RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13211
(89 letters)
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 42.6 bits (101), Expect = 4e-07
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 23 RNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ H + H G K C T++ +H+ H
Sbjct: 50 KRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 28.0 bits (63), Expect = 0.16
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 25 HYRKHTGRKPFKC--VVCKQFFATYSGAYQHLRRTH 58
H HT + P++C C + F+ S +H + H
Sbjct: 22 HQFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVH 56
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 38.2 bits (90), Expect = 1e-05
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 20 HIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
H+ R HYR HT KP+ C +C + F +H ++ H
Sbjct: 17 HLKR-HYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 37.2 bits (87), Expect = 2e-05
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ TG+KP++C+ C + F + +H R H
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 23.7 bits (52), Expect = 4.2
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 20 HIIRNHYRKHTGRKPFKC 37
+IR+ HTG KP
Sbjct: 27 SLIRHWRYYHTGEKPSGP 44
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 37.9 bits (89), Expect = 2e-05
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 23 RNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQESCSS 65
R H R H +PFKC C S +H+++ HG S S
Sbjct: 26 RIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
Score = 32.1 bits (74), Expect = 0.003
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 27 RKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ P KC C ++ + H R H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIH-ERIH 32
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 39.1 bits (92), Expect = 3e-05
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 23 RNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ H + H G K C T++ +H+ H
Sbjct: 153 KRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 188
Score = 31.4 bits (72), Expect = 0.018
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 25 HYRKHTGRKPFKC--VVCKQFFATYSGAYQHLRRTHG 59
H HTG K F C C F T + +H R H
Sbjct: 63 HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHN 99
Score = 30.3 bits (69), Expect = 0.044
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 25 HYRKHTGRKPFKC--VVCKQFFATYSGAYQHLRRTH 58
H KHTG KPF C C++ F + +H TH
Sbjct: 33 HLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH-SLTH 67
Score = 29.1 bits (66), Expect = 0.11
Identities = 6/37 (16%), Positives = 8/37 (21%), Gaps = 3/37 (8%)
Query: 24 NHYRKHTGRKPFKCVV--CKQFFATYSGAYQHLRRTH 58
K + C C + HL H
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHL-CKH 37
Score = 29.1 bits (66), Expect = 0.12
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 23 RNHYRKHTGRKPFKC--VVCKQFFATYSGAYQHLRRTH 58
+ H HT + P++C C + F+ S +H + H
Sbjct: 123 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVH 159
Score = 25.2 bits (56), Expect = 3.0
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 23 RNHYRKHTGRK--PFKCVV--CKQFFATYSGAYQHLRRTH 58
+ H+ + K + C C + F ++ H + +H
Sbjct: 91 KKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH-QFSH 129
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 36.4 bits (85), Expect = 5e-05
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ +G KPFKC C + F T S Y H +R+H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSH-QRSH 35
Score = 25.2 bits (56), Expect = 0.96
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 23 RNHYRKHTGRKPFKC 37
+H R H+G KP
Sbjct: 29 YSHQRSHSGEKPSGP 43
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 34.8 bits (81), Expect = 2e-04
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG++P++C+ C + F T S H RR+H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICH-RRSH 35
Score = 26.3 bits (59), Expect = 0.31
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 25 HYRKHTGRKPFKC 37
H R HTG KP
Sbjct: 31 HRRSHTGEKPSGP 43
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 34.8 bits (81), Expect = 2e-04
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ G + +C C +FF S QH RR H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH-RRIH 35
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 3e-04
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE---SCSS 65
+ TG PF C C + F + H ++ H E SS
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIH-QKIHTGERPSGPSS 45
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 35.9 bits (84), Expect = 3e-04
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 23 RNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
R H HTG P+KC C Q F H+ + H
Sbjct: 83 RLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 31.3 bits (72), Expect = 0.017
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 23 RNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRT 57
+ H RKHTG KPF+C C + + +H R
Sbjct: 24 KVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARN 58
Score = 28.6 bits (65), Expect = 0.13
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 29 HTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ + F C VC++ F H +H
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLH-MVSH 89
Score = 27.9 bits (63), Expect = 0.24
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 29 HTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+G +C C + F + H R H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVH-NRKH 30
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 3e-04
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ + KP+KC C + + H +R H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMH-QRVH 35
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 3e-04
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ TG KPFKC +C + F S +H H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRH-SMVH 35
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 34.8 bits (81), Expect = 4e-04
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRR 56
HYRKHTG +PF+C C + F+ H++R
Sbjct: 56 HYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 27.5 bits (62), Expect = 0.24
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 23 RNHYRKHTGRKPFKCVV--CKQFFATYSGAYQHLRRTH 58
+ H R HTG KP+ C C FA +H R H
Sbjct: 24 KAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH-YRKH 60
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 5e-04
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG KPF C+ C + F+ + G QH RR H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQH-RRIH 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 6e-04
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ +G KPFKC C + F S + H +R H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSH-QRVH 35
Score = 25.2 bits (56), Expect = 0.91
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 23 RNHYRKHTGRKPFKC 37
+H R HTG KP
Sbjct: 29 HSHQRVHTGEKPSGP 43
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 6e-04
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
G K +KC VC + F+ S H +R H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH-QRVH 35
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 6e-04
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ TG KP+KC+ C + F S QH +R H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQH-QRLH 35
Score = 25.2 bits (56), Expect = 1.0
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 25 HYRKHTGRKPFKC 37
H R HTG++P
Sbjct: 31 HQRLHTGQRPSGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 33.6 bits (78), Expect = 6e-04
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ TG KPFKCV C + F+ S H + H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH-HKLH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 33.7 bits (78), Expect = 6e-04
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ TG KP+KC C + F Y H H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTH-HMVH 35
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 34.0 bits (79), Expect = 6e-04
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 23 RNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHG 59
+ R H+G KP++C +C F H+ + H
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHT 40
Score = 34.0 bits (79), Expect = 8e-04
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 23 RNHYRKHTG--RKPFKCVVCKQFFATYSGAYQHLRRTHGQE 61
+ H + F C C A S HLR+ H
Sbjct: 32 KMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS 72
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 34.0 bits (79), Expect = 6e-04
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ R+ +KC C + F+ S +H RRTH
Sbjct: 9 SEWQQRERRRYKCDECGKSFSHSSDLSKH-RRTH 41
Score = 31.3 bits (72), Expect = 0.008
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
H R HTG KP+KC C + F S H R H
Sbjct: 37 HRRTHTGEKPYKCDECGKAFIQRSHLIGH-HRVH 69
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 7e-04
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ TG KP+KC C + F S +H +R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRH-QRIH 35
Score = 25.2 bits (56), Expect = 0.93
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 25 HYRKHTGRKPFKC 37
H R HTG KP
Sbjct: 31 HQRIHTGEKPSGP 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 7e-04
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ TG KP+KC C + F SG + H +++H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH-QQSH 35
Score = 25.5 bits (57), Expect = 0.82
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 23 RNHYRKHTGRKPFKC 37
H + HTG +
Sbjct: 29 HIHQQSHTGERHSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.2 bits (77), Expect = 7e-04
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG +P+ C VC + F S +H ++ H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKH-QKIH 35
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 8e-04
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ G KP+ C C + F++ S H RTH
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIH-MRTH 35
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 34.0 bits (79), Expect = 8e-04
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 23 RNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
H R HTG KPF C +C + FA +H R
Sbjct: 20 TTHIRTHTGEKPFACDICGRKFARSDERKRH-RDIQ 54
Score = 25.1 bits (56), Expect = 1.7
Identities = 2/38 (5%), Positives = 8/38 (21%), Gaps = 3/38 (7%)
Query: 23 RNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLR--RTH 58
+ H P ++ + + +
Sbjct: 48 KRHRDIQHI-LPILEDKVEELLSKNYHLENEVARLKKL 84
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.2 bits (77), Expect = 9e-04
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE---SCSS 65
+ TG KPF+C C++ F T S H +RTH E SS
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVH-QRTHTGEKPSGPSS 45
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 34.0 bits (79), Expect = 9e-04
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 25 HYRKHTG--RKPFKCVVCKQFFATYSGAYQHLRRTH 58
H R H G KP+ C C + F+ H+++ H
Sbjct: 54 HVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 32.8 bits (76), Expect = 0.003
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
H H+G KP+ C VC F H R+H
Sbjct: 26 HKLSHSGEKPYSCPVCGLRFKRKDRMSYH-VRSH 58
Score = 28.2 bits (64), Expect = 0.13
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 29 HTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+G C +C + F +H + +H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRH-KLSH 30
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 34.1 bits (79), Expect = 9e-04
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRR 56
HYRKHTG KPF+C VC + F+ H++R
Sbjct: 66 HYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 28.0 bits (63), Expect = 0.20
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 23 RNHYRKHTGRKPFKCVV--CKQFFATYSGAYQHLRRTH 58
+ H R HTG KP+KC C FA +H R H
Sbjct: 34 KAHLRTHTGEKPYKCTWEGCDWRFARSDELTRH-YRKH 70
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.001
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG KP+KC VC + F S H +R H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH-QRIH 35
Score = 25.6 bits (57), Expect = 0.74
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 25 HYRKHTGRKPFKC 37
H R HTG KP
Sbjct: 31 HQRIHTGEKPSGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.001
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+G KP+ C C + F+ S H +RTH
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAH-QRTH 35
Score = 26.0 bits (58), Expect = 0.54
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 25 HYRKHTGRKPFKC 37
H R HTG KP
Sbjct: 31 HQRTHTGEKPSGP 43
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 34.0 bits (79), Expect = 0.001
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
H R HTG KPF C +C + FA +H + H
Sbjct: 53 HIRTHTGEKPFACDICGRKFARSDERKRH-TKIH 85
Score = 32.4 bits (75), Expect = 0.003
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
H R HTG+KPF+C +C + F+ H RTH
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTH 57
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 32.8 bits (76), Expect = 0.001
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG KP++C C++ F T S H +RTH
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVH-QRTH 35
Score = 25.5 bits (57), Expect = 0.69
Identities = 5/13 (38%), Positives = 5/13 (38%)
Query: 25 HYRKHTGRKPFKC 37
H R HTG
Sbjct: 31 HQRTHTGESGPSS 43
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 33.9 bits (79), Expect = 0.001
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
H R H+ +PFKC +C S H R+H
Sbjct: 55 HLRIHSDERPFKCQICPYASRNSSQLTVH-LRSH 87
Score = 33.9 bits (79), Expect = 0.001
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
H R HTG KP+KC C A S +H R H
Sbjct: 27 HMRCHTGVKPYKCKTCDYAAADSSSLNKH-LRIH 59
Score = 28.9 bits (66), Expect = 0.094
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 29 HTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
P KC VC + F+ H R H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTH-MRCH 31
Score = 26.6 bits (60), Expect = 0.54
Identities = 5/13 (38%), Positives = 5/13 (38%)
Query: 25 HYRKHTGRKPFKC 37
H R HTG
Sbjct: 83 HLRSHTGDSGPSS 95
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.001
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ TG KP+KC C + F S H ++ H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIH-QKCH 35
Score = 26.7 bits (60), Expect = 0.25
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 23 RNHYRKHTGRKPFKC 37
R H + HTG +
Sbjct: 29 RIHQKCHTGERHSGP 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 32.9 bits (76), Expect = 0.001
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ TG KP+ C C + F+ S H +R+H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH-QRSH 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.001
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
G+K FKC CK+ F S H +R H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH-QRIH 35
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.001
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE---SCSS 65
TG KP++C C + F S + H ++ H E SS
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTH-QKIHTGEKPSGPSS 45
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 34.7 bits (81), Expect = 0.001
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 23 RNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
H R HTG KP+KC C + F+ + H +RTH
Sbjct: 66 TRHQRTHTGEKPYKCPECGKSFSQRANLRAH-QRTH 100
Score = 34.7 bits (81), Expect = 0.001
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 23 RNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
R H R HTG KP+KC C + F+ + H +RTH
Sbjct: 122 RAHQRTHTGEKPYKCPECGKSFSREDNLHTH-QRTH 156
Score = 34.3 bits (80), Expect = 0.001
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 23 RNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
R H R HTG KP+ C C + F+ + H +RTH
Sbjct: 94 RAHQRTHTGEKPYACPECGKSFSQLAHLRAH-QRTH 128
Score = 34.3 bits (80), Expect = 0.002
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 23 RNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
H R HTG KP+KC C + F+ +H +RTH
Sbjct: 38 AEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-QRTH 72
Score = 34.0 bits (79), Expect = 0.002
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 23 RNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
H R HTG KP+KC C + F+ H +RTH
Sbjct: 150 HTHQRTHTGEKPYKCPECGKSFSRRDALNVH-QRTH 184
Score = 33.2 bits (77), Expect = 0.004
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 23 RNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
G KP+ C C + F+ +H +RTH
Sbjct: 10 VAQAALEPGEKPYACPECGKSFSRSDHLAEH-QRTH 44
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.001
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE---SCSS 65
G KP++C C + F+ QH TH +E SS
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQH-WITHTREKPSGPSS 45
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 33.2 bits (77), Expect = 0.001
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
H R HTG KP+KC+ C + F+ SG H +R H
Sbjct: 33 HQRVHTGEKPYKCLECGKAFSQNSGLINH-QRIH 65
Score = 32.1 bits (74), Expect = 0.004
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
H+G KP+ CV C + F+ S QH +R H
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQH-QRVH 37
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.001
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ TG K + C C + F+ +H R H
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKH-ERLH 35
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 32.9 bits (76), Expect = 0.001
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ + KP+ C C + F+ H+++ H
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 28.3 bits (64), Expect = 0.065
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 20 HIIRNHYRKHTGRKPFKCVVCKQFFAT 46
H+ + + HT +P KC V ++
Sbjct: 27 HLNGHIKQVHTSERPHKCQVWVSGPSS 53
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 34.0 bits (79), Expect = 0.001
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 23 RNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ H R+HTG KPF+C C++ F+ H RTH
Sbjct: 55 KRHQRRHTGVKPFQCKTCQRKFSRSDHLKTH-TRTH 89
Score = 30.2 bits (69), Expect = 0.033
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 23 RNHYRKHTGRKPFKCVV--CKQFFATYSGAYQHLRRTH 58
+ H RKHTG KP++C C++ F+ +H +R H
Sbjct: 25 QMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH-QRRH 61
Score = 29.8 bits (68), Expect = 0.048
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 23 RNHYRKHTGRKPFKC--VVCKQFFATYSGAYQHLRRTH 58
+ H R HTG KPF C C++ FA +H H
Sbjct: 83 KTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH-HNMH 119
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 32.6 bits (75), Expect = 0.001
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE 61
TG KPF+C C F+ ++HL R+H +
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHL-RSHERT 38
Score = 24.5 bits (54), Expect = 2.1
Identities = 4/15 (26%), Positives = 4/15 (26%)
Query: 23 RNHYRKHTGRKPFKC 37
H R H P
Sbjct: 29 FKHLRSHERTDPSGP 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.001
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG KP++C VC++ F+ ++ QH +R H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQH-QRVH 35
Score = 25.9 bits (58), Expect = 0.49
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HYRKHTGRKPFKC 37
H R H+G KP
Sbjct: 31 HQRVHSGEKPSGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.001
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ TG KP+ C C + F S +H ++ H
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKH-QKIH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.001
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG P++C C + F+ H +RTH
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISH-QRTH 35
Score = 25.5 bits (57), Expect = 0.80
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 25 HYRKHTGRKPFKC 37
H R H G KP
Sbjct: 31 HQRTHAGEKPSGP 43
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.002
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ +G KP+KCV C + + H +R H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFH-QRVH 35
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 33.3 bits (77), Expect = 0.002
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 23 RNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHG 59
+ R HTG KP+ C C + F H +R H
Sbjct: 4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 40
Score = 27.1 bits (61), Expect = 0.35
Identities = 2/18 (11%), Positives = 3/18 (16%)
Query: 23 RNHYRKHTGRKPFKCVVC 40
H G +
Sbjct: 64 ARHADNCAGPDGVEGENS 81
Score = 26.7 bits (60), Expect = 0.42
Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 5/38 (13%)
Query: 25 HYRKHTG----RKPFKCVVCKQFFATYSGAYQHLRRTH 58
H++++ F C C + F + +H
Sbjct: 34 HFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH-ADNC 70
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.002
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ TG KP+ C C + F+ YS H + H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH-QVIH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.002
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG KP+KC C + F S H + TH
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIH-QATH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.002
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG KP+KC C + + + H ++ H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMH-QKVH 35
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.002
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+G KPF+C C + F S + H +R H
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSH-QRVH 35
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.002
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG KP++C VC + F + QH ++TH
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQH-QKTH 35
Score = 24.8 bits (55), Expect = 1.6
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HYRKHTGRKPFKC 37
H + HTG KP
Sbjct: 31 HQKTHTGEKPSGP 43
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 32.8 bits (75), Expect = 0.002
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 23 RNHYRKHT---GRKPFKCVVCKQFFATYSGAYQHLRRTHGQESCSSLKALRKLRG 74
H RKH F C C + F H ++H + ++ G
Sbjct: 24 NWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSSG 78
Score = 27.4 bits (61), Expect = 0.28
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 29 HTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+G +C +C + H +R H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWH-QRKH 30
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.002
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG KP+ C C + F S +H RR H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRH-RRIH 35
Score = 25.6 bits (57), Expect = 0.83
Identities = 9/18 (50%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 20 HIIRNHYRKHTGRKPFKC 37
H+ R H R HTG KP
Sbjct: 27 HLNR-HRRIHTGEKPSGP 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.002
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE 61
+ TG KP+ C VC + F + QH R H QE
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQH-LRVHTQE 38
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.002
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ +G KP+KC C + F S H R H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNH-WRIH 35
Score = 25.5 bits (57), Expect = 0.70
Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 20 HIIRNHYRKHTGRKPFKC 37
H+ H+R HTG KP
Sbjct: 27 HLTN-HWRIHTGEKPSGP 43
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 32.8 bits (76), Expect = 0.002
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 23 RNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+H KP+KC C+ F H + H
Sbjct: 6 HHHSHMTHSDKPYKCDRCQASFRYKGNLASH-KTVH 40
Score = 32.4 bits (75), Expect = 0.003
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 23 RNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+H HTG KP++C +C F + H R H
Sbjct: 34 ASHKTVHTGEKPYRCNICGAQFNRPANLKTH-TRIH 68
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 32.7 bits (75), Expect = 0.002
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRR 56
H R HTG+KPF+C +C + F+ H+R
Sbjct: 40 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.002
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG KP++C VC + F+ H +R H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVH-QRIH 35
Score = 25.9 bits (58), Expect = 0.43
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 25 HYRKHTGRKPFKC 37
H R H+G+KP
Sbjct: 31 HQRIHSGKKPSGP 43
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 31.9 bits (73), Expect = 0.002
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRR 56
R TG KPF+C C + F+ H +R
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 32.1 bits (74), Expect = 0.002
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG K +KC C + F+ S QH ++ H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQH-QKIH 35
Score = 25.6 bits (57), Expect = 0.81
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HYRKHTGRKPFKC 37
H + HTG KP
Sbjct: 31 HQKIHTGEKPSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 32.1 bits (74), Expect = 0.002
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ TG+KPF+C C + F H +R H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTH-QRIH 35
Score = 25.2 bits (56), Expect = 0.93
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 25 HYRKHTGRKPFKC 37
H R HTG K
Sbjct: 31 HQRIHTGEKSGPS 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.002
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ TG K F+C C + F S H ++ H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMH-QKIH 35
Score = 25.2 bits (56), Expect = 0.90
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HYRKHTGRKPFKC 37
H + HTG KP
Sbjct: 31 HQKIHTGEKPSGP 43
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.002
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG KP+KC C + F +S H + H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTH-QVIH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.002
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG KP+KC VC + F S QH H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQH-HSVH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.002
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ TG KP+KC C + F+ S +H +R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARH-QRIH 35
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.003
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG KP++C +C + F S + H ++ H
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVH-QQIH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.003
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ TG KP++C C + FA + QH +R H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQH-QRIH 35
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.003
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ TG KP+KC C + F S +H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRH-RGIH 35
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 31.7 bits (73), Expect = 0.003
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE---SCSS 65
+ + K +C C + F S QH +R H E SS
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH-QRIHTGEKPSGPSS 45
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 33.7 bits (78), Expect = 0.003
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 23 RNHYRKHTGRKPFKC--VVCKQFFATYSGAYQHLRRTH 58
+ H R HTG KP+ C C + F+ S +H RTH
Sbjct: 86 KTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 31.4 bits (72), Expect = 0.018
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 23 RNHYRKHTGRKPFKCVV--CKQFFATYSGAYQHLRRTH 58
H R+HTG KP KC C++ ++ HL R+H
Sbjct: 56 VVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHL-RSH 92
Score = 25.2 bits (56), Expect = 2.3
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 20 HIIRNHYRKHTGRKPFKCVV--CKQFFATYSGAYQHLRRTH 58
++ R H+ KP+ C + C + + S +H+ +T
Sbjct: 114 DRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV-KTV 153
Score = 25.2 bits (56), Expect = 2.5
Identities = 12/44 (27%), Positives = 13/44 (29%), Gaps = 14/44 (31%)
Query: 24 NHYRKHTGRKPFKCVVC------KQFFATYSGAYQHLR---RTH 58
N H RK F C + F A Y L R H
Sbjct: 24 NSEHIHGERKEFVCHWGGCSRELRPFKAQY-----MLVVHMRRH 62
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.003
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ TG +P KC C + F + QH +R H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQH-QRIH 35
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 31.8 bits (73), Expect = 0.003
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE---SCSS 65
TG KP KC C + F S H +RTH + SS
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMH-QRTHVDDKHSGPSS 45
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 31.8 bits (73), Expect = 0.003
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
G KP++C C + F+ H R H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVH-IRVH 34
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.003
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG + ++C C + FA S H +R H
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMH-QRIH 35
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 31.8 bits (72), Expect = 0.003
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQESCSS 65
+ G PFKC C + F + QH RTH ++S S
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQH-ERTHARKSGPS 42
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 31.7 bits (73), Expect = 0.003
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ +G KP++C C + F S H RTH
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVH-ERTH 35
Score = 23.3 bits (51), Expect = 4.7
Identities = 4/13 (30%), Positives = 4/13 (30%)
Query: 25 HYRKHTGRKPFKC 37
H R H G
Sbjct: 31 HERTHAGVSGPSS 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.003
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG KP+ C C + F S +H +R H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEH-QRIH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.003
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG KP+KC C + F S H +R H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANH-QRIH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.003
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG KP+KC C + F S +H RR H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH-RRVH 35
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.003
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE---SCSS 65
+G +P+ C C + F +S +H + H +E SS
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEH-LKRHFREKSSGPSS 45
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 31.7 bits (73), Expect = 0.003
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ TG KP+ C C + F + S H RTH
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIH-TRTH 35
Score = 25.1 bits (56), Expect = 0.86
Identities = 5/13 (38%), Positives = 5/13 (38%)
Query: 25 HYRKHTGRKPFKC 37
H R HTG
Sbjct: 31 HTRTHTGESGPSS 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.004
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG KP++C C + F S + H +R H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH-QRIH 35
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.004
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+G +PFKC C + F S H R H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGH-LRLH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 31.4 bits (72), Expect = 0.005
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG KP+ C C + F S +H +R H
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKH-QRVH 35
Score = 25.6 bits (57), Expect = 0.67
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HYRKHTGRKPFKC 37
H R H+G KP
Sbjct: 31 HQRVHSGEKPSGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.005
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+G KPFKC C + F H R H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASH-LRIH 35
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.005
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG KP+KC C + F S +H R H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH-RGIH 35
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.005
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+G KP+KC C + F ++ +H RR H
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEH-RRIH 35
Score = 24.8 bits (55), Expect = 1.4
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HYRKHTGRKPFKC 37
H R HTG +P
Sbjct: 31 HRRIHTGYRPSGP 43
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 31.0 bits (71), Expect = 0.005
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
G KP+KC C F + H H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAH-VLIH 34
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.005
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG KP++C C + F+ S H + H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTH-QAIH 35
Score = 25.2 bits (56), Expect = 1.0
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HYRKHTGRKPFKC 37
H HTG+KP
Sbjct: 31 HQAIHTGKKPSGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.006
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG KPFKC C + + QH +R H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQH-QRVH 35
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.006
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG KP++C C + F+ S +H +R H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARH-QRVH 35
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 32.0 bits (74), Expect = 0.006
Identities = 9/35 (25%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+K F C C + F H RTH
Sbjct: 7 GGRLPSKTKKEFICKFCGRHFTKSYNLLIH-ERTH 40
Score = 32.0 bits (74), Expect = 0.007
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
H R HT +P+ C +C + F H R H
Sbjct: 36 HERTHTDERPYTCDICHKAFRRQDHLRDH-RYIH 68
Score = 31.3 bits (72), Expect = 0.011
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 23 RNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE 61
R+H H+ KPFKC C + F H + H Q
Sbjct: 62 RDHRYIHSKEKPFKCQECGKGFCQSRTLAVH-KTLHMQT 99
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.006
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+G+KP++C C++ F QH +R H
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQH-KRVH 35
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.006
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+G KP+ C C + F + +H +R H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRH-QRIH 35
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 30.9 bits (71), Expect = 0.006
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG KPF+C C + F+ S H +R H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATH-QRIH 35
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 32.0 bits (74), Expect = 0.006
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
H H G +P+ C VC + F H + H
Sbjct: 28 HMSMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIH 60
Score = 28.9 bits (66), Expect = 0.083
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQH 53
H + HTG KP++C +C + F ++H
Sbjct: 56 HMKIHTGIKPYECNICAKRFMWRDSFHRH 84
Score = 27.8 bits (63), Expect = 0.29
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSG 49
H + K ++ +Q SG
Sbjct: 82 HRHVTSCTKSYEAAKAEQNTTEASG 106
Score = 24.7 bits (55), Expect = 3.0
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 27 RKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+G K + C C + F S +H H
Sbjct: 3 SGSSGDKLYPC-QCGKSFTHKSQRDRH-MSMH 32
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.006
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG KP +C C + F+ S H +R H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVH-QRIH 35
Score = 25.6 bits (57), Expect = 0.62
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 25 HYRKHTGRKPFKC 37
H R HTG P
Sbjct: 31 HQRIHTGENPSGP 43
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.007
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG+KP+KC C + F S +H R H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARH-RGIH 35
Score = 25.5 bits (57), Expect = 0.76
Identities = 8/18 (44%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 20 HIIRNHYRKHTGRKPFKC 37
H+ R H HTG KP
Sbjct: 27 HLAR-HRGIHTGEKPSGP 43
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 30.5 bits (70), Expect = 0.007
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
G KP+ C +C F HL R H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL-RIH 34
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 30.8 bits (70), Expect = 0.007
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 29 HTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQESCSS 65
+G KP+ C CK+ F+ + QH ++ H +S S
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQH-QKMHTVKSGPS 40
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.007
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG + ++C C + F S H +R H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH-QRIH 35
Score = 25.2 bits (56), Expect = 1.1
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 25 HYRKHTGRKPFKC 37
H R H G KP
Sbjct: 31 HQRIHRGEKPSGP 43
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.5 bits (70), Expect = 0.007
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG KP+KC C + F S +H + H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARH-QLIH 35
Score = 24.7 bits (55), Expect = 1.3
Identities = 8/18 (44%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 20 HIIRNHYRKHTGRKPFKC 37
H+ R H HTG KP
Sbjct: 27 HLAR-HQLIHTGEKPSGP 43
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 30.6 bits (70), Expect = 0.007
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
G K +KC C F+ S H + H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH-QNVH 35
Score = 26.0 bits (58), Expect = 0.51
Identities = 6/15 (40%), Positives = 6/15 (40%)
Query: 23 RNHYRKHTGRKPFKC 37
R H H G KP
Sbjct: 29 RLHQNVHVGEKPSGP 43
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.6 bits (70), Expect = 0.008
Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQESCS 64
+G K C C + F S H +R H E CS
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH-QRVHMGEKCS 41
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 31.7 bits (71), Expect = 0.010
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRT-HGQESCSSLKALRKLRGPKPKPDSTR 83
+ TG F+C C + T H+ T H ++ R KP+ S
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLL 69
Query: 84 SLRKKK 89
+ K+
Sbjct: 70 EMEGKE 75
Score = 27.0 bits (59), Expect = 0.57
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQES 62
K +K KC+ C F + H+ +T +
Sbjct: 71 MEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQK 108
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 30.2 bits (69), Expect = 0.010
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQESCSS 65
T K + C C + F +H ++ H ++S S
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRH-QKIHTRKSGPS 42
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo
sapiens}
Length = 155
Score = 31.9 bits (73), Expect = 0.010
Identities = 5/37 (13%), Positives = 10/37 (27%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQ 60
+ + C + F+T H+ H
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVG 51
Score = 30.3 bits (69), Expect = 0.036
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 24 NHYRKHTGRKPFKCVV--CKQFFATYSGAYQHLRRTH 58
NH R HTG KPF C C + FA H +RTH
Sbjct: 80 NHIRVHTGEKPFPCPFPGCGKIFARSENLKIH-KRTH 115
Score = 29.2 bits (66), Expect = 0.091
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 25 HYRKHTGRKPFKCVV--CKQFFATYSGAYQHLRRTH 58
H R HTG KPFKC C + FA S +H H
Sbjct: 111 HKRTHTGEKPFKCEFEGCDRRFANSSDRKKH-MHVH 145
Score = 24.6 bits (54), Expect = 4.6
Identities = 4/13 (30%), Positives = 4/13 (30%)
Query: 25 HYRKHTGRKPFKC 37
H HT K
Sbjct: 141 HMHVHTSDKSGPS 153
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 30.2 bits (69), Expect = 0.011
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 29 HTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE---SCSS 65
+G KPF C C++ F++ S H ++TH +E SS
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVH-QQTHAEEKPSGPSS 43
Score = 26.3 bits (59), Expect = 0.33
Identities = 4/13 (30%), Positives = 5/13 (38%)
Query: 25 HYRKHTGRKPFKC 37
H + H KP
Sbjct: 29 HQQTHAEEKPSGP 41
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 30.2 bits (69), Expect = 0.011
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
G P+KC C++ F+ H +R H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH-QRMH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 30.2 bits (69), Expect = 0.011
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG KP++C C + F+ + QH +R H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQH-QRVH 35
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 30.9 bits (71), Expect = 0.012
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
H HTG KP KC VC + F+ S H R H
Sbjct: 48 HTFIHTGEKPHKCQVCGKAFSQSSNLITH-SRKH 80
Score = 30.9 bits (71), Expect = 0.012
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
H H+ +P+ C C + F S +H H
Sbjct: 20 HLLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIH 52
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.37.1.5
Length = 121
Score = 31.5 bits (71), Expect = 0.014
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 34 PFKCVVCKQFFATYSGAYQHLRRTHG 59
C+ C + FA+ + H + H
Sbjct: 15 HTPCLFCDRLFASAEETFSHCKLEHQ 40
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 30.1 bits (67), Expect = 0.015
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 15 RMFRIHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHG 59
R + +++ H R HT +P+ C C F T +H++
Sbjct: 10 RXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 32.1 bits (72), Expect = 0.016
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 27 RKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQESCSSL 66
+ ++C VC + H +HG +L
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAH-VASHGLHGNMTL 211
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 29.8 bits (68), Expect = 0.016
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
TG P++C C + F+ H ++TH
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSH-QKTH 35
Score = 23.2 bits (51), Expect = 5.6
Identities = 3/13 (23%), Positives = 6/13 (46%)
Query: 25 HYRKHTGRKPFKC 37
H + H+G+
Sbjct: 31 HQKTHSGQSGPSS 43
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 30.9 bits (71), Expect = 0.017
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 23 RNHYRKHTGRKPFKCVV--CKQFFATYSGAYQHLRRTH 58
R H R HTG +P+ C C + FA + H TH
Sbjct: 81 RTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH-ILTH 117
Score = 29.4 bits (67), Expect = 0.075
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 23 RNHYRKHTGRKPFKCVV--CKQFFATYSGAYQHLRRTH 58
+ H HTG KPF+C C + F+ H R H
Sbjct: 51 KRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTH-VRIH 87
Score = 25.6 bits (57), Expect = 1.8
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 23 RNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
R H H G + C C + F S +H + H
Sbjct: 24 RKHLHTH-GPRVHVCAECGKAFVESSKLKRH-QLVH 57
Score = 23.6 bits (52), Expect = 9.5
Identities = 3/14 (21%), Positives = 6/14 (42%)
Query: 23 RNHYRKHTGRKPFK 36
++H H K +
Sbjct: 111 KSHILTHAKAKNNQ 124
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.018
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Query: 67 KALRKLRGP-KP-KPDSTRSL 85
+AL+KL+ K DS +L
Sbjct: 20 QALKKLQASLKLYADDSAPAL 40
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 30.2 bits (69), Expect = 0.019
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 25 HYR--KHTGRKPFKCVVCKQFFATYSGAYQHLRRTHG 59
HY K + C C + F H++ H
Sbjct: 29 HYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 28.3 bits (64), Expect = 0.10
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 27 RKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
G ++C VC + + S +H +H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSH 34
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 29.4 bits (67), Expect = 0.040
Identities = 3/18 (16%), Positives = 8/18 (44%)
Query: 23 RNHYRKHTGRKPFKCVVC 40
+ H + H+ + + C
Sbjct: 57 KEHMKLHSDTRDYICEFS 74
Score = 29.4 bits (67), Expect = 0.047
Identities = 6/32 (18%), Positives = 10/32 (31%), Gaps = 2/32 (6%)
Query: 29 HTGRKPFKCVV--CKQFFATYSGAYQHLRRTH 58
+G C C + F+ H + H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
Score = 27.1 bits (61), Expect = 0.33
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 23 RNHYR-KHTGRKPFKC--VVCKQFFATYSGAYQHLRRTH 58
+H + +H +K F C C + F +H + H
Sbjct: 26 NHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH-MKLH 63
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 28.4 bits (64), Expect = 0.053
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 25 HYRKHTGRKPFKC 37
H R H+G KP
Sbjct: 33 HRRSHSGVKPSGP 45
Score = 27.7 bits (62), Expect = 0.10
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 24 NHYRKHTGRKPFKCVV--CKQFFATYSGAYQHLRRTH 58
+ TG KPF C C F+ S RR+H
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSR-SDELSRHRRSH 37
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 28.2 bits (64), Expect = 0.054
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 27 RKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+G P++C C + F H +RTH
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISH-QRTH 33
Score = 24.8 bits (55), Expect = 1.4
Identities = 4/13 (30%), Positives = 4/13 (30%)
Query: 25 HYRKHTGRKPFKC 37
H R H G
Sbjct: 29 HQRTHAGESGPSS 41
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 29.2 bits (65), Expect = 0.076
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 22 IRNHYRKHTGRKPFKC 37
+ NH R HTG K
Sbjct: 78 LVNHIRVHTGEKSGPS 93
Score = 27.2 bits (60), Expect = 0.34
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 29 HTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+ C + F+T H+ H
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 29.8 bits (66), Expect = 0.089
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 33 KPFKCVVCKQFFATYSGAYQHLRRTHGQESCSSL 66
+ C VC F+T S +HLR H ++ + L
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDHRDDASTLL 148
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 28.3 bits (62), Expect = 0.16
Identities = 8/48 (16%), Positives = 18/48 (37%)
Query: 17 FRIHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQESCS 64
F ++ + K C+ C + F + ++H H Q + +
Sbjct: 52 FFSPELKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMA 99
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 27.8 bits (61), Expect = 0.24
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 12 IQVRMFRIHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQESCSSLKALRK 71
+ MF H+ H + CV C Y +H + H E L +++
Sbjct: 29 PDLNMFTFHVDSEHPNVVL-NSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKR 87
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 26.5 bits (59), Expect = 0.27
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE 61
G P+ C C + F H +R+ Q
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH-QRSCSQS 37
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 26.6 bits (58), Expect = 0.30
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 29 HTGRKPFKCVVCKQFFATYSGAYQHLR 55
+G++PF C +C F T + +HL+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 27.0 bits (60), Expect = 0.34
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 23 RNHYRKHTGRKPFKCVV--CKQFFATYSGAYQHLRRTH 58
+ H R HTG KPF C C++ FA +H RRTH
Sbjct: 36 KAHTRTHTGEKPFSCSWKGCERRFARSDELSRH-RRTH 72
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 27.6 bits (60), Expect = 0.40
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 24 NHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQESCS 64
F C +C F++ QH+R T + C
Sbjct: 64 YRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCP 104
Score = 25.7 bits (55), Expect = 1.6
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 22 IRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHG 59
++ H R C VCK+ F + A H+ + H
Sbjct: 90 LKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHN 125
>2nr5_A Hypothetical protein SO2669; PSI-2, MCSG, MAD, structural G
protein structure initiative, midwest center for
structural genomics; 1.90A {Shewanella oneidensis}
SCOP: a.25.6.1
Length = 67
Score = 26.3 bits (57), Expect = 0.58
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 54 LRRTHGQESCSSLKALRKLRGPKPKPDST 82
++R+ +E+ LKA+R+L G + DS+
Sbjct: 13 IQRSMAEEALGKLKAIRQLCGAEDSSDSS 41
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 25.2 bits (56), Expect = 0.96
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 27 RKHTGRKPFKCVVCKQFFATYSGAYQHLRRTH 58
+G++ ++C C + F H R H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLH-ERIH 33
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 1.3
Identities = 6/68 (8%), Positives = 20/68 (29%), Gaps = 16/68 (23%)
Query: 5 GKTKSTDIQVRMFRIHIIRNH----------------YRKHTGRKPFKCVVCKQFFATYS 48
G +T Q++ ++ +I N ++ + ++ A
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
Query: 49 GAYQHLRR 56
++ +
Sbjct: 578 AIFEEAHK 585
>3end_A Light-independent protochlorophyllide reductase iron-sulfur
ATP-binding protein; BCHL, electron donor, DPOR, Fe
protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter
sphaeroides 2} PDB: 3fwy_A*
Length = 307
Score = 25.9 bits (57), Expect = 1.6
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 77 PKPDSTRSLRKKK 89
PK DST +L
Sbjct: 79 PKHDSTFTLTGSL 91
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 1.9
Identities = 15/109 (13%), Positives = 26/109 (23%), Gaps = 46/109 (42%)
Query: 18 RIHIIRNHYR-KHTGRKP---------FKCV------VCKQF----------------FA 45
+I+N+ + ++P F+ V + F +
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 46 TYSGAYQHLRRTHGQ---------ESCSS-----LKALRKLRGPKPKPD 80
TY L + + L L L P PD
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 25.0 bits (54), Expect = 2.0
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQH 53
+ H G + KC C F S +
Sbjct: 9 RQKIHLGDRSQKCSKCGIIFIRRSTLSRR 37
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 23.7 bits (50), Expect = 3.7
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 29 HTGRKPFKCVVCKQFFATYSGAYQHLRRTHG 59
+G KP+ C VC F H+R G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 24.5 bits (52), Expect = 4.1
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 29 HTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQESCSSLKALRKLRGP 75
+ KC C++ F + +G H H + + + GP
Sbjct: 49 QKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDAEASEGGESGP 95
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur,
metal-binding, molybdenum, oxidoreductase; HET: HCA CFN
CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii}
SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E*
1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A
1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A*
1rw4_A
Length = 289
Score = 25.0 bits (55), Expect = 4.1
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 77 PKPDSTRSLRKKK 89
PK DSTR + K
Sbjct: 40 PKADSTRLILHSK 52
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium
pasteurianum} SCOP: c.37.1.10
Length = 269
Score = 24.6 bits (54), Expect = 6.0
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 77 PKPDSTRSLRKKK 89
PK DSTR L
Sbjct: 39 PKADSTRLLLGGL 51
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 23.0 bits (49), Expect = 8.3
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 23 RNHYRKHTGRKPFKCVVC 40
H H+G KP+
Sbjct: 29 NRHKLSHSGEKPYSSGPS 46
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class
I, activator, RNA polymeras holoenzyme, sigma70, open
complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia
coli k-12}
Length = 613
Score = 24.2 bits (52), Expect = 8.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 67 KALRKLRGPK 76
KALRKLR P
Sbjct: 593 KALRKLRHPS 602
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 22.4 bits (47), Expect = 8.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 33 KPFKCVVCKQFFATYSGAYQHLRRTHGQE 61
KP +CV+C + F S H+R+ G++
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 22.1 bits (47), Expect = 9.8
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 33 KPFKCVVCKQFFATYSGAYQHLRRTHG 59
K + C +C + F +H ++ H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHS 27
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.137 0.427
Gapped
Lambda K H
0.267 0.0543 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,346,359
Number of extensions: 63922
Number of successful extensions: 547
Number of sequences better than 10.0: 1
Number of HSP's gapped: 494
Number of HSP's successfully gapped: 277
Length of query: 89
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 32
Effective length of database: 5,110,296
Effective search space: 163529472
Effective search space used: 163529472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.8 bits)