RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13211
         (89 letters)



>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 37.3 bits (87), Expect = 6e-06
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 27 RKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE 61
          R H+G KP++C +C   F        H+ + H + 
Sbjct: 1  RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35


>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 30.4 bits (69), Expect = 0.003
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 27 RKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHG 59
          R HTG KP+ C  C + F        H +R H 
Sbjct: 1  RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 33


>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 33

 Score = 30.3 bits (69), Expect = 0.003
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 29 HTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE 61
          H+G KP+ CV C + F+  S   QH +R H  E
Sbjct: 2  HSGEKPYGCVECGKAFSRSSILVQH-QRVHTGE 33


>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
          protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 38

 Score = 30.1 bits (68), Expect = 0.005
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE 61
             +   R+ +KC  C + F+  S   +H RRTH  E
Sbjct: 3  SEWQQRERRRYKCDECGKSFSHSSDLSKH-RRTHTGE 38


>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 37

 Score = 29.3 bits (66), Expect = 0.007
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 25 HYRKHTGRKPFKCVVCKQFFATYSGAYQHLR 55
            R  TG KPF+C  C + F+       H +
Sbjct: 2  STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32


>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 39

 Score = 28.8 bits (65), Expect = 0.014
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query: 30 TGRKPFKCVVCKQFFATYSGAYQHLRRTHGQE 61
          +  KP+ C  C + F+       H+++ H  E
Sbjct: 1  SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSE 32



 Score = 24.6 bits (54), Expect = 0.54
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 20 HIIRNHYRKHTGRKPFKCVV 39
          H+  +  + HT  +P KC V
Sbjct: 20 HLNGHIKQVHTSERPHKCQV 39


>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 26.2 bits (58), Expect = 0.11
 Identities = 3/15 (20%), Positives = 8/15 (53%)

Query: 23 RNHYRKHTGRKPFKC 37
          + H + H+  + + C
Sbjct: 20 KEHMKLHSDTRDYIC 34


>d2nr5a1 a.25.6.1 (A:1-64) Hypothetical protein SO2669 {Shewanella
          oneidensis [TaxId: 70863]}
          Length = 64

 Score = 26.3 bits (57), Expect = 0.23
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 54 LRRTHGQESCSSLKALRKLRGPKPKPDST 82
          ++R+  +E+   LKA+R+L G +   DS+
Sbjct: 10 IQRSMAEEALGKLKAIRQLCGAEDSSDSS 38


>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 35

 Score = 24.3 bits (53), Expect = 0.72
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 29 HTGRKPFKCVVCKQFFATYSGAYQHLR 55
           +G++PF C +C   F T +   +HL+
Sbjct: 2  SSGKRPFVCRICLSAFTTKANCARHLK 28


>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 47

 Score = 24.1 bits (52), Expect = 0.98
 Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 2/34 (5%)

Query: 24 NHYRKHTGRKPFKCVVCK--QFFATYSGAYQHLR 55
          + Y K    K F+C+     + F        H++
Sbjct: 8  DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQ 41


>d2oq1a1 d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 130

 Score = 25.0 bits (54), Expect = 1.1
 Identities = 9/73 (12%), Positives = 20/73 (27%)

Query: 16  MFRIHIIRNHYRKHTGRKPFKCVVCKQFFATYSGAYQHLRRTHGQESCSSLKALRKLRGP 75
                +  +H+           +   +     +   +   R      C+  K   +  G 
Sbjct: 47  SLVHDVRFHHFPIERQLNGTYAIAGGKAHCGPAELCEFYSRDPDGLPCNLRKPCNRPSGL 106

Query: 76  KPKPDSTRSLRKK 88
           +P+P     LR  
Sbjct: 107 EPQPGVFDCLRDA 119


>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 121

 Score = 24.0 bits (52), Expect = 2.3
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 34 PFKCVVCKQFFATYSGAYQHLRRTHG 59
             C+ C + FA+    + H +  H 
Sbjct: 15 HTPCLFCDRLFASAEETFSHCKLEHQ 40


>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 28

 Score = 21.8 bits (47), Expect = 4.3
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 33 KPFKCVVCKQFFATYSGAYQHLRRTH 58
          KPF+C +C + F+       H  RTH
Sbjct: 2  KPFQCRICMRNFSRSDHLTTH-IRTH 26


>d2ghfa1 g.37.1.1 (A:45-102) Zinc fingers and homeoboxes protein
          1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 58

 Score = 22.1 bits (47), Expect = 6.3
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 35 FKCVVCKQFFATYSGAYQHLRRTHGQESCSSLKALRK 71
          + CV C      Y    +H  + H  E    L  +++
Sbjct: 7  YVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKR 43


>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus
           scrofa) [TaxId: 9823]}
          Length = 195

 Score = 23.0 bits (49), Expect = 6.8
 Identities = 6/42 (14%), Positives = 12/42 (28%)

Query: 1   MFFHGKTKSTDIQVRMFRIHIIRNHYRKHTGRKPFKCVVCKQ 42
           + + G     D+   +  I   R           FK  +  +
Sbjct: 72  LLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYE 113


>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
          Saccharomyces cerevisiae sequence}
          Length = 29

 Score = 21.4 bits (46), Expect = 7.2
 Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)

Query: 33 KPFKCVVCKQFFATYSGAYQHLRRTH 58
          + F C VC + FA      +H  R+H
Sbjct: 1  RSFVCEVCTRAFARQEHLKRH-YRSH 25


>d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga
          maritima [TaxId: 2336]}
          Length = 322

 Score = 23.1 bits (48), Expect = 7.4
 Identities = 4/16 (25%), Positives = 8/16 (50%)

Query: 65 SLKALRKLRGPKPKPD 80
           L+ L+K R  + +  
Sbjct: 6  PLEELKKYRPERYEEK 21


>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 29

 Score = 21.1 bits (45), Expect = 8.5
 Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)

Query: 33 KPFKCVVCKQFFATYSGAYQHLRRTHGQE 61
          K F C  C + F       +H  +TH  +
Sbjct: 1  KKFACPECPKRFMRSDHLSKH-IKTHQNK 28


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 341,902
Number of extensions: 13771
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 45
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.3 bits)