Query psy13217
Match_columns 422
No_of_seqs 336 out of 2096
Neff 6.8
Searched_HMMs 13730
Date Fri Aug 16 23:08:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13217.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13217hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1otsa_ f.20.1.1 (A:) Clc chlo 100.0 1.6E-37 1.1E-41 319.2 28.1 248 72-359 16-265 (444)
2 d1otsa_ f.20.1.1 (A:) Clc chlo 99.6 2.4E-15 1.8E-19 152.9 20.5 188 76-292 236-423 (444)
3 d1rh5b_ f.23.28.1 (B:) Preprot 12.3 1.9E+02 0.014 18.9 5.8 35 68-102 18-53 (56)
4 d2pila_ d.24.1.1 (A:) Pilin Gc 7.8 2.5E+02 0.018 20.1 5.2 26 73-98 4-29 (158)
5 d1u7ga_ f.44.1.1 (A:) Ammonium 3.8 3.4E+02 0.025 24.2 3.9 47 329-375 278-325 (383)
6 d1ci3m2 b.84.2.2 (M:170-231) C 3.6 73 0.0053 21.0 -0.9 15 250-264 1-15 (62)
7 d1okca_ f.42.1.1 (A:) ADP,ATP 3.3 7E+02 0.051 19.8 5.5 23 237-259 8-30 (292)
8 d1ciia1 f.1.1.1 (A:451-624) Co 3.1 5.5E+02 0.04 20.3 4.2 18 245-262 135-152 (174)
9 d1cmwa1 a.60.7.1 (A:174-289) 5 3.0 2.7E+02 0.02 19.9 1.9 30 20-49 13-42 (116)
10 d2axth1 f.23.33.1 (H:2-65) Pho 2.9 4E+02 0.029 17.6 2.4 25 75-99 23-47 (64)
No 1
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.6e-37 Score=319.16 Aligned_cols=248 Identities=19% Similarity=0.261 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHhhHHHHHHHHHHHHHHHHHhhhcCCC
Q psy13217 72 YVLRWAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLGIACALCLFFAMEASGG 151 (422)
Q Consensus 72 ~~~~w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~p~a~Gs 151 (422)
.+..+++++++|+++|+++.+++..++++++++++......+.. ...|..++ +.+.+.+.+++++++++.|.++|+
T Consensus 16 ~l~~~~la~liGi~~gl~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~l~~~~~p~~~Gs 91 (444)
T d1otsa_ 16 PLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNY-PLLLTVAF---LCSAVLAMFGYFLVRKYAPEAGGS 91 (444)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSH-HHHHHHHH---HHHHHHHHHHHHHHHHHCGGGSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cHHHHHHH---HHHHHHHHHHHHHHHhhCCccCCC
Confidence 45577789999999999999999999999999988754211111 11122222 456677888888889999999999
Q ss_pred CHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHhhCCCCccccccccccccC
Q psy13217 152 NVSGVMAYLNGSRIKKFFTIRTVLVKMCSTTAMMCTATPGGMEGPIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLN 231 (422)
Q Consensus 152 Gipei~~~l~G~~~~~~l~~~~l~~K~i~~~lsv~sG~s~GrEGP~v~iGA~ig~~l~~~~~~l~~~~~~~l~~~~~~~~ 231 (422)
|+||+++++||. ++.++.++.+.|++++++++++|+|+|||||++|+||++|+.++|+ +++ .
T Consensus 92 Gipev~~~l~~~--~~~~~~r~~~~k~~~~~~sl~~G~s~G~EGP~v~iga~i~~~l~~~---------~~~-------~ 153 (444)
T d1otsa_ 92 GIPEIEGALEDQ--RPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDI---------FRL-------K 153 (444)
T ss_dssp SHHHHHHHHTTC--SCCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHHH---------TTC-------C
T ss_pred CHHHHHHHHhCC--CCCccHHHHHHHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHH---------Hhh-------h
Confidence 999999999986 4567889999999999999999999999999999999999999998 342 3
Q ss_pred ChhhhhHHHHHhHHHhhhhhcCCchhHhHhHhhhccccccc--chHHHHHHHHHHHHHHHHHHhhhhhccccCccccccc
Q psy13217 232 SVSERRDLSVCGVAAGVSAGFGAPFGGIFLALEETTTFFSA--EMLPRLVVGSFLAKFISDILEQSFVESELEPGEMFYK 309 (422)
Q Consensus 232 ~~~~~r~li~aGaAAGvAAaF~APIgGvlFalE~~~~~~~~--~~l~~~~~as~iA~~v~~~l~~~~~~~~~~p~~~~~g 309 (422)
+++++|.+++||+|||+||+||||++|++|++|++.++++. ..++++++++++++++.+.. .+
T Consensus 154 ~~~~~r~l~~~GaaAglaa~F~aPlaG~lFa~E~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---------------~~ 218 (444)
T d1otsa_ 154 GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIF---------------NH 218 (444)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHHHHHHHHHH---------------SC
T ss_pred hHHhhHHHHHHHHHHHHhhccCCchhhhhhhhHHHhhcchHHHHHHHHHHhhhHHHhhheeec---------------cC
Confidence 67789999999999999999999999999999999987654 44889999999998888776 34
Q ss_pred cccccccccccCcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhC
Q psy13217 310 LVPHLRLAEVLTPENEQKGNYPIVTPDKKVIGDISRCLLYKLMASQVFDA 359 (422)
Q Consensus 310 ~~p~f~i~~~~~~~~~~~~~~~~~~~lGv~~Gl~g~lF~~~l~~~~~~~~ 359 (422)
..+.++++... +.+..+++.++++|++||++|.+|++.+.+.++++.
T Consensus 219 ~~~~~~~~~~~---~~~~~~~~~~~~lgi~~g~~g~~f~~~~~~~~~~~~ 265 (444)
T d1otsa_ 219 EVALIDVGKLS---DAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLH 265 (444)
T ss_dssp SCCSSCCCCCC---CCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445554432 236788999999999999999999999998888654
No 2
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=99.65 E-value=2.4e-15 Score=152.85 Aligned_cols=188 Identities=19% Similarity=0.271 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHhhHHHHHHHHHHHHHHHHHhhhcCCCCHHH
Q psy13217 76 WAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLGIACALCLFFAMEASGGNVSG 155 (422)
Q Consensus 76 w~~~~liGv~~Glva~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~l~~~~~p~a~GsGipe 155 (422)
+...+++|+++|+++.+|.....+++++..+... .++..+. +.+.+.+.+.+++ .++.|...|.|.+.
T Consensus 236 ~~~~~~lgi~~g~~g~~f~~~~~~~~~~~~~~~~--------~~~~~~~---l~~~~~~~l~~ll-~~~~p~~~g~G~~~ 303 (444)
T d1otsa_ 236 LWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHG--------GNITKWV---LMGGAIGGLCGLL-GFVAPATSGGGFNL 303 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------TCHHHHH---HHHHHHHHHHHHH-HHHCGGGSSCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------ccchhHH---HHHHHHHHHHHHH-hccCcccCCCchHH
Confidence 3456789999999999999999998887766532 1222222 2445555556654 56789999999999
Q ss_pred HHHHHhhccccccchHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHHHhhCCCCccccccccccccCChhh
Q psy13217 156 VMAYLNGSRIKKFFTIRTVLVKMCSTTAMMCTATPGGMEGPIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLNSVSE 235 (422)
Q Consensus 156 i~~~l~G~~~~~~l~~~~l~~K~i~~~lsv~sG~s~GrEGP~v~iGA~ig~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~ 235 (422)
++..+++.... ..-...++.|++.+.+|+++|.++|...|++.+||++|..+++....+. . ..+.+
T Consensus 304 ~~~~~~~~~~~-~~l~~~~~~K~~~t~~t~~~G~~GG~f~P~l~iGa~~G~~~~~~~~~~~-----------~--~~~~~ 369 (444)
T d1otsa_ 304 IPIATAGNFSM-GMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELF-----------P--QYHLE 369 (444)
T ss_dssp HHHHHHTCSCH-HHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHHHHHHC-----------G--GGTCC
T ss_pred HHHHhcCCcch-HHHHHHHHHHHHHHHHHhhcCCCCCeehHHHHHHHHHHHHHHHHHHHhC-----------C--cccCC
Confidence 99998875422 2224567789999999999999999999999999999999999842110 0 12346
Q ss_pred hhHHHHHhHHHhhhhhcCCchhHhHhHhhhcccccccchHHHHHHHHHHHHHHHHHH
Q psy13217 236 RRDLSVCGVAAGVSAGFGAPFGGIFLALEETTTFFSAEMLPRLVVGSFLAKFISDIL 292 (422)
Q Consensus 236 ~r~li~aGaAAGvAAaF~APIgGvlFalE~~~~~~~~~~l~~~~~as~iA~~v~~~l 292 (422)
...++.+||||.++++.|+|++++++.+|.+.+ ++.+.|.++++++|+.+++.+
T Consensus 370 ~~~~alvGmaa~~a~~~~~Plta~vl~~Eltg~---~~~~~p~~ia~~~a~~v~~~~ 423 (444)
T d1otsa_ 370 AGTFAIAGMGALLAASIRAPLTGIILVLEMTDN---YQLILPMIITGLGATLLAQFT 423 (444)
T ss_dssp HHHHHHHHHTHHHHHTSCCHHHHHHHHHHHHCC---GGGHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999999999999999985 788899999999999999875
No 3
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=12.29 E-value=1.9e+02 Score=18.89 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy13217 68 LVGFYVLRWAMVVLTGV-MVGVIHFIMHAGVTFGSS 102 (422)
Q Consensus 68 ~~~~~~~~w~~~~liGv-~~Glva~~~~~~i~~~~~ 102 (422)
.-+++..+...+..+|+ +.|++++++......+..
T Consensus 18 P~~~Ef~~ia~v~~iG~~i~G~IGf~I~li~~~i~~ 53 (56)
T d1rh5b_ 18 PTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKG 53 (56)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556677777777774 578888887776665544
No 4
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=7.81 E-value=2.5e+02 Score=20.11 Aligned_cols=26 Identities=8% Similarity=0.135 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13217 73 VLRWAMVVLTGVMVGVIHFIMHAGVT 98 (422)
Q Consensus 73 ~~~w~~~~liGv~~Glva~~~~~~i~ 98 (422)
++..+..++|||++++..-.+...++
T Consensus 4 IELlVViaIIgILaaia~P~~~~~~~ 29 (158)
T d2pila_ 4 IELMIVIAIVGILAAVALPAYQDYTA 29 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888999999988877765444
No 5
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=3.75 E-value=3.4e+02 Score=24.15 Aligned_cols=47 Identities=17% Similarity=-0.002 Sum_probs=29.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhCC-CCCcchhhhhHHHHH
Q psy13217 329 NYPIVTPDKKVIGDISRCLLYKLMASQVFDAP-QPFPEDGYSSLYKII 375 (422)
Q Consensus 329 ~~~~~~~lGv~~Gl~g~lF~~~l~~~~~~~~~-~~~p~~~~~gli~~~ 375 (422)
+-+-.+++|+++|++..+-.+.++...+++++ ...|-.+..|+.-.+
T Consensus 278 ~p~~A~~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l 325 (383)
T d1u7ga_ 278 GVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCI 325 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHHHHHHH
T ss_pred chhhHHHHHhhccHHHHHHHHHHHhhcccccccceEeehhhhHHHHHH
Confidence 33446788999999888777766544445555 345666655554433
No 6
>d1ci3m2 b.84.2.2 (M:170-231) Cytochrome f, small domain {Phormidium laminosum [TaxId: 32059]}
Probab=3.57 E-value=73 Score=21.04 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=9.4
Q ss_pred hhcCCchhHhHhHhh
Q psy13217 250 AGFGAPFGGIFLALE 264 (422)
Q Consensus 250 AaF~APIgGvlFalE 264 (422)
|+|+||++|.+=.+|
T Consensus 1 av~~A~~~G~V~~i~ 15 (62)
T d1ci3m2 1 AVYNASAAGVITAIA 15 (62)
T ss_dssp SCCBCSSCEEEEEEE
T ss_pred CeEeCccCEEEEEeE
Confidence 567777777764333
No 7
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]}
Probab=3.33 E-value=7e+02 Score=19.76 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=16.4
Q ss_pred hHHHHHhHHHhhhhhcCCchhHh
Q psy13217 237 RDLSVCGVAAGVSAGFGAPFGGI 259 (422)
Q Consensus 237 r~li~aGaAAGvAAaF~APIgGv 259 (422)
..+++.+.|+.++.++-.|+--+
T Consensus 8 ~~~laG~~a~~i~~~~~~Pld~i 30 (292)
T d1okca_ 8 KDFLAGGVAAAISKTAVAPIERV 30 (292)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Confidence 45667677777777888888644
No 8
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId: 562]}
Probab=3.12 E-value=5.5e+02 Score=20.27 Aligned_cols=18 Identities=28% Similarity=0.080 Sum_probs=10.9
Q ss_pred HHhhhhhcCCchhHhHhH
Q psy13217 245 AAGVSAGFGAPFGGIFLA 262 (422)
Q Consensus 245 AAGvAAaF~APIgGvlFa 262 (422)
+..+++..++|++-+=|+
T Consensus 135 a~~fs~~~g~~lgi~g~a 152 (174)
T d1ciia1 135 ALVFSILTGSALGIIGYG 152 (174)
T ss_dssp HHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHH
Confidence 344566667777655554
No 9
>d1cmwa1 a.60.7.1 (A:174-289) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]}
Probab=2.96 E-value=2.7e+02 Score=19.87 Aligned_cols=30 Identities=13% Similarity=0.343 Sum_probs=23.7
Q ss_pred cccccccCcccccCCCccccccccCccccc
Q psy13217 20 IEESDEDIPASKKFKSVYTVSLSDKFQTLD 49 (422)
Q Consensus 20 ~~~~~~~i~~~~~~~~~~~~d~~~~~esld 49 (422)
.-+++++||.++.--..+-..|..+|.++|
T Consensus 13 ~GD~sDnipGv~GiG~KtA~kll~~~gsle 42 (116)
T d1cmwa1 13 TGDESDNLPGVKGIGEKTARKLLEEWGSLE 42 (116)
T ss_dssp TCCSSSCCCCCCCSTTCTTTTTGGGGGTTC
T ss_pred hCccccCcccccccCchhHHHHHHhcchHH
Confidence 345677888888888888888888887776
No 10
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.87 E-value=4e+02 Score=17.57 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13217 75 RWAMVVLTGVMVGVIHFIMHAGVTF 99 (422)
Q Consensus 75 ~w~~~~liGv~~Glva~~~~~~i~~ 99 (422)
.|-...++|+..++.+.++.+.++.
T Consensus 23 GWGTTplMgv~m~Lf~vfl~iiLei 47 (64)
T d2axth1 23 GWGTTPLMAVFMGLFLVFLLIILEI 47 (64)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCccHHHHHHHHHHHHHHHHHHHH
Confidence 5666788999999998887776553
Done!