Query psy13217
Match_columns 422
No_of_seqs 336 out of 2096
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 23:08:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13217.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13217hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nd0_A SLL0855 protein; CLC fa 100.0 1.7E-45 5.8E-50 382.9 25.7 287 48-376 3-297 (466)
2 4ene_A CLC-EC1, H(+)/CL(-) exc 100.0 6.3E-43 2.1E-47 362.1 26.6 244 75-359 19-266 (446)
3 1ots_A Voltage-gated CLC-type 100.0 4.9E-43 1.7E-47 364.7 25.9 248 72-359 32-281 (465)
4 3org_A CMCLC; transporter, tra 100.0 2.3E-41 7.9E-46 364.4 25.2 252 72-357 6-262 (632)
5 4ene_A CLC-EC1, H(+)/CL(-) exc 99.7 1.4E-15 4.8E-20 157.2 20.9 187 77-292 238-424 (446)
6 1ots_A Voltage-gated CLC-type 99.7 3.2E-15 1.1E-19 155.3 20.5 188 76-292 252-439 (465)
7 3nd0_A SLL0855 protein; CLC fa 99.6 2.1E-15 7E-20 156.7 17.1 184 77-292 248-431 (466)
8 3org_A CMCLC; transporter, tra 99.4 1.3E-11 4.5E-16 132.8 18.0 182 78-293 237-426 (632)
9 2pq4_B Periplasmic nitrate red 24.6 30 0.001 22.3 1.3 24 235-258 4-27 (35)
10 1rh5_B Preprotein translocase 15.6 3.5E+02 0.012 20.2 5.8 35 68-102 29-64 (74)
No 1
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=100.00 E-value=1.7e-45 Score=382.90 Aligned_cols=287 Identities=17% Similarity=0.213 Sum_probs=215.7
Q ss_pred ccccccchhhhhhhhcc-cchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHH
Q psy13217 48 LDFSVKQSKLSNYFQGG-QSSLVGFYVLR-WAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLG 125 (422)
Q Consensus 48 ldy~~~~~~~~~~~~r~-~~~~~~~~~~~-w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (422)
+|||.+++. +.++.|+ ..+..++...+ ++.++++|+++|+++.+|+.++++++++++++.+... ..++..|+.++
T Consensus 3 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~l~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~- 79 (466)
T 3nd0_A 3 ADFETSNRR-WLDKLPRNLTDSARSLHPRTLVAAIVVGLITGVLGAGFKSAVNNMLQWRSQLAQILA-PIPPLAWLVTA- 79 (466)
T ss_dssp ------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST-TSCTHHHHHHH-
T ss_pred ccHHHHHHH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccHHHHHHHH-
Confidence 689998444 4333322 22223333334 4489999999999999999999999999988754221 11222344433
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHH
Q psy13217 126 LAGFNMIFLGIACALCLFFAMEASGGNVSGVMAYLNGSRIKKFFTIRTVLVKMCSTTAMMCTATPGGMEGPIIHIGAAVG 205 (422)
Q Consensus 126 ~~~~~~~~~~i~~~l~~~~~p~a~GsGipei~~~l~G~~~~~~l~~~~l~~K~i~~~lsv~sG~s~GrEGP~v~iGA~ig 205 (422)
+++.+++.+++++++++.|.++|||||||+++++|.. +..+.++++.|++++++++++|+|+|||||++|+||++|
T Consensus 80 --~~~~~~~~l~~~l~~~~~p~a~GsGIp~v~~~l~g~~--~~~~~~~~~~k~~~~~ltig~G~S~GrEGP~vqiGa~ig 155 (466)
T 3nd0_A 80 --LISGGMVALSFWLMKRFAPDTSGSGIPQIEGHLEGKL--PLVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIG 155 (466)
T ss_dssp --HHHHHHHHHHHHHHTTTCGGGSBCSHHHHHHHTTSSS--CCCHHHHHHHHHHHHHHHHHTTCSCCTHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHCCCcCCCCHHHHHHHHcCCC--CCchHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHH
Confidence 4566667778888888999999999999999999864 345679999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCccccccccccccCChhhhhHHHHHhHHHhhhhhcCCchhHhHhHhhhccccccc--chHHHHHHHHH
Q psy13217 206 NIAPIVIAKLPLPTKFRTAPSLAYLNSVSERRDLSVCGVAAGVSAGFGAPFGGIFLALEETTTFFSA--EMLPRLVVGSF 283 (422)
Q Consensus 206 ~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~r~li~aGaAAGvAAaF~APIgGvlFalE~~~~~~~~--~~l~~~~~as~ 283 (422)
+.++|+ ++ ++++|+|++++||+|||+||+|||||+|++|++||+.++|++ ..++|++++|+
T Consensus 156 ~~l~~~---------~~--------~~~~~~r~ll~aGaAAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~ 218 (466)
T 3nd0_A 156 QMTGGW---------FK--------ATQENQRILIAVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQTLAYHSLLFGCV 218 (466)
T ss_dssp HHHHHH---------TT--------CCHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHSSSCCCCSSCCTTHHHHHHHHH
T ss_pred HHHHHH---------cC--------CChhHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhhccccHHHHHHHHHHHHHH
Confidence 999998 33 478899999999999999999999999999999999988854 55679999999
Q ss_pred HHHHHHHHHhhhhhccccCccccccccccccccccccCcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCC-
Q psy13217 284 LAKFISDILEQSFVESELEPGEMFYKLVPHLRLAEVLTPENEQKGNYPIVTPDKKVIGDISRCLLYKLMASQVFDAPQP- 362 (422)
Q Consensus 284 iA~~v~~~l~~~~~~~~~~p~~~~~g~~p~f~i~~~~~~~~~~~~~~~~~~~lGv~~Gl~g~lF~~~l~~~~~~~~~~~- 362 (422)
+|+++++.+ +|.+|.|.++.... .+..++++++++|++||++|.+|++.+.+.++++++.+
T Consensus 219 ~a~~v~~~~---------------~g~~~~f~~~~~~~---~~~~~l~~~illGi~~Gl~g~lf~~~~~~~~~~~~~~~~ 280 (466)
T 3nd0_A 219 MATIILRMI---------------RGQSAIISLTEFKR---VPLDSLWMFIILGILFGVMGYTFNRGLFKVLDWFDRLPP 280 (466)
T ss_dssp HHHHHHHHH---------------TCSSCSSCCTTCCC---CCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHH---------------cCCCCceecCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 999999987 56677777765431 36788999999999999999999999999988876543
Q ss_pred Ccc---hhhhhHHHHHh
Q psy13217 363 FPE---DGYSSLYKIIF 376 (422)
Q Consensus 363 ~p~---~~~~gli~~~~ 376 (422)
.|+ ....+++.++.
T Consensus 281 ~~~~~~~~l~g~~~g~l 297 (466)
T 3nd0_A 281 LATKWKGFLLGSIIGIL 297 (466)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 222 23445555554
No 2
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=100.00 E-value=6.3e-43 Score=362.09 Aligned_cols=244 Identities=19% Similarity=0.241 Sum_probs=205.3
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHhhHHHHHHHHHHHHHHHHHhhhcCCCCH
Q psy13217 75 RWA-MVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLGIACALCLFFAMEASGGNV 153 (422)
Q Consensus 75 ~w~-~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~p~a~GsGi 153 (422)
+|+ .++++|+++|+++.+|+.++++++++++++..... ..+|..|+.+++++.+++++++++++++.|.++||||
T Consensus 19 ~~~~~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGi 94 (446)
T 4ene_A 19 AILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTA----DNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGI 94 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccchHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCH
Confidence 454 89999999999999999999999999988754211 1233333211245667788899999999999999999
Q ss_pred HHHHHHHhhccccccchHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHhhCCCCccccccccccccCCh
Q psy13217 154 SGVMAYLNGSRIKKFFTIRTVLVKMCSTTAMMCTATPGGMEGPIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLNSV 233 (422)
Q Consensus 154 pei~~~l~G~~~~~~l~~~~l~~K~i~~~lsv~sG~s~GrEGP~v~iGA~ig~~l~~~~~~l~~~~~~~l~~~~~~~~~~ 233 (422)
|||+++++|.. +..++|+++.|++++++++++|+|+|||||++|+||++|+.++|+ ++ .++
T Consensus 95 p~v~~~l~~~~--~~~~~r~~~~k~~~~~lti~~G~s~GrEGP~vqiGa~ig~~~~~~---------~~--------~~~ 155 (446)
T 4ene_A 95 PEIEGALEDQR--PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDI---------FR--------LKG 155 (446)
T ss_dssp HHHHHHHHTCS--CCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHH---------TT--------CCS
T ss_pred HHHHHHHhCCC--ccchHHHHHHHHHHHHHHHhcCCccCCcchHHHHHHHHHHHHHHH---------cC--------CCH
Confidence 99999999753 334479999999999999999999999999999999999999998 33 356
Q ss_pred hhhh-HHHHHhHHHhhhhhcCCchhHhHhHhhhccccccc--chHHHHHHHHHHHHHHHHHHhhhhhccccCcccccccc
Q psy13217 234 SERR-DLSVCGVAAGVSAGFGAPFGGIFLALEETTTFFSA--EMLPRLVVGSFLAKFISDILEQSFVESELEPGEMFYKL 310 (422)
Q Consensus 234 ~~~r-~li~aGaAAGvAAaF~APIgGvlFalE~~~~~~~~--~~l~~~~~as~iA~~v~~~l~~~~~~~~~~p~~~~~g~ 310 (422)
+|+| ++++||+|||+||+|||||+|++|++||+.++|++ +.++|++++|++|+++++.+ +|.
T Consensus 156 ~~~r~~ll~aGaaAG~aaaF~aPlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~---------------~g~ 220 (446)
T 4ene_A 156 DEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIF---------------NHE 220 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTSCSSSCCCCCHHHHHHHHHHHHHHHHHT---------------TTT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH---------------cCC
Confidence 6776 99999999999999999999999999999988877 67999999999999999986 466
Q ss_pred ccccccccccCcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhC
Q psy13217 311 VPHLRLAEVLTPENEQKGNYPIVTPDKKVIGDISRCLLYKLMASQVFDA 359 (422)
Q Consensus 311 ~p~f~i~~~~~~~~~~~~~~~~~~~lGv~~Gl~g~lF~~~l~~~~~~~~ 359 (422)
+|.|+++..+. .+..+++.++++|++||++|.+|++.+++.+++++
T Consensus 221 ~~~~~~~~~~~---~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~ 266 (446)
T 4ene_A 221 VALIDVGKLSD---APLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLH 266 (446)
T ss_dssp CCSCCCCCCCC---CCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeecCCCCc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777665432 25678899999999999999999999999888764
No 3
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=100.00 E-value=4.9e-43 Score=364.73 Aligned_cols=248 Identities=19% Similarity=0.254 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHhhHHHHHHHHHHHHHHHHHhhhcCCC
Q psy13217 72 YVLRWAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLGIACALCLFFAMEASGG 151 (422)
Q Consensus 72 ~~~~w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~p~a~Gs 151 (422)
.+..|+.++++|+++|+++.+|+.+++++++++++......+ .....|+.++ ++|++++++++++++++.|.++|+
T Consensus 32 ~~~~~~~~~liGv~~Gl~~~~f~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~ll~~~l~~~~~p~a~Gs 107 (465)
T 1ots_A 32 PLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTAD-NYPLLLTVAF---LCSAVLAMFGYFLVRKYAPEAGGS 107 (465)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHH---HHHHHHHHHHHHHHHHHCGGGSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccccHHHHHH---HHHHHHHHHHHHHHHHhCccccCC
Confidence 355677999999999999999999999999999887542110 0111244444 688888999999999999999999
Q ss_pred CHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHhhCCCCccccccccccccC
Q psy13217 152 NVSGVMAYLNGSRIKKFFTIRTVLVKMCSTTAMMCTATPGGMEGPIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLN 231 (422)
Q Consensus 152 Gipei~~~l~G~~~~~~l~~~~l~~K~i~~~lsv~sG~s~GrEGP~v~iGA~ig~~l~~~~~~l~~~~~~~l~~~~~~~~ 231 (422)
|+||++++++|.. +..++++++.|++++++++++|+|+|||||++|+||++|+.++|+ +++ +
T Consensus 108 Gip~v~~~l~~~~--~~~~~r~~~~k~~~~~lti~sG~s~GrEGP~vqiGa~ig~~l~~~---------~~l-------~ 169 (465)
T 1ots_A 108 GIPEIEGALEDQR--PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDI---------FRL-------K 169 (465)
T ss_dssp SHHHHHHHHTTCS--CCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHH---------TTC-------C
T ss_pred ChHHHHHHHhCCC--CCCcHHHHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHHHHH---------hcc-------C
Confidence 9999999999853 345689999999999999999999999999999999999999998 331 3
Q ss_pred ChhhhhHHHHHhHHHhhhhhcCCchhHhHhHhhhcccccccch--HHHHHHHHHHHHHHHHHHhhhhhccccCccccccc
Q psy13217 232 SVSERRDLSVCGVAAGVSAGFGAPFGGIFLALEETTTFFSAEM--LPRLVVGSFLAKFISDILEQSFVESELEPGEMFYK 309 (422)
Q Consensus 232 ~~~~~r~li~aGaAAGvAAaF~APIgGvlFalE~~~~~~~~~~--l~~~~~as~iA~~v~~~l~~~~~~~~~~p~~~~~g 309 (422)
+++|+|++++||+|||+||+|||||+|++|++||+.++|+.+. +++++++|++|+++++.+ +|
T Consensus 170 ~~~~~r~li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~---------------~G 234 (465)
T 1ots_A 170 GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIF---------------NH 234 (465)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHHHHHHHHHH---------------SC
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH---------------cC
Confidence 7889999999999999999999999999999999999998777 999999999999999986 57
Q ss_pred cccccccccccCcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhC
Q psy13217 310 LVPHLRLAEVLTPENEQKGNYPIVTPDKKVIGDISRCLLYKLMASQVFDA 359 (422)
Q Consensus 310 ~~p~f~i~~~~~~~~~~~~~~~~~~~lGv~~Gl~g~lF~~~l~~~~~~~~ 359 (422)
.+|.|.++.... .++.++++++++|++||++|.+|++.+++.+++++
T Consensus 235 ~~~~f~~~~~~~---~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~ 281 (465)
T 1ots_A 235 EVALIDVGKLSD---APLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLH 281 (465)
T ss_dssp SCCSSCCCCCCC---CCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeecCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777665431 25678999999999999999999999999888764
No 4
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=100.00 E-value=2.3e-41 Score=364.41 Aligned_cols=252 Identities=16% Similarity=0.281 Sum_probs=201.7
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHhhHHHHHHHHHHHHHHHHHhhhcCC
Q psy13217 72 YVLRWA-MVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLGIACALCLFFAMEASG 150 (422)
Q Consensus 72 ~~~~w~-~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~p~a~G 150 (422)
...||+ +++++|+++|+++.+++.+++++++++......... ..+|+.|+ ++|+++++++++++++++|.++|
T Consensus 6 ~~~r~~~~~~lvGi~~gl~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~l~~~~~p~a~G 79 (632)
T 3org_A 6 YLLRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKISRLAGR---FAGYILYV---VSGVALCLLSTFWCAVLSTEAEG 79 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH---HHHHHHHH---HHHHHHHHHHHHHHHHSCGGGCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHH---HHHHHHHHHHHHHHHhcCCccCC
Confidence 345666 889999999999999999999999987654332211 23455554 68899999999999999999999
Q ss_pred CCHHHHHHHHhhcc--ccccchHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHH--HHhhCCCCcccccccc
Q psy13217 151 GNVSGVMAYLNGSR--IKKFFTIRTVLVKMCSTTAMMCTATPGGMEGPIIHIGAAVGNIAPI--VIAKLPLPTKFRTAPS 226 (422)
Q Consensus 151 sGipei~~~l~G~~--~~~~l~~~~l~~K~i~~~lsv~sG~s~GrEGP~v~iGA~ig~~l~~--~~~~l~~~~~~~l~~~ 226 (422)
||||||+++++|.. .++.+++++++.|++++++++++|+|+|||||++|+||++|+.+++ .+ +
T Consensus 80 sGIp~v~~~l~g~~~~~~~~~~~~~~~~K~~~~~l~igsG~s~GrEGP~vqiGa~ig~~~~~~~~f---------~---- 146 (632)
T 3org_A 80 SGLPQMKSILSGFYDKMRSALELRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRLGVF---------K---- 146 (632)
T ss_dssp CSHHHHHHHTTTTHHHHGGGGSHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHTTSHHH---------H----
T ss_pred CCHHHHHHHHhCccccccccccHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHhhhhhh---------c----
Confidence 99999999999975 6778899999999999999999999999999999999999998888 52 2
Q ss_pred ccccCChhhhhHHHHHhHHHhhhhhcCCchhHhHhHhhhcccccccchHHHHHHHHHHHHHHHHHHhhhhhccccCcccc
Q psy13217 227 LAYLNSVSERRDLSVCGVAAGVSAGFGAPFGGIFLALEETTTFFSAEMLPRLVVGSFLAKFISDILEQSFVESELEPGEM 306 (422)
Q Consensus 227 ~~~~~~~~~~r~li~aGaAAGvAAaF~APIgGvlFalE~~~~~~~~~~l~~~~~as~iA~~v~~~l~~~~~~~~~~p~~~ 306 (422)
+.+.++.+||++++||+|||+||+|||||||++|++||+.++|+.+.+||++++|++|+++++.+.... . .. .
T Consensus 147 -~~~~~~~~~r~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~~~---~-~~-~- 219 (632)
T 3org_A 147 -ELCTDRALRLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYELLYTTP---L-VE-A- 219 (632)
T ss_dssp -HHHHSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEETTHHHHHHHHHHHHHHHTTC---------------
T ss_pred -cccCCHHHHHHHHHHHHHHHHHHHhCCccHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCc---c-cc-c-
Confidence 112478899999999999999999999999999999999999999999999999999999988652200 0 00 0
Q ss_pred ccccccccccccccCcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy13217 307 FYKLVPHLRLAEVLTPENEQKGNYPIVTPDKKVIGDISRCLLYKLMASQVF 357 (422)
Q Consensus 307 ~~g~~p~f~i~~~~~~~~~~~~~~~~~~~lGv~~Gl~g~lF~~~l~~~~~~ 357 (422)
+++ +.|.+. .+ .+..++ +++++|++||++|.+|+++.+..+++
T Consensus 220 ~~~--~~~~~~---~~--~~~~~l-~~~~lGi~~Gl~g~~f~~~~~~~~~~ 262 (632)
T 3org_A 220 FEG--TNFDAS---DV--SRTQTL-LYAILGALMGVLGALFIRCVRSIYEL 262 (632)
T ss_dssp --------------CC--CCSCTH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc--cccccc---CC--CcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011 122221 12 256788 89999999999999999998877653
No 5
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=99.68 E-value=1.4e-15 Score=157.24 Aligned_cols=187 Identities=19% Similarity=0.291 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHhhHHHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy13217 77 AMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLGIACALCLFFAMEASGGNVSGV 156 (422)
Q Consensus 77 ~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~p~a~GsGipei 156 (422)
...+++|+++|+++.+|.....+.++++.+... .++..++ ..+.+.+.+++.+ .++.|+..|.|.+.+
T Consensus 238 ~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~--------~~~~~~~---~~~~l~g~~~g~l-~~~~p~~~G~G~~~i 305 (446)
T 4ene_A 238 WLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHG--------GNITKWV---LMGGAIGGLCGLL-GFVAPATSGGGFNLI 305 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------TCHHHHH---HHHHHHHHHHHHH-HHHCGGGSSCCSTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------cchhHHH---HHHHHHHHHHHHH-HHHhHhhcCCcHHHH
Confidence 346889999999999999999999887765432 1222222 2334445556654 557899999999999
Q ss_pred HHHHhhccccccchHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHhhCCCCccccccccccccCChhhh
Q psy13217 157 MAYLNGSRIKKFFTIRTVLVKMCSTTAMMCTATPGGMEGPIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLNSVSER 236 (422)
Q Consensus 157 ~~~l~G~~~~~~l~~~~l~~K~i~~~lsv~sG~s~GrEGP~v~iGA~ig~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 236 (422)
+..++|.... ..-...++.|++.+.+|+++|.++|...|++.+||++|..++.....+ +. ....+.
T Consensus 306 ~~~~~~~~~~-~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~-----~p--------~~~~~~ 371 (446)
T 4ene_A 306 PIATAGNFSM-GMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVEL-----FP--------QYHLEA 371 (446)
T ss_dssp HHHHTTCSCH-HHHHHHHHHHHHHHHHHHTTTCSSBSHHHHHHHHHHHHHHHHHHHHHH-----CG--------GGTCCH
T ss_pred HHHHcCCchH-HHHHHHHHHHHHHHHHHHccCCCcchhHHHHHHHHHHHHHHHHHHHHh-----CC--------ccccCH
Confidence 9988875321 122456789999999999999999999999999999999999874221 00 012466
Q ss_pred hHHHHHhHHHhhhhhcCCchhHhHhHhhhcccccccchHHHHHHHHHHHHHHHHHH
Q psy13217 237 RDLSVCGVAAGVSAGFGAPFGGIFLALEETTTFFSAEMLPRLVVGSFLAKFISDIL 292 (422)
Q Consensus 237 r~li~aGaAAGvAAaF~APIgGvlFalE~~~~~~~~~~l~~~~~as~iA~~v~~~l 292 (422)
..+..+||||-++++.|+|++++++.+|++.+ ++.+.|.+++|++|+.+++.+
T Consensus 372 ~~~a~vGmaa~~a~~~~aPlt~~vl~~Eltg~---~~~~lpl~ia~~ia~~v~~~~ 424 (446)
T 4ene_A 372 GTFAIAGMGALLAASIRAPLTGIILVLEMTDN---YQLILPMIITGLGATLLAQFT 424 (446)
T ss_dssp HHHHHHHHTHHHHHHTCCHHHHHHHHHHHHCC---GGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHCC---hhHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999986 788999999999999999986
No 6
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=99.66 E-value=3.2e-15 Score=155.31 Aligned_cols=188 Identities=19% Similarity=0.285 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHhhHHHHHHHHHHHHHHHHHhhhcCCCCHHH
Q psy13217 76 WAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLGIACALCLFFAMEASGGNVSG 155 (422)
Q Consensus 76 w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~p~a~GsGipe 155 (422)
+...+++|+++|+++.+|.....+.++++.+... ...|.. + ..+.+++++++.+ .++.|+..|.|.+.
T Consensus 252 l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~-------~~~~~~-~---~~~~i~gl~~g~l-~~~~P~~lG~G~~~ 319 (465)
T 1ots_A 252 LWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHG-------GNITKW-V---LMGGAIGGLCGLL-GFVAPATSGGGFNL 319 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TCHHHH-H---HHHHHHHHHHHHH-HHHCGGGSSCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------CCchhH-H---HHHHHHHHHHHHH-HHHhHhhcCChHHH
Confidence 4467999999999999999999999888765421 112311 1 2456667777765 55779999999999
Q ss_pred HHHHHhhccccccchHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHhhCCCCccccccccccccCChhh
Q psy13217 156 VMAYLNGSRIKKFFTIRTVLVKMCSTTAMMCTATPGGMEGPIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLNSVSE 235 (422)
Q Consensus 156 i~~~l~G~~~~~~l~~~~l~~K~i~~~lsv~sG~s~GrEGP~v~iGA~ig~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~ 235 (422)
++..+++.. +-..-...++.|++.+.+|+++|.++|...|++.+||++|..+++.+..+ +. ....+
T Consensus 320 i~~~~~~~~-~~~~l~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~-----------~p--~~~~~ 385 (465)
T 1ots_A 320 IPIATAGNF-SMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVEL-----------FP--QYHLE 385 (465)
T ss_dssp HHHHHHTCS-CHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHHHHH-----------CG--GGTCC
T ss_pred HHHHHcCCc-hHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHHHHHH-----------CC--ccccc
Confidence 999888742 22233557789999999999999999999999999999999999874221 00 01245
Q ss_pred hhHHHHHhHHHhhhhhcCCchhHhHhHhhhcccccccchHHHHHHHHHHHHHHHHHH
Q psy13217 236 RRDLSVCGVAAGVSAGFGAPFGGIFLALEETTTFFSAEMLPRLVVGSFLAKFISDIL 292 (422)
Q Consensus 236 ~r~li~aGaAAGvAAaF~APIgGvlFalE~~~~~~~~~~l~~~~~as~iA~~v~~~l 292 (422)
...+..+||||-++++.|+|+++++..+|++.+ ++.+.|.++++++|+.+++.+
T Consensus 386 ~~~~alvGmaa~~a~v~raPlt~ivlv~Eltg~---~~~llpl~ia~~iA~~v~~~~ 439 (465)
T 1ots_A 386 AGTFAIAGMGALLAASIRAPLTGIILVLEMTDN---YQLILPMIITGLGATLLAQFT 439 (465)
T ss_dssp HHHHHHHHHTHHHHHTSCCHHHHHHHHHHHHCC---GGGHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999999999999999975 788899999999999999875
No 7
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=99.65 E-value=2.1e-15 Score=156.72 Aligned_cols=184 Identities=18% Similarity=0.221 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHhhHHHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy13217 77 AMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLGIACALCLFFAMEASGGNVSGV 156 (422)
Q Consensus 77 ~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~p~a~GsGipei 156 (422)
...+++|+++|+++.+|.....+.++++.+... .++. ..+.+++++.+.+ .++.|+..|.|.+.+
T Consensus 248 ~~~illGi~~Gl~g~lf~~~~~~~~~~~~~~~~--------~~~~------~~~~l~g~~~g~l-~~~~p~~~G~G~~~i 312 (466)
T 3nd0_A 248 WMFIILGILFGVMGYTFNRGLFKVLDWFDRLPP--------LATK------WKGFLLGSIIGIL-SLFPLPLTDGGDNAV 312 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCH--------HHHH------HHHHHHHHHHHHH-TTSSSSCSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--------ccHH------HHHHHHHHHHHHH-HHHHHHHcCCcHHHH
Confidence 357889999999999999999988887654311 1222 2455667777665 457899999999999
Q ss_pred HHHHhhccccccchHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHhhCCCCccccccccccccCChhhh
Q psy13217 157 MAYLNGSRIKKFFTIRTVLVKMCSTTAMMCTATPGGMEGPIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLNSVSER 236 (422)
Q Consensus 157 ~~~l~G~~~~~~l~~~~l~~K~i~~~lsv~sG~s~GrEGP~v~iGA~ig~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 236 (422)
+..++|.. +-..-...++.|++.+.+|+++|.++|...|++.+||++|..+++.+..+.+ ....+.
T Consensus 313 ~~~~~~~~-~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p-------------~~~~~~ 378 (466)
T 3nd0_A 313 LWAFNSQS-HFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLFP-------------SQIPEP 378 (466)
T ss_dssp HHHTTSCC-CHHHHHHHHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHHHHHHCT-------------TTCSST
T ss_pred HHHHcCCc-cHHHHHHHHHHHHHHHHHHHhCCCCCceehHHHHHHHHHHHHHHHHHHHhCC-------------ccccCH
Confidence 99888743 2122246789999999999999999999999999999999999988522100 013466
Q ss_pred hHHHHHhHHHhhhhhcCCchhHhHhHhhhcccccccchHHHHHHHHHHHHHHHHHH
Q psy13217 237 RDLSVCGVAAGVSAGFGAPFGGIFLALEETTTFFSAEMLPRLVVGSFLAKFISDIL 292 (422)
Q Consensus 237 r~li~aGaAAGvAAaF~APIgGvlFalE~~~~~~~~~~l~~~~~as~iA~~v~~~l 292 (422)
..+..+||||-++++.|+|++++++.+|++.+ ++.+.|.+++|++|+.+++.+
T Consensus 379 ~~~a~vGmaa~~a~v~~aPlt~ivlv~Eltg~---~~~~lpl~ia~~iA~~v~~~~ 431 (466)
T 3nd0_A 379 AVMAIAGMGALVAATVRAPLTAILLTIEMTDN---YFVILPLLVTCLVASVVAEAL 431 (466)
T ss_dssp HHHHHHTTSHHHHHHHSCHHHHHHHHHHTTCC---CTTHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHCC---hHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999986 778899999999999998875
No 8
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.36 E-value=1.3e-11 Score=132.76 Aligned_cols=182 Identities=14% Similarity=0.129 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHhhHHHHHHHHHHHHHHHHHhhhcCCC--CHHH
Q psy13217 78 MVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLGIACALCLFFAMEASGG--NVSG 155 (422)
Q Consensus 78 ~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~p~a~Gs--Gipe 155 (422)
..+++|+++|+++.+|..+..++.+++... + ....+|+ .+.+++++++. ...|...|. |...
T Consensus 237 ~~~~lGi~~Gl~g~~f~~~~~~~~~~~~~~--~----~~~~~~~-------~~~~~~~~~~~---l~~p~~~g~~~~~~~ 300 (632)
T 3org_A 237 LYAILGALMGVLGALFIRCVRSIYELRMRH--Y----PGTNRYF-------LVGVVALFASA---LQYPFRLFALDPRAT 300 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S----TTCCTHH-------HHHHHHHHHHH---HTTTC------CHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--h----cchhHHH-------HHHHHHHHHHH---HHHHHHhcCCcHHHH
Confidence 568999999999999999888877653221 0 0112332 33444444443 245665443 3455
Q ss_pred HHHHHhhccc-----ccc-chHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHhhCCCCccccccccccc
Q psy13217 156 VMAYLNGSRI-----KKF-FTIRTVLVKMCSTTAMMCTATPGGMEGPIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAY 229 (422)
Q Consensus 156 i~~~l~G~~~-----~~~-l~~~~l~~K~i~~~lsv~sG~s~GrEGP~v~iGA~ig~~l~~~~~~l~~~~~~~l~~~~~~ 229 (422)
++..+++... ..+ .-...++.|++.+++|.++|.++|...|+..+||++|..++..+..+
T Consensus 301 i~~l~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~s~g~g~pGGif~P~l~iGA~~G~~~g~~~~~~-------------- 366 (632)
T 3org_A 301 INDLFKAVPLYQTDHFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVV-------------- 366 (632)
T ss_dssp HHHHHSCC----------CCSSHHHHHHHHHHHHHTTSSSBCBCHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHcCCccccccchhHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHh--------------
Confidence 6665554210 011 12345789999999999999999999999999999999999884211
Q ss_pred cCChhhhhHHHHHhHHHhhhhhcCCchhHhHhHhhhcccccccchHHHHHHHHHHHHHHHHHHh
Q psy13217 230 LNSVSERRDLSVCGVAAGVSAGFGAPFGGIFLALEETTTFFSAEMLPRLVVGSFLAKFISDILE 293 (422)
Q Consensus 230 ~~~~~~~r~li~aGaAAGvAAaF~APIgGvlFalE~~~~~~~~~~l~~~~~as~iA~~v~~~l~ 293 (422)
+....+...+..+||||-+|++.+||++++ +.+|++.+ ++.+.|.+++|++|+.+++.++
T Consensus 367 ~p~~~~p~~~a~vGmaa~~~~v~~ap~t~v-i~~E~tg~---~~~~lpl~ia~~~a~~v~~~~~ 426 (632)
T 3org_A 367 FGNAIVPGSYAVVGAAAFTAGVTRALSCAV-IIFEVTGQ---IRHLVPVLISVLLAVIVGNAFN 426 (632)
T ss_dssp HCTTSCHHHHHHHHHHHHHHHHSCCTTHHH-HHHHHTCC---CSCSHHHHHHHHHHHHHHHHHC
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCC---hhHHHHHHHHHHHHHHHHHHhC
Confidence 111134568999999999999999999987 79999986 7788999999999999999874
No 9
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=24.60 E-value=30 Score=22.29 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=17.4
Q ss_pred hhhHHHHHhHHHhhhhhcCCchhH
Q psy13217 235 ERRDLSVCGVAAGVSAGFGAPFGG 258 (422)
Q Consensus 235 ~~r~li~aGaAAGvAAaF~APIgG 258 (422)
.||+|+-..++++-+++.+.|+.+
T Consensus 4 sRR~FLK~~aaa~Aaaaag~~~~~ 27 (35)
T 2pq4_B 4 SRRSFMKANAVAAAAAAAGLSVPG 27 (35)
T ss_dssp CSHHHHHHHHHHHHHHHHCCCCSS
T ss_pred cHHHHHHHHHHHHHHHHhcccchh
Confidence 588888877777777766766653
No 10
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=15.58 E-value=3.5e+02 Score=20.20 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy13217 68 LVGFYVLRWAMVVLTG-VMVGVIHFIMHAGVTFGSS 102 (422)
Q Consensus 68 ~~~~~~~~w~~~~liG-v~~Glva~~~~~~i~~~~~ 102 (422)
.-+++..+...+..+| +++|++++++......+++
T Consensus 29 Pdr~EF~~iak~~~iG~~imG~IGfiIkli~ipIn~ 64 (74)
T 1rh5_B 29 PTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKG 64 (74)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345666666666666 4578888887776555544
Done!