RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13217
         (422 letters)



>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli
           [TaxId: 562]}
          Length = 444

 Score = 77.2 bits (189), Expect = 6e-16
 Identities = 44/201 (21%), Positives = 72/201 (35%), Gaps = 22/201 (10%)

Query: 76  WAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLG 135
             M  + G +VG+       GV +  + ++  L    D +P  +   +L  A    +   
Sbjct: 20  LFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSA----VLAM 75

Query: 136 IACALCLFFAMEASGGNVSGVMAYLNGSRIKKFFTIRTVLVKMCSTTAMMCTATPGGMEG 195
               L   +A EA G  +  +   L   R  +++  R + VK       +      G EG
Sbjct: 76  FGYFLVRKYAPEAGGSGIPEIEGALEDQRPVRWW--RVLPVKFFGGLGTLGGGMVLGREG 133

Query: 196 PIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLNSVSERRDLSVCGVAAGVSAGFGAP 255
           P + IG  +G +                   +  L     R  L   G AAG++A F AP
Sbjct: 134 PTVQIGGNIGRM----------------VLDIFRLKGDEARHTLLATGAAAGLAAAFNAP 177

Query: 256 FGGIFLALEETTTFFSAEMLP 276
             GI   +EE    F   ++ 
Sbjct: 178 LAGILFIIEEMRPQFRYTLIS 198



 Score = 46.4 bits (109), Expect = 4e-06
 Identities = 38/228 (16%), Positives = 83/228 (36%), Gaps = 30/228 (13%)

Query: 76  WAMVVLTGVMVGVIHFIMHAGVTFGSSLKVQWLEVITDGFPQDVWRTYLGLAGFNMIFLG 135
             + ++ G++ G+   I +  V          ++ +           ++ + G       
Sbjct: 236 LWLYLILGIIFGIFGPIFNKWV--------LGMQDLLHRVHGGNITKWVLMGGAIGGL-- 285

Query: 136 IACALCLFFAMEASGGNVSGVMAYLNGSRIKKFFTIRTVLVKMCSTTAMMCTATPGGMEG 195
             C L  F A   SGG  + +     G+       +   + ++ +T     +  PGG+  
Sbjct: 286 --CGLLGFVAPATSGGGFNLIPIATAGNFSM-GMLVFIFVARVITTLLCFSSGAPGGIFA 342

Query: 196 PIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLNSVSERRDLSVCGVAAGVSAGFGAP 255
           P++ +G  +G    +V  +L  P     A + A            + G+ A ++A   AP
Sbjct: 343 PMLALGTVLGTAFGMVAVEL-FPQYHLEAGTFA------------IAGMGALLAASIRAP 389

Query: 256 FGGIFLALEETTTFFSAEMLPRLVVGSFLAKFISDILE-QSFVESELE 302
             GI L LE T  +   +++  +++    A  ++     +    + L 
Sbjct: 390 LTGIILVLEMTDNY---QLILPMIITGLGATLLAQFTGGKPLYSAILA 434


>d2axtc1 f.55.1.1 (C:27-473) Photosystem II CP43 protein PsbC
           {Thermosynechococcus elongatus [TaxId: 146786]}
          Length = 447

 Score = 30.5 bits (69), Expect = 0.41
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 86  VGVIHFIMHAGVTFGSSL--KVQWLEVITDGFPQD--VWRTYLGLA---GFNMIFLGIAC 138
           VGV+H I  + V     +   ++  E + +        W+    +    GF++I LGI  
Sbjct: 88  VGVVHLIS-SAVLGFGGVYHAIRGPETLEEYSSFFGYDWKDKNKMTTILGFHLIVLGIGA 146

Query: 139 ALCLFFAM 146
            L +  AM
Sbjct: 147 LLLVAKAM 154


>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId:
           82367]}
          Length = 123

 Score = 27.8 bits (61), Expect = 1.0
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 181 TTAMMCTATPG-GMEGPIIHIGAAVGNIAPIVIAKLPLPTKFRTAPSLAYLN 231
              + CT   G GM G ++ +G A  N+     AK+P   + R    LA +N
Sbjct: 73  LYGVKCTPHFGMGMVG-LVQVGDAPENLDAAKTAKMPKKARERMDAELAQVN 123


>d1hmsa_ b.60.1.2 (A:) Muscle fatty acid binding protein (m-fabp)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 131

 Score = 27.1 bits (60), Expect = 1.9
 Identities = 9/45 (20%), Positives = 17/45 (37%)

Query: 21  EESDEDIPASKKFKSVYTVSLSDKFQTLDFSVKQSKLSNYFQGGQ 65
            E DE     +K KS+ T+          +  +++ L      G+
Sbjct: 68  VEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGK 112


>d2hnxa1 b.60.1.2 (A:1-131) Adipocyte lipid-binding protein, ALBP
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 131

 Score = 26.8 bits (59), Expect = 3.1
 Identities = 8/45 (17%), Positives = 16/45 (35%)

Query: 21  EESDEDIPASKKFKSVYTVSLSDKFQTLDFSVKQSKLSNYFQGGQ 65
           +E DE     +K KS  T+          +  K + +    +  +
Sbjct: 68  QEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDK 112


>d1rqba1 a.5.7.2 (A:307-474) Transcarboxylase 5S subunit, C-terminal
           domain {Propionibacterium freudenreichii shermanii
           [TaxId: 1752]}
          Length = 168

 Score = 26.0 bits (57), Expect = 6.6
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 14/70 (20%)

Query: 303 PGEMFYKLVPHL-------RLAEVLT--PE-NEQKGNYPIVTPDKKVIGDISRCL----L 348
           PG M   +   L       ++ EV+   P   +  G  P+VTP  +++G  +        
Sbjct: 2   PGGMLSNMESQLRAQGAEDKMDEVMAEVPRVRKAAGFPPLVTPSSQIVGTQAVFNVMMGE 61

Query: 349 YKLMASQVFD 358
           YK M  +  D
Sbjct: 62  YKRMTGEFAD 71


>d2f5tx2 d.136.1.5 (X:110-246) Transcriptional regulator TrmB
           {Thermococcus litoralis [TaxId: 2265]}
          Length = 137

 Score = 25.7 bits (56), Expect = 7.0
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 9/69 (13%)

Query: 358 DAPQPFPEDGYSSLYKIIFTKDCSIEYLQQVRQDMLLNVSEDDK------DKLLDLSPFM 411
           +A + F E  YS+  ++I       E+ + +R+D L+   E         DK+ DLS F 
Sbjct: 10  EAIEMFRESLYSAKNEVIVVTPS--EFFETIRED-LIKTLERGVTVSLYIDKIPDLSEFK 66

Query: 412 NKNLFFVRR 420
            K  FFVR+
Sbjct: 67  GKGNFFVRQ 75


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0611    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,531,466
Number of extensions: 70422
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 13
Length of query: 422
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 334
Effective length of database: 1,199,356
Effective search space: 400584904
Effective search space used: 400584904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)