)
Query: 100 HIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLR 147
+K + +++ H R HT +P+ C +C + F H R
Sbjct: 8 GRLPSKTKKEFICKFCGRHFTKSYNLLI-HERTHTDERPYTCDICHKAFRRQDHLRDH-R 65
Query: 148 RTH 150
H
Sbjct: 66 YIH 68
Score = 41.7 bits (99), Expect = 6e-06
Identities = 8/44 (18%), Positives = 11/44 (25%), Gaps = 13/44 (29%)
Query: 98 RSHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
R H H+ EKP+ + H H
Sbjct: 62 RDHRYIHSKEKPFKCQECGKGFCQSRTLAV-HKTLHMQTSSPTA 104
Score = 33.9 bits (79), Expect = 0.005
Identities = 9/35 (25%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+K F C C + F H RTH
Sbjct: 7 GGRLPSKTKKEFICKFCGRHFTKSYNLLIH-ERTH 40
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 49.8 bits (120), Expect = 8e-09
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 16/68 (23%)
Query: 98 RSHIRTHTGEKPY-------------AHIIRNHYRKHTGRKPFKCVV--CKQFFATYSGA 142
+ H HTGEKP+ +R H R HTG +P+ C C + FA +
Sbjct: 51 KRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNL 110
Query: 143 YQHLRRTH 150
H TH
Sbjct: 111 KSH-ILTH 117
Score = 41.3 bits (98), Expect = 1e-05
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 15/45 (33%)
Query: 98 RSHIRTHTGEKPY--------------AHIIRNHYRKHTGRKPFK 128
R+H+R HTG++PY ++ H H K +
Sbjct: 81 RTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKS-HILTHAKAKNNQ 124
Score = 29.4 bits (67), Expect = 0.23
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 26/72 (36%)
Query: 85 YACDY------FSYNIGCMRSHIRTHTGEKPYAHIIRNHYRKHTGRKPFKCVVCKQFFAT 138
AC + F N MR H+ TH G + + C C + F
Sbjct: 6 IACPHKGCTKMFRDN-SAMRKHLHTH-GPRVH-----------------VCAECGKAFVE 46
Query: 139 YSGAYQHLRRTH 150
S +H + H
Sbjct: 47 SSKLKRH-QLVH 57
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 48.2 bits (116), Expect = 1e-08
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 14/63 (22%)
Query: 100 HIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLR 147
+ Y + + + H R HTG KP+KC C + F S H
Sbjct: 9 SEWQQRERRRYKCDECGKSFSHSSDLSK-HRRTHTGEKPYKCDECGKAFIQRSHLIGH-H 66
Query: 148 RTH 150
R H
Sbjct: 67 RVH 69
Score = 40.9 bits (97), Expect = 6e-06
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 13/42 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFK 128
H RTHTGEKPY +H+I H+R HTG P
Sbjct: 36 KHRRTHTGEKPYKCDECGKAFIQRSHLIG-HHRVHTGSGPSS 76
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 48.2 bits (116), Expect = 1e-08
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 14/63 (22%)
Query: 100 HIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLR 147
H+ H+ +PY + + + H HTG KP KC VC + F+ S H
Sbjct: 20 HLLIHSDTRPYPCQYCGKRFHQKSDMKK-HTFIHTGEKPHKCQVCGKAFSQSSNLITH-S 77
Query: 148 RTH 150
R H
Sbjct: 78 RKH 80
Score = 32.8 bits (76), Expect = 0.009
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 13/36 (36%)
Query: 100 HIRTHTGEKPY------------AHIIRNHYRKHTG 123
H HTGEKP+ +++I H RKHTG
Sbjct: 48 HTFIHTGEKPHKCQVCGKAFSQSSNLIT-HSRKHTG 82
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 49.0 bits (118), Expect = 1e-08
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 13/60 (21%)
Query: 102 RTHTGEKPY-----------AHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+G+K Y + R H H G +P+ C VC + F H + H
Sbjct: 3 SGSSGDKLYPCQCGKSFTHKSQRDR-HMSMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIH 60
Score = 46.3 bits (111), Expect = 1e-07
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 13/58 (22%)
Query: 100 HIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQH 145
H+ H G +PY H++ H + HTG KP++C +C + F ++H
Sbjct: 28 HMSMHLGLRPYGCGVCGKKFKMKHHLVG-HMKIHTGIKPYECNICAKRFMWRDSFHRH 84
Score = 42.8 bits (102), Expect = 3e-06
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 9/51 (17%)
Query: 100 HIRTHTGEKPY---------AHIIRNHYRKHTGRKPFKCVVCKQFFATYSG 141
H++ HTG KPY H + K ++ +Q SG
Sbjct: 56 HMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTKSYEAAKAEQNTTEASG 106
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 46.7 bits (112), Expect = 5e-08
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 16/67 (23%)
Query: 98 RSHIRTHTGEKPYA------------HIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQH 145
+HIRTHTGEKP+A R H P ++ +
Sbjct: 20 TTHIRTHTGEKPFACDICGRKFARSDERKR-HRDIQHI-LPILEDKVEELLSKNYHLENE 77
Query: 146 LR--RTH 150
+ +
Sbjct: 78 VARLKKL 84
Score = 29.8 bits (68), Expect = 0.11
Identities = 8/59 (13%), Positives = 13/59 (22%), Gaps = 17/59 (28%)
Query: 82 FVCYACD-YFSYNIGCMRSHIRTHTGEKPYA--------------HIIRNHYRKHTGRK 125
F C C F+ + + H P +K G +
Sbjct: 32 FACDICGRKFARS-DERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 47.5 bits (114), Expect = 5e-08
Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 18/85 (21%)
Query: 82 FVCYACD-YFSYNIGCMRSHIR---THTGEKPY------------AHIIRNHYRKHTGRK 125
F C C + + H + E+ + + H HTG
Sbjct: 36 FECPKCGKCYFRK-ENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRL-HMVSHTGEM 93
Query: 126 PFKCVVCKQFFATYSGAYQHLRRTH 150
P+KC C Q F H+ + H
Sbjct: 94 PYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 46.3 bits (111), Expect = 2e-07
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 17/68 (25%)
Query: 98 RSHIRTHTGEKPY------------AHIIRNHYRK---HTGRKPFKCVVCKQFFATYSGA 142
+ H R HTGEKP+ +++ H + + + F C VC++ F
Sbjct: 24 KVHNRKHTGEKPFECPKCGKCYFRKENLLE-HEARNCMNRSEQVFTCSVCQETFRRRMEL 82
Query: 143 YQHLRRTH 150
H +H
Sbjct: 83 RLH-MVSH 89
Score = 42.1 bits (100), Expect = 7e-06
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 13/58 (22%)
Query: 104 HTGEKPY------------AHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRT 149
+G ++ H RKHTG KPF+C C + + +H R
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKV-HNRKHTGEKPFECPKCGKCYFRKENLLEHEARN 58
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 12/40 (30%)
Query: 98 RSHIRTHTGEKPY------------AHIIRNHYRKHTGRK 125
R H+ +HTGE PY + + + H+G
Sbjct: 83 RLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 46.4 bits (111), Expect = 7e-08
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 18/72 (25%)
Query: 95 GCMRSHIRTHTGEKPY------------AHIIRNHYRKHTG----RKPFKCVVCKQFFAT 138
G S RTHTGEKPY + H++++ F C C + F
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDM-HFKRYHDPNFVPAAFVCSKCGKTFTR 59
Query: 139 YSGAYQHLRRTH 150
+ +H
Sbjct: 60 RNTMARH-ADNC 70
Score = 38.3 bits (90), Expect = 7e-05
Identities = 4/51 (7%), Positives = 9/51 (17%), Gaps = 17/51 (33%)
Query: 98 RSHIRTHTGE----KPY------------AHIIRNHYRKHTGRKPFKCVVC 132
H + + + + R H G +
Sbjct: 32 DMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMAR-HADNCAGPDGVEGENS 81
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 115 RNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHG 151
+ R HTG KP+ C C + F H +R H
Sbjct: 4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 40
Score = 31.7 bits (73), Expect = 0.019
Identities = 8/30 (26%), Positives = 9/30 (30%), Gaps = 2/30 (6%)
Query: 82 FVCYACD-YFSYNIGCMRSHIRTHTGEKPY 110
FVC C F+ M H G
Sbjct: 48 FVCSKCGKTFTRR-NTMARHADNCAGPDGV 76
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 45.6 bits (109), Expect = 1e-07
Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 15/64 (23%)
Query: 102 RTHTGEKPY------------AHIIRNHYR--KHTGRKPFKCVVCKQFFATYSGAYQHLR 147
T GE Y ++ R HY K + C C + F H++
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCR-HYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Query: 148 RTHG 151
H
Sbjct: 62 IIHK 65
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 44.4 bits (106), Expect = 2e-07
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEK Y +++ H R H+G KP
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLK-HERLHSGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ TG K + C C + F+ +H R H
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKH-ERLH 35
Score = 29.8 bits (68), Expect = 0.054
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 90 FSYNIGCMRSHIRTHTGEKPY 110
FS C+ H R H+GEKP
Sbjct: 22 FSRA-PCLLKHERLHSGEKPS 41
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.4 bits (106), Expect = 2e-07
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY +H+ R H R HTG KP
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNR-HRRIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.002
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KP+ C C + F S +H RR H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRH-RRIH 35
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 44.2 bits (105), Expect = 2e-07
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 15/45 (33%)
Query: 99 SHIRTHTGEKPYA--------------HIIRNHYRKHTGRKPFKC 129
S + TGEKP+A + R H R H+G KP
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSR-HRRSHSGVKPSGP 45
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 44.0 bits (105), Expect = 2e-07
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + +GE+PY +H+I H ++H K
Sbjct: 2 SSGSSGSGERPYGCNECGKNFGRHSHLIE-HLKRHFREKSSGP 43
Score = 32.1 bits (74), Expect = 0.007
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE 153
+G +P+ C C + F +S +H + H +E
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEH-LKRHFRE 38
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.0 bits (105), Expect = 2e-07
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKP+ +++I H R HTG KP
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIV-HQRTHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ TG KPF+C C++ F T S H +RTH
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVH-QRTH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.7 bits (104), Expect = 3e-07
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + +GEKPY + + H R HTG KP
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSA-HQRTHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+G KP+ C C + F+ S H +RTH
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAH-QRTH 35
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.6 bits (104), Expect = 3e-07
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKP+ + + R H HT KP
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNR-HSMVHTAEKPSGP 43
Score = 35.9 bits (84), Expect = 2e-04
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ TG KPFKC +C + F S +H H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRH-SMVH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 43.7 bits (104), Expect = 3e-07
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGE+P+ AH+I+ H R HTG KP
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQ-HQRIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.002
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ TG +P KC C + F + QH +R H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQH-QRIH 35
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 43.7 bits (104), Expect = 3e-07
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TG++PY + +I H R HTG KP
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLIC-HRRSHTGEKPSGP 43
Score = 36.4 bits (85), Expect = 2e-04
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG++P++C+ C + F T S H RR+H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICH-RRSH 35
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.6 bits (104), Expect = 4e-07
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + +GEKPY +H+ H+R HTG KP
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTN-HWRIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.002
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ +G KP+KC C + F S H R H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNH-WRIH 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.7 bits (104), Expect = 4e-07
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + GEK Y +H+ H R HTG KP
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQT-HQRVHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 5e-04
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
G K +KC VC + F+ S H +R H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH-QRVH 35
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 4e-07
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY +++I+ H + HT +KP
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIK-HQKIHTKQKPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ TG KP+ C C + F S +H ++ H
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKH-QKIH 35
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 4e-07
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGE P+ ++I H + HTG +P
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLII-HQKIHTGERPSGP 43
Score = 35.6 bits (83), Expect = 3e-04
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ TG PF C C + F + H ++ H
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIH-QKIH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 4e-07
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY + + H + HTG +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRI-HQKCHTGERHSGP 43
Score = 34.8 bits (81), Expect = 7e-04
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ TG KP+KC C + F S H ++ H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIH-QKCH 35
Score = 30.2 bits (69), Expect = 0.032
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 84 CYACD-YFSYNIGCMRSHIRTHTGEKPY 110
C C F++ +R H + HTGE+
Sbjct: 15 CSDCGKSFTWK-SRLRIHQKCHTGERHS 41
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 4e-07
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + +G+KPY H+ + H R HTG +
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQ-HKRVHTGERSSGP 43
Score = 32.5 bits (75), Expect = 0.004
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+G+KP++C C++ F QH +R H
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQH-KRVH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 43.3 bits (103), Expect = 5e-07
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY + H+ HTG KP
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYT-HHMVHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 5e-04
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ TG KP+KC C + F Y H H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTH-HMVH 35
Score = 29.0 bits (66), Expect = 0.092
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 98 RSHIRTHTGEKPY 110
+H HTGEKP
Sbjct: 29 YTHHMVHTGEKPS 41
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 5e-07
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TG+KPY +H+ R H HTG KP
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLAR-HRGIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.006
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG+KP+KC C + F S +H R H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARH-RGIH 35
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 5e-07
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY +H+ R H HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLAR-HRGIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.004
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KP+KC C + F S +H R H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH-RGIH 35
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 43.3 bits (103), Expect = 5e-07
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + G PY ++ H R HT KP
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLV-HQRMHTREKPSGP 43
Score = 32.5 bits (75), Expect = 0.005
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
G P+KC C++ F+ H +R H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH-QRMH 35
Score = 31.0 bits (71), Expect = 0.019
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 84 CYACD-YFSYNIGCMRSHIRTHTGEKPY 110
C C+ FS + H R HT EKP
Sbjct: 15 CSQCEKSFSGK-LRLLVHQRMHTREKPS 41
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.2 bits (103), Expect = 5e-07
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY +H++R H HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVR-HRGIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.002
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ TG KP+KC C + F S +H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRH-RGIH 35
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 5e-07
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + GEKPY +++I H R H+G KP
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLII-HMRTHSGEKPSGP 43
Score = 34.4 bits (80), Expect = 8e-04
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ G KP+ C C + F++ S H RTH
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIH-MRTH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 5e-07
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY +H+ R H R HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLAR-HRRVHTGGKPSGP 43
Score = 33.3 bits (77), Expect = 0.003
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KP+KC C + F S +H RR H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH-RRVH 35
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 5e-07
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + +GEKPY A ++R H R HTG KP
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVR-HQRIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.005
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+G KP+ C C + F + +H +R H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRH-QRIH 35
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 43.3 bits (103), Expect = 5e-07
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 11/42 (26%)
Query: 99 SHIRTHTGEKPY-----------AHIIRNHYRKHTGRKPFKC 129
S + GEK + A +R H H G KP
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.004
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
G K +KC C F+ S H + H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH-QNVH 35
Score = 32.5 bits (75), Expect = 0.005
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 84 CYACD-YFSYNIGCMRSHIRTHTGEKPY 110
C CD FS +R H H GEKP
Sbjct: 15 CRECDMCFSQA-SSLRLHQNVHVGEKPS 41
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 43.3 bits (103), Expect = 5e-07
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + +GEKP+ + H R H+G KP
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYS-HQRSHSGEKPSGP 43
Score = 37.9 bits (89), Expect = 5e-05
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ +G KPFKC C + F T S Y H +R+H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSH-QRSH 35
Score = 30.2 bits (69), Expect = 0.035
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 90 FSYNIGCMRSHIRTHTGEKPY 110
F N SH R+H+GEKP
Sbjct: 22 FYTN-SQCYSHQRSHSGEKPS 41
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 42.9 bits (102), Expect = 6e-07
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKP+ + + H++ HTG KP
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNV-HHKLHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 4e-04
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ TG KPFKCV C + F+ S H + H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH-HKLH 35
Score = 29.4 bits (67), Expect = 0.075
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 98 RSHIRTHTGEKPY 110
H + HTGEKP
Sbjct: 29 NVHHKLHTGEKPS 41
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 6e-07
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKP+ + +I H R HTG P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIV-HQRIHTGENPSGP 43
Score = 32.5 bits (75), Expect = 0.005
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KP +C C + F+ S H +R H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVH-QRIH 35
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 6e-07
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + +GEKP+ H+ H R HTG KP
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLAS-HLRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.004
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+G KPFKC C + F H R H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASH-LRIH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 6e-07
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY + + R H R HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLAR-HQRIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.002
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ TG KP+KC C + F+ S +H +R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARH-QRIH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 6e-07
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY +H+ H R HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLAN-HQRIHTGVKPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KP+KC C + F S H +R H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANH-QRIH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 6e-07
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY A + + H R H+G KP
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQ-HQRVHSGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KP++C VC++ F+ ++ QH +R H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQH-QRVH 35
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 7e-07
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKP + +I H R H K
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIM-HQRTHVDDKHSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KP KC C + F S H +RTH
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMH-QRTH 35
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 42.9 bits (102), Expect = 7e-07
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TG KPY +++I H R HTG
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLII-HTRTHTGESGPSS 43
Score = 32.8 bits (76), Expect = 0.003
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ TG KP+ C C + F + S H RTH
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIH-TRTH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 7e-07
Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGE PY +I H R H G KP
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLIS-HQRTHAGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.002
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG P++C C + F+ H +RTH
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISH-QRTH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 42.9 bits (102), Expect = 7e-07
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY H+I+ H R HTG KP
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQ-HQRVHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.012
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KP++C C + F+ + QH +R H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQH-QRVH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 42.9 bits (102), Expect = 7e-07
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY + +++ H R H+G KP
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLK-HQRVHSGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.004
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KP+ C C + F S +H +R H
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKH-QRVH 35
Score = 29.5 bits (67), Expect = 0.072
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 90 FSYNIGCMRSHIRTHTGEKPY 110
F + C+ H R H+GEKP
Sbjct: 22 FRWA-SCLLKHQRVHSGEKPS 41
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 7e-07
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + GEKPY + + H+ HT KP
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQ-HWITHTREKPSGP 43
Score = 34.1 bits (79), Expect = 0.001
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
G KP++C C + F+ QH TH
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQH-WITH 35
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 7e-07
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + +GE+P+ +H+ H R H+ K
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAG-HLRLHSREKSSGP 43
Score = 33.3 bits (77), Expect = 0.003
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+G +PFKC C + F S H R H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGH-LRLH 35
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 7e-07
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY +H+ R H HTG KP
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLAR-HQLIHTGEKPSGP 43
Score = 32.4 bits (75), Expect = 0.005
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KP+KC C + F S +H + H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARH-QLIH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 8e-07
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY ++ H + HTG +P
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDM-HQKVHTGERPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KP+KC C + + + H ++ H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMH-QKVH 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 8e-07
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + +GEKP+ + + H R HTG KP
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHS-HQRVHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 4e-04
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ +G KPFKC C + F S + H +R H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSH-QRVH 35
Score = 29.4 bits (67), Expect = 0.074
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 98 RSHIRTHTGEKPY 110
SH R HTGEKP
Sbjct: 29 HSHQRVHTGEKPS 41
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 43.0 bits (102), Expect = 8e-07
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 12/52 (23%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKCVVCKQFFAT 138
S + + KPY H+ + + HT +P KC V ++
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 34.9 bits (81), Expect = 0.001
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ + KP+ C C + F+ H+++ H
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.6 bits (101), Expect = 8e-07
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY + + H R HTG++P
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQ-HQRLHTGQRPSGP 43
Score = 35.2 bits (82), Expect = 5e-04
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ TG KP+KC+ C + F S QH +R H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQH-QRLH 35
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 8e-07
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + +GEKPY H+ H R HTG +P
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNE-HRRIHTGYRPSGP 43
Score = 32.9 bits (76), Expect = 0.004
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+G KP+KC C + F ++ +H RR H
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEH-RRIH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 8e-07
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY +H+++ H+ H+G +P
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQ-HHSVHSGERPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KP+KC VC + F S QH H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQH-HSVH 35
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 8e-07
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY +++ R H R HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSR-HQRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 5e-04
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ TG KP+KC C + F S +H +R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRH-QRIH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 42.5 bits (101), Expect = 8e-07
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TG KPY + +I H R HTG KP
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIV-HQRSHTGVKPSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ TG KP+ C C + F+ S H +R+H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH-QRSH 35
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 9e-07
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKP+ H+ + H R HTG KP
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQ-HQRVHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.004
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KPFKC C + + QH +R H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQH-QRVH 35
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 9e-07
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY AH+ + H + HTG KP
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQ-HQKTHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KP++C VC + F + QH ++TH
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQH-QKTH 35
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 9e-07
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY + + H R HTG KP
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQE-HQRIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KP+ C C + F S +H +R H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEH-QRIH 35
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 1e-06
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + + EKPY ++ H R H G K
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDM-HQRVHMGEKTSGP 43
Score = 36.3 bits (85), Expect = 2e-04
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ + KP+KC C + + H +R H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMH-QRVH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 42.5 bits (101), Expect = 1e-06
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY ++++ H R HTG
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMV-HQRTHTGESGPSS 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KP++C C++ F T S H +RTH
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVH-QRTH 35
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 1e-06
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + +GEKP+ +H+ H R HTG KP
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHS-HQRVHTGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.002
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+G KPF+C C + F S + H +R H
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSH-QRVH 35
Score = 28.7 bits (65), Expect = 0.11
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 97 MRSHIRTHTGEKPY 110
+ SH R HTGEKP
Sbjct: 28 LHSHQRVHTGEKPS 41
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 1e-06
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TG KPY + + R H R HTG KP
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLAR-HQRVHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.005
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KP++C C + F+ S +H +R H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARH-QRVH 35
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 1e-06
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGE+PY +++I+ H + HTG KP
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIK-HQKIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 6e-04
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG +P+ C VC + F S +H ++ H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKH-QKIH 35
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 1e-06
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGE+ Y + +I H R HTG KP
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIM-HQRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.003
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG + ++C C + FA S H +R H
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMH-QRIH 35
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 1e-06
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY + + H + HTG +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHI-HQQSHTGERHSGP 43
Score = 35.2 bits (82), Expect = 6e-04
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ TG KP+KC C + F SG + H +++H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH-QQSH 35
Score = 29.8 bits (68), Expect = 0.046
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 98 RSHIRTHTGEKPY 110
H ++HTGE+
Sbjct: 29 HIHQQSHTGERHS 41
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 1e-06
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + G+K + + + H R HTG KP
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTV-HQRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
G+K FKC CK+ F S H +R H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH-QRIH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 1e-06
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKP+ + + H R HTG KP
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQ-HRRIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 4e-04
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KPF C+ C + F+ + G QH RR H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQH-RRIH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 42.1 bits (100), Expect = 1e-06
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEK Y + + + H + HTG KP
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQ-HQKIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.002
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG K +KC C + F+ S QH ++ H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQH-QKIH 35
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 42.1 bits (100), Expect = 1e-06
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKP+ + + H R HTG KP
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLAT-HQRIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.005
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KPF+C C + F+ S H +R H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATH-QRIH 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 1e-06
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY + + H R HTG P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHV-HQRIHTGENPSGP 43
Score = 32.9 bits (76), Expect = 0.004
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KP++C C + F S + H +R H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH-QRIH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 42.1 bits (100), Expect = 1e-06
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TG+KP+ +++ H R HTG K
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVT-HQRIHTGEKSGPS 43
Score = 33.3 bits (77), Expect = 0.003
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ TG+KPF+C C + F H +R H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTH-QRIH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 1e-06
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + +GEKPY + H R HTG K
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDF-HQRVHTGEKLSGP 43
Score = 34.4 bits (80), Expect = 9e-04
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ +G KP+KCV C + + H +R H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFH-QRVH 35
Score = 28.7 bits (65), Expect = 0.11
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 98 RSHIRTHTGEKPY 110
H R HTGEK
Sbjct: 29 DFHQRVHTGEKLS 41
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 1e-06
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY A++ + H R HTG KP
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQ-HQRIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.002
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ TG KP++C C + FA + QH +R H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQH-QRIH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 2e-06
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGE+ Y + + H R H G KP
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSM-HQRIHRGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.006
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG + ++C C + F S H +R H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH-QRIH 35
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 2e-06
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TG K + + + H + HTG KP
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSM-HQKIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.002
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ TG K F+C C + F S H ++ H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMH-QKIH 35
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 2e-06
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY +++ H + HTG KP
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFT-HQKIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KP++C C + F S + H ++ H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTH-QKIH 35
Score = 28.6 bits (65), Expect = 0.13
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 98 RSHIRTHTGEKPY 110
+H + HTGEKP
Sbjct: 29 FTHQKIHTGEKPS 41
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 2e-06
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY +++ H HTG KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTT-HQVIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.002
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KP+KC C + F +S H + H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTH-QVIH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.8 bits (99), Expect = 2e-06
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY + + H H+G KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAI-HQATHSGEKPSGP 43
Score = 34.1 bits (79), Expect = 0.001
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KP+KC C + F S H + TH
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIH-QATH 35
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 2e-06
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TG KPY + + H HTG KP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTT-HQVIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ TG KP+ C C + F+ YS H + H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH-QVIH 35
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 2e-06
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY + H R H+G+KP
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSV-HQRIHSGKKPSGP 43
Score = 33.3 bits (77), Expect = 0.003
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KP++C VC + F+ H +R H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVH-QRIH 35
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 41.8 bits (99), Expect = 2e-06
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 12/43 (27%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TG+KPY +IR+ HTG KP
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 38.3 bits (90), Expect = 3e-05
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ TG+KP++C+ C + F + +H R H
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 2e-06
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY AH+ + H R HT
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQ-HLRVHTQETLSGP 43
Score = 33.6 bits (78), Expect = 0.002
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE 153
+ TG KP+ C VC + F + QH R H QE
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQH-LRVHTQE 38
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 42.4 bits (100), Expect = 2e-06
Identities = 11/65 (16%), Positives = 16/65 (24%), Gaps = 14/65 (21%)
Query: 104 HTGEKPYA-----------HIIRNHYRKHT---GRKPFKCVVCKQFFATYSGAYQHLRRT 149
+G + H RKH F C C + F H ++
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 150 HGQES 154
H
Sbjct: 62 HPALL 66
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 2e-06
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 11/42 (26%)
Query: 99 SHIRTHTGEKPY-----------AHIIRNHYRKHTGRKPFKC 129
S + TGEKP+ + + H R H P
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 34.9 bits (81), Expect = 6e-04
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE 153
TG KPF+C C F+ ++HL R+H +
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHL-RSHERT 38
Score = 32.2 bits (74), Expect = 0.007
Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 90 FSYNIGCMRSHIRTHTGEKPY 110
FS++ + H+R+H P
Sbjct: 22 FSWS-CSLFKHLRSHERTDPS 41
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.3 bits (98), Expect = 2e-06
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY + + H R HTG KP
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTV-HQRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 8e-04
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KP+KC VC + F S H +R H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH-QRIH 35
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 42.2 bits (100), Expect = 3e-06
Identities = 6/53 (11%), Positives = 15/53 (28%), Gaps = 15/53 (28%)
Query: 98 RSHIR-THTGEKPY-------------AHIIRNHYRKHTGRKPFKCVVC-KQF 135
H + H +K + ++ H + H+ + + C
Sbjct: 26 NHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 37.9 bits (89), Expect = 1e-04
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 17/63 (26%)
Query: 104 HTGEKPY-------------AHIIRNHYR-KHTGRKPFKC--VVCKQFFATYSGAYQHLR 147
+G + +H + +H +K F C C + F +H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH-M 60
Query: 148 RTH 150
+ H
Sbjct: 61 KLH 63
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 3e-06
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY + + H + HTG KP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHV-HQQIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.003
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KP++C +C + F S + H ++ H
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVH-QQIH 35
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 3e-06
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGEKPY + + H HTG+KP
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTT-HQAIHTGKKPSGP 43
Score = 32.5 bits (75), Expect = 0.005
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG KP++C C + F+ S H + H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTH-QAIH 35
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 40.9 bits (97), Expect = 3e-06
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + TGE PY ++ H + H+G+
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVS-HQKTHSGQSGPSS 43
Score = 31.3 bits (72), Expect = 0.012
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
TG P++C C + F+ H ++TH
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSH-QKTH 35
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 40.6 bits (96), Expect = 4e-06
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + +GEKPY + +I H R H G
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIV-HERTHAGVSGPSS 43
Score = 33.3 bits (77), Expect = 0.002
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ +G KP++C C + F S H RTH
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVH-ERTH 35
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 40.6 bits (96), Expect = 5e-06
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + + K + +H+ + H R HTG KP
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQ-HQRIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.003
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE 153
+ + K +C C + F S QH +R H E
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH-QRIHTGE 38
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 40.2 bits (95), Expect = 6e-06
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + GE+ + ++ I+ H R HTG KP
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQ-HRRIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 8e-05
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ G + +C C +FF S QH RR H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH-RRIH 35
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 40.2 bits (95), Expect = 9e-06
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 112 HIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
H+ R HYR HT KP+ C +C + F +H ++ H
Sbjct: 17 HLKR-HYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 39.4 bits (93), Expect = 1e-05
Identities = 9/40 (22%), Positives = 11/40 (27%), Gaps = 13/40 (32%)
Query: 102 RTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
+GE PY +I H R H G
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLIS-HQRTHAGESGPSS 41
Score = 29.8 bits (68), Expect = 0.052
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 119 RKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+G P++C C + F H +RTH
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISH-QRTH 33
Score = 29.4 bits (67), Expect = 0.059
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 99 SHIRTHTGEKPY 110
SH RTH GE
Sbjct: 28 SHQRTHAGESGP 39
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 40.0 bits (94), Expect = 1e-05
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 18/68 (26%)
Query: 99 SHIRTH--TGEKPYA--------------HIIRNHYRKHTGRKPFKCVVCKQFFATYSGA 142
+++ + +PYA + R H R HTG+KPF+C +C + F+
Sbjct: 7 NNLLNYVVPKMRPYACPVESCDRRFSRSDELTR-HIRIHTGQKPFQCRICMRNFSRSDHL 65
Query: 143 YQHLRRTH 150
H RTH
Sbjct: 66 TTH-IRTH 72
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 38.7 bits (91), Expect = 3e-05
Identities = 12/40 (30%), Positives = 14/40 (35%), Gaps = 13/40 (32%)
Query: 100 HIRTHTGEKPY------------AHIIRNHYRKHTGRKPF 127
+ GEKPY AH+ H HTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRA-HVLIHTGSGPS 40
Score = 33.3 bits (77), Expect = 0.002
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 97 MRSHIRTHTGEKPYA 111
+R+H+ HTG P +
Sbjct: 27 LRAHVLIHTGSGPSS 41
Score = 32.9 bits (76), Expect = 0.003
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
G KP+KC C F + H H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAH-VLIH 34
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 37.9 bits (89), Expect = 4e-05
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 13/40 (32%)
Query: 102 RTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
+GEKP+ ++++ H + H KP
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLV-HQQTHAEEKPSGP 41
Score = 31.4 bits (72), Expect = 0.013
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 121 HTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+G KPF C C++ F++ S H ++TH
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVH-QQTH 33
Score = 30.2 bits (69), Expect = 0.028
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 100 HIRTHTGEKPY 110
H +TH EKP
Sbjct: 29 HQQTHAEEKPS 39
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 37.5 bits (88), Expect = 7e-05
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 11/40 (27%)
Query: 99 SHIRTHTGEKPY-----------AHIIRNHYRKHTGRKPF 127
+ GEKPY +++H R HTG P
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 36.7 bits (86), Expect = 1e-04
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 85 YACDY----FSYNIGCMRSHIRTHTGEKPYA 111
Y C+ F + ++SH+R HTG P +
Sbjct: 12 YPCEICGTRFRHL-QTLKSHLRIHTGSGPSS 41
Score = 32.5 bits (75), Expect = 0.004
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
G KP+ C +C F HL R H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL-RIH 34
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 37.2 bits (87), Expect = 8e-05
Identities = 12/40 (30%), Positives = 14/40 (35%), Gaps = 13/40 (32%)
Query: 100 HIRTHTGEKPY------------AHIIRNHYRKHTGRKPF 127
+ GEKPY +I H R HTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIV-HIRVHTGSGPS 40
Score = 33.3 bits (77), Expect = 0.002
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
G KP++C C + F+ H R H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVH-IRVH 34
Score = 31.4 bits (72), Expect = 0.013
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 85 YACD----YFSYNIGCMRSHIRTHTGEKPYA 111
Y CD FS G + HIR HTG P +
Sbjct: 12 YRCDQCGKAFSQK-GSLIVHIRVHTGSGPSS 41
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 36.4 bits (85), Expect = 2e-04
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 11/42 (26%)
Query: 99 SHIRTHTGEKPY-----------AHIIRNHYRKHTGRKPFKC 129
S + +GEK + +R H R H G K
Sbjct: 2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 31.4 bits (72), Expect = 0.012
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+G K C C + F S H +R H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH-QRVH 35
Score = 28.7 bits (65), Expect = 0.13
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 85 YACDY----FSYNIGCMRSHIRTHTGEKPY 110
+ CD F Y +R H R H GEK
Sbjct: 13 HTCDECGKNFCYI-SALRIHQRVHMGEKCS 41
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 34.5 bits (80), Expect = 0.001
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 13/43 (30%)
Query: 99 SHIRTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
S + T K Y H+ R H + HT +
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTR-HQKIHTRKSGPSS 43
Score = 31.0 bits (71), Expect = 0.016
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQES 154
T K + C C + F +H ++ H ++S
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRH-QKIHTRKS 39
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 34.2 bits (79), Expect = 0.001
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRR 148
R TG KPF+C C + F+ H +R
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 33.5 bits (77), Expect = 0.004
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 18/69 (26%)
Query: 98 RSHIRTHTGEKPYA--------------HIIRNHYRKHTGRKPFKCVV--CKQFFATYSG 141
+ + + H+ + H R HTG KPF C C++ FA
Sbjct: 6 SGPQIDSSRIRSHICSHPGCGKTYFKSSHL-KAHTRTHTGEKPFSCSWKGCERRFARSDE 64
Query: 142 AYQHLRRTH 150
+H RRTH
Sbjct: 65 LSRH-RRTH 72
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 32.9 bits (75), Expect = 0.004
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 116 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQES 154
+ G PFKC C + F + QH RTH ++S
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQH-ERTHARKS 39
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 32.5 bits (75), Expect = 0.005
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 13/38 (34%)
Query: 102 RTHTGEKPY------------AHIIRNHYRKHTGRKPF 127
+G++ Y + H R HTG P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTL-HERIHTGSGPS 39
Score = 29.8 bits (68), Expect = 0.044
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 100 HIRTHTGEKPYA 111
H R HTG P +
Sbjct: 29 HERIHTGSGPSS 40
Score = 26.4 bits (59), Expect = 0.82
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 119 RKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+G++ ++C C + F H R H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLH-ERIH 33
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 32.3 bits (74), Expect = 0.006
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 121 HTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQES 154
+G KP+ C CK+ F+ + QH ++ H +S
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQH-QKMHTVKS 37
Score = 31.5 bits (72), Expect = 0.011
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 13/40 (32%)
Query: 102 RTHTGEKPY------------AHIIRNHYRKHTGRKPFKC 129
+GEKPY +++ H + HT +
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQ-HQKMHTVKSGPSS 41
Score = 23.4 bits (51), Expect = 9.7
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 82 FVCYACD-YFSYNIGCMRSHIRTHTGEKPYA 111
+ C C FS N ++ H + HT + +
Sbjct: 11 YSCAECKETFSDNNRLVQ-HQKMHTVKSGPS 40
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 33.6 bits (76), Expect = 0.007
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ TG F+C C + T H+ T
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETG 43
Score = 30.1 bits (67), Expect = 0.11
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 108 KPYAHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQESI 155
KP + K +K KC+ C F + H+ +T + +
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKV 109
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 32.7 bits (74), Expect = 0.007
Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 5/63 (7%)
Query: 95 GCMRSHIRTHTGEKPYA----HIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
G + H G++ II + RK C C++ + +
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQEAALNKD-EGNE 62
Query: 151 GQE 153
+
Sbjct: 63 SGK 65
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 32.4 bits (73), Expect = 0.009
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 114 IRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHG 151
++ H R HT +P+ C C F T +H++
Sbjct: 17 LKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 28.9 bits (64), Expect = 0.14
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 68 TIESMIRTDPFRHKFVCYACDYFSYNIGCMRSHIRTHTGEK 108
++ IRT + C C++ G + H+++ K
Sbjct: 16 MLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 32.2 bits (73), Expect = 0.019
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 97 MRSHIRTHTGEKPY 110
+ +HIR HTGEK
Sbjct: 78 LVNHIRVHTGEKSG 91
Score = 31.9 bits (72), Expect = 0.025
Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 20/75 (26%)
Query: 75 TDPFRHKFVCYACDYFSYNIGCMRSHI-RTHTGEKPYA-------------------HII 114
D + +CD + + +H+ H G + +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 115 RNHYRKHTGRKPFKC 129
NH R HTG K
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 28.4 bits (63), Expect = 0.37
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 121 HTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+ C + F+T H+ H
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 30.7 bits (69), Expect = 0.026
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 74 RTDPFRHKFVCYACDYFSYNIGCMRSHIRTHTGEKPYA 111
+ R + C C ++ + H +H+GEKPY+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 42
Score = 24.5 bits (53), Expect = 3.8
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 115 RNHYRKHTGRKPFKCVVC 132
H H+G KP+
Sbjct: 29 NRHKLSHSGEKPYSSGPS 46
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 30.3 bits (69), Expect = 0.028
Identities = 7/40 (17%), Positives = 10/40 (25%), Gaps = 11/40 (27%)
Query: 100 HIRTHTGEKPYA-----------HIIRNHYRKHTGRKPFK 128
+ GE PY + H R + P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 28.8 bits (65), Expect = 0.10
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 95 GCMRSHIRTHTGEKPYA 111
G + H R+ + P +
Sbjct: 25 GSLAVHQRSCSQSGPSS 41
Score = 28.4 bits (64), Expect = 0.14
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE 153
G P+ C C + F H +R+ Q
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH-QRSCSQS 37
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.0 bits (64), Expect = 0.079
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 82 FVCYACDYFSYNIGCMRSHIRTHTGEK 108
+ C C Y S + H+R HTGEK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage,
structural evolution, transcription; 1.40A {Xylella
fastidiosa}
Length = 79
Score = 29.9 bits (67), Expect = 0.083
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 25 GGFSKLKRALDVNQSMI-------DISADRLERLRTQCATSAELTQHEIR 67
G S L +L V QS I + A+R + + T+ + E+R
Sbjct: 12 GSVSALAASLGVRQSAISNWRARGRVPAERCIDI--ERVTNGAVICRELR 59
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 29.9 bits (67), Expect = 0.18
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 126 PFKCVVCKQFFATYSGAYQHLRRTHG 151
C+ C + FA+ + H + H
Sbjct: 15 HTPCLFCDRLFASAEETFSHCKLEHQ 40
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 29.4 bits (65), Expect = 0.19
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 19/77 (24%)
Query: 81 KFVCYACDYFSYNIGCMRSHIRTHTGEKPYAHIIRNHYRKHTG---RKPFKCVVCKQFFA 137
+ C C + + ++ H+ + +H + CV C
Sbjct: 18 GYECKYCTFQTPDLNMFTFHVDS----------------EHPNVVLNSSYVCVECNFLTK 61
Query: 138 TYSGAYQHLRRTHGQES 154
Y +H + H E
Sbjct: 62 RYDALSEHNLKYHPGEE 78
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 29.5 bits (65), Expect = 0.22
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 114 IRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQESI 155
++ + K C+ C + F + ++H H Q ++
Sbjct: 57 LKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNM 98
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 29.8 bits (66), Expect = 0.36
Identities = 9/58 (15%), Positives = 15/58 (25%), Gaps = 11/58 (18%)
Query: 97 MRSHIRTHTGEKPYAHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQES 154
+ S G P + ++C VC + H +HG
Sbjct: 161 IVSKHPARVGLPP----------TASSGHGYQCHVCSAVLFSPLDLDAH-VASHGLHG 207
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 28.4 bits (62), Expect = 0.59
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 114 IRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHG 151
++ H R C VCK+ F + A H+ + H
Sbjct: 90 LKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHN 125
Score = 28.0 bits (61), Expect = 0.79
Identities = 9/47 (19%), Positives = 14/47 (29%)
Query: 104 HTGEKPYAHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
H + F C +C F++ QH+R T
Sbjct: 52 HNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE 98
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 26.6 bits (58), Expect = 0.64
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 121 HTGRKPFKCVVCKQFFATYSGAYQHLR 147
+G++PF C +C F T + +HL+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.85
Identities = 32/206 (15%), Positives = 57/206 (27%), Gaps = 88/206 (42%)
Query: 3 ALRTVFHQLCRAFYAY---------EKDAQDGG--------------FSKLKRALD-VNQ 38
A+ +F R + AY +D+ + +++ ++ N
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 39 SM-----IDIS---ADR----------LE----RLRTQCATSAELTQHEI----RTIESM 72
+ ++IS + L LR A S L Q I R ++
Sbjct: 359 HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS-GLDQSRIPFSERKLKFS 417
Query: 73 IR----TDPFRHKFVCYACDYFSYNIGCMRSHIRTHTGEKPYAHIIRNHYRKHT---GRK 125
R PF H + P + +I K+ K
Sbjct: 418 NRFLPVASPF-H------SHL-------L----------VPASDLINKDLVKNNVSFNAK 453
Query: 126 PFKCVVCKQFFATYSGAYQHLRRTHG 151
+ V + T+ G+ LR G
Sbjct: 454 DIQIPV----YDTFDGS--DLRVLSG 473
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 26.4 bits (57), Expect = 0.98
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 121 HTGRKPFKCVVCKQFFATYSGAYQHLRRTHG 151
+G KP+ C VC F H+R G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 25.1 bits (54), Expect = 1.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 82 FVCYACDYFSYNIGCMRSHIRTHTGEK 108
+VC C + G ++ H+R HTGEK
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 27.5 bits (60), Expect = 2.1
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 125 KPFKCVVCKQFFATYSGAYQHLRRTHG 151
+ C VC F+T S +HLR H
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDHR 141
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix,
pectolytic, polygalacturonate; 1.54A {Bacillus} PDB:
3vmw_A*
Length = 326
Score = 27.3 bits (60), Expect = 2.5
Identities = 4/41 (9%), Positives = 11/41 (26%)
Query: 87 CDYFSYNIGCMRSHIRTHTGEKPYAHIIRNHYRKHTGRKPF 127
+ ++ + H + N++ R P
Sbjct: 170 NKFENHWKTMLVGHTDNASLAPDKITYHHNYFNNLNSRVPL 210
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 27.2 bits (60), Expect = 2.8
Identities = 6/54 (11%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 41 IDISADRLERLRTQCATSAELTQHEIRTIESMIRTDPFRHKF--VCYACDYFSY 92
+++S L R + A + + ++ + +F V + +
Sbjct: 110 LELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSGSINE 163
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 26.1 bits (56), Expect = 3.1
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 114 IRNHYRK-HTGRKPFKCVVCKQFFATYSGAYQHLRRTHG 151
++ H + KC C++ F + +G H H
Sbjct: 41 LKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 24.6 bits (54), Expect = 3.2
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 98 RSHIRTHTGEK 108
R+H+R HTGE+
Sbjct: 27 RAHLRWHTGER 37
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 24.3 bits (52), Expect = 3.2
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 125 KPFKCVVCKQFFATYSGAYQHLRRTHG 151
KPF C +C Q +S +HL RTHG
Sbjct: 2 KPFSCSLCPQRSRDFSAMTKHL-RTHG 27
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 23.7 bits (52), Expect = 5.1
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 100 HIRTHTGEK 108
H RTHTGEK
Sbjct: 23 HKRTHTGEK 31
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 24.4 bits (52), Expect = 5.2
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 121 HTGRKPFKCVVCKQFFATYSGAYQHLR-RTHGQES 154
K FKC C++ F+ QH R T G +S
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKS 41
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 24.8 bits (53), Expect = 6.6
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 120 KHTGRKPFKCVVCKQFFATYSGAYQHLRRTHG 151
++ ++ F C C + + +G H+ H
Sbjct: 56 ENCKQEMFTCHHCGKQLRSLAGMKYHVMANHN 87
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 23.7 bits (51), Expect = 6.7
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 125 KPFKCVVCKQFFATYSGAYQHLRRTHG 151
K + C +C + F +H ++ H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHS 27
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.7 bits (50), Expect = 6.7
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 82 FVCYACDYFSYNIGCMRSHIRTHTGEK 108
F C C+Y + + +++H+ H+ EK
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTEK 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.137 0.433
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,357,648
Number of extensions: 125077
Number of successful extensions: 1112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 847
Number of HSP's successfully gapped: 362
Length of query: 155
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 69
Effective length of database: 4,300,587
Effective search space: 296740503
Effective search space used: 296740503
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.6 bits)