RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13210
(155 letters)
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 40.0 bits (94), Expect = 3e-06
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 119 RKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE 153
R H+G KP++C +C F H+ + H +
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 32.4 bits (74), Expect = 0.002
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE 153
+ R+ +KC C + F+ S +H RRTH E
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKH-RRTHTGE 38
Score = 27.8 bits (62), Expect = 0.075
Identities = 6/35 (17%), Positives = 8/35 (22%), Gaps = 11/35 (31%)
Query: 100 HIRTHTGEKPYA-----------HIIRNHYRKHTG 123
+ Y + H R HTG
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG 37
Score = 23.6 bits (51), Expect = 3.0
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 82 FVCYACDYFSYNIGCMRSHIRTHTGE 107
+ C C + + H RTHTGE
Sbjct: 13 YKCDECGKSFSHSSDLSKHRRTHTGE 38
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 32.3 bits (74), Expect = 0.002
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 119 RKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHG 151
R HTG KP+ C C + F H +R H
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 33
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 32.4 bits (74), Expect = 0.002
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 117 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
R TG KPF+C C + F+ H R+ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALH-RKRH 34
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 31.8 bits (73), Expect = 0.003
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 121 HTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE 153
H+G KP+ CV C + F+ S QH +R H E
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQH-QRVHTGE 33
Score = 25.3 bits (56), Expect = 0.63
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 82 FVCYACDYFSYNIGCMRSHIRTHTGE 107
+ C C + H R HTGE
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVHTGE 33
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 30.7 bits (70), Expect = 0.007
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 122 TGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE 153
+ KP+ C C + F+ H+++ H E
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSE 32
Score = 29.2 bits (66), Expect = 0.023
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 82 FVCYACDY-FSYNIGCMRSHIRTHTGEKPY 110
++C +C FS + HT E+P+
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPH 35
Score = 27.3 bits (61), Expect = 0.11
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 12/39 (30%)
Query: 105 TGEKPY------------AHIIRNHYRKHTGRKPFKCVV 131
+ KPY H+ + + HT +P KC V
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 28.5 bits (64), Expect = 0.036
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 84 CYACDYFSYNIGCMRSHIRTHTGEKPY 110
AC ++ H++ H+ + Y
Sbjct: 6 EPACGKSFNFKKHLKEHMKLHSDTRDY 32
Score = 27.4 bits (61), Expect = 0.12
Identities = 3/15 (20%), Positives = 8/15 (53%)
Query: 115 RNHYRKHTGRKPFKC 129
+ H + H+ + + C
Sbjct: 20 KEHMKLHSDTRDYIC 34
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 27.7 bits (62), Expect = 0.068
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 82 FVCYACDYFSYNIGCMRSHIRTHTGEK 108
F C C + HI+TH +K
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 23.8 bits (52), Expect = 1.9
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 125 KPFKCVVCKQFFATYSGAYQHLRRTHGQE 153
K F C C + F +H +TH +
Sbjct: 1 KKFACPECPKRFMRSDHLSKH-IKTHQNK 28
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 28.0 bits (62), Expect = 0.078
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 116 NHYRKHTGRKPFKCVVCK--QFFATYSGAYQHLRRTHGQE 153
+ Y K K F+C+ + F H +TH ++
Sbjct: 8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSH-IQTHLED 46
Score = 27.2 bits (60), Expect = 0.19
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 80 HKFVCYACDYFSYNIGCMRSHIRTHTGEK 108
+ + C +RSHI+TH ++
Sbjct: 19 FECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 25.7 bits (56), Expect = 0.53
Identities = 6/44 (13%), Positives = 15/44 (34%), Gaps = 14/44 (31%)
Query: 95 GCMRSHIRTHTGEKPYAH-------------IIRNHYRKHTGRK 125
G + +++ +K + IR+H + H +
Sbjct: 5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 25.7 bits (57), Expect = 0.38
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 82 FVCYACDYFSYNIGCMRSHIRTHTGEK 108
FVC C ++ H R+HT EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 23.7 bits (52), Expect = 1.8
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 125 KPFKCVVCKQFFATYSGAYQHLRRTH 150
+ F C VC + FA +H R+H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH-YRSH 25
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 25.9 bits (57), Expect = 0.40
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 121 HTGRKPFKCVVCKQFFATYSGAYQHLRRTH 150
+G++PF C +C F T + +H + H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARH-LKVH 30
Score = 22.8 bits (49), Expect = 4.6
Identities = 5/31 (16%), Positives = 10/31 (32%), Gaps = 11/31 (35%)
Query: 104 HTGEKPYAH-----------IIRNHYRKHTG 123
+G++P+ H + HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 23.8 bits (51), Expect = 1.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 82 FVCYACDYFSYNIGCMRSHIRTHTGE 107
F C C Y S N + H+R+HTG+
Sbjct: 4 FKCQICPYASRNSSQLTVHLRSHTGD 29
>d1vbga3 d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N-terminal
domain {Maize (Zea mays) [TaxId: 4577]}
Length = 380
Score = 26.5 bits (57), Expect = 1.8
Identities = 12/146 (8%), Positives = 32/146 (21%), Gaps = 5/146 (3%)
Query: 12 CRAFYAYEKDAQDGGFSKLKRALDVNQSMIDISADRLERLRTQCATSAELTQHEIRTIES 71
C+ + G ++++ L + + + +R S
Sbjct: 50 CQQYQDAGCALPAGLWAEIVDGLQWVEEYMGATLGDPQRPLLLSVRSGAAVSMPGMMDTV 109
Query: 72 MIR--TDPFRHKFVCYACDYF---SYNIGCMRSHIRTHTGEKPYAHIIRNHYRKHTGRKP 126
+ D + + F S+ + H ++ G K
Sbjct: 110 LNLGLNDEVAAGLAAKSGERFAYDSFRRFLDMFGNVVMDIPRSLFEEKLEHMKESKGLKN 169
Query: 127 FKCVVCKQFFATYSGAYQHLRRTHGQ 152
+ + G+
Sbjct: 170 DTDLTASDLKELVGQYKEVYLSAKGE 195
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 23.7 bits (51), Expect = 1.9
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 81 KFVCYACDYFSYNIGCMRSHIRTHTGEK 108
K++C C + ++ HIRTHT +
Sbjct: 1 KYICEECGIRAKKPSMLKKHIRTHTDVR 28
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 23.7 bits (52), Expect = 2.0
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 125 KPFKCVVCKQFFATYSGAYQHLRRTH 150
KPF+C +C + F+ H RTH
Sbjct: 2 KPFQCRICMRNFSRSDHLTTH-IRTH 26
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 23.8 bits (52), Expect = 2.0
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 100 HIRTHTGEK 108
H RTHTGEK
Sbjct: 23 HKRTHTGEK 31
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 26.3 bits (57), Expect = 2.1
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 40 MIDISADRL---ERLRTQCATSAELTQHEIRTIESMIRTDP 77
MID+ +L E L+ +L Q + TI+ R DP
Sbjct: 1 MIDLDFRKLTIEECLKLSEEEREKLPQLSLETIK---RLDP 38
>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal
domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Length = 340
Score = 25.7 bits (55), Expect = 3.2
Identities = 8/103 (7%), Positives = 20/103 (19%), Gaps = 4/103 (3%)
Query: 55 CATSAELTQHEIRTIESMIRTDPFRHKFVCYACDYFSYNIGCMRSH---IRTHTGEKPYA 111
+ E+ +I ++ R + + Y + + Y
Sbjct: 133 LSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYG 192
Query: 112 -HIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE 153
+ + K V + E
Sbjct: 193 GSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIE 235
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 33
Score = 23.1 bits (50), Expect = 3.6
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 97 MRSHIRTHTGE 107
+ H+R HTGE
Sbjct: 23 LVVHMRRHTGE 33
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 22.2 bits (48), Expect = 6.2
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 125 KPFKCVVCKQFFATYSGAYQHLRRTH 150
KP+KC+ C + F+ SG H +R H
Sbjct: 1 KPYKCLECGKAFSQNSGLINH-QRIH 25
>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 84
Score = 23.5 bits (50), Expect = 7.8
Identities = 6/41 (14%), Positives = 12/41 (29%)
Query: 101 IRTHTGEKPYAHIIRNHYRKHTGRKPFKCVVCKQFFATYSG 141
I E + + + + KC VC + +
Sbjct: 13 IGKDIIEDADGIAMPHQWLEGNLPVSAKCTVCDKTCGSVLR 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.329 0.137 0.433
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 580,408
Number of extensions: 25089
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 61
Length of query: 155
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,336,656
Effective search space: 102922512
Effective search space used: 102922512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (22.7 bits)