BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13219
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1
Length = 392
Score = 164 bits (414), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 117/192 (60%), Gaps = 6/192 (3%)
Query: 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
M+RNV + D +VLG R P+ + +AMQ++AH DGE+AT RA + M+LS +T
Sbjct: 75 MLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWAT 134
Query: 61 TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
+S+EEV P WLQ+YI+KDR ++ ++V++AE+ GY AI +T+DT LG+R D++
Sbjct: 135 SSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVR 194
Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
N+F +PP L + NF F D SGL YVA D S+ W+D++ L
Sbjct: 195 NRFKLPPQLRMKNFETSTLSFSPEENFGD------DSGLAAYVAKAIDPSISWEDIKWLR 248
Query: 181 QATKLPIVCKGI 192
+ T LPIV KGI
Sbjct: 249 RLTSLPIVAKGI 260
>pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|B Chain B, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|C Chain C, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|D Chain D, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate
Length = 370
Score = 163 bits (413), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 117/192 (60%), Gaps = 6/192 (3%)
Query: 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
M+RNV + D +VLG R P+ + +AMQ++AH DGE+AT RA + M+LS +T
Sbjct: 53 MLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWAT 112
Query: 61 TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
+S+EEV P WLQ+YI+KDR ++ ++V++AE+ GY AI +T+DT LG+R D++
Sbjct: 113 SSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVR 172
Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
N+F +PP L + NF F D SGL YVA D S+ W+D++ L
Sbjct: 173 NRFKLPPQLRMKNFETSTLSFSPEENFGD------DSGLAAYVAKAIDPSISWEDIKWLR 226
Query: 181 QATKLPIVCKGI 192
+ T LPIV KGI
Sbjct: 227 RLTSLPIVAKGI 238
>pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In
Complex With Cdst
pdb|2RDU|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Glyoxylate
pdb|2RDW|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Sulfate
Length = 387
Score = 163 bits (413), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 117/192 (60%), Gaps = 6/192 (3%)
Query: 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
M+RNV + D +VLG R P+ + +AMQ++AH DGE+AT RA + M+LS +T
Sbjct: 70 MLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWAT 129
Query: 61 TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
+S+EEV P WLQ+YI+KDR ++ ++V++AE+ GY AI +T+DT LG+R D++
Sbjct: 130 SSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVR 189
Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
N+F +PP L + NF F D SGL YVA D S+ W+D++ L
Sbjct: 190 NRFKLPPQLRMKNFETSTLSFSPEENFGD------DSGLAAYVAKAIDPSISWEDIKWLR 243
Query: 181 QATKLPIVCKGI 192
+ T LPIV KGI
Sbjct: 244 RLTSLPIVAKGI 255
>pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And
Substrate Specificity Of Glycolate Oxidase
pdb|1GYL|B Chain B, Involvement Of Tyr24 And Trp108 In Substrate Binding And
Substrate Specificity Of Glycolate Oxidase
Length = 369
Score = 149 bits (377), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 119/192 (61%), Gaps = 10/192 (5%)
Query: 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
++ +V + D T+LG + P+ IAP+AMQK+AH +GE ATARAA IM LS +T
Sbjct: 51 ILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWAT 110
Query: 61 TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
+S+EEV + P + Q+Y++KDR + Q+V+RAER+G+ AI +T+DT LG R D+K
Sbjct: 111 SSVEEVASTGPGIRFF-QLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIK 169
Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
N+F +PP+L+L NF + D + SGL+ YVA Q D S+ W DV L
Sbjct: 170 NRFVLPPFLTLKNFEGIDLGKMD---------KANDSGLSSYVAGQIDRSLSWKDVAWLQ 220
Query: 181 QATKLPIVCKGI 192
T LPI+ KG+
Sbjct: 221 TITSLPILVKGV 232
>pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2
Angstroms Resolution
Length = 370
Score = 149 bits (376), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 119/192 (61%), Gaps = 10/192 (5%)
Query: 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
++ +V + D T+LG + P+ IAP+AMQK+AH +GE ATARAA IM LS +T
Sbjct: 52 ILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWAT 111
Query: 61 TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
+S+EEV + P + Q+Y++KDR + Q+V+RAER+G+ AI +T+DT LG R D+K
Sbjct: 112 SSVEEVASTGPGIRFF-QLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIK 170
Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
N+F +PP+L+L NF + D + SGL+ YVA Q D S+ W DV L
Sbjct: 171 NRFVLPPFLTLKNFEGIDLGKMD---------KANDSGLSSYVAGQIDRSLSWKDVAWLQ 221
Query: 181 QATKLPIVCKGI 192
T LPI+ KG+
Sbjct: 222 TITSLPILVKGV 233
>pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With
Bound Active- Site Inhibitors
pdb|1AL8|A Chain A, Three-Dimensional Structure Of Glycolate Oxidase With
Bound Active- Site Inhibitors
Length = 359
Score = 149 bits (376), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 121/192 (63%), Gaps = 10/192 (5%)
Query: 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
++ +V + D T+LG + P+ IAP+AMQK+AH +GE ATARAA IM LS +T
Sbjct: 51 ILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWAT 110
Query: 61 TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
+S+EEV + P + Q+Y++KDR + Q+V+RAER+G+ AI +T+DT LG R D+K
Sbjct: 111 SSVEEVASTGPGIRFF-QLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIK 169
Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
N+F +PP+L+L NF + D+ K + SGL+ YVA Q D S+ W DV L
Sbjct: 170 NRFVLPPFLTLKNFEGI-----DLGKMD----KANDSGLSSYVAGQIDRSLSWKDVAWLQ 220
Query: 181 QATKLPIVCKGI 192
T LPI+ KG+
Sbjct: 221 TITSLPILVKGV 232
>pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|B Chain B, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|C Chain C, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|D Chain D, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|E Chain E, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|F Chain F, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|G Chain G, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|H Chain H, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
Length = 352
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 2 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTT 61
+R++ D+ T+ G P+ I+P+A +A DGE +TARAA + ++S ++
Sbjct: 51 LRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASY 110
Query: 62 SLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKN 121
SLE++ A P W Q+Y+ D + QMVQRAE G+ A+VIT+DT VLG+R RD +N
Sbjct: 111 SLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRN 170
Query: 122 KFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDD-SVDWDDVRSLV 180
+ + + L + R LK+ T V F S W+D+ L
Sbjct: 171 QLNLEANILLKDLRALKEEKP-----------------TQSVPVSFPKASFCWNDLSLLQ 213
Query: 181 QATKLPIVCKGI 192
T+LPI+ KGI
Sbjct: 214 SITRLPIILKGI 225
>pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|B Chain B, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|C Chain C, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole
Length = 352
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 99/192 (51%), Gaps = 18/192 (9%)
Query: 2 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTT 61
+R++ D+ T+ G P+ I+P+A +A DGE +TARAA + ++S ++
Sbjct: 51 LRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASY 110
Query: 62 SLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKN 121
SLE++ A P W Q+Y+ D + QMVQRAE G+ A+VIT+DT VLG+R RD +N
Sbjct: 111 SLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRN 170
Query: 122 KFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDD-SVDWDDVRSLV 180
+ + + A R LK+ T V F S W+D+ L
Sbjct: 171 QLNLEANILKAALRALKEEKP-----------------TQSVPVLFPKASFCWNDLSLLQ 213
Query: 181 QATKLPIVCKGI 192
T+LPI+ KGI
Sbjct: 214 SITRLPIILKGI 225
>pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase
pdb|2A7P|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 3-Indolelactate
pdb|2A85|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 2- Hydroxyoctanoate
pdb|3GIY|A Chain A, Crystal Structures Of The G81a Mutant Of The Active
Chimera Of (S)-Mandelate Dehydrogenase And Its Complex
With Two Of Its Substrates
Length = 380
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 99/189 (52%), Gaps = 11/189 (5%)
Query: 4 NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSL 63
+V R VLG R P+ I P+A+ G++A ARAA +LS S S+
Sbjct: 56 DVSRRSLQAEVLGKRQSMPLLIGPTALNGALWPKGDLALARAATKAGIPFVLSTASNMSI 115
Query: 64 EEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKF 123
E++ A+ LW Q+Y+ R ++ MV +A +GY+ +V+T D AV G R RDL N+F
Sbjct: 116 EDL-ARQCDGDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRF 173
Query: 124 TMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQAT 183
+PP+L+L NF + D+ K D + E + L ++ Q D S +W+ +R L
Sbjct: 174 KIPPFLTLKNFEGI-----DLGKM-DKANLEMQAAL---MSRQMDASFNWEALRWLRDLW 224
Query: 184 KLPIVCKGI 192
++ KG+
Sbjct: 225 PHKLLVKGL 233
>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The
Membrane-Associated (S)- Mandelate Dehydrogenase From
Pseudomonas Putida At 2.15a Resolution
pdb|1P4C|A Chain A, High Resolution Structure Of Oxidized Active Mutant Of
(S)- Mandelate Dehydrogenase
pdb|1P5B|A Chain A, High Resolution Structure Of Reduced Active Mutant Of
(S)-Mandelate Dehydrogenase
Length = 380
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 95/179 (53%), Gaps = 11/179 (6%)
Query: 14 VLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPST 73
VLG R P+ I P+ + G++A ARAA +LS S S+E++ A+
Sbjct: 66 VLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDL-ARQCDG 124
Query: 74 TLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLAN 133
LW Q+Y+ R ++ MV +A +GY+ +V+T D AV G R RDL N+F +PP+L+L N
Sbjct: 125 DLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKN 183
Query: 134 FRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKGI 192
F + D+ K D + E + L ++ Q D S +W+ +R L ++ KG+
Sbjct: 184 FEGI-----DLGKM-DKANLEMQAAL---MSRQMDASFNWEALRWLRDLWPHKLLVKGL 233
>pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|B Chain B, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|C Chain C, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|D Chain D, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|E Chain E, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|F Chain F, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|G Chain G, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|H Chain H, The Crystal Structure Of Lactate Oxidase
Length = 374
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 15/192 (7%)
Query: 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
+ ++V D+ +LG + + P +AP A LAH E TARA IM +S S
Sbjct: 67 LAQDVEAPDTSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSG 126
Query: 61 TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
+ EE+ W Q+Y+ KD + ++ A+ G +AI++T D+ V G+R RD+K
Sbjct: 127 ATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVK 186
Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
NKF P + + R L+ E +S +I Y A++ + D+ +
Sbjct: 187 NKFVYPFGMPIVQ-RYLRGTAEGMS-LNNI-----------YGASK--QKISPRDIEEIA 231
Query: 181 QATKLPIVCKGI 192
+ LP+ KGI
Sbjct: 232 AHSGLPVFVKGI 243
>pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
pdb|2NLI|B Chain B, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
Length = 368
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 15/192 (7%)
Query: 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
+ ++V D+ +LG + + P +AP A LAH E TARA IM +S S
Sbjct: 61 LAQDVEAPDTSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSG 120
Query: 61 TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
+ EE+ W Q+Y+ KD + ++ A+ G +AI++T D+ V G+R RD+K
Sbjct: 121 ATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVK 180
Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
NKF P + + R L+ E +S +I Y A++ + D+ +
Sbjct: 181 NKFVYPFGMPIVQ-RYLRGTAEGMS-LNNI-----------YGASK--QKISPRDIEEIA 225
Query: 181 QATKLPIVCKGI 192
+ LP+ KGI
Sbjct: 226 GHSGLPVFVKGI 237
>pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|1 Chain 1, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|2 Chain 2, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|3 Chain 3, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Y Chain Y, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Z Chain Z, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 226
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Query: 13 TVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPS 72
T+LG + P+ IAP+AMQK+AH +GE ATARAA IM LS +T+S+EEV + P
Sbjct: 3 TILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPG 62
Query: 73 TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITM 107
+ Q+Y++KDR + Q+V+RAER+G+ AI +T+
Sbjct: 63 IR-FFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 96
>pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|B Chain B, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|C Chain C, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|D Chain D, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2E77|A Chain A, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|B Chain B, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|C Chain C, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|D Chain D, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2ZFA|A Chain A, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
pdb|2ZFA|B Chain B, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
Length = 374
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 15/192 (7%)
Query: 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
+ ++V D+ +LG + + P +AP A LAH E TARA IM +S S
Sbjct: 67 LAQDVEAPDTSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSG 126
Query: 61 TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
+ EE+ W Q+Y+ KD + ++ A+ G +AI++T D+ V G+R RD+K
Sbjct: 127 ATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVK 186
Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
NKF P + + R L+ E +S +I Y A++ + D+ +
Sbjct: 187 NKFVYPFGMPIVQ-RYLRGTAEGMS-LNNI-----------YGASK--QKISPRDIEEIA 231
Query: 181 QATKLPIVCKGI 192
+ LP+ KGI
Sbjct: 232 GHSGLPVFVKGI 243
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
Length = 410
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 94/184 (51%), Gaps = 20/184 (10%)
Query: 14 VLGTRYRCPVGIAPSAMQKLAHA-DGEVATARAAG--MMDAIMILSLMSTTSLEEVRAQN 70
+LG+ P ++ +A+ KL + +GE AR G + ++S +++ S EE+
Sbjct: 82 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 141
Query: 71 PS--TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPY 128
PS W Q+Y+ DR ++ +V+ E+ G A+ +T+D LG + +D+K KF+
Sbjct: 142 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQKEKDMKLKFSN--- 198
Query: 129 LSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIV 188
+ A F+ +K+ N E S G + ++ D S+ W D+ L + TKLPIV
Sbjct: 199 -TKAGFKAMKKTN-----------VEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIV 246
Query: 189 CKGI 192
KG+
Sbjct: 247 IKGV 250
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 20/184 (10%)
Query: 14 VLGTRYRCPVGIAPSAMQKLAHA-DGEVATARAAG--MMDAIMILSLMSTTSLEEVRAQN 70
+LG+ P ++ +A+ KL + +GE AR G + ++S +++ S EE+
Sbjct: 183 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 242
Query: 71 PS--TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPY 128
PS W Q+Y+ DR ++ +V+ E+ G A+ +T+D LG R +D+K KF+
Sbjct: 243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSN--- 299
Query: 129 LSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIV 188
+ A + +K+ N E S G + ++ D S+ W D+ L + TKLPIV
Sbjct: 300 -TKAGPKAMKKTN-----------VEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIV 347
Query: 189 CKGI 192
KG+
Sbjct: 348 IKGV 351
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 20/184 (10%)
Query: 14 VLGTRYRCPVGIAPSAMQKLAHA-DGEVATARAAG--MMDAIMILSLMSTTSLEEVRAQN 70
+LG+ P ++ +A+ KL + +GE AR G + ++S +++ S EE+
Sbjct: 183 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 242
Query: 71 PS--TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPY 128
PS W Q+Y+ DR ++ +V+ E+ G A+ +T+D LG R +D+K KF+
Sbjct: 243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSN--- 299
Query: 129 LSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIV 188
+ A + +K+ N E S G + ++ D S+ W D+ L + TKLPIV
Sbjct: 300 -TKAGPKAMKKTN-----------VEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIV 347
Query: 189 CKGI 192
KG+
Sbjct: 348 IKGV 351
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 20/184 (10%)
Query: 14 VLGTRYRCPVGIAPSAMQKLAHA-DGEVATARAAG--MMDAIMILSLMSTTSLEEVRAQN 70
+LG+ P ++ +A+ KL + +GE AR G + ++S +++ S EE+
Sbjct: 183 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 242
Query: 71 PS--TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPY 128
PS W Q+Y+ DR ++ +V+ E+ G A+ +T+D LG R +D+K KF+
Sbjct: 243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSN--- 299
Query: 129 LSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIV 188
+ A + +K+ N E S G + ++ D S+ W D+ L + TKLPIV
Sbjct: 300 -TKAGPKAMKKTN-----------VEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIV 347
Query: 189 CKGI 192
KG+
Sbjct: 348 IKGV 351
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 20/184 (10%)
Query: 14 VLGTRYRCPVGIAPSAMQKLAHA-DGEVATARAAG--MMDAIMILSLMSTTSLEEVRAQN 70
+LG+ P ++ +A+ KL + +GE AR G + ++S +++ S EE+
Sbjct: 178 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 237
Query: 71 PS--TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPY 128
PS W Q+Y+ DR ++ +V+ E+ G A+ +T+D LG R +D+K KF+
Sbjct: 238 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSN--- 294
Query: 129 LSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIV 188
+ A + +K+ N EE S G + ++ D S+ W D+ L + TKLPIV
Sbjct: 295 -TKAGPKAMKKTN----------VEE-SQGASRALSKFIDPSLTWKDIEELKKKTKLPIV 342
Query: 189 CKGI 192
KG+
Sbjct: 343 IKGV 346
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 412
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 20/184 (10%)
Query: 14 VLGTRYRCPVGIAPSAMQKLAHA-DGEVATARAAG--MMDAIMILSLMSTTSLEEVRAQN 70
+LG+ P ++ +A+ KL + +GE AR G + ++S +++ S EE+
Sbjct: 84 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAA 143
Query: 71 PS--TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPY 128
PS W Q+Y+ DR ++ +V+ E+ G A+ +T+D LG R +D+K KF+
Sbjct: 144 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSN--- 200
Query: 129 LSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIV 188
+ A + +K+ N E S G + ++ D S+ W D+ L + TKLPIV
Sbjct: 201 -TKAGPKAMKKTN-----------VEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIV 248
Query: 189 CKGI 192
KG+
Sbjct: 249 IKGV 252
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 20/184 (10%)
Query: 14 VLGTRYRCPVGIAPSAMQKLAHA-DGEVATARAAG--MMDAIMILSLMSTTSLEEVRAQN 70
+LG+ P ++ +A+ KL + +GE AR G + ++S ++ S EE+
Sbjct: 183 MLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTAASCSPEEIIEAA 242
Query: 71 PS--TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPY 128
PS W Q+Y+ DR ++ +V+ E+ G A+ +T+D LG R +D+K KF+
Sbjct: 243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSN--- 299
Query: 129 LSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIV 188
+ A + +K+ N E S G + ++ D S+ W D+ L + TKLPIV
Sbjct: 300 -TKAGPKAMKKTN-----------VEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIV 347
Query: 189 CKGI 192
KG+
Sbjct: 348 IKGV 351
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 20/184 (10%)
Query: 14 VLGTRYRCPVGIAPSAMQKLAHA-DGEVATARAAG--MMDAIMILSLMSTTSLEEVRAQN 70
+LG+ P ++ + + KL + +GE AR G + ++S ++ S EE+
Sbjct: 183 MLGSHVDVPFYVSATGLCKLGNPLEGEKDVARGCGQGVTKVPQMISTAASCSPEEIIEAA 242
Query: 71 PS--TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPY 128
PS W Q+Y+ DR ++ +V+ E+ G A+ +T+D LG R +D+K KF+
Sbjct: 243 PSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSN--- 299
Query: 129 LSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIV 188
+ A + +K+ N E S G + ++ D S+ W D+ L + TKLPIV
Sbjct: 300 -TKAGPKAMKKTN-----------VEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIV 347
Query: 189 CKGI 192
KG+
Sbjct: 348 IKGV 351
>pdb|2FUK|A Chain A, Crystal Structure Of Xc6422 From Xanthomonas Campestris: A
Member Of AB SERINE HYDROLASE WITHOUT LID AT 1.6
Resolution
Length = 220
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 20/75 (26%)
Query: 8 RDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVR 67
R+ G+TV+ +R VG ++ H DGE RA E VR
Sbjct: 66 RELGITVVRFNFRS-VG---TSAGSFDHGDGEQDDLRAVA----------------EWVR 105
Query: 68 AQNPSTTLWLQMYIF 82
AQ P+ TLWL + F
Sbjct: 106 AQRPTDTLWLAGFSF 120
>pdb|3TNG|A Chain A, The Crystal Structure Of A Possible Phosphate
AcetylBUTARYL Transferase From Listeria Monocytogenes
Egd-E.
pdb|3U9E|A Chain A, The Crystal Structure Of A Possible Phosphate
AcetylBUTARYL Transferase (From Listeria Monocytogenes
Egd-E) In Complex With Coa.
pdb|3U9E|B Chain B, The Crystal Structure Of A Possible Phosphate
AcetylBUTARYL Transferase (From Listeria Monocytogenes
Egd-E) In Complex With Coa.
pdb|3UF6|A Chain A, The Crystal Structure Of A Possible Phosphate
AcetylBUTARYL Transferase (From Listeria Monocytogenes
Egd-E) In Complex With Cod (3'-Dephosphocoenzyme A)
pdb|3UF6|B Chain B, The Crystal Structure Of A Possible Phosphate
AcetylBUTARYL Transferase (From Listeria Monocytogenes
Egd-E) In Complex With Cod (3'-Dephosphocoenzyme A)
Length = 291
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 21 CPVGIAPSAMQKLAHADGEVATARAAGMMD-AIMILSLMSTTSLEEVRAQNPST 73
C +AP +K+A + +A A G+ + I +LS ++EEV A+ PST
Sbjct: 137 CAXNVAPKTKEKIAITENALAVAHQIGITNPKIALLS-----AVEEVTAKXPST 185
>pdb|2QM4|A Chain A, Crystal Structure Of Human Xlf/cernunnos, A Non-homologous
End-joining Factor
pdb|2QM4|B Chain B, Crystal Structure Of Human Xlf/cernunnos, A Non-homologous
End-joining Factor
pdb|2QM4|C Chain C, Crystal Structure Of Human Xlf/cernunnos, A Non-homologous
End-joining Factor
pdb|2QM4|D Chain D, Crystal Structure Of Human Xlf/cernunnos, A Non-homologous
End-joining Factor
Length = 235
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 97 RSGYSAIVITM--------DTAVLGSRYRDLKNKFTMPPYLSLANFRNL 137
+ GY+ +V + DT+V+ R ++L + T PP L + NL
Sbjct: 33 KQGYALLVSDLQQVWHEQVDTSVVSQRAKELNKRLTAPPAAFLCHLDNL 81
>pdb|3W03|A Chain A, Xlf-Xrcc4 Complex
pdb|3W03|B Chain B, Xlf-Xrcc4 Complex
Length = 235
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 97 RSGYSAIVITM--------DTAVLGSRYRDLKNKFTMPPYLSLANFRNL 137
+ GY+ +V + DT+V+ R ++L + T PP L + NL
Sbjct: 33 KQGYALLVSDLQQVWHEQVDTSVVSQRAKELNKRLTAPPAAFLCHLDNL 81
>pdb|2R9A|A Chain A, Crystal Structure Of Human Xlf
pdb|2R9A|B Chain B, Crystal Structure Of Human Xlf
Length = 230
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 97 RSGYSAIVITM--------DTAVLGSRYRDLKNKFTMPPYLSLANFRNL 137
+ GY+ +V + DT+V+ R ++L + T PP L + NL
Sbjct: 31 KQGYALLVSDLQQVWHEQVDTSVVSQRAKELNKRLTAPPAAFLCHLDNL 79
>pdb|3A5X|A Chain A, L-Type Straight Flagellar Filament Made Of Full-Length
Flagellin
Length = 494
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 7 DRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEV 40
++D +++ T+Y G + +A+ KL ADG+
Sbjct: 337 NKDGSISINTTKYTADDGTSKTALNKLGGADGKT 370
>pdb|3Q4F|E Chain E, Crystal Structure Of Xrcc4XLF-Cernunnos Complex
pdb|3Q4F|F Chain F, Crystal Structure Of Xrcc4XLF-Cernunnos Complex
pdb|3Q4F|A Chain A, Crystal Structure Of Xrcc4XLF-Cernunnos Complex
pdb|3Q4F|B Chain B, Crystal Structure Of Xrcc4XLF-Cernunnos Complex
pdb|3RWR|D Chain D, Crystal Structure Of The Human Xrcc4-Xlf Complex
pdb|3RWR|E Chain E, Crystal Structure Of The Human Xrcc4-Xlf Complex
pdb|3RWR|H Chain H, Crystal Structure Of The Human Xrcc4-Xlf Complex
pdb|3RWR|I Chain I, Crystal Structure Of The Human Xrcc4-Xlf Complex
pdb|3RWR|L Chain L, Crystal Structure Of The Human Xrcc4-Xlf Complex
pdb|3RWR|M Chain M, Crystal Structure Of The Human Xrcc4-Xlf Complex
pdb|3RWR|O Chain O, Crystal Structure Of The Human Xrcc4-Xlf Complex
pdb|3RWR|Q Chain Q, Crystal Structure Of The Human Xrcc4-Xlf Complex
pdb|3RWR|S Chain S, Crystal Structure Of The Human Xrcc4-Xlf Complex
pdb|3RWR|W Chain W, Crystal Structure Of The Human Xrcc4-Xlf Complex
pdb|3RWR|T Chain T, Crystal Structure Of The Human Xrcc4-Xlf Complex
pdb|3RWR|X Chain X, Crystal Structure Of The Human Xrcc4-Xlf Complex
Length = 230
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 97 RSGYSAIVITM--------DTAVLGSRYRDLKNKFTMPPYLSLANFRNL 137
+ GY+ +V + DT+V+ R ++L + T PP L + NL
Sbjct: 31 KQGYALLVSDLQQVWHEQVDTSVVSQRAKELNKRLTAPPAAFLCHLDNL 79
>pdb|1UCU|A Chain A, R-type Straight Flagellar Filament Made Of Full-length
Flagellin
Length = 494
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 7 DRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEV 40
++D +++ T+Y G + +A+ KL ADG+
Sbjct: 337 NKDGSISINTTKYTADDGTSKTALNKLGGADGKT 370
>pdb|3SR2|C Chain C, Crystal Structure Of Human Xlf-Xrcc4 Complex
pdb|3SR2|D Chain D, Crystal Structure Of Human Xlf-Xrcc4 Complex
pdb|3SR2|G Chain G, Crystal Structure Of Human Xlf-Xrcc4 Complex
pdb|3SR2|H Chain H, Crystal Structure Of Human Xlf-Xrcc4 Complex
Length = 229
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 97 RSGYSAIVITM--------DTAVLGSRYRDLKNKFTMPPYLSLANFRNL 137
+ GY+ +V + DT+V+ R ++L + T PP L + NL
Sbjct: 36 KQGYALLVSDLQQVWHEQVDTSVVSQRAKELNKRLTAPPAAFLCHLDNL 84
>pdb|1IO1|A Chain A, Crystal Structure Of F41 Fragment Of Flagellin
Length = 398
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 7 DRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEV 40
++D +++ T+Y G + +A+ KL ADG+
Sbjct: 285 NKDGSISINTTKYTADDGTSKTALNKLGGADGKT 318
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,960,352
Number of Sequences: 62578
Number of extensions: 164306
Number of successful extensions: 458
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 34
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)