RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13217
(422 letters)
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
merolae}
Length = 632
Score = 138 bits (349), Expect = 8e-36
Identities = 39/224 (17%), Positives = 85/224 (37%), Gaps = 21/224 (9%)
Query: 72 YVLR-WAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFN 130
Y+LR + L GV + F + V L+++ + + Y+
Sbjct: 6 YLLRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKISRLA------GRFAGYILYVVSG 59
Query: 131 MIFLGIACALCLFFAMEASGGNVSGVMAYLNG--SRIKKFFTIRTVLVKMCSTTAMMCTA 188
+ ++ C + EA G + + + L+G +++ +R + K +
Sbjct: 60 VALCLLSTFWCAVLSTEAEGSGLPQMKSILSGFYDKMRSALELRVLFAKALGLICAIGGG 119
Query: 189 TPGGMEGPIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLNSVSERRDLSVCGVAAGV 248
P G EGP +HI + + +L + + + R A G+
Sbjct: 120 LPVGWEGPNVHIACIIAHQ----FYRLGVFKELC--------TDRALRLQTLAAACAVGL 167
Query: 249 SAGFGAPFGGIFLALEETTTFFSAEMLPRLVVGSFLAKFISDIL 292
++ FGAP GG+ ++E +F+ + + V+ + + ++L
Sbjct: 168 ASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYELL 211
Score = 41.7 bits (98), Expect = 4e-04
Identities = 54/414 (13%), Positives = 117/414 (28%), Gaps = 85/414 (20%)
Query: 66 SSLVGFYVLRWAMVVLTGVMVGVIHFIMHA------------GVTFG--SSLKVQWLEVI 111
S+L G V +F G G +L ++ + I
Sbjct: 200 SALSGAIVYELLYTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSI 259
Query: 112 TDGFPQDVWRTYLGLAGFNMIFLGIACALCLFFAMEASGGNVSGVMAYLNGSRIKK---- 167
+ R Y G + ++ + A L + + + L +
Sbjct: 260 YELRM----RHYPGTNRYFLVGVVALFASALQYPFRLFALDPRATINDLFKAVPLYQTDH 315
Query: 168 --------FFTIRTVLVKMCSTTAMMCTATPGGMEGPIIHIGAAVGNIAPIVIAKLPLPT 219
I+ +LV + + P G+ P IGA G + ++ +
Sbjct: 316 FGWTELILMPIIKFILVALSIGLPL-----PAGVFVPSFLIGAGFGRLYGELMRVV---- 366
Query: 220 KFRTAPSLAYLNSVSERRDLSVCGVAAGVSAGFGAPFGGIFLALEETTTFFSAEMLPRLV 279
+ S +V G AA +AG + E T ++P ++
Sbjct: 367 ----FGNAIVPGSY------AVVG-AAAFTAGVTRALSCAVIIFEVTGQI--RHLVP-VL 412
Query: 280 VGSFLAKFISDILEQSFVESELE----------PGEMFYKL-----------VPHLR--- 315
+ LA + + +S E+ + + ++ PHL
Sbjct: 413 ISVLLAVIVGNAFNRSLYETLVLMKHLPYMPILRRDRSPEMTAREIMHPIEGEPHLFPDS 472
Query: 316 ----LAEVLTPENEQKGNYPIVTPDKKVIGDISRCLLYKLMASQVFDAPQPFPEDGYSSL 371
+ +L + +P++ + ++G ISR + + + D P+P L
Sbjct: 473 EPQHIKGILEKFPNRLV-FPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVL 531
Query: 372 Y---KIIFTKDCSIEYLQQVRQDMLLNVSEDDKDKLLDLSPFMNKNLFFVRRKT 422
+ + ++ + + L + + V +
Sbjct: 532 LDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYS 585
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel,
FAB complex, membrane protein; 2.51A {Escherichia coli}
SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A
2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A
2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Length = 465
Score = 95.5 bits (238), Expect = 2e-21
Identities = 48/219 (21%), Positives = 79/219 (36%), Gaps = 24/219 (10%)
Query: 76 WAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLG 135
M + G +VG+ GV + + ++ L D +P + +L A +
Sbjct: 36 LFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSA----VLAM 91
Query: 136 IACALCLFFAMEASGGNVSGVMAYLNGSRIKKFFTIRTVLVKMCSTTAMMCTATPGGMEG 195
L +A EA G + + L R R + VK + G EG
Sbjct: 92 FGYFLVRKYAPEAGGSGIPEIEGALEDQR--PVRWWRVLPVKFFGGLGTLGGGMVLGREG 149
Query: 196 PIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLNSVSERRDLSVCGVAAGVSAGFGAP 255
P + IG +G + + + FR L R L G AAG++A F AP
Sbjct: 150 PTVQIGGNIGRM----VLDI-----FR-------LKGDEARHTLLATGAAAGLAAAFNAP 193
Query: 256 FGGIFLALEETTTFFSAEM--LPRLVVGSFLAKFISDIL 292
GI +EE F + + + +G ++ + I
Sbjct: 194 LAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIF 232
Score = 55.1 bits (133), Expect = 2e-08
Identities = 35/229 (15%), Positives = 80/229 (34%), Gaps = 32/229 (13%)
Query: 76 WAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLG 135
+ ++ G++ G+ G F + ++ + ++ + G +G
Sbjct: 252 LWLYLILGIIFGI------FGPIFNKWV--LGMQDLLHRVHGGNITKWVLMGGA----IG 299
Query: 136 IACALCLFFAMEASGGNVSGVMAYLNGSRIKKFFTIRTVLVKMCSTTAMMCTATPGGMEG 195
C L F A SGG + + G+ + ++ +T + PGG+
Sbjct: 300 GLCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLVF-IFVARVITTLLCFSSGAPGGIFA 358
Query: 196 PIIHIGAAVGNI-APIVIAKLPLPTKFRTAPSLAYLNSVSERRDLSVCGVAAGVSAGFGA 254
P++ +G +G + + P ++ G+ A ++A A
Sbjct: 359 PMLALGTVLGTAFGMVAVELFPQYHLEAGT--------------FAIAGMGALLAASIRA 404
Query: 255 PFGGIFLALEETTTFFSAEMLPRLVVGSFLAKFISDILE-QSFVESELE 302
P GI L LE T + +++ +++ A ++ + + L
Sbjct: 405 PLTGIILVLEMTDNY---QLILPMIITGLGATLLAQFTGGKPLYSAILA 450
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog,
transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Length = 466
Score = 93.2 bits (232), Expect = 8e-21
Identities = 43/219 (19%), Positives = 79/219 (36%), Gaps = 25/219 (11%)
Query: 76 WAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLG 135
++ G++ GV+ + V QW + +L A + +
Sbjct: 32 LVAAIVVGLITGVLGAGFKSAVNNML----QWRSQLAQILAPIPPLAWLVTALISGGMVA 87
Query: 136 IACALCLFFAMEASGGNVSGVMAYLNGSRIKKFFTIRTVLVKMCSTTAMMCTATPGGMEG 195
++ L FA + SG + + +L G R + +K+ + G EG
Sbjct: 88 LSFWLMKRFAPDTSGSGIPQIEGHLEGKL--PLVWQRVLPIKLVGGFLSLGAGMLAGFEG 145
Query: 196 PIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLNSVSERRDLSVCGVAAGVSAGFGAP 255
P I +G ++G + F+ + +R L G AG++ F AP
Sbjct: 146 PTIQMGGSIGQM----TGGW-----FKA--------TQENQRILIAVGAGAGLATAFNAP 188
Query: 256 FGGIFLALEETTTFFSAEML--PRLVVGSFLAKFISDIL 292
G+ L EE F ++ L L+ G +A I ++
Sbjct: 189 LAGVALIGEEMHPRFRSQTLAYHSLLFGCVMATIILRMI 227
Score = 54.7 bits (132), Expect = 3e-08
Identities = 40/229 (17%), Positives = 75/229 (32%), Gaps = 35/229 (15%)
Query: 76 WAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLG 135
M ++ G++ GV+ G TF L + D P + + G G
Sbjct: 247 LWMFIILGILFGVM------GYTFNRGL--FKVLDWFDRLPP-LATKWKGFLL------G 291
Query: 136 IACALCLFFAMEASGGNVSGVMAYLNGSRIKKFFTIRTVLVKMCSTTAMMCTATPGGMEG 195
+ F + + G + V+ N + + T + GG+
Sbjct: 292 SIIGILSLFPLPLTDGGDNAVLWAFNSQSHFSTLIL-VFCGRFLLTLICYGSGAIGGIFA 350
Query: 196 PIIHIGAAVGNI-APIVIAKLPLPTKFRTAPSLAYLNSVSERRDLSVCGVAAGVSAGFGA 254
P++ I + V A P +++ G+ A V+A A
Sbjct: 351 PMLGIASIVSVAMARHFHLLFPSQIPEPAV--------------MAIAGMGALVAATVRA 396
Query: 255 PFGGIFLALEETTTFFSAEMLPRLVVGSFLAKFISDILE-QSFVESELE 302
P I L +E T + ++ L+V +A +++ L + LE
Sbjct: 397 PLTAILLTIEMTDNY---FVILPLLVTCLVASVVAEALGGKPIYTVLLE 442
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.5 bits (143), Expect = 1e-09
Identities = 56/355 (15%), Positives = 106/355 (29%), Gaps = 99/355 (27%)
Query: 125 GLAGFNMIFLG---IACALCLFFAME-ASGGNVSGVMAYLNGSRIKKFFTIRTVLVKMCS 180
G+ G G +A +CL + ++ + +LN T+ +L K+
Sbjct: 157 GVLGS-----GKTWVALDVCLSYKVQCKMDFKI----FWLNLKNCNSPETVLEMLQKLLY 207
Query: 181 TTAMMCTATPGGMEGPIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLNSVSERRDLS 240
T+ + I + + ++ +K P L L +V + +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYEN------CLLVLLNVQNAKAWN 260
Query: 241 V----C---------GVAAGVSAGFGAPFGGIF----LALEETTTFFS------AEMLPR 277
C V +SA L +E + + LPR
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 278 LVVG------SFLAKFISD------------------ILEQSFVESELEPGEM---FYKL 310
V+ S +A+ I D I+E S + LEP E F +L
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL--NVLEPAEYRKMFDRL 378
Query: 311 VPHLRLAEVLTPENEQKGNYPIVT-------PDKKVIGDI-SRCLLYKLMASQVFDAPQP 362
V P + + P + K + + ++ Y L+ Q
Sbjct: 379 S-------VF-PPSA---HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ------- 420
Query: 363 FPEDGYSSLYKIIFTKDCSIEYLQQVRQDMLLNVSEDDKDKLLDLSPFMNKNLFF 417
P++ S+ I +E + + ++ + + DL P F+
Sbjct: 421 -PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Score = 35.2 bits (80), Expect = 0.041
Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 26/144 (18%)
Query: 280 VGSFLAKFISDILEQSFVESELEPGEMFYKLVPH-----LRLAEVLTPENEQKGNYPIVT 334
V +F K + D+ + + E++ + + LRL L + E+ +V
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEID--HII--MSKDAVSGTLRLFWTLLSKQEE-----MV- 79
Query: 335 PDKKVIGDISRCLLYKLMASQVFDAP-QP-FPEDGYSSLYKIIFTKDCSIEYLQQVRQDM 392
+K + ++ R + YK + S + QP Y ++ + R
Sbjct: 80 --QKFVEEVLR-INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 393 LLNVSEDDKDKLLDLSPFMNKNLF 416
L + + LL+L P KN+
Sbjct: 137 YLKL----RQALLELRP--AKNVL 154
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.005
Identities = 25/151 (16%), Positives = 56/151 (37%), Gaps = 34/151 (22%)
Query: 260 FLA-LEETTTFFSAEMLPRLVVGSFLAKFISDILEQSFVESELEPGEMFYKLVPHLRLAE 318
F L E T F+A+ P + KF+ +V S +EP + + ++
Sbjct: 37 FNKILPEPTEGFAADDEPTTPA-ELVGKFLG------YVSSLVEPSK----VGQFDQVLN 85
Query: 319 VLTPENEQ---KGN------YPIVTPDKKVIGDISRCLLYKLMASQVFDAPQPFPEDGYS 369
+ E E +GN ++ + + + + A + A +PF + S
Sbjct: 86 LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM--AKRPFDKKSNS 143
Query: 370 SLYKIIFTKDCSI-----------EYLQQVR 389
+L++ + + + +Y +++R
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEELR 174
Score = 35.4 bits (81), Expect = 0.036
Identities = 76/466 (16%), Positives = 136/466 (29%), Gaps = 159/466 (34%)
Query: 21 EESDEDIPASKKFKSVYTVSLSDKFQTLDF---SVKQSKLSNYFQGGQSSLVGF---YVL 74
+ +D P + L KF L + V+ SK+ + Q L F Y
Sbjct: 47 GFAADDEPTTP-------AELVGKF--LGYVSSLVEPSKVGQFDQVLNLCLTEFENCY-- 95
Query: 75 RWAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFL 134
L G IH + L + T +++ + Y+
Sbjct: 96 ------LEG---NDIH-------ALAAKLLQE--NDTTLVKTKELIKNYIT--------- 128
Query: 135 GIACALC-----------LFFAMEASGGNVSGVMAYLNG-SRIKKFFT-IRTVLVKMCST 181
A + LF A GN ++A G +F +R +
Sbjct: 129 --ARIMAKRPFDKKSNSALFRA--VGEGNAQ-LVAIFGGQGNTDDYFEELRDL------- 176
Query: 182 TAMMCTATPGGMEGPIIHIGAAVGNIAPIVIAKLPLPTKFR-------------TAPSLA 228
T + G +I A ++ ++ L F P
Sbjct: 177 -----YQTYHVLVGDLIKFSAET--LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 229 YLNSVSERRDLS---------VCGVAAGVSAGFGAPFGGIFLALEETTTFFSAEMLPRLV 279
YL S+ +S V GF P G + + T S LV
Sbjct: 230 YLLSIP----ISCPLIGVIQLAHYVVTAKLLGF-TP--GELRSYLKGATGHSQG----LV 278
Query: 280 VGSFLAKFISDILEQSFVESELEPGE-MFY------KLVPHLRLAEVLTPENEQKGN-YP 331
+A+ S +SF S + +F+ + P+ L + ++ + P
Sbjct: 279 TAVAIAETDS---WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 332 IVTP--------DKKVIGDISRCLLYKLMASQV----FDAPQPF-----PEDGYSSLYKI 374
+P ++V +++ + QV + + P+ SLY +
Sbjct: 336 --SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ----SLYGL 389
Query: 375 IFTKDCSIEYLQQVRQDMLLNVSEDDKDKLLDLSPFMNKNLFFVRR 420
T L++ + S D+ ++ PF + L F R
Sbjct: 390 NLT-------LRKAKAP-----SGLDQSRI----PFSERKLKFSNR 419
Score = 34.6 bits (79), Expect = 0.066
Identities = 65/350 (18%), Positives = 105/350 (30%), Gaps = 102/350 (29%)
Query: 99 FGSSLK---VQWLEVITDGFPQD-VWRTYLGLAGFNMIFLGIACALCLFFAMEASGGNVS 154
S L+ + L T+GF D T L G FLG + + V
Sbjct: 29 IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK---FLG-------YVSSLVEPSKVG 78
Query: 155 GVMAYLNGSRIKKFFT-------IRTVLVKMCSTTAMMCTATPGGMEGPIIHIGAAVGN- 206
LN + +F I + K+ + ++ + N
Sbjct: 79 QFDQVLNLC-LTEFENCYLEGNDIHALAAKL-----------LQENDTTLVKTKELIKNY 126
Query: 207 IAPIVIAKLPLPTKFRTAPSLAYLNSVSERRDLSVCGVAAGVSAGFGAPFGG---IFLAL 263
I ++AK P + + S A +V E +A A FGG
Sbjct: 127 ITARIMAKRPFD---KKSNS-ALFRAVGEG------------NAQLVAIFGGQGNTDDYF 170
Query: 264 EETTTFFSAEMLPRLVVGSFLAKFISDILEQSFVESELEPGEMFYKLVPH-LRLAEVLTP 322
EE + ++VG + KF ++ L + + L+ ++F L + E L
Sbjct: 171 EELRDLYQT---YHVLVGDLI-KFSAETL-SELIRTTLDAEKVF----TQGLNILEWLE- 220
Query: 323 ENEQKGNYPIVTPDKKVIGDISRCLLYKLMASQVFDAPQPFPEDGYSSL--YKIIFTKDC 380
P TPDK Y + S P P G L Y ++ K
Sbjct: 221 -------NPSNTPDKD----------Y--LLS----IPISCPLIGVIQLAHY-VVTAKLL 256
Query: 381 SI---EYLQQVR------QDMLLNV---SEDDKDKLLDLSPFMNKNLFFV 418
E ++ Q ++ V D + LFF+
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI 306
Score = 30.0 bits (67), Expect = 1.9
Identities = 39/241 (16%), Positives = 67/241 (27%), Gaps = 101/241 (41%)
Query: 11 EIPHKSLINIEESDEDI--------PASKKFKSVYTVSLSDKFQTLDFSVKQSK----LS 58
EI S S++ + PA + + + F+ L +SK
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQFTQPA------LTLMEKA-AFEDL-----KSKGLIPAD 1756
Query: 59 NYFQGGQSSLVGFYVLRWAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQD 118
F G SL G Y A+ L VM + S ++V
Sbjct: 1757 ATFAG--HSL-GEYA---ALASLADVM------------SIESLVEV------------- 1785
Query: 119 VWRTYLGLAGFNMIFL-GIACALCLFFAMEA-SGGNVSGVMAYLNGSRIKKFFT---IRT 173
+F G+ A+ G + M +N R+ F+ ++
Sbjct: 1786 -------------VFYRGMTMQ----VAVPRDELGRSNYGMIAINPGRVAASFSQEALQY 1828
Query: 174 VLVKMCSTTAMMCTA----TPG------GMEGPIIHIGA--AVGNIA------PIVIAKL 215
V+ ++ T + G + A V N+ I I +L
Sbjct: 1829 VVERVGKRTGWLVEIVNYNVENQQYVAAG------DLRALDTVTNVLNFIKLQKIDIIEL 1882
Query: 216 P 216
Sbjct: 1883 Q 1883
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.63
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 4/22 (18%)
Query: 214 KLPLPTKFRTAPSLAYLNSVSE 235
KL +AP+LA + + E
Sbjct: 30 KLYADD---SAPALA-IKATME 47
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G
consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB:
2hvg_A
Length = 465
Score = 29.5 bits (66), Expect = 2.4
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 365 EDGYSSLYKIIFTKDCSIEYLQQVRQDMLLNVSEDDKDKLLDLSP 409
D Y L + K + +Q+ + + +D D+LL+L+P
Sbjct: 399 VDAYEELKQFTRGKVIDQKIMQEFIKTKCAFLPQDVVDQLLELTP 443
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for
structural genomics of infec diseases, NADE, CSGI; 2.74A
{Campylobacter jejuni}
Length = 249
Score = 28.7 bits (65), Expect = 3.7
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 121 RTYLGLAGFNMIFL----GIACALCLFFAMEASGGNVSGVM 157
+ + + + L GI AL A NV ++
Sbjct: 18 QEKVKNSQSQGVVLGLSGGIDSALVATLCKRALKENVFALL 58
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- cell division, DNA translocation,
KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 28.5 bits (64), Expect = 5.5
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 1 MSVLSMSGESEIPHKSLINIEESDEDIPASKKFKSVYTVSLSDKFQTLDFSVKQSKLS 58
++V+S+ IP K+ + IE IP + V S+ + ++ +S +
Sbjct: 147 LAVISVRVVEVIPGKTTVGIE-----IPNEDR----QMVRFSEVLSSPEYDEHKSTVP 195
>3u40_A Pnpase, purine nucleoside phosphorylase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: ADN; 2.05A {Entamoeba histolytica}
PDB: 3tl6_A*
Length = 242
Score = 27.5 bits (61), Expect = 8.2
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 190 PGGM--EGPIIHIGAAVGNIAPIVI 212
PG M P H GA G IA V+
Sbjct: 2 PGSMAEHCPTPHNGAKYGEIAETVL 26
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- binding, cell division, transmembrane,
inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB:
2j5p_A*
Length = 512
Score = 27.6 bits (62), Expect = 8.8
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 9/58 (15%)
Query: 1 MSVLSMSGESEIPHKSLINIEESDEDIPASKKFKSVYTVSLSDKFQTLDFSVKQSKLS 58
+S +++ IP K + +E +P K+ TV L + F S L+
Sbjct: 100 LSTVAVRVVEVIPGKPYVGLE-----LPNKKR----QTVYLREVLDNAKFRDNPSPLT 148
>4epp_A Poly(ADP-ribose) glycohydrolase; marco domain, PAR; HET: APR; 1.95A
{Tetrahymena thermophila} PDB: 4epq_A*
Length = 477
Score = 27.6 bits (60), Expect = 9.4
Identities = 13/108 (12%), Positives = 30/108 (27%), Gaps = 5/108 (4%)
Query: 273 EMLPRLVVGSFLAKFISDILEQSFVE-SELEPGEMFYKLVPHL-RLAEVLTPENEQKGNY 330
+L L L+ F + + E + +P + +L + + + K
Sbjct: 72 SILEILRDSKNQNDEKYFNLKAVFEQLDKEEQTYFLEQFIPKICQLVLKI-KKKQLKNQI 130
Query: 331 PIVTPDKKVIGDISRCLLYKLMASQVFDAPQPFPEDGYSSLYKIIFTK 378
P + + SR + ++ + Y I
Sbjct: 131 PKESKIYEA--AFSREEISYYVSCMFLCILKDQDRKIYKDFRLIYLKD 176
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.404
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,383,778
Number of extensions: 386050
Number of successful extensions: 734
Number of sequences better than 10.0: 1
Number of HSP's gapped: 720
Number of HSP's successfully gapped: 31
Length of query: 422
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 326
Effective length of database: 4,021,377
Effective search space: 1310968902
Effective search space used: 1310968902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.2 bits)