Query psy13219
Match_columns 193
No_of_seqs 180 out of 1300
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 23:10:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13219.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13219hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0538|consensus 100.0 2.5E-63 5.5E-68 422.4 15.3 184 1-193 49-232 (363)
2 PLN02493 probable peroxisomal 100.0 2.7E-57 5.9E-62 400.0 17.7 183 1-193 51-233 (367)
3 PLN02979 glycolate oxidase 100.0 5.4E-57 1.2E-61 396.2 18.0 183 1-193 50-232 (366)
4 PRK11197 lldD L-lactate dehydr 100.0 5.5E-56 1.2E-60 393.6 17.2 191 1-193 51-254 (381)
5 cd04736 MDH_FMN Mandelate dehy 100.0 6.9E-56 1.5E-60 390.6 17.6 191 1-193 45-245 (361)
6 PLN02535 glycolate oxidase 100.0 1.2E-54 2.6E-59 383.3 17.5 180 1-193 53-232 (364)
7 cd03332 LMO_FMN L-Lactate 2-mo 100.0 1.8E-53 3.8E-58 378.0 17.0 189 1-193 66-262 (383)
8 TIGR02708 L_lactate_ox L-lacta 100.0 9.3E-53 2E-57 371.5 16.9 177 1-193 61-237 (367)
9 cd04737 LOX_like_FMN L-Lactate 100.0 1.3E-50 2.8E-55 356.7 16.3 178 1-193 53-230 (351)
10 PF01070 FMN_dh: FMN-dependent 100.0 6.4E-50 1.4E-54 353.4 15.3 192 1-193 39-234 (356)
11 cd02922 FCB2_FMN Flavocytochro 100.0 7.1E-49 1.5E-53 345.2 18.0 177 1-193 45-222 (344)
12 COG1304 idi Isopentenyl diphos 100.0 4.3E-38 9.3E-43 277.7 9.5 183 1-193 45-227 (360)
13 cd02809 alpha_hydroxyacid_oxid 99.9 1.7E-25 3.7E-30 193.5 16.0 136 1-192 45-180 (299)
14 PRK05437 isopentenyl pyrophosp 99.3 1.1E-11 2.3E-16 110.0 10.6 105 4-108 44-157 (352)
15 cd02811 IDI-2_FMN Isopentenyl- 99.3 1.8E-11 4E-16 107.4 11.7 99 4-108 36-149 (326)
16 TIGR02151 IPP_isom_2 isopenten 99.2 1.3E-10 2.8E-15 102.3 11.3 103 3-108 36-150 (333)
17 TIGR01306 GMP_reduct_2 guanosi 98.5 1.3E-06 2.9E-11 76.7 10.1 94 3-110 17-117 (321)
18 PRK05458 guanosine 5'-monophos 98.0 3.5E-05 7.7E-10 67.9 9.2 56 3-67 20-75 (326)
19 TIGR01037 pyrD_sub1_fam dihydr 97.0 0.012 2.6E-07 50.8 11.4 96 10-112 1-131 (300)
20 PRK07259 dihydroorotate dehydr 97.0 0.016 3.5E-07 50.0 12.1 96 9-111 1-130 (301)
21 cd04740 DHOD_1B_like Dihydroor 96.9 0.02 4.4E-07 49.2 11.9 40 72-112 89-128 (296)
22 PRK08649 inosine 5-monophospha 96.9 0.0084 1.8E-07 53.8 9.7 90 4-99 31-131 (368)
23 cd04739 DHOD_like Dihydroorota 96.7 0.025 5.4E-07 49.7 11.5 37 72-109 99-135 (325)
24 PLN02495 oxidoreductase, actin 96.7 0.022 4.7E-07 51.5 11.1 24 6-29 7-30 (385)
25 cd02940 DHPD_FMN Dihydropyrimi 96.7 0.044 9.6E-07 47.5 12.7 41 72-112 99-139 (299)
26 TIGR01304 IMP_DH_rel_2 IMP deh 96.4 0.027 5.8E-07 50.6 9.6 91 3-99 27-132 (369)
27 cd02810 DHOD_DHPD_FMN Dihydroo 96.1 0.09 2E-06 44.9 11.0 41 72-113 98-138 (289)
28 TIGR01305 GMP_reduct_1 guanosi 96.1 0.047 1E-06 48.4 9.2 53 6-66 26-83 (343)
29 cd00381 IMPDH IMPDH: The catal 96.0 0.027 5.8E-07 49.6 7.6 94 4-107 17-114 (325)
30 TIGR00737 nifR3_yhdG putative 95.9 0.058 1.3E-06 47.1 9.3 88 16-110 3-99 (319)
31 cd02808 GltS_FMN Glutamate syn 95.7 0.074 1.6E-06 48.0 9.2 50 18-69 75-124 (392)
32 PRK07565 dihydroorotate dehydr 95.7 0.19 4.1E-06 44.2 11.4 23 9-31 2-24 (334)
33 PRK08318 dihydropyrimidine deh 95.6 0.13 2.8E-06 46.6 10.3 40 72-111 99-138 (420)
34 PRK02506 dihydroorotate dehydr 95.1 0.43 9.3E-06 41.7 11.7 20 9-28 1-20 (310)
35 PRK05286 dihydroorotate dehydr 94.0 0.91 2E-05 40.2 11.4 43 6-55 45-87 (344)
36 PRK06843 inosine 5-monophospha 93.2 1 2.3E-05 41.0 10.4 56 6-69 27-83 (404)
37 cd04738 DHOD_2_like Dihydrooro 92.9 1.2 2.7E-05 39.0 10.3 24 4-27 33-56 (327)
38 PRK10415 tRNA-dihydrouridine s 90.3 4.5 9.8E-05 35.5 10.9 89 16-111 5-102 (321)
39 cd04741 DHOD_1A_like Dihydroor 90.1 3.1 6.8E-05 35.9 9.6 17 12-28 1-17 (294)
40 TIGR01036 pyrD_sub2 dihydrooro 87.8 9.7 0.00021 33.7 11.3 39 10-55 46-84 (335)
41 cd04728 ThiG Thiazole synthase 87.2 1.8 3.8E-05 37.0 5.9 86 73-191 90-182 (248)
42 PRK06806 fructose-bisphosphate 86.8 7 0.00015 33.8 9.6 157 18-191 40-207 (281)
43 PF08029 HisG_C: HisG, C-termi 85.5 1.3 2.8E-05 30.9 3.6 55 52-106 6-70 (75)
44 PRK11815 tRNA-dihydrouridine s 85.3 6.5 0.00014 34.7 8.8 90 16-112 6-103 (333)
45 KOG2335|consensus 85.2 10 0.00022 34.0 9.9 24 168-191 186-210 (358)
46 PF01180 DHO_dh: Dihydroorotat 83.9 4.5 9.8E-05 34.7 7.1 18 10-27 2-19 (295)
47 TIGR03455 HisG_C-term ATP phos 83.3 6.7 0.00015 28.7 6.8 57 50-106 28-94 (100)
48 cd02801 DUS_like_FMN Dihydrour 82.9 9.1 0.0002 31.1 8.2 40 71-111 53-92 (231)
49 cd08585 GDPD_like_3 Glyceropho 82.2 4.5 9.7E-05 33.8 6.2 73 39-111 118-221 (237)
50 PRK00208 thiG thiazole synthas 82.1 4.8 0.0001 34.4 6.3 86 73-191 90-182 (250)
51 cd04730 NPD_like 2-Nitropropan 81.6 6.7 0.00014 32.1 7.0 82 20-108 2-89 (236)
52 cd00951 KDGDH 5-dehydro-4-deox 81.4 11 0.00024 32.3 8.6 85 21-107 5-102 (289)
53 COG0167 PyrD Dihydroorotate de 81.3 38 0.00082 29.9 11.9 40 9-52 1-40 (310)
54 TIGR03151 enACPred_II putative 79.7 6.2 0.00013 34.4 6.5 85 12-108 5-96 (307)
55 COG0191 Fba Fructose/tagatose 78.8 20 0.00044 31.2 9.2 24 168-191 188-211 (286)
56 cd04722 TIM_phosphate_binding 77.7 9.5 0.00021 29.2 6.4 74 37-111 12-96 (200)
57 PRK13396 3-deoxy-7-phosphohept 77.5 29 0.00064 31.1 10.1 67 27-100 143-209 (352)
58 PF01207 Dus: Dihydrouridine s 75.8 16 0.00034 31.9 7.8 24 168-191 167-190 (309)
59 TIGR01361 DAHP_synth_Bsub phos 74.7 34 0.00073 29.2 9.5 45 40-106 122-166 (260)
60 PRK03620 5-dehydro-4-deoxygluc 74.5 21 0.00046 30.9 8.3 86 21-108 12-110 (303)
61 cd08612 GDPD_GDE4 Glycerophosp 74.4 8.5 0.00018 33.2 5.8 24 87-110 249-272 (300)
62 PRK07998 gatY putative fructos 74.4 20 0.00044 31.1 8.1 71 35-112 27-108 (283)
63 PRK10550 tRNA-dihydrouridine s 73.6 23 0.0005 31.0 8.3 39 72-111 62-100 (312)
64 PRK11081 tRNA guanosine-2'-O-m 73.1 15 0.00033 30.8 6.8 76 30-108 24-99 (229)
65 PRK03170 dihydrodipicolinate s 72.1 29 0.00062 29.7 8.5 86 21-107 6-104 (292)
66 COG0042 tRNA-dihydrouridine sy 71.6 27 0.00058 30.8 8.3 67 35-109 77-143 (323)
67 smart00481 POLIIIAc DNA polyme 71.4 5.5 0.00012 26.2 3.1 23 87-109 16-38 (67)
68 TIGR03884 sel_bind_Methan sele 70.7 6.1 0.00013 27.5 3.2 27 84-110 26-54 (74)
69 cd02810 DHOD_DHPD_FMN Dihydroo 70.3 66 0.0014 27.2 10.3 34 73-106 163-196 (289)
70 TIGR03249 KdgD 5-dehydro-4-deo 70.1 35 0.00076 29.3 8.6 85 21-107 10-107 (296)
71 cd08573 GDPD_GDE1 Glycerophosp 70.0 19 0.00042 30.3 6.9 25 87-111 216-240 (258)
72 TIGR00683 nanA N-acetylneurami 69.9 38 0.00082 29.1 8.8 86 21-107 5-104 (290)
73 PRK11858 aksA trans-homoaconit 69.4 31 0.00068 30.9 8.4 74 36-109 51-139 (378)
74 PRK10550 tRNA-dihydrouridine s 67.1 51 0.0011 28.8 9.1 21 86-106 148-168 (312)
75 cd00950 DHDPS Dihydrodipicolin 67.1 42 0.00091 28.4 8.4 85 21-106 5-102 (284)
76 cd00945 Aldolase_Class_I Class 66.2 39 0.00085 26.1 7.6 73 35-109 11-88 (201)
77 PRK02227 hypothetical protein; 66.1 56 0.0012 27.8 8.8 83 25-110 55-153 (238)
78 cd00408 DHDPS-like Dihydrodipi 66.1 54 0.0012 27.6 8.9 86 21-107 2-100 (281)
79 TIGR00742 yjbN tRNA dihydrouri 65.6 41 0.00089 29.5 8.2 83 22-111 2-92 (318)
80 PF00478 IMPDH: IMP dehydrogen 65.5 24 0.00053 31.6 6.8 52 5-64 21-73 (352)
81 cd08583 PI-PLCc_GDPD_SF_unchar 65.5 14 0.00029 30.6 5.0 70 41-110 121-216 (237)
82 PF01902 ATP_bind_4: ATP-bindi 65.5 36 0.00078 28.3 7.5 86 19-113 57-148 (218)
83 PRK08227 autoinducer 2 aldolas 65.1 37 0.0008 29.2 7.6 88 17-106 137-226 (264)
84 PF01645 Glu_synthase: Conserv 64.7 4.2 9.2E-05 36.6 1.9 72 18-94 63-134 (368)
85 PRK01033 imidazole glycerol ph 61.8 79 0.0017 26.6 9.1 66 41-110 65-132 (258)
86 PRK00489 hisG ATP phosphoribos 61.7 33 0.00072 29.3 6.8 56 51-106 215-280 (287)
87 TIGR00674 dapA dihydrodipicoli 61.1 65 0.0014 27.4 8.5 86 21-107 3-101 (285)
88 COG1591 Holliday junction reso 59.9 31 0.00067 26.8 5.6 69 36-104 7-84 (137)
89 cd08559 GDPD_periplasmic_GlpQ_ 59.7 40 0.00087 28.9 7.0 71 39-109 149-266 (296)
90 PRK05096 guanosine 5'-monophos 59.7 31 0.00067 30.9 6.3 54 6-67 27-85 (346)
91 cd08568 GDPD_TmGDE_like Glycer 59.6 57 0.0012 26.6 7.6 71 40-110 106-205 (226)
92 PLN02417 dihydrodipicolinate s 59.5 73 0.0016 27.1 8.6 86 21-107 6-104 (280)
93 PRK01130 N-acetylmannosamine-6 59.1 40 0.00088 27.4 6.7 66 40-111 26-98 (221)
94 PRK11840 bifunctional sulfur c 59.0 22 0.00047 31.6 5.2 47 73-119 164-217 (326)
95 COG2185 Sbm Methylmalonyl-CoA 58.4 88 0.0019 24.5 8.3 83 23-108 15-100 (143)
96 COG1606 ATP-utilizing enzymes 58.2 10 0.00023 32.6 3.0 29 91-119 33-62 (269)
97 TIGR02090 LEU1_arch isopropylm 58.0 52 0.0011 29.3 7.6 74 36-109 47-135 (363)
98 PRK12855 hypothetical protein; 57.7 13 0.00029 27.4 3.2 27 85-111 59-86 (103)
99 PRK08673 3-deoxy-7-phosphohept 57.4 29 0.00062 30.9 5.8 65 29-100 137-201 (335)
100 PRK13397 3-deoxy-7-phosphohept 57.2 31 0.00067 29.5 5.7 43 26-69 56-98 (250)
101 PF01906 YbjQ_1: Putative heav 56.9 14 0.0003 27.0 3.2 28 85-112 59-87 (105)
102 PRK12595 bifunctional 3-deoxy- 56.9 27 0.00059 31.3 5.6 39 30-69 163-201 (360)
103 PF01068 DNA_ligase_A_M: ATP d 56.8 47 0.001 26.3 6.5 44 72-115 149-194 (202)
104 cd07939 DRE_TIM_NifV Streptomy 56.4 80 0.0017 26.5 8.2 73 37-109 46-133 (259)
105 PRK02877 hypothetical protein; 56.3 15 0.00032 27.3 3.2 29 85-113 59-88 (106)
106 PF01116 F_bP_aldolase: Fructo 56.2 16 0.00035 31.7 4.0 72 35-113 26-108 (287)
107 PF00701 DHDPS: Dihydrodipicol 56.1 95 0.0021 26.3 8.7 85 22-107 7-104 (289)
108 TIGR02313 HpaI-NOT-DapA 2,4-di 56.0 90 0.002 26.8 8.6 86 21-107 5-103 (294)
109 PRK05835 fructose-bisphosphate 55.9 28 0.00061 30.6 5.4 70 33-106 24-104 (307)
110 cd00947 TBP_aldolase_IIB Tagat 55.5 28 0.00061 30.1 5.3 73 34-113 21-104 (276)
111 COG2070 Dioxygenases related t 55.3 47 0.001 29.5 6.8 84 26-116 78-163 (336)
112 TIGR01858 tag_bisphos_ald clas 55.2 24 0.00052 30.6 4.9 75 34-115 24-109 (282)
113 cd08601 GDPD_SaGlpQ_like Glyce 54.7 53 0.0011 27.3 6.8 72 39-110 128-229 (256)
114 PTZ00314 inosine-5'-monophosph 54.3 42 0.00091 31.4 6.6 94 6-108 35-135 (495)
115 TIGR00167 cbbA ketose-bisphosp 54.0 26 0.00057 30.5 4.9 75 34-114 26-113 (288)
116 cd07896 Adenylation_kDNA_ligas 53.6 70 0.0015 24.9 7.0 42 74-115 123-165 (174)
117 PRK12856 hypothetical protein; 53.5 17 0.00038 26.8 3.2 27 85-111 59-86 (103)
118 PF06506 PrpR_N: Propionate ca 53.1 39 0.00085 26.6 5.5 84 15-106 48-132 (176)
119 cd08563 GDPD_TtGDE_like Glycer 52.9 62 0.0013 26.4 6.8 71 39-110 120-211 (230)
120 cd07015 Clp_protease_NfeD Nodu 52.8 19 0.00042 28.8 3.6 28 85-112 15-42 (172)
121 COG0329 DapA Dihydrodipicolina 52.3 1.1E+02 0.0024 26.5 8.5 86 21-107 9-107 (299)
122 cd08605 GDPD_GDE5_like_1_plant 51.6 31 0.00067 29.2 4.9 59 52-110 172-263 (282)
123 PRK01119 hypothetical protein; 51.5 19 0.00042 26.7 3.2 29 85-113 59-88 (106)
124 PRK09195 gatY tagatose-bisphos 51.4 31 0.00068 30.0 4.9 74 33-113 25-109 (284)
125 TIGR01859 fruc_bis_ald_ fructo 51.3 1.6E+02 0.0035 25.4 10.5 24 168-191 184-207 (282)
126 PRK13398 3-deoxy-7-phosphohept 51.3 43 0.00093 28.7 5.7 48 27-79 69-116 (266)
127 PRK04147 N-acetylneuraminate l 51.1 1E+02 0.0023 26.3 8.2 86 21-107 8-107 (293)
128 cd04795 SIS SIS domain. SIS (S 51.0 71 0.0015 21.2 7.7 33 74-106 49-81 (87)
129 cd07021 Clp_protease_NfeD_like 50.9 22 0.00048 28.5 3.7 28 85-112 15-42 (178)
130 TIGR00289 conserved hypothetic 50.4 32 0.00069 28.8 4.7 45 63-113 103-147 (222)
131 PRK09622 porA pyruvate flavodo 50.4 56 0.0012 29.7 6.7 68 36-106 13-86 (407)
132 COG0393 Uncharacterized conser 50.3 20 0.00044 26.8 3.1 28 86-113 60-88 (108)
133 TIGR02660 nifV_homocitr homoci 50.2 1.1E+02 0.0023 27.3 8.4 67 37-103 49-130 (365)
134 cd01994 Alpha_ANH_like_IV This 49.5 40 0.00087 27.3 5.1 24 90-113 128-151 (194)
135 PRK07709 fructose-bisphosphate 49.3 68 0.0015 27.9 6.7 24 168-191 187-210 (285)
136 cd08581 GDPD_like_1 Glyceropho 49.0 48 0.001 27.3 5.6 57 52-110 137-210 (229)
137 cd00954 NAL N-Acetylneuraminic 49.0 1.5E+02 0.0031 25.3 8.7 86 21-107 5-104 (288)
138 cd02940 DHPD_FMN Dihydropyrimi 48.8 1.2E+02 0.0026 26.0 8.2 32 73-106 169-200 (299)
139 cd03174 DRE_TIM_metallolyase D 48.6 94 0.002 25.5 7.4 68 40-110 54-139 (265)
140 PF05036 SPOR: Sporulation rel 47.6 43 0.00093 21.7 4.2 32 73-104 3-34 (76)
141 TIGR00742 yjbN tRNA dihydrouri 47.5 1.6E+02 0.0035 25.8 8.9 22 170-191 180-202 (318)
142 PRK12737 gatY tagatose-bisphos 47.4 44 0.00095 29.0 5.2 72 34-112 26-108 (284)
143 COG1250 FadB 3-hydroxyacyl-CoA 47.3 48 0.001 29.2 5.5 60 55-115 115-191 (307)
144 PRK12738 kbaY tagatose-bisphos 47.3 42 0.00091 29.2 5.1 75 34-115 26-111 (286)
145 PRK00967 hypothetical protein; 47.2 25 0.00054 26.0 3.2 29 85-113 59-88 (105)
146 PF03060 NMO: Nitronate monoox 47.0 1.6E+02 0.0034 25.8 8.8 38 13-58 6-43 (330)
147 cd04742 NPD_FabD 2-Nitropropan 46.7 1.2E+02 0.0027 27.8 8.3 86 12-105 7-101 (418)
148 TIGR00290 MJ0570_dom MJ0570-re 46.7 39 0.00085 28.3 4.7 69 40-113 75-148 (223)
149 COG2876 AroA 3-deoxy-D-arabino 46.7 1.5E+02 0.0033 25.8 8.2 43 26-69 86-128 (286)
150 PRK09454 ugpQ cytoplasmic glyc 46.6 38 0.00082 28.2 4.6 59 52-110 144-220 (249)
151 PRK11633 cell division protein 46.5 46 0.001 28.0 5.1 39 72-110 147-185 (226)
152 cd04740 DHOD_1B_like Dihydroor 46.5 1.7E+02 0.0037 24.8 8.8 31 73-105 155-185 (296)
153 TIGR03470 HpnH hopanoid biosyn 46.3 1.4E+02 0.0031 25.9 8.4 79 25-104 76-167 (318)
154 PRK13585 1-(5-phosphoribosyl)- 46.2 63 0.0014 26.5 5.9 23 169-191 178-200 (241)
155 PRK01217 hypothetical protein; 46.0 26 0.00057 26.3 3.2 29 85-113 66-95 (114)
156 TIGR03151 enACPred_II putative 45.9 68 0.0015 27.9 6.3 58 40-106 77-136 (307)
157 PRK13399 fructose-1,6-bisphosp 45.8 50 0.0011 29.6 5.4 70 33-106 25-105 (347)
158 PRK12857 fructose-1,6-bisphosp 45.7 48 0.001 28.8 5.2 74 35-115 27-111 (284)
159 cd08600 GDPD_EcGlpQ_like Glyce 45.5 1.2E+02 0.0025 26.5 7.7 73 38-111 155-288 (318)
160 cd06557 KPHMT-like Ketopantoat 45.5 65 0.0014 27.5 5.9 25 83-107 152-179 (254)
161 PF02811 PHP: PHP domain; Int 45.4 21 0.00046 27.1 2.8 27 87-113 17-43 (175)
162 PRK07119 2-ketoisovalerate fer 45.4 72 0.0016 28.4 6.4 70 36-108 7-80 (352)
163 TIGR01521 FruBisAldo_II_B fruc 45.4 51 0.0011 29.6 5.4 69 34-106 24-103 (347)
164 cd08555 PI-PLCc_GDPD_SF Cataly 45.2 28 0.0006 27.4 3.5 25 85-109 135-159 (179)
165 cd02801 DUS_like_FMN Dihydrour 45.1 1.6E+02 0.0035 23.6 8.9 19 171-189 170-188 (231)
166 TIGR00284 dihydropteroate synt 45.1 56 0.0012 30.7 5.9 66 40-106 218-286 (499)
167 TIGR00007 phosphoribosylformim 45.0 1.7E+02 0.0036 23.8 9.7 65 42-110 64-130 (230)
168 PRK08366 vorA 2-ketoisovalerat 44.9 91 0.002 28.3 7.1 67 37-106 7-79 (390)
169 cd08579 GDPD_memb_like Glycero 44.8 89 0.0019 25.2 6.5 71 40-110 115-201 (220)
170 PRK06361 hypothetical protein; 44.5 25 0.00053 28.4 3.1 25 87-111 11-35 (212)
171 TIGR01501 MthylAspMutase methy 44.1 1.2E+02 0.0025 23.4 6.7 68 35-103 14-84 (134)
172 PRK06801 hypothetical protein; 44.1 46 0.00099 28.9 4.9 74 35-115 27-111 (286)
173 cd08574 GDPD_GDE_2_3_6 Glycero 44.0 59 0.0013 27.2 5.4 71 39-110 148-234 (252)
174 PRK10864 putative methyltransf 44.0 53 0.0012 29.4 5.3 58 49-106 173-230 (346)
175 COG0040 HisG ATP phosphoribosy 43.7 1.1E+02 0.0024 26.8 7.1 63 44-106 211-283 (290)
176 cd08205 RuBisCO_IV_RLP Ribulos 43.3 1.8E+02 0.0039 26.1 8.7 91 20-113 129-235 (367)
177 PF05226 CHASE2: CHASE2 domain 43.0 32 0.0007 29.3 3.8 33 81-113 59-91 (310)
178 PRK00748 1-(5-phosphoribosyl)- 42.6 1.7E+02 0.0038 23.6 8.0 61 45-110 69-131 (233)
179 PF02593 dTMP_synthase: Thymid 42.5 31 0.00067 28.9 3.4 34 83-116 60-93 (217)
180 TIGR00222 panB 3-methyl-2-oxob 42.1 76 0.0017 27.3 5.8 27 82-108 153-182 (263)
181 PRK03732 hypothetical protein; 42.0 33 0.00072 25.8 3.2 26 85-110 66-92 (114)
182 cd08580 GDPD_Rv2277c_like Glyc 41.8 37 0.00081 28.9 3.9 72 39-110 122-241 (263)
183 PRK05567 inosine 5'-monophosph 41.6 78 0.0017 29.4 6.3 93 6-107 26-125 (486)
184 COG2121 Uncharacterized protei 41.4 1.2E+02 0.0025 25.4 6.6 56 35-115 77-132 (214)
185 COG4464 CapC Capsular polysacc 41.3 32 0.0007 29.1 3.3 27 82-108 16-42 (254)
186 TIGR01361 DAHP_synth_Bsub phos 40.8 77 0.0017 27.0 5.7 57 38-100 77-133 (260)
187 PLN02424 ketopantoate hydroxym 40.0 54 0.0012 29.2 4.7 25 83-107 176-203 (332)
188 COG1830 FbaB DhnA-type fructos 40.0 1.2E+02 0.0025 26.3 6.6 88 17-105 140-236 (265)
189 PRK09196 fructose-1,6-bisphosp 39.2 71 0.0015 28.7 5.4 68 35-106 27-105 (347)
190 PLN02274 inosine-5'-monophosph 38.6 26 0.00057 32.8 2.7 94 6-108 39-139 (505)
191 PF03599 CdhD: CO dehydrogenas 38.6 1.2E+02 0.0025 27.7 6.7 35 81-115 151-185 (386)
192 cd03319 L-Ala-DL-Glu_epimerase 38.5 85 0.0018 27.0 5.7 20 170-189 214-233 (316)
193 PRK14582 pgaB outer membrane N 38.4 1.8E+02 0.004 28.5 8.4 67 41-107 258-355 (671)
194 PF06414 Zeta_toxin: Zeta toxi 38.3 30 0.00066 27.6 2.7 32 80-111 100-131 (199)
195 TIGR03679 arCOG00187 arCOG0018 37.9 38 0.00083 27.9 3.3 24 90-113 126-149 (218)
196 cd01097 Tetrahydromethanopteri 37.8 18 0.00038 28.9 1.2 29 84-112 13-41 (202)
197 PRK00311 panB 3-methyl-2-oxobu 37.3 1.1E+02 0.0024 26.2 6.2 25 82-106 154-181 (264)
198 cd02072 Glm_B12_BD B12 binding 37.2 1.4E+02 0.003 22.8 6.1 25 41-65 41-66 (128)
199 cd06346 PBP1_ABC_ligand_bindin 37.2 1.3E+02 0.0027 25.3 6.5 70 40-114 81-151 (312)
200 TIGR00737 nifR3_yhdG putative 36.9 1.1E+02 0.0024 26.5 6.2 20 87-106 148-167 (319)
201 KOG1541|consensus 36.9 41 0.00089 28.8 3.3 41 72-114 153-193 (270)
202 COG2927 HolC DNA polymerase II 36.7 77 0.0017 24.9 4.6 33 78-110 5-40 (144)
203 cd08572 GDPD_GDE5_like Glycero 36.6 1.4E+02 0.003 25.6 6.7 67 41-107 168-269 (293)
204 cd02911 arch_FMN Archeal FMN-b 36.6 1.1E+02 0.0025 25.4 6.0 38 73-112 73-110 (233)
205 PRK08185 hypothetical protein; 36.3 72 0.0016 27.7 4.8 24 168-191 182-205 (283)
206 cd08567 GDPD_SpGDE_like Glycer 36.1 1.3E+02 0.0028 24.8 6.3 70 41-110 152-242 (263)
207 COG1737 RpiR Transcriptional r 36.0 1.5E+02 0.0033 25.2 6.9 47 72-118 177-223 (281)
208 COG3147 DedD Uncharacterized p 35.8 44 0.00095 28.1 3.3 42 73-115 150-191 (226)
209 cd08607 GDPD_GDE5 Glycerophosp 35.7 97 0.0021 26.2 5.6 58 52-110 177-271 (290)
210 PRK08367 porA pyruvate ferredo 35.7 1.7E+02 0.0036 26.6 7.3 67 37-106 8-80 (394)
211 cd08610 GDPD_GDE6 Glycerophosp 35.7 38 0.00082 29.8 3.1 29 82-110 228-256 (316)
212 PF10903 DUF2691: Protein of u 35.7 1.1E+02 0.0024 24.3 5.4 33 75-108 111-144 (153)
213 PLN02826 dihydroorotate dehydr 35.6 28 0.00061 31.8 2.3 22 6-27 70-91 (409)
214 cd00958 DhnA Class I fructose- 35.5 1.9E+02 0.0041 23.5 7.2 22 84-105 192-213 (235)
215 PLN02245 ATP phosphoribosyl tr 35.4 1.9E+02 0.0042 26.5 7.6 61 46-106 298-381 (403)
216 COG1030 NfeD Membrane-bound se 35.4 48 0.001 30.6 3.7 33 86-120 43-75 (436)
217 PRK11730 fadB multifunctional 35.2 1.3E+02 0.0028 29.4 7.0 62 53-115 423-501 (715)
218 cd01940 Fructoselysine_kinase_ 35.2 1.9E+02 0.0042 23.5 7.2 71 40-110 128-198 (264)
219 PF03102 NeuB: NeuB family; I 35.2 39 0.00085 28.6 3.0 57 39-96 102-168 (241)
220 cd08604 GDPD_SHV3_repeat_2 Gly 34.9 1.4E+02 0.0031 25.8 6.5 71 39-110 154-261 (300)
221 PRK08195 4-hyroxy-2-oxovalerat 34.7 3.2E+02 0.007 24.1 9.2 49 62-110 90-139 (337)
222 PF04028 DUF374: Domain of unk 34.5 78 0.0017 21.8 3.9 56 35-115 19-74 (74)
223 PRK15408 autoinducer 2-binding 34.4 2.1E+02 0.0045 24.9 7.5 69 36-108 39-114 (336)
224 COG1879 RbsB ABC-type sugar tr 34.2 1.7E+02 0.0038 24.7 6.9 71 38-114 51-129 (322)
225 PRK06806 fructose-bisphosphate 33.9 99 0.0021 26.7 5.3 77 33-116 25-112 (281)
226 PRK07114 keto-hydroxyglutarate 33.9 68 0.0015 26.8 4.2 59 40-106 81-139 (222)
227 COG4195 Phage-related replicat 33.8 31 0.00067 28.5 2.0 45 78-122 115-160 (208)
228 PF01188 MR_MLE: Mandelate rac 33.8 46 0.00099 21.9 2.6 20 170-189 47-66 (67)
229 PRK09248 putative hydrolase; V 33.1 43 0.00092 27.8 2.9 25 86-110 19-43 (246)
230 PRK07709 fructose-bisphosphate 33.0 1.1E+02 0.0024 26.5 5.5 68 35-106 27-107 (285)
231 TIGR01303 IMP_DH_rel_1 IMP deh 33.0 1.5E+02 0.0032 27.7 6.6 54 7-69 31-84 (475)
232 PRK08659 2-oxoglutarate ferred 32.8 1.3E+02 0.0027 27.1 6.0 67 36-105 7-77 (376)
233 TIGR01858 tag_bisphos_ald clas 32.6 43 0.00094 29.0 2.9 24 168-191 184-207 (282)
234 PF01870 Hjc: Archaeal hollida 32.5 1.3E+02 0.0028 21.5 4.9 65 39-105 3-73 (88)
235 PRK14024 phosphoribosyl isomer 32.1 1.8E+02 0.004 24.1 6.6 64 41-109 66-131 (241)
236 PLN02617 imidazole glycerol ph 32.1 61 0.0013 30.7 4.0 33 75-107 423-459 (538)
237 TIGR03620 F420_MSMEG_4141 prob 31.9 53 0.0012 28.2 3.3 26 81-106 13-38 (278)
238 PRK12738 kbaY tagatose-bisphos 31.8 46 0.001 28.9 2.9 82 18-100 40-129 (286)
239 cd08606 GDPD_YPL110cp_fungi Gl 31.7 1.5E+02 0.0032 25.1 6.0 69 41-110 154-258 (286)
240 PF02737 3HCDH_N: 3-hydroxyacy 31.6 2.1E+02 0.0046 22.6 6.6 54 54-108 110-179 (180)
241 cd00452 KDPG_aldolase KDPG and 31.5 72 0.0016 25.4 3.9 54 44-105 70-123 (190)
242 TIGR03569 NeuB_NnaB N-acetylne 31.3 47 0.001 29.5 2.9 57 40-97 123-191 (329)
243 PRK02261 methylaspartate mutas 31.2 2E+02 0.0044 21.8 6.2 69 35-104 16-87 (137)
244 PF07338 DUF1471: Protein of u 31.2 85 0.0018 20.3 3.5 23 85-107 18-40 (56)
245 cd08571 GDPD_SHV3_plant Glycer 31.0 1.9E+02 0.004 25.1 6.6 70 38-111 151-263 (302)
246 COG1456 CdhE CO dehydrogenase/ 31.0 2.4E+02 0.0051 25.9 7.2 81 36-116 145-247 (467)
247 cd08575 GDPD_GDE4_like Glycero 31.0 1.2E+02 0.0027 25.4 5.4 24 87-110 219-242 (264)
248 cd08570 GDPD_YPL206cp_fungi Gl 30.8 88 0.0019 25.6 4.4 59 52-110 135-215 (234)
249 PRK07259 dihydroorotate dehydr 30.8 3.4E+02 0.0073 23.1 9.3 32 73-106 158-189 (301)
250 cd05008 SIS_GlmS_GlmD_1 SIS (S 30.5 76 0.0017 22.9 3.6 33 76-108 50-82 (126)
251 PRK00912 ribonuclease P protei 30.3 55 0.0012 27.0 3.1 24 85-108 15-38 (237)
252 cd00331 IGPS Indole-3-glycerol 30.1 98 0.0021 25.0 4.5 52 83-191 28-79 (217)
253 PRK11815 tRNA-dihydrouridine s 30.1 1.9E+02 0.0041 25.4 6.6 21 86-106 151-171 (333)
254 PLN02274 inosine-5'-monophosph 30.0 1.7E+02 0.0037 27.5 6.5 23 170-192 274-297 (505)
255 cd05014 SIS_Kpsf KpsF-like pro 30.0 70 0.0015 23.1 3.3 34 76-109 51-84 (128)
256 PRK08610 fructose-bisphosphate 29.9 53 0.0011 28.6 3.0 69 34-106 26-107 (286)
257 COG2102 Predicted ATPases of P 29.8 1.1E+02 0.0025 25.7 4.8 47 63-114 104-150 (223)
258 cd04743 NPD_PKS 2-Nitropropane 29.8 3.2E+02 0.007 24.2 7.9 57 41-106 73-130 (320)
259 cd08609 GDPD_GDE3 Glycerophosp 29.7 98 0.0021 27.1 4.7 71 39-110 173-256 (315)
260 TIGR03336 IOR_alpha indolepyru 29.5 2E+02 0.0042 27.4 7.0 68 37-107 6-77 (595)
261 PRK05835 fructose-bisphosphate 29.4 52 0.0011 29.0 2.9 24 168-191 188-211 (307)
262 PHA01807 hypothetical protein 29.3 87 0.0019 24.4 3.9 32 79-110 87-125 (153)
263 cd04729 NanE N-acetylmannosami 29.1 1.7E+02 0.0037 23.7 5.8 64 40-105 30-98 (219)
264 PRK05562 precorrin-2 dehydroge 29.0 3.4E+02 0.0074 22.6 8.3 90 19-112 15-121 (223)
265 TIGR00035 asp_race aspartate r 29.0 60 0.0013 26.7 3.1 71 46-126 30-100 (229)
266 cd01453 vWA_transcription_fact 29.0 1.5E+02 0.0033 23.4 5.4 9 51-59 110-118 (183)
267 TIGR01182 eda Entner-Doudoroff 28.9 97 0.0021 25.6 4.2 57 39-103 69-125 (204)
268 PRK07807 inosine 5-monophospha 28.8 1.8E+02 0.004 27.1 6.5 91 7-107 32-127 (479)
269 PRK06552 keto-hydroxyglutarate 28.8 1.2E+02 0.0025 25.1 4.7 58 40-105 78-135 (213)
270 TIGR02814 pfaD_fam PfaD family 28.8 3.1E+02 0.0067 25.5 7.9 86 12-105 12-106 (444)
271 COG3345 GalA Alpha-galactosida 28.8 1E+02 0.0023 29.7 4.8 44 75-120 298-341 (687)
272 COG2069 CdhD CO dehydrogenase/ 28.7 1.2E+02 0.0026 27.0 4.9 91 18-115 197-294 (403)
273 cd07020 Clp_protease_NfeD_1 No 28.6 91 0.002 24.8 4.0 28 84-111 14-41 (187)
274 COG0107 HisF Imidazoleglycerol 28.4 1.7E+02 0.0036 25.1 5.6 65 41-111 65-133 (256)
275 PRK06852 aldolase; Validated 28.2 2E+02 0.0044 25.3 6.3 67 40-106 191-265 (304)
276 PRK03972 ribosomal biogenesis 28.2 1.1E+02 0.0024 25.5 4.4 39 63-106 18-56 (208)
277 PRK09627 oorA 2-oxoglutarate-a 28.0 1.9E+02 0.0041 26.0 6.3 67 37-106 7-77 (375)
278 PF07905 PucR: Purine cataboli 28.0 1.2E+02 0.0027 22.3 4.4 60 49-108 19-81 (123)
279 PRK06015 keto-hydroxyglutarate 27.9 99 0.0022 25.4 4.1 59 40-106 66-124 (201)
280 PRK09195 gatY tagatose-bisphos 27.5 59 0.0013 28.2 2.9 24 168-191 186-209 (284)
281 PRK05286 dihydroorotate dehydr 27.5 1.4E+02 0.003 26.4 5.3 37 73-109 212-248 (344)
282 cd04738 DHOD_2_like Dihydrooro 27.4 1.4E+02 0.0031 26.0 5.3 35 73-107 203-237 (327)
283 COG3981 Predicted acetyltransf 27.0 1.2E+02 0.0027 24.5 4.4 36 87-122 118-153 (174)
284 TIGR03555 F420_mer 5,10-methyl 27.0 87 0.0019 27.1 3.9 25 84-108 10-34 (325)
285 PF05913 DUF871: Bacterial pro 27.0 79 0.0017 28.4 3.6 35 77-111 4-39 (357)
286 PRK08610 fructose-bisphosphate 26.9 1.6E+02 0.0034 25.6 5.4 24 168-191 187-210 (286)
287 PLN02706 glucosamine 6-phospha 26.8 1.1E+02 0.0024 22.6 4.0 25 86-110 105-129 (150)
288 PF05268 GP38: Phage tail fibr 26.7 26 0.00056 29.6 0.5 63 36-110 17-82 (260)
289 TIGR00186 rRNA_methyl_3 rRNA m 26.7 1.7E+02 0.0036 24.4 5.4 59 50-108 64-124 (237)
290 COG1489 SfsA DNA-binding prote 26.6 1.9E+02 0.004 24.6 5.6 28 84-112 191-218 (235)
291 COG1180 PflA Pyruvate-formate 26.5 4E+02 0.0086 22.5 8.1 90 29-120 91-193 (260)
292 cd08613 GDPD_GDE4_like_1 Glyce 26.5 53 0.0011 29.0 2.4 24 88-111 253-286 (309)
293 cd00953 KDG_aldolase KDG (2-ke 26.4 4E+02 0.0087 22.6 9.0 82 22-107 6-99 (279)
294 cd05006 SIS_GmhA Phosphoheptos 26.4 2.2E+02 0.0047 22.1 5.8 36 73-108 102-137 (177)
295 TIGR01856 hisJ_fam histidinol 26.2 67 0.0014 26.9 2.9 25 86-110 15-39 (253)
296 PRK12737 gatY tagatose-bisphos 26.2 68 0.0015 27.8 3.0 24 168-191 186-209 (284)
297 cd08210 RLP_RrRLP Ribulose bis 26.0 4.8E+02 0.01 23.4 8.7 72 40-113 144-230 (364)
298 cd04739 DHOD_like Dihydroorota 26.0 4.3E+02 0.0093 23.0 8.1 33 73-107 164-196 (325)
299 PRK07084 fructose-bisphosphate 25.9 1.4E+02 0.0031 26.5 5.0 68 35-106 33-115 (321)
300 TIGR00186 rRNA_methyl_3 rRNA m 25.8 1.8E+02 0.0038 24.2 5.4 77 30-109 95-173 (237)
301 PRK09140 2-dehydro-3-deoxy-6-p 25.8 66 0.0014 26.4 2.8 58 40-105 73-130 (206)
302 PRK00048 dihydrodipicolinate r 25.8 1.7E+02 0.0038 24.5 5.4 38 32-69 66-105 (257)
303 PRK13936 phosphoheptose isomer 25.8 2.4E+02 0.0051 22.7 6.0 36 73-108 112-147 (197)
304 COG0107 HisF Imidazoleglycerol 25.3 1.3E+02 0.0028 25.7 4.4 34 74-107 139-176 (256)
305 cd07945 DRE_TIM_CMS Leptospira 25.2 2.8E+02 0.0061 23.8 6.7 74 38-113 78-173 (280)
306 PRK07328 histidinol-phosphatas 25.2 75 0.0016 26.8 3.1 26 86-111 18-43 (269)
307 PLN02746 hydroxymethylglutaryl 25.1 2.5E+02 0.0054 25.1 6.5 29 84-113 195-223 (347)
308 cd05710 SIS_1 A subgroup of th 25.1 1.9E+02 0.0041 21.0 4.9 37 73-109 48-84 (120)
309 PRK13477 bifunctional pantoate 25.1 1.6E+02 0.0034 27.9 5.4 66 22-105 21-90 (512)
310 cd08561 GDPD_cytoplasmic_ScUgp 24.9 2.2E+02 0.0049 23.4 5.9 70 41-110 123-223 (249)
311 KOG3425|consensus 24.8 3.2E+02 0.007 21.0 6.5 40 87-129 50-92 (128)
312 PF07745 Glyco_hydro_53: Glyco 24.7 1.2E+02 0.0027 26.9 4.4 62 43-107 9-78 (332)
313 PRK09140 2-dehydro-3-deoxy-6-p 24.7 1.7E+02 0.0036 24.0 4.9 14 168-181 184-197 (206)
314 cd07900 Adenylation_DNA_ligase 24.6 2.1E+02 0.0047 23.4 5.6 38 78-115 167-208 (219)
315 COG0800 Eda 2-keto-3-deoxy-6-p 24.4 96 0.0021 25.9 3.4 54 33-86 89-142 (211)
316 cd05017 SIS_PGI_PMI_1 The memb 24.3 2E+02 0.0043 20.8 4.9 37 74-110 45-81 (119)
317 cd05013 SIS_RpiR RpiR-like pro 24.2 2.7E+02 0.0058 19.8 7.0 37 73-109 61-97 (139)
318 cd06338 PBP1_ABC_ligand_bindin 24.2 4.3E+02 0.0094 22.2 7.8 71 39-115 84-156 (345)
319 PLN02347 GMP synthetase 24.2 2E+02 0.0044 27.2 6.0 64 53-118 209-273 (536)
320 PRK02947 hypothetical protein; 24.1 3.6E+02 0.0077 22.5 7.0 36 74-109 108-143 (246)
321 PRK02083 imidazole glycerol ph 24.1 3.2E+02 0.007 22.6 6.7 20 87-106 154-173 (253)
322 TIGR03217 4OH_2_O_val_ald 4-hy 23.9 5E+02 0.011 22.8 8.9 48 62-109 89-137 (333)
323 PF09413 DUF2007: Domain of un 23.9 68 0.0015 20.9 2.1 54 38-95 10-65 (67)
324 PRK08309 short chain dehydroge 23.9 1.1E+02 0.0023 24.4 3.6 28 32-59 81-115 (177)
325 cd04724 Tryptophan_synthase_al 23.9 88 0.0019 26.1 3.2 25 83-107 11-35 (242)
326 PRK06740 histidinol-phosphatas 23.8 2.3E+02 0.0051 24.9 6.0 46 41-105 275-320 (331)
327 TIGR02764 spore_ybaN_pdaB poly 23.6 1.1E+02 0.0024 24.1 3.6 67 41-110 49-131 (191)
328 cd04743 NPD_PKS 2-Nitropropane 23.6 4E+02 0.0087 23.6 7.4 85 20-110 2-93 (320)
329 PRK12857 fructose-1,6-bisphosp 23.6 82 0.0018 27.4 3.0 24 168-191 186-209 (284)
330 TIGR03856 F420_MSMEG_2906 prob 23.3 1E+02 0.0022 25.9 3.5 26 84-110 14-39 (249)
331 cd02126 PA_EDEM3_like PA_EDEM3 23.3 80 0.0017 23.6 2.6 20 89-108 54-73 (126)
332 COG3153 Predicted acetyltransf 23.3 1.3E+02 0.0029 24.1 4.0 40 73-112 72-121 (171)
333 PF00583 Acetyltransf_1: Acety 23.2 79 0.0017 20.4 2.3 25 86-110 45-69 (83)
334 cd07901 Adenylation_DNA_ligase 23.0 3.3E+02 0.0072 21.8 6.4 37 80-116 160-198 (207)
335 PRK10200 putative racemase; Pr 23.0 74 0.0016 26.4 2.6 39 86-126 62-100 (230)
336 TIGR00381 cdhD CO dehydrogenas 23.0 2.7E+02 0.0058 25.5 6.2 92 18-115 186-283 (389)
337 cd08564 GDPD_GsGDE_like Glycer 22.9 4.5E+02 0.0097 21.9 7.6 67 40-106 136-230 (265)
338 PRK13937 phosphoheptose isomer 22.9 2.9E+02 0.0064 21.9 6.0 36 73-108 107-142 (188)
339 PF01113 DapB_N: Dihydrodipico 22.8 1E+02 0.0022 22.8 3.1 38 33-70 74-113 (124)
340 cd07948 DRE_TIM_HCS Saccharomy 22.8 3.5E+02 0.0077 22.9 6.8 31 83-114 138-168 (262)
341 cd07943 DRE_TIM_HOA 4-hydroxy- 22.7 2.7E+02 0.0059 23.3 6.0 70 39-109 90-163 (263)
342 KOG1436|consensus 22.7 25 0.00054 31.5 -0.3 21 7-27 81-101 (398)
343 PRK10886 DnaA initiator-associ 22.6 2.7E+02 0.0059 22.6 5.8 36 73-108 110-145 (196)
344 PRK06849 hypothetical protein; 22.5 2.8E+02 0.0061 24.4 6.4 68 39-109 17-86 (389)
345 cd07938 DRE_TIM_HMGL 3-hydroxy 22.5 4.8E+02 0.01 22.1 7.7 41 62-102 75-130 (274)
346 cd00138 PLDc Phospholipase D. 22.5 2.9E+02 0.0064 20.8 5.8 39 74-113 36-80 (176)
347 TIGR00441 gmhA phosphoheptose 22.5 2.8E+02 0.006 21.2 5.6 34 74-107 81-114 (154)
348 TIGR02440 FadJ fatty oxidation 22.3 3E+02 0.0064 26.9 6.9 61 54-115 416-493 (699)
349 PRK00278 trpC indole-3-glycero 22.3 3.3E+02 0.0072 23.0 6.5 64 40-109 73-143 (260)
350 COG0042 tRNA-dihydrouridine sy 22.3 4.7E+02 0.01 22.9 7.6 90 15-111 5-104 (323)
351 PF13362 Toprim_3: Toprim doma 22.3 2.1E+02 0.0046 19.8 4.5 50 54-107 23-79 (96)
352 cd08566 GDPD_AtGDE_like Glycer 22.3 3.9E+02 0.0085 22.0 6.8 71 40-110 113-208 (240)
353 PRK08392 hypothetical protein; 22.2 91 0.002 25.3 2.9 25 86-110 14-38 (215)
354 cd08562 GDPD_EcUgpQ_like Glyce 22.2 3.6E+02 0.0079 21.5 6.5 69 42-110 121-210 (229)
355 PF01380 SIS: SIS domain SIS d 22.1 1.4E+02 0.003 21.3 3.7 31 79-109 60-90 (131)
356 cd08608 GDPD_GDE2 Glycerophosp 22.1 79 0.0017 28.3 2.7 29 85-113 209-237 (351)
357 cd04734 OYE_like_3_FMN Old yel 22.1 5.4E+02 0.012 22.6 9.4 23 169-191 270-292 (343)
358 PRK08318 dihydropyrimidine deh 22.0 4.3E+02 0.0094 23.7 7.5 32 73-106 169-200 (420)
359 PF02065 Melibiase: Melibiase; 22.0 34 0.00073 31.1 0.3 41 76-118 48-88 (394)
360 PRK07066 3-hydroxybutyryl-CoA 22.0 4.4E+02 0.0095 23.1 7.3 67 48-115 110-193 (321)
361 TIGR03612 RutA pyrimidine util 22.0 1.1E+02 0.0023 27.1 3.5 23 84-106 26-48 (355)
362 TIGR01036 pyrD_sub2 dihydrooro 21.9 1.8E+02 0.004 25.6 5.0 35 73-107 211-245 (335)
363 PF13407 Peripla_BP_4: Peripla 21.9 1.3E+02 0.0029 24.0 3.9 71 34-108 12-89 (257)
364 TIGR03842 F420_CPS_4043 F420-d 21.9 1.3E+02 0.0028 26.1 4.0 23 84-106 11-33 (330)
365 PF13580 SIS_2: SIS domain; PD 21.9 2.6E+02 0.0057 20.9 5.3 34 73-106 104-137 (138)
366 TIGR03857 F420_MSMEG_2249 prob 21.8 1.1E+02 0.0024 26.8 3.5 25 83-107 11-35 (329)
367 PRK13398 3-deoxy-7-phosphohept 21.7 2.6E+02 0.0056 23.9 5.7 30 40-69 124-153 (266)
368 cd01994 Alpha_ANH_like_IV This 21.7 3.3E+02 0.0071 21.9 6.1 15 43-57 51-65 (194)
369 PRK07084 fructose-bisphosphate 21.6 1E+02 0.0022 27.4 3.2 25 168-192 200-225 (321)
370 PF03738 GSP_synth: Glutathion 21.6 90 0.002 22.1 2.5 32 83-116 12-43 (97)
371 cd05009 SIS_GlmS_GlmD_2 SIS (S 21.6 2.1E+02 0.0046 21.0 4.7 27 83-109 73-99 (153)
372 PF06574 FAD_syn: FAD syntheta 21.5 1.4E+02 0.003 23.3 3.7 26 85-110 22-47 (157)
373 cd06345 PBP1_ABC_ligand_bindin 21.5 3.2E+02 0.007 23.1 6.4 74 40-115 81-159 (344)
374 TIGR03586 PseI pseudaminic aci 21.4 92 0.002 27.6 3.0 22 82-103 13-34 (327)
375 TIGR02437 FadB fatty oxidation 21.3 3.2E+02 0.007 26.8 6.9 61 54-115 424-501 (714)
376 COG4639 Predicted kinase [Gene 21.3 1.6E+02 0.0034 23.8 3.9 30 82-111 78-107 (168)
377 PF02225 PA: PA domain; Inter 21.3 90 0.0019 21.5 2.4 19 89-107 47-65 (101)
378 PF08442 ATP-grasp_2: ATP-gras 21.2 1.6E+02 0.0035 24.1 4.2 50 50-101 119-169 (202)
379 PRK14114 1-(5-phosphoribosyl)- 21.2 3.8E+02 0.0082 22.4 6.5 53 51-109 74-128 (241)
380 cd00308 enolase_like Enolase-s 21.2 4.5E+02 0.0097 21.2 7.2 63 40-103 135-200 (229)
381 cd06366 PBP1_GABAb_receptor Li 21.1 4E+02 0.0087 22.5 6.9 70 40-115 80-150 (350)
382 PRK13938 phosphoheptose isomer 21.0 3.4E+02 0.0073 22.0 6.0 36 73-108 114-149 (196)
383 PRK00278 trpC indole-3-glycero 21.0 1.4E+02 0.0031 25.2 4.0 77 19-106 110-187 (260)
384 TIGR01575 rimI ribosomal-prote 21.0 1.6E+02 0.0034 20.6 3.7 38 87-124 75-112 (131)
385 cd08582 GDPD_like_2 Glyceropho 20.9 2.6E+02 0.0056 22.7 5.4 71 40-110 118-212 (233)
386 cd00947 TBP_aldolase_IIB Tagat 20.8 99 0.0021 26.7 3.0 24 168-191 180-203 (276)
387 TIGR01302 IMP_dehydrog inosine 20.8 4.8E+02 0.01 23.9 7.6 94 6-109 19-120 (450)
388 TIGR01588 citE citrate lyase, 20.8 1.2E+02 0.0026 26.1 3.5 37 79-118 7-43 (288)
389 cd07372 2A5CPDO_B The beta sub 20.7 2.6E+02 0.0057 24.2 5.6 67 40-107 40-120 (294)
390 cd00945 Aldolase_Class_I Class 20.6 1.2E+02 0.0027 23.2 3.3 24 84-107 11-34 (201)
391 cd00952 CHBPH_aldolase Trans-o 20.6 5.6E+02 0.012 22.1 8.7 73 34-107 26-111 (309)
392 cd03317 NAAAR N-acylamino acid 20.6 3.6E+02 0.0077 23.5 6.5 63 40-103 218-283 (354)
393 PRK09701 D-allose transporter 20.6 3E+02 0.0066 23.1 6.0 15 40-54 44-58 (311)
394 cd04301 NAT_SF N-Acyltransfera 20.5 1.6E+02 0.0035 16.8 3.2 21 86-106 45-65 (65)
395 TIGR03854 F420_MSMEG_3544 prob 20.5 1.2E+02 0.0027 25.9 3.5 26 83-109 10-35 (290)
396 COG4221 Short-chain alcohol de 20.4 3.6E+02 0.0078 23.1 6.2 69 40-108 20-90 (246)
397 COG0279 GmhA Phosphoheptose is 20.3 3.3E+02 0.0071 22.1 5.6 49 61-109 93-146 (176)
398 PRK13957 indole-3-glycerol-pho 20.3 95 0.0021 26.5 2.7 21 172-192 90-110 (247)
399 PRK09389 (R)-citramalate synth 20.3 6.6E+02 0.014 23.4 8.5 47 37-83 50-96 (488)
400 cd06326 PBP1_STKc_like Type I 20.3 3.9E+02 0.0086 22.2 6.6 61 42-108 84-144 (336)
401 PRK05718 keto-hydroxyglutarate 20.2 2.6E+02 0.0057 23.0 5.3 64 41-113 78-141 (212)
402 cd07937 DRE_TIM_PC_TC_5S Pyruv 20.2 4.9E+02 0.011 22.0 7.2 40 63-102 94-134 (275)
403 PRK07535 methyltetrahydrofolat 20.0 2.9E+02 0.0064 23.4 5.7 65 40-106 79-160 (261)
404 TIGR03560 F420_Rv1855c probabl 20.0 1.2E+02 0.0027 24.9 3.3 27 82-109 9-35 (227)
No 1
>KOG0538|consensus
Probab=100.00 E-value=2.5e-63 Score=422.42 Aligned_cols=184 Identities=47% Similarity=0.787 Sum_probs=171.8
Q ss_pred CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY 80 (193)
Q Consensus 1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY 80 (193)
+|+||+.+|+||++||+++++||+|||||+|+|+|||||.++||||+++|++|++||+|++|+|||++++|.+.+|||||
T Consensus 49 ~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qkma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLY 128 (363)
T KOG0538|consen 49 ILRDVSKIDTSTTVLGQKISAPIMIAPTAMQKMAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLY 128 (363)
T ss_pred hheecccccccceeccccccceeEEcchHHHhccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchh
Q psy13219 81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLT 160 (193)
Q Consensus 81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
+++||+++++|++|||++||||||||||+|++|+|+.|+||+|++|.+++++|+....... ..+ .+.++..
T Consensus 129 vykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~--------v~~-~~~sg~~ 199 (363)
T KOG0538|consen 129 VYKDRDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTE--------VEE-AGDSGLA 199 (363)
T ss_pred ecCchHHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCccccccccccccccc--------CCc-ccchhhh
Confidence 9999999999999999999999999999999999999999999999999999987543211 111 2467788
Q ss_pred hHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219 161 DYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP 193 (193)
Q Consensus 161 ~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~ 193 (193)
.+...++|++++|+||+|||++|+||||||||.
T Consensus 200 ~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGil 232 (363)
T KOG0538|consen 200 AYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVL 232 (363)
T ss_pred hhhhcCCCCCCChhhhHHHHhcCcCCeEEEeec
Confidence 899999999999999999999999999999985
No 2
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=100.00 E-value=2.7e-57 Score=400.04 Aligned_cols=183 Identities=46% Similarity=0.726 Sum_probs=162.5
Q ss_pred CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY 80 (193)
Q Consensus 1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY 80 (193)
||+||+++||+|++||+++++||+|||+|+++|+||+||+++||||+++|++|++||+||+|+|||+++. +++.|||||
T Consensus 51 vLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~-~~~~wfQlY 129 (367)
T PLN02493 51 ILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTG-PGIRFFQLY 129 (367)
T ss_pred cccCCCCCCCceEECCccccccceechHHHHhhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcC-CCCcEEEEe
Confidence 6999999999999999999999999999999999999999999999999999999999999999999874 468999999
Q ss_pred eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchh
Q psy13219 81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLT 160 (193)
Q Consensus 81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
+++||+++++||+|||+|||+|||||||+|+.|+||+|+||+|.+|.+++++++....... . ......+..
T Consensus 130 ~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~--------~-~~~~~~~~~ 200 (367)
T PLN02493 130 VYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGK--------M-DEANDSGLA 200 (367)
T ss_pred ecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccC--------C-CcccchhHH
Confidence 9999999999999999999999999999999999999999999999888777653311000 0 001123455
Q ss_pred hHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219 161 DYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP 193 (193)
Q Consensus 161 ~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~ 193 (193)
.++..++++++||+||+|||+.|++|||||||+
T Consensus 201 ~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~ 233 (367)
T PLN02493 201 SYVAGQIDRTLSWKDVQWLQTITKLPILVKGVL 233 (367)
T ss_pred HHHhhcCCCCCCHHHHHHHHhccCCCEEeecCC
Confidence 577778899999999999999999999999995
No 3
>PLN02979 glycolate oxidase
Probab=100.00 E-value=5.4e-57 Score=396.24 Aligned_cols=183 Identities=46% Similarity=0.726 Sum_probs=163.1
Q ss_pred CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY 80 (193)
Q Consensus 1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY 80 (193)
+|+||+++||+|++||+++++||+|||+|+++|+|||||+++||||+++|++|++||+|++|+|||+++. +++.|||||
T Consensus 50 vLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~-~~~~wfQLY 128 (366)
T PLN02979 50 ILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTG-PGIRFFQLY 128 (366)
T ss_pred cccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhcc-CCCeEEEEe
Confidence 6899999999999999999999999999999999999999999999999999999999999999999874 468999999
Q ss_pred eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchh
Q psy13219 81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLT 160 (193)
Q Consensus 81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
+++||+.+++||+|||+|||+||+||||+|+.|+||+|+||+|++|++++++++....... . ......+..
T Consensus 129 ~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~--------~-~~~~~~~~~ 199 (366)
T PLN02979 129 VYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGK--------M-DEANDSGLA 199 (366)
T ss_pred ecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccC--------C-CcccchhHH
Confidence 9999999999999999999999999999999999999999999999888777764321100 0 001223455
Q ss_pred hHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219 161 DYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP 193 (193)
Q Consensus 161 ~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~ 193 (193)
.+....+++++||+||+|||+.|++|||||||+
T Consensus 200 ~~~~~~~~~~ltW~dl~wlr~~~~~PvivKgV~ 232 (366)
T PLN02979 200 SYVAGQIDRTLSWKDVQWLQTITKLPILVKGVL 232 (366)
T ss_pred HHHhhcCCCCCCHHHHHHHHhccCCCEEeecCC
Confidence 577778899999999999999999999999985
No 4
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=5.5e-56 Score=393.61 Aligned_cols=191 Identities=28% Similarity=0.499 Sum_probs=163.7
Q ss_pred CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY 80 (193)
Q Consensus 1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY 80 (193)
+|+||+++||+|+|||+++++||+|||+|+++++||+||+++||||+++|++|++||.|++|+|||+++. +++.|||||
T Consensus 51 ~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~-~~~~wfQlY 129 (381)
T PRK11197 51 VLKDMSDLSLETTLFGEKLSMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAI-KRPMWFQLY 129 (381)
T ss_pred cccCCCCCCCceEECCcccccchhhChHHHhhccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhcc-CCCeEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999874 468999999
Q ss_pred eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcc---------cchhhcccc
Q psy13219 81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNE---------DISKFRDIS 151 (193)
Q Consensus 81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~---------~~~~~~~~~ 151 (193)
+++||+.++++|+|||+|||+|||||||+|+.|+||+|+||+|++|+. +++++.+...+|. +.+.+.|..
T Consensus 130 ~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~-~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~ 208 (381)
T PRK11197 130 VLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNA-AMRRYLQAVTHPQWAWDVGLNGRPHDLGNIS 208 (381)
T ss_pred ecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCc-hhhhHHhhhcCchhhhhhccccCCCcccccc
Confidence 999999999999999999999999999999999999999999999863 6666554333331 112233321
Q ss_pred c----ccCCcchhhHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219 152 A----EECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP 193 (193)
Q Consensus 152 ~----~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~ 193 (193)
. ..+......+....+++++|||||+|||+.|++|||+|||+
T Consensus 209 ~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~lr~~~~~pvivKgV~ 254 (381)
T PRK11197 209 AYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGIL 254 (381)
T ss_pred cccccccchhHHHHHHHhccCCCCCHHHHHHHHHhCCCCEEEEecC
Confidence 1 01122234466778899999999999999999999999984
No 5
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=6.9e-56 Score=390.62 Aligned_cols=191 Identities=29% Similarity=0.473 Sum_probs=166.2
Q ss_pred CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY 80 (193)
Q Consensus 1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY 80 (193)
||+||+++||+|++||+++++||+|||+|+++|+||+||+++||||+++|++|++||+|++|+|||+++.+ ++.|||||
T Consensus 45 vLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~-~~~wfQLY 123 (361)
T cd04736 45 RLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNMSIEDVARQAD-GDLWFQLY 123 (361)
T ss_pred ccCCCCCCCCceeECCccccccccccHHHHHhccCCcHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcC-CCeEEEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999998854 68999999
Q ss_pred eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcc--------cchhhccccc
Q psy13219 81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNE--------DISKFRDISA 152 (193)
Q Consensus 81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 152 (193)
++ ||+++++||+|||+|||+|||||||+|+.|+||+|+||+|.+|++++++++.+...+|. +.+.+.|...
T Consensus 124 ~~-~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~ 202 (361)
T cd04736 124 VV-HRELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFAS 202 (361)
T ss_pred ec-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhccccccccccccc
Confidence 97 59999999999999999999999999999999999999999999999888776655541 1222322211
Q ss_pred c--cCCcchhhHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219 153 E--ECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP 193 (193)
Q Consensus 153 ~--~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~ 193 (193)
. ....+...++...++++++|++|+|||+.|++|+|+|||+
T Consensus 203 ~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiKgV~ 245 (361)
T cd04736 203 DDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVKGIV 245 (361)
T ss_pred ccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEecCC
Confidence 0 1112244566667899999999999999999999999985
No 6
>PLN02535 glycolate oxidase
Probab=100.00 E-value=1.2e-54 Score=383.29 Aligned_cols=180 Identities=42% Similarity=0.709 Sum_probs=158.2
Q ss_pred CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY 80 (193)
Q Consensus 1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY 80 (193)
+|+||+++||+|++||+++++||+|||+|+++|+||+||+++||||+++|++|++||+|++|+|||+++. +++.|||||
T Consensus 53 ~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~-~~~~wfQlY 131 (364)
T PLN02535 53 VLVDVSKIDMSTTILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSC-NAVRFLQLY 131 (364)
T ss_pred cccCCCCCCCceEECCccccccceechHHHhcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcC-CCCeEEEEe
Confidence 6999999999999999999999999999999999999999999999999999999999999999999874 578999999
Q ss_pred eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchh
Q psy13219 81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLT 160 (193)
Q Consensus 81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
+++||++++++|+|||+|||+|||||||+|+.|+||+|+||+|.+|. .+++....... ... ....+..
T Consensus 132 ~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~---~~~~~~~~~~~--------~~~-~~~~~~~ 199 (364)
T PLN02535 132 VYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQ---LKNFEGLLSTE--------VVS-DKGSGLE 199 (364)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcc---hhhHhhhhccC--------CCc-cccccHH
Confidence 99999999999999999999999999999999999999999999883 33432211110 000 1223455
Q ss_pred hHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219 161 DYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP 193 (193)
Q Consensus 161 ~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~ 193 (193)
.+....+++++||+||+|||+.|++||+||||.
T Consensus 200 ~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~ 232 (364)
T PLN02535 200 AFASETFDASLSWKDIEWLRSITNLPILIKGVL 232 (364)
T ss_pred HHHHhccCCCCCHHHHHHHHhccCCCEEEecCC
Confidence 677778899999999999999999999999984
No 7
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=100.00 E-value=1.8e-53 Score=378.03 Aligned_cols=189 Identities=35% Similarity=0.541 Sum_probs=156.1
Q ss_pred CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY 80 (193)
Q Consensus 1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY 80 (193)
+|+||+++||+|+|||+++++||+|||+|+++++||+||+++||||+++|++|++||.|++|+|||+++.++++.|||||
T Consensus 66 vL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY 145 (383)
T cd03332 66 MLRGVTERDLSVELFGRTLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLY 145 (383)
T ss_pred ccccCCCCCCceeeCCccccccceechHHHHHhcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEee
Confidence 68999999999999999999999999999999999999999999999999999999999999999998866678999999
Q ss_pred eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCc--cchhhhhccccCcccchhhccc--ccc---
Q psy13219 81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPY--LSLANFRNLKQHNEDISKFRDI--SAE--- 153 (193)
Q Consensus 81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~--~~~--- 153 (193)
+++||++++++|+|||+|||+|||||||+|+.|+||+|+||+| .|.. .++.++.. .|.....+.+. ...
T Consensus 146 ~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~-~p~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 221 (383)
T cd03332 146 WPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGY-LPFLRGIGIANYFS---DPVFRKKLAEPVGEDPEAP 221 (383)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCC-CCCccccchhhhhc---cchhhhccccCCCCCcccc
Confidence 9999999999999999999999999999999999999999999 4532 22222111 11000001000 000
Q ss_pred -cCCcchhhHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219 154 -ECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP 193 (193)
Q Consensus 154 -~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~ 193 (193)
........+...++++++||++|+|||+.|++|||+|||+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pvivKgV~ 262 (383)
T cd03332 222 PPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPIVLKGIL 262 (383)
T ss_pred cccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCEEEecCC
Confidence 0112334455566799999999999999999999999985
No 8
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=100.00 E-value=9.3e-53 Score=371.45 Aligned_cols=177 Identities=28% Similarity=0.463 Sum_probs=153.0
Q ss_pred CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY 80 (193)
Q Consensus 1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY 80 (193)
+|+||+++||+|+|||+++++||+|||+|+++|+||+||+++||||+++|++|++||.|++|+|||+++.++++.|||||
T Consensus 61 ~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY 140 (367)
T TIGR02708 61 LLQDVENPSTEIEFLGHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFY 140 (367)
T ss_pred cccCCCCCCCceeeCCcccccccccCcHHHhhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999998755678999999
Q ss_pred eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchh
Q psy13219 81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLT 160 (193)
Q Consensus 81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
+++||++++++|+|||++||+|||||||+|+.|+||+|+||+|.+|..+...+ .....+ . ....
T Consensus 141 ~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~--~~~~~~------------~-~~~~- 204 (367)
T TIGR02708 141 MSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQ--EYLPTG------------A-GKSM- 204 (367)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhh--hhcccC------------C-ccch-
Confidence 99999999999999999999999999999999999999999999885443322 110000 0 0000
Q ss_pred hHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219 161 DYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP 193 (193)
Q Consensus 161 ~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~ 193 (193)
..+....++.++|++|+|||+.|++||+||||+
T Consensus 205 ~~~~~~~~~~~~w~~i~~l~~~~~~PvivKGv~ 237 (367)
T TIGR02708 205 DNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQ 237 (367)
T ss_pred hhhccccCCCCCHHHHHHHHHhcCCCEEEeCCC
Confidence 111223468999999999999999999999985
No 9
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=1.3e-50 Score=356.68 Aligned_cols=178 Identities=30% Similarity=0.493 Sum_probs=154.9
Q ss_pred CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY 80 (193)
Q Consensus 1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY 80 (193)
||+||+++||+|++||+++++||+|||+|+++|+||+||+++||||+++|++|++|+.|++|+|||+++.++++.|||||
T Consensus 53 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY 132 (351)
T cd04737 53 VLQGVESPDTSTELLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLY 132 (351)
T ss_pred hccCCCCCCCceEeCCccccchhhhHHHHHHHhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999998865679999999
Q ss_pred eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchh
Q psy13219 81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLT 160 (193)
Q Consensus 81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
+++|+++++++|+|||++||++|+||||+|+.|+||+|+||+|.+|..++..+...... + ...+..
T Consensus 133 ~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~-~-------------~~~~~~ 198 (351)
T cd04737 133 MSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGT-G-------------KGKGIS 198 (351)
T ss_pred ecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhcccc-c-------------cCcchh
Confidence 99999999999999999999999999999999999999999999986655433221100 0 000111
Q ss_pred hHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219 161 DYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP 193 (193)
Q Consensus 161 ~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~ 193 (193)
.....+++++||++|+|||+.|++||++|||.
T Consensus 199 -~~~~~~~~~~~~~~l~~lr~~~~~PvivKgv~ 230 (351)
T cd04737 199 -EIYAAAKQKLSPADIEFIAKISGLPVIVKGIQ 230 (351)
T ss_pred -hhhhhccCCCCHHHHHHHHHHhCCcEEEecCC
Confidence 11234678899999999999999999999984
No 10
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=100.00 E-value=6.4e-50 Score=353.38 Aligned_cols=192 Identities=38% Similarity=0.607 Sum_probs=166.2
Q ss_pred CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY 80 (193)
Q Consensus 1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY 80 (193)
+|+|++++||+|+|||+++++||+|||+|+++++||++|.++||||+++|++|++||.++.++|||+++.+ ++.|||||
T Consensus 39 vL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~Gi~~~lss~s~~~~e~ia~~~~-~~~~~Qly 117 (356)
T PF01070_consen 39 VLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAGIPMMLSSQSSASLEEIAAASG-GPLWFQLY 117 (356)
T ss_dssp SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHTSEEEEETTCSSCHHHHHHHCT-SEEEEEEE
T ss_pred ccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHHHHHHhccCcceeccCCccCCHHHHHhhcc-CCeEEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999876 78999999
Q ss_pred eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcc-cchhhccc---ccccCC
Q psy13219 81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNE-DISKFRDI---SAEECS 156 (193)
Q Consensus 81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~ 156 (193)
+++|++.+.++++|||++||+||+||||+|+.|+||+|.||+|++|++++.+++.+...+|. ..+.+.+. ......
T Consensus 118 ~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 197 (356)
T PF01070_consen 118 PPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNG 197 (356)
T ss_dssp GBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTST
T ss_pred EecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccccccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999887776652 12222221 111223
Q ss_pred cchhhHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219 157 SGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP 193 (193)
Q Consensus 157 ~~~~~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~ 193 (193)
.....+....+++.++|++|+|||+.|++|||||||+
T Consensus 198 ~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~ 234 (356)
T PF01070_consen 198 AAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVL 234 (356)
T ss_dssp CHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-
T ss_pred hhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecc
Confidence 3445677778899999999999999999999999984
No 11
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=100.00 E-value=7.1e-49 Score=345.21 Aligned_cols=177 Identities=36% Similarity=0.545 Sum_probs=157.4
Q ss_pred CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhh-CCCCceEEEE
Q psy13219 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQ-NPSTTLWLQM 79 (193)
Q Consensus 1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~-~~~~~~wfQl 79 (193)
+|+|++++||+|++||+++++||+|||||+++++||+||+++||||+++|++|++||++++|+|||+++ .++++.||||
T Consensus 45 ~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Ql 124 (344)
T cd02922 45 VLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQL 124 (344)
T ss_pred ccCCCCCCCCceEECCcccCCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEE
Confidence 689999999999999999999999999999999999999999999999999999999999999999887 4567999999
Q ss_pred EeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcch
Q psy13219 80 YIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGL 159 (193)
Q Consensus 80 Y~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (193)
|+++|++.++++++|||++||+||+||||+|+.|+||+|+||+|.+|.+++.++.... ....+.
T Consensus 125 y~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~----------------~~~~~~ 188 (344)
T cd02922 125 YVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTK----------------AKGGGA 188 (344)
T ss_pred eecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccc----------------cccchH
Confidence 9999999999999999999999999999999999999999999999876655442110 011123
Q ss_pred hhHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219 160 TDYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP 193 (193)
Q Consensus 160 ~~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~ 193 (193)
..++...+++..+|++|+|||+.|++||+||||.
T Consensus 189 ~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~ 222 (344)
T cd02922 189 GRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQ 222 (344)
T ss_pred HHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCC
Confidence 3355556789999999999999999999999984
No 12
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=100.00 E-value=4.3e-38 Score=277.75 Aligned_cols=183 Identities=30% Similarity=0.401 Sum_probs=163.5
Q ss_pred CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY 80 (193)
Q Consensus 1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY 80 (193)
+|.+++++|++|++||+++++||+||||++++|+|++||...|++|.++|+++++|+.+|+++||+.+..+ ||+|
T Consensus 45 ~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~-----~q~y 119 (360)
T COG1304 45 VLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAHPEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP-----FQLY 119 (360)
T ss_pred cCCCcccCccceEecCccccCCEEEeccccccccChhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcc-----hhhh
Confidence 58899999999999999999999999999999999999999999999999999999999999999987643 9999
Q ss_pred eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchh
Q psy13219 81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLT 160 (193)
Q Consensus 81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
+.+||+.+.++++||+++||++|++|||+|+.|+|++|.+|++..|+.....|+.+....|.+...+.. ....+.
T Consensus 120 ~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~~d~~~~i~a~~~~~h~n~~qe~~~p~g~~~~~~-----~~~~i~ 194 (360)
T COG1304 120 FSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERERDAVNGISAPALAIHLNVLQEATQPEGDRDGKG-----GLDSIA 194 (360)
T ss_pred hHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHHHHHHhccCCCcccccccHHHHhcCCcccccccc-----hhhHHH
Confidence 999999999999999999999999999999999999999999999988888888876665521111110 111456
Q ss_pred hHhhhhCCCCCCHHHHHHHHhcCCCCEEEecCC
Q psy13219 161 DYVANQFDDSVDWDDVRSLVQATKLPIVCKGIP 193 (193)
Q Consensus 161 ~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI~ 193 (193)
.+.+...+|.++|||++||++.|.+|+++|||+
T Consensus 195 ~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~ 227 (360)
T COG1304 195 EYVSALSVPVISKEDGAGISKEWAGPLVLKGIL 227 (360)
T ss_pred HHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCC
Confidence 677788899999999999999999999999996
No 13
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.93 E-value=1.7e-25 Score=193.51 Aligned_cols=136 Identities=48% Similarity=0.780 Sum_probs=126.2
Q ss_pred CCcCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEE
Q psy13219 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY 80 (193)
Q Consensus 1 vL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY 80 (193)
+|++++++||+|++||++++.||+||||++.++.|+++|.++|++|.++|+++++|++++.++|++.+..+ ++.|+|||
T Consensus 45 ~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~-~~~~~ql~ 123 (299)
T cd02809 45 VLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAP-GPRWFQLY 123 (299)
T ss_pred cCCCCCCCCCceEECCeecCCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcC-CCeEEEEe
Confidence 47889999999999999999999999999998899999999999999999999999999999999998766 78999999
Q ss_pred eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchh
Q psy13219 81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLT 160 (193)
Q Consensus 81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (193)
...|++.+.++++++++.|+++|.+++|+|..|.|
T Consensus 124 ~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~--------------------------------------------- 158 (299)
T cd02809 124 VPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR--------------------------------------------- 158 (299)
T ss_pred ecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC---------------------------------------------
Confidence 99899999999999999999999999999854333
Q ss_pred hHhhhhCCCCCCHHHHHHHHhcCCCCEEEecC
Q psy13219 161 DYVANQFDDSVDWDDVRSLVQATKLPIVCKGI 192 (193)
Q Consensus 161 ~~~~~~~~~~~tW~di~wlr~~~~lPivlKGI 192 (193)
.+|+.|+|+++.|++|+++|+|
T Consensus 159 ----------~~~~~i~~l~~~~~~pvivK~v 180 (299)
T cd02809 159 ----------LTWDDLAWLRSQWKGPLILKGI 180 (299)
T ss_pred ----------CCHHHHHHHHHhcCCCEEEeec
Confidence 3688999999999999999986
No 14
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.32 E-value=1.1e-11 Score=110.00 Aligned_cols=105 Identities=17% Similarity=0.127 Sum_probs=70.7
Q ss_pred CCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCcc--------ccHHHHHhhCCCCce
Q psy13219 4 NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST--------TSLEEVRAQNPSTTL 75 (193)
Q Consensus 4 dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss--------~s~eei~~~~~~~~~ 75 (193)
+++++||+|+|||++++.||+|+||++..---.+-..++|++|.++|+++++++++. .+++.+.+..|+.+.
T Consensus 44 ~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~~~~~~~~vr~~~p~~p~ 123 (352)
T PRK05437 44 DLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPELADSFSVVRKVAPDGLL 123 (352)
T ss_pred ChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChhhHHHHHHHHHHCCCceE
Confidence 678999999999999999999999864321111234799999999999999999862 344555665666654
Q ss_pred EEEEEeecCHHH-HHHHHHHHHHcCCcEEEEeec
Q psy13219 76 WLQMYIFKDRAL-SLQMVQRAERSGYSAIVITMD 108 (193)
Q Consensus 76 wfQlY~~~dr~~-~~~ll~RAe~AG~~AlvvTVD 108 (193)
+--|........ .+.+.+.++.+++.|+-|.+.
T Consensus 124 ~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~ 157 (352)
T PRK05437 124 FANLGAVQLYGYGVEEAQRAVEMIEADALQIHLN 157 (352)
T ss_pred EeecCccccCCCCHHHHHHHHHhcCCCcEEEeCc
Confidence 443333222111 123334445667788877653
No 15
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.31 E-value=1.8e-11 Score=107.37 Aligned_cols=99 Identities=20% Similarity=0.194 Sum_probs=69.4
Q ss_pred CCCCCCCcceECCceeCCceeecchhccccCCchH---HHHHHHHHhccCceeeeccCcc--------ccHHHHHhhCCC
Q psy13219 4 NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADG---EVATARAAGMMDAIMILSLMST--------TSLEEVRAQNPS 72 (193)
Q Consensus 4 dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~g---E~~~araA~~~g~~~~lst~ss--------~s~eei~~~~~~ 72 (193)
+++++||+|+|||++++.||+++||++. +... ..++|++|.++|++|++++.+. .+++.+.+..++
T Consensus 36 ~~~~id~s~~~~G~~l~~Pi~ia~mtGg---~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~e~~~~~~~vr~~~~~ 112 (326)
T cd02811 36 DLDDIDLSTEFLGKRLSAPLLISAMTGG---SEKAKEINRNLAEAAEELGIAMGVGSQRAALEDPELAESFTVVREAPPN 112 (326)
T ss_pred CcccCCCeeEECCceecCCEEEeCCCCC---ChHHHHHHHHHHHHHHHcCCCeEecCchhhccChhhhhHHHHHHHhCCC
Confidence 7889999999999999999999999753 3333 4799999999999999999853 344555555554
Q ss_pred CceEEEEEeec----CHHHHHHHHHHHHHcCCcEEEEeec
Q psy13219 73 TTLWLQMYIFK----DRALSLQMVQRAERSGYSAIVITMD 108 (193)
Q Consensus 73 ~~~wfQlY~~~----dr~~~~~ll~RAe~AG~~AlvvTVD 108 (193)
.+..--+-... +.+...+.+ +.+++.|+-|.++
T Consensus 113 ~p~~~Nl~~~~~~~~~~~~~~~~i---~~~~adalel~l~ 149 (326)
T cd02811 113 GPLIANLGAVQLNGYGVEEARRAV---EMIEADALAIHLN 149 (326)
T ss_pred ceEEeecCccccCCCCHHHHHHHH---HhcCCCcEEEeCc
Confidence 44322222222 444443333 4567888888765
No 16
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.21 E-value=1.3e-10 Score=102.27 Aligned_cols=103 Identities=19% Similarity=0.159 Sum_probs=67.1
Q ss_pred cCCCCCCCcceECCceeCCceeecchhccccCCchH---HHHHHHHHhccCceeeeccCcc--------ccHHHHHhhCC
Q psy13219 3 RNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADG---EVATARAAGMMDAIMILSLMST--------TSLEEVRAQNP 71 (193)
Q Consensus 3 ~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~g---E~~~araA~~~g~~~~lst~ss--------~s~eei~~~~~ 71 (193)
.|++++||+|+|||++++.||+++||++. ++.+ ...+|++|.++|+++++++.+. .+.+.+.+..+
T Consensus 36 ~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg---~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~~~~~~~vr~~~~ 112 (333)
T TIGR02151 36 INLDDIDLTTEFLGKRLKAPFYINAMTGG---SEEAGKINRNLARAARELGIPMGVGSQRAALKDPETADTFEVVREEAP 112 (333)
T ss_pred CCcccCCCceEECCccccCCEEEeCCCCC---chhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhhHhHHHHHHHhCC
Confidence 46789999999999999999999998643 2333 4699999999999999998862 13344455445
Q ss_pred CCceEEEEEeecCHH-HHHHHHHHHHHcCCcEEEEeec
Q psy13219 72 STTLWLQMYIFKDRA-LSLQMVQRAERSGYSAIVITMD 108 (193)
Q Consensus 72 ~~~~wfQlY~~~dr~-~~~~ll~RAe~AG~~AlvvTVD 108 (193)
+.+..--+-.....+ ..++..+.++..++.|+-+.+.
T Consensus 113 ~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln 150 (333)
T TIGR02151 113 NGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLN 150 (333)
T ss_pred CCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCc
Confidence 555433222211111 0223334445556777777664
No 17
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=98.46 E-value=1.3e-06 Score=76.67 Aligned_cols=94 Identities=14% Similarity=0.125 Sum_probs=62.8
Q ss_pred cCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHh----hCCCCceEEE
Q psy13219 3 RNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRA----QNPSTTLWLQ 78 (193)
Q Consensus 3 ~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~----~~~~~~~wfQ 78 (193)
.+++++|++|+++|.++++||+++.|- -..+..+|++|++.|..+++=-+ ++|+..+ ..+. |
T Consensus 17 ~s~~dVdlst~~~~~~l~~P~~inAM~------t~in~~LA~~a~~~G~~~i~hK~---~~E~~~sfvrk~k~~-----~ 82 (321)
T TIGR01306 17 NSRSECDTSVTLGKHKFKLPVVPANMQ------TIIDEKLAEQLAENGYFYIMHRF---DEESRIPFIKDMQER-----G 82 (321)
T ss_pred CCHHHceeeEEECCcEecCcEEeeccc------hhhhHHHHHHHHHcCCEEEEecC---CHHHHHHHHHhcccc-----c
Confidence 356789999999999999999999982 37899999999999999988663 5655332 2222 3
Q ss_pred EEeecCHHHH---HHHHHHHHHcCCcEEEEeeccC
Q psy13219 79 MYIFKDRALS---LQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 79 lY~~~dr~~~---~~ll~RAe~AG~~AlvvTVD~p 110 (193)
+++.-.-..+ .+.++.-.++|..+=+|.+|+.
T Consensus 83 L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~a 117 (321)
T TIGR01306 83 LFASISVGVKACEYEFVTQLAEEALTPEYITIDIA 117 (321)
T ss_pred cEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCc
Confidence 3332211111 1233333466866666777764
No 18
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.00 E-value=3.5e-05 Score=67.91 Aligned_cols=56 Identities=14% Similarity=0.015 Sum_probs=46.4
Q ss_pred cCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHH
Q psy13219 3 RNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVR 67 (193)
Q Consensus 3 ~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~ 67 (193)
.+++++|++|+|+|.++++||||++|- -..+..+|++|++.|..+++=- +++|+..
T Consensus 20 ~s~~dvdlst~~~~~~l~~P~~inAM~------t~iN~~LA~~a~~~G~~~~~~k---~~~e~~~ 75 (326)
T PRK05458 20 NSRSECDTSVTLGPRTFKLPVVPANMQ------TIIDEKIAEWLAENGYFYIMHR---FDPEARI 75 (326)
T ss_pred CCHHHcccceEECCcEecCcEEEeccc------chhHHHHHHHHHHcCCEEEEec---CCHHHHH
Confidence 456789999999999999999999982 2688999999999998888755 3566644
No 19
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=96.99 E-value=0.012 Score=50.79 Aligned_cols=96 Identities=16% Similarity=0.225 Sum_probs=56.0
Q ss_pred CcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeec-c--------------------------Ccccc
Q psy13219 10 SGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILS-L--------------------------MSTTS 62 (193)
Q Consensus 10 ~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~ls-t--------------------------~ss~s 62 (193)
++|+++|.++..||++||.-. ....|. .+...+.|.-+++. | +.+..
T Consensus 1 l~~~~~g~~l~npi~~aag~~----~~~~~~--~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g 74 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIM----GSGVES--LRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPG 74 (300)
T ss_pred CcEEECCEECCCCCEeCCcCC----CCCHHH--HHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcC
Confidence 478999999999999999322 112222 22222334444443 1 11222
Q ss_pred H----HHHHhhC--CCCceEEEEEeecCHHHHHHHHHHHHHcC--CcEEEEeeccCCC
Q psy13219 63 L----EEVRAQN--PSTTLWLQMYIFKDRALSLQMVQRAERSG--YSAIVITMDTAVL 112 (193)
Q Consensus 63 ~----eei~~~~--~~~~~wfQlY~~~dr~~~~~ll~RAe~AG--~~AlvvTVD~pv~ 112 (193)
+ +.+.... -+.+...||+ -.|.+...+..++.++++ +.+|-|.+=+|..
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~-g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~ 131 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVY-GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHV 131 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEee-cCCHHHHHHHHHHHHhccCccCEEEEECCCCCC
Confidence 3 3333221 1246788996 345666777888888764 8888887777753
No 20
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=96.97 E-value=0.016 Score=50.00 Aligned_cols=96 Identities=14% Similarity=0.106 Sum_probs=55.2
Q ss_pred CCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeee-ccCc--------------------------cc
Q psy13219 9 DSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMIL-SLMS--------------------------TT 61 (193)
Q Consensus 9 d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~l-st~s--------------------------s~ 61 (193)
|++|+++|.++.-||++|.-.. .-.+| .++.+.+.|.-+++ .|.+ +.
T Consensus 1 ~l~~~~~G~~~~nPv~~aag~~----~~~~~--~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~ 74 (301)
T PRK07259 1 RLSVELPGLKLKNPVMPASGTF----GFGGE--YARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNP 74 (301)
T ss_pred CCceEECCEECCCCcEECCcCC----CCCHH--HHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCc
Confidence 6899999999999999986322 11233 33333334333322 2221 22
Q ss_pred cHH----HHHhhC--CCCceEEEEEeecCHHHHHHHHHHHHHcC-CcEEEEeeccCC
Q psy13219 62 SLE----EVRAQN--PSTTLWLQMYIFKDRALSLQMVQRAERSG-YSAIVITMDTAV 111 (193)
Q Consensus 62 s~e----ei~~~~--~~~~~wfQlY~~~dr~~~~~ll~RAe~AG-~~AlvvTVD~pv 111 (193)
.++ ++.... -+.+...|+. -.+.+...+..++++++| +.+|-|.+=+|.
T Consensus 75 g~~~~~~~~~~~~~~~~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~ 130 (301)
T PRK07259 75 GVDAFIEEELPWLEEFDTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPN 130 (301)
T ss_pred CHHHHHHHHHHHHhccCCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCC
Confidence 233 332211 1345667774 335666677788888887 888877775553
No 21
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.88 E-value=0.02 Score=49.16 Aligned_cols=40 Identities=10% Similarity=0.124 Sum_probs=31.1
Q ss_pred CCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCC
Q psy13219 72 STTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVL 112 (193)
Q Consensus 72 ~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~ 112 (193)
+.+...||.- .+.+...+..++++++|+.+|-|++-+|..
T Consensus 89 ~~p~ivsi~g-~~~~~~~~~a~~~~~~G~d~iElN~~cP~~ 128 (296)
T cd04740 89 GTPVIASIAG-STVEEFVEVAEKLADAGADAIELNISCPNV 128 (296)
T ss_pred CCcEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 4567888864 456777788999999999999999777753
No 22
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.86 E-value=0.0084 Score=53.79 Aligned_cols=90 Identities=17% Similarity=0.202 Sum_probs=59.2
Q ss_pred CCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCc----cccHHHHHhhCCC--C----
Q psy13219 4 NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMS----TTSLEEVRAQNPS--T---- 73 (193)
Q Consensus 4 dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~s----s~s~eei~~~~~~--~---- 73 (193)
+.+++|+++.+-+..+..||+.+||.. . .+..+|++.+++|-.-++...+ ..+.|++.+..-. .
T Consensus 31 ~~~dvdls~~~~~~~i~~Piv~a~M~g--V----t~~~la~avs~~GglGvl~~~gl~~~~~~~e~l~~qi~~~~~~~~~ 104 (368)
T PRK08649 31 DPEDVSTSWQIDAYRFEIPIIASPMDA--V----VSPETAIELGKLGGLGVLNLEGLWTRYEDPEPILDEIASLGKDEAT 104 (368)
T ss_pred CHHHceeeeeecceeccCcEeccCCcc--c----CCHHHHHHHHhCCCceEEeeccccccCCCHHHHHHHHHhcCcHHHH
Confidence 446889998898999999999999843 3 4567888999998866665321 2355555442100 0
Q ss_pred ceEEEEE-eecCHHHHHHHHHHHHHcC
Q psy13219 74 TLWLQMY-IFKDRALSLQMVQRAERSG 99 (193)
Q Consensus 74 ~~wfQlY-~~~dr~~~~~ll~RAe~AG 99 (193)
...-++| -+.|.++..++++..+++|
T Consensus 105 ~~~~~~~~~P~~p~l~~~iv~~~~~~~ 131 (368)
T PRK08649 105 RLMQELYAEPIKPELITERIAEIRDAG 131 (368)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhCe
Confidence 0001112 1467888889999988875
No 23
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=96.73 E-value=0.025 Score=49.72 Aligned_cols=37 Identities=11% Similarity=0.095 Sum_probs=24.2
Q ss_pred CCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecc
Q psy13219 72 STTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDT 109 (193)
Q Consensus 72 ~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~ 109 (193)
+.+.+.|+.- .+.+...+..++++++|+.+|-|.+-.
T Consensus 99 ~~pvi~si~g-~~~~~~~~~a~~~~~~gad~iElN~s~ 135 (325)
T cd04739 99 SIPVIASLNG-VSAGGWVDYARQIEEAGADALELNIYA 135 (325)
T ss_pred CCeEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3566677633 345556677777777777777777764
No 24
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=96.70 E-value=0.022 Score=51.48 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=21.0
Q ss_pred CCCCCcceECCceeCCceeecchh
Q psy13219 6 CDRDSGLTVLGTRYRCPVGIAPSA 29 (193)
Q Consensus 6 ~~~d~~t~~lG~~~~~P~~iaP~g 29 (193)
+..|++|+++|.++.-||++|.-.
T Consensus 7 ~~~dLst~~~Gl~l~NP~i~ASgp 30 (385)
T PLN02495 7 SEPDLSVTVNGLKMPNPFVIGSGP 30 (385)
T ss_pred CCCcceEEECCEEcCCCcEeCCcc
Confidence 567999999999999999998643
No 25
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=96.70 E-value=0.044 Score=47.48 Aligned_cols=41 Identities=10% Similarity=0.074 Sum_probs=33.4
Q ss_pred CCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCC
Q psy13219 72 STTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVL 112 (193)
Q Consensus 72 ~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~ 112 (193)
+.+...|+.-..|.+...+.+++++++|+.+|-|.+.+|..
T Consensus 99 ~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~ 139 (299)
T cd02940 99 DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHG 139 (299)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 45778888655478888888999988999999999998864
No 26
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=96.39 E-value=0.027 Score=50.62 Aligned_cols=91 Identities=16% Similarity=0.162 Sum_probs=56.6
Q ss_pred cCCCCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCc----cccH----HHHHhhCCC--
Q psy13219 3 RNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMS----TTSL----EEVRAQNPS-- 72 (193)
Q Consensus 3 ~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~s----s~s~----eei~~~~~~-- 72 (193)
+|.+++||+..+=+.++..||+.|||+. + -+..++.++.++|-+-++|..+ +... .+|.....+
T Consensus 27 ~~~~~v~~~~~i~~~~l~~PivlAPMag--V----td~~fr~~~~~~Galgvvsaegl~~~~~~~~~~~~QI~g~~~~~~ 100 (369)
T TIGR01304 27 RSSKDVDTAWQIDAYRFELPFIAHPMDA--L----VSPEFAIELGELGGLGVLNLEGLWGRHEDPDPAIAKIAEAYEEGD 100 (369)
T ss_pred CChhhccceeEEcceecCCceeecCCCc--c----cCHHHHHHHHHcCCcccccchHHHhcCCCHHHHHHHHhhcCCChH
Confidence 4556778887777788899999999864 3 3567888899998866676421 1122 233221111
Q ss_pred ---C-ceEEEEEe-ecCHHHHHHHHHHHHHcC
Q psy13219 73 ---T-TLWLQMYI-FKDRALSLQMVQRAERSG 99 (193)
Q Consensus 73 ---~-~~wfQlY~-~~dr~~~~~ll~RAe~AG 99 (193)
. ..--++|. +.|.+++.++++.+++++
T Consensus 101 ~a~aa~~~~e~~~~~~~p~l~~~ii~~vr~a~ 132 (369)
T TIGR01304 101 QAAATRLLQELHAAPLKPELLGERIAEVRDSG 132 (369)
T ss_pred HHHHHHHHHHcCCCccChHHHHHHHHHHHhcc
Confidence 0 00011222 357888888899888886
No 27
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.09 E-value=0.09 Score=44.90 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=32.8
Q ss_pred CCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCC
Q psy13219 72 STTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLG 113 (193)
Q Consensus 72 ~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G 113 (193)
+.+...|+.- .+.+...+.+++++++|+.+|-|++-+|...
T Consensus 98 ~~pvi~si~g-~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~ 138 (289)
T cd02810 98 GQPLIASVGG-SSKEDYVELARKIERAGAKALELNLSCPNVG 138 (289)
T ss_pred CCeEEEEecc-CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCC
Confidence 4567778754 3667788899999999999999999988643
No 28
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=96.07 E-value=0.047 Score=48.44 Aligned_cols=53 Identities=17% Similarity=0.053 Sum_probs=40.2
Q ss_pred CCCCCcceECCc-----eeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHH
Q psy13219 6 CDRDSGLTVLGT-----RYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEV 66 (193)
Q Consensus 6 ~~~d~~t~~lG~-----~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei 66 (193)
+++|++++|--+ .+..||+-|.| .--+|..+|.+-++.|..+++-- +.++|+-
T Consensus 26 ~evdl~~~~~~~~~~~~~~~iPii~AnM------dtv~~~~mA~~la~~g~~~~iHk--~~~~e~~ 83 (343)
T TIGR01305 26 ADVELERTFTFRNSKQTYSGVPIIAANM------DTVGTFEMAAALSQHSIFTAIHK--HYSVDEW 83 (343)
T ss_pred HHceeeEEEccccCCceeeCCceEecCC------CcccCHHHHHHHHHCCCeEEEee--CCCHHHH
Confidence 678899888644 78999998764 22378889999999999999844 4566653
No 29
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.02 E-value=0.027 Score=49.62 Aligned_cols=94 Identities=17% Similarity=0.097 Sum_probs=59.9
Q ss_pred CCCCCCCcceECC-ceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhC---CCCceEEEE
Q psy13219 4 NVCDRDSGLTVLG-TRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQN---PSTTLWLQM 79 (193)
Q Consensus 4 dv~~~d~~t~~lG-~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~---~~~~~wfQl 79 (193)
+.+++|++|.|.+ ..+..||+.|||... .|..+|.+.+++|-.-++.. +.+.|+..+.. .......+.
T Consensus 17 ~~~~vdl~t~l~~~~~l~~Piv~apM~~v------t~~~ma~ava~~GglGvi~~--~~~~~~~~~~i~~vk~~l~v~~~ 88 (325)
T cd00381 17 LPSEVDLSTKLTKNITLNIPLVSAPMDTV------TESEMAIAMARLGGIGVIHR--NMSIEEQAEEVRKVKGRLLVGAA 88 (325)
T ss_pred CHHHceeeEEecCccccCCCEEecCCCcC------CcHHHHHHHHHCCCEEEEeC--CCCHHHHHHHHHHhccCceEEEe
Confidence 3567899999998 889999999998643 35567777778877666643 24555554322 222223333
Q ss_pred EeecCHHHHHHHHHHHHHcCCcEEEEee
Q psy13219 80 YIFKDRALSLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 80 Y~~~dr~~~~~ll~RAe~AG~~AlvvTV 107 (193)
+..+ ....+.++...++|++.|+|+.
T Consensus 89 -~~~~-~~~~~~~~~l~eagv~~I~vd~ 114 (325)
T cd00381 89 -VGTR-EDDKERAEALVEAGVDVIVIDS 114 (325)
T ss_pred -cCCC-hhHHHHHHHHHhcCCCEEEEEC
Confidence 2222 2344566666678999888755
No 30
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=95.94 E-value=0.058 Score=47.08 Aligned_cols=88 Identities=18% Similarity=0.144 Sum_probs=57.6
Q ss_pred CceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccC-ccc-------cHHHHHhhC-CCCceEEEEEeecCHH
Q psy13219 16 GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLM-STT-------SLEEVRAQN-PSTTLWLQMYIFKDRA 86 (193)
Q Consensus 16 G~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~-ss~-------s~eei~~~~-~~~~~wfQlY~~~dr~ 86 (193)
|..+..|+++|||... .+.+..+.|.+.|.-++.+-+ +.. ...++.... .+.+.-.||. -.|.+
T Consensus 3 ~~~~~~~l~lAPm~~~------t~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~-g~~~~ 75 (319)
T TIGR00737 3 NIQLKSRVVLAPMAGV------TDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLF-GSDPD 75 (319)
T ss_pred CccCCCCEEecCCCCC------CcHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEe-CCCHH
Confidence 4577899999998643 344455556666654444322 111 122222222 2456779994 66788
Q ss_pred HHHHHHHHHHHcCCcEEEEeeccC
Q psy13219 87 LSLQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 87 ~~~~ll~RAe~AG~~AlvvTVD~p 110 (193)
...+..++++++||.+|=|..-.|
T Consensus 76 ~~~~aa~~~~~~G~d~IelN~gcP 99 (319)
T TIGR00737 76 TMAEAAKINEELGADIIDINMGCP 99 (319)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCC
Confidence 888899999999999998888776
No 31
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=95.72 E-value=0.074 Score=48.03 Aligned_cols=50 Identities=16% Similarity=0.122 Sum_probs=39.7
Q ss_pred eeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhh
Q psy13219 18 RYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQ 69 (193)
Q Consensus 18 ~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~ 69 (193)
.+..||++|||++..+ -.+.-.++|.||+.+|...+++... .+.|++...
T Consensus 75 ~i~~Pi~~~~Ms~Gs~-s~~a~~aLa~aa~~aG~~~~~Gegg-~~~~~~~~~ 124 (392)
T cd02808 75 KLDSPFNISAMSFGAL-SKEAKEALAIGAALAGTASNTGEGG-ELPEEREGG 124 (392)
T ss_pred ccccceEecCCCCCcc-cHHHHHHHHHHHHhcCCceeecCCC-CCHHHHhhh
Confidence 3578999999987765 4567799999999999999888644 667777543
No 32
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.65 E-value=0.19 Score=44.20 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=19.4
Q ss_pred CCcceECCceeCCceeecchhcc
Q psy13219 9 DSGLTVLGTRYRCPVGIAPSAMQ 31 (193)
Q Consensus 9 d~~t~~lG~~~~~P~~iaP~g~~ 31 (193)
|++|+++|.++.-||++|.-++.
T Consensus 2 ~l~~~~~Gl~l~nPv~~asg~~~ 24 (334)
T PRK07565 2 DLSTTYLGLTLRNPLVASASPLS 24 (334)
T ss_pred CceEEECCEecCCCCEecCcCCC
Confidence 68999999999999998775543
No 33
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=95.59 E-value=0.13 Score=46.63 Aligned_cols=40 Identities=10% Similarity=0.110 Sum_probs=29.7
Q ss_pred CCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCC
Q psy13219 72 STTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAV 111 (193)
Q Consensus 72 ~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv 111 (193)
+.+...||.-..+.+...+..+.++++|+.+|-|.+=.|.
T Consensus 99 ~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~ 138 (420)
T PRK08318 99 DRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPH 138 (420)
T ss_pred CceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 4556777765446677778888888888888888888875
No 34
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=95.11 E-value=0.43 Score=41.71 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=18.0
Q ss_pred CCcceECCceeCCceeecch
Q psy13219 9 DSGLTVLGTRYRCPVGIAPS 28 (193)
Q Consensus 9 d~~t~~lG~~~~~P~~iaP~ 28 (193)
|++|+++|.++.-||++|.-
T Consensus 1 dL~~~~~Gl~l~NPv~~AsG 20 (310)
T PRK02506 1 STSTQIAGFKFDNCLMNAAG 20 (310)
T ss_pred CCceEECCEECCCCCEeCCC
Confidence 67999999999999999763
No 35
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=94.04 E-value=0.91 Score=40.21 Aligned_cols=43 Identities=28% Similarity=0.466 Sum_probs=28.6
Q ss_pred CCCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeee
Q psy13219 6 CDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMIL 55 (193)
Q Consensus 6 ~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~l 55 (193)
.+++++|+++|.++..||++|. |.. .++| ..+...+.|.-+++
T Consensus 45 ~~~~L~~~~~Gl~l~nPi~~As-G~~----~~~~--~~~~~~~~G~Gavv 87 (344)
T PRK05286 45 TDPRLPVTVMGLTFPNPVGLAA-GFD----KNGE--AIDALGALGFGFVE 87 (344)
T ss_pred CCCCCceEECCEECCCCCEECC-CCC----CChH--HHHHHHHcCCCEEE
Confidence 4678999999999999998855 322 2344 33445555554443
No 36
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.22 E-value=1 Score=40.99 Aligned_cols=56 Identities=16% Similarity=0.081 Sum_probs=40.1
Q ss_pred CCCCCcceEC-CceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhh
Q psy13219 6 CDRDSGLTVL-GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQ 69 (193)
Q Consensus 6 ~~~d~~t~~l-G~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~ 69 (193)
+++|++|.+. ...+..||+-|||... .|..+|.|.+++|-.-++.. +.++|++.+.
T Consensus 27 ~~vdl~t~lt~~l~l~iPIvsApMd~V------t~~~lA~AvA~aGGlGvI~~--~~~~e~l~~e 83 (404)
T PRK06843 27 SEVSLKTQLTKNISLNIPFLSSAMDTV------TESQMAIAIAKEGGIGIIHK--NMSIEAQRKE 83 (404)
T ss_pred HhccccchhhhccCCCCCEecCCCCCC------CCHHHHHHHHHCCCEEEecC--CCCHHHHHHH
Confidence 4678887775 4557899999998632 25678888888888777763 5677776443
No 37
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=92.93 E-value=1.2 Score=39.05 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=20.8
Q ss_pred CCCCCCCcceECCceeCCceeecc
Q psy13219 4 NVCDRDSGLTVLGTRYRCPVGIAP 27 (193)
Q Consensus 4 dv~~~d~~t~~lG~~~~~P~~iaP 27 (193)
...+.|++|+++|.++..||++|.
T Consensus 33 ~~~~~~L~~~~~Gl~l~nPi~~As 56 (327)
T cd04738 33 VYDDPRLEVEVFGLTFPNPVGLAA 56 (327)
T ss_pred CCCCCCcceEECCEECCCCCEeCc
Confidence 356789999999999999998855
No 38
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=90.28 E-value=4.5 Score=35.47 Aligned_cols=89 Identities=18% Similarity=0.031 Sum_probs=57.8
Q ss_pred CceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccC-ccccH--------HHHHhhCCCCceEEEEEeecCHH
Q psy13219 16 GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLM-STTSL--------EEVRAQNPSTTLWLQMYIFKDRA 86 (193)
Q Consensus 16 G~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~-ss~s~--------eei~~~~~~~~~wfQlY~~~dr~ 86 (193)
+..+..|+++|||++. .+...-+.|.+.|..++.+-+ +..++ ..+.......+.-.|| .-.|.+
T Consensus 5 ~~~~~~~~~lAPM~g~------td~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl-~g~~~~ 77 (321)
T PRK10415 5 QYQLRNRLIAAPMAGI------TDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQI-AGSDPK 77 (321)
T ss_pred CccCCCCEEecCCCCC------CcHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEE-eCCCHH
Confidence 3467789999998533 355666777777755544332 21111 1111111123456898 466788
Q ss_pred HHHHHHHHHHHcCCcEEEEeeccCC
Q psy13219 87 LSLQMVQRAERSGYSAIVITMDTAV 111 (193)
Q Consensus 87 ~~~~ll~RAe~AG~~AlvvTVD~pv 111 (193)
...+..+++++.||+.|=+..=+|+
T Consensus 78 ~~~~aa~~~~~~g~d~IdlN~gCP~ 102 (321)
T PRK10415 78 EMADAARINVESGAQIIDINMGCPA 102 (321)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCH
Confidence 8888888888999999999999996
No 39
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=90.05 E-value=3.1 Score=35.94 Aligned_cols=17 Identities=24% Similarity=0.149 Sum_probs=14.9
Q ss_pred ceECCceeCCceeecch
Q psy13219 12 LTVLGTRYRCPVGIAPS 28 (193)
Q Consensus 12 t~~lG~~~~~P~~iaP~ 28 (193)
++++|.++.-||++|.-
T Consensus 1 ~~~~Gl~l~nPi~~Asg 17 (294)
T cd04741 1 VTPPGLTISPPLMNAAG 17 (294)
T ss_pred CccCCeeCCCCCEECCC
Confidence 57899999999999873
No 40
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=87.79 E-value=9.7 Score=33.67 Aligned_cols=39 Identities=33% Similarity=0.543 Sum_probs=25.5
Q ss_pred CcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeee
Q psy13219 10 SGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMIL 55 (193)
Q Consensus 10 ~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~l 55 (193)
++|+++|.++..||++|. |. ...+| ..+...++|.-+++
T Consensus 46 L~~~~~Gl~l~NPi~lAs-G~----~~~~~--~~~~~~~~G~Gavv 84 (335)
T TIGR01036 46 LEVTVLGLKFPNPLGLAA-GF----DKDGE--AIDALGAMGFGFLE 84 (335)
T ss_pred CcEEECCEECCCCcEeCC-cc----CCCHH--HHHHHHhcCCCEEE
Confidence 899999999999999943 32 23455 34444444555544
No 41
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=87.18 E-value=1.8 Score=36.98 Aligned_cols=86 Identities=17% Similarity=0.349 Sum_probs=61.3
Q ss_pred CceEEEEEeecCHH----HHHHHHHHHHHc---CCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccch
Q psy13219 73 TTLWLQMYIFKDRA----LSLQMVQRAERS---GYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDIS 145 (193)
Q Consensus 73 ~~~wfQlY~~~dr~----~~~~ll~RAe~A---G~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~ 145 (193)
+..|+-|-+-.|.. ...+++++|+.. ||..+-++.|.++..+|-.+..-.+-+|.. .
T Consensus 90 ~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg----~------------ 153 (248)
T cd04728 90 GTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLG----S------------ 153 (248)
T ss_pred CCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCC----c------------
Confidence 46799999988775 456899999999 999999999999999998887322211100 0
Q ss_pred hhcccccccCCcchhhHhhhhCCCCCCHHHHHHHHhcCCCCEEEec
Q psy13219 146 KFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKG 191 (193)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~lPivlKG 191 (193)
.+++. ..-.+++-|+.+++..+.||++-|
T Consensus 154 ----------------pIGsg-~Gi~~~~~I~~I~e~~~vpVI~eg 182 (248)
T cd04728 154 ----------------PIGSG-QGLLNPYNLRIIIERADVPVIVDA 182 (248)
T ss_pred ----------------CCCCC-CCCCCHHHHHHHHHhCCCcEEEeC
Confidence 00000 122358889999999889998865
No 42
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=86.83 E-value=7 Score=33.83 Aligned_cols=157 Identities=11% Similarity=0.162 Sum_probs=80.7
Q ss_pred eeCCceeecchhccccCCchHHH---HHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeec-----CHHHHH
Q psy13219 18 RYRCPVGIAPSAMQKLAHADGEV---ATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFK-----DRALSL 89 (193)
Q Consensus 18 ~~~~P~~iaP~g~~~l~~~~gE~---~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~-----dr~~~~ 89 (193)
+...|++|.=.-.. +-|...|. .+..+|.+..+|.++=-==..++|.+..+...|..++|+=-.. +-+.++
T Consensus 40 ~~~~Pvii~~~~~~-~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~ 118 (281)
T PRK06806 40 ELNSPIILQIAEVR-LNHSPLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTK 118 (281)
T ss_pred HhCCCEEEEcCcch-hccCChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHH
Confidence 34567776332111 22223332 3345666778888874332357787777766677788874322 224567
Q ss_pred HHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhccc--ccccCCcchhhHhhhh-
Q psy13219 90 QMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDI--SAEECSSGLTDYVANQ- 166 (193)
Q Consensus 90 ~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~- 166 (193)
++++.|++.|.. |-.|.-.+|.-+.+... + ..+..+..+. ..|.+. .+.- .-+++...+..
T Consensus 119 ~v~~~a~~~gv~---veaE~ghlG~~d~~~~~---~--g~s~t~~eea-------~~f~~~tg~DyL-AvaiG~~hg~~~ 182 (281)
T PRK06806 119 EIVELAKQYGAT---VEAEIGRVGGSEDGSED---I--EMLLTSTTEA-------KRFAEETDVDAL-AVAIGNAHGMYN 182 (281)
T ss_pred HHHHHHHHcCCe---EEEEeeeECCccCCccc---c--cceeCCHHHH-------HHHHHhhCCCEE-EEccCCCCCCCC
Confidence 778888888765 34555556644432110 0 0111111110 000000 0000 00001111111
Q ss_pred CCCCCCHHHHHHHHhcCCCCEEEec
Q psy13219 167 FDDSVDWDDVRSLVQATKLPIVCKG 191 (193)
Q Consensus 167 ~~~~~tW~di~wlr~~~~lPivlKG 191 (193)
-.|.+++|-|+.+++..+.|+|+=|
T Consensus 183 ~~~~l~~~~L~~i~~~~~iPlV~hG 207 (281)
T PRK06806 183 GDPNLRFDRLQEINDVVHIPLVLHG 207 (281)
T ss_pred CCCccCHHHHHHHHHhcCCCEEEEC
Confidence 2478999999999999999999877
No 43
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=85.48 E-value=1.3 Score=30.91 Aligned_cols=55 Identities=18% Similarity=0.328 Sum_probs=41.3
Q ss_pred eeeeccCccccHHHHHhhCCC----------CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219 52 IMILSLMSTTSLEEVRAQNPS----------TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 52 ~~~lst~ss~s~eei~~~~~~----------~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT 106 (193)
.++.=+....++|++.+..|+ ..-|+=+...-+++...+++.+.+++|++.|+++
T Consensus 6 ~~l~~Nvp~~~l~~v~~ilPg~~~PTVs~L~~~~w~AV~~vV~~~~~~~~~~~Lk~~GA~~Ilv~ 70 (75)
T PF08029_consen 6 VLLMMNVPRESLEEVIKILPGLKSPTVSPLADEDWVAVHAVVPEKQVWDLMDKLKAAGASDILVL 70 (75)
T ss_dssp EEEEEEEECCCHHHHHHHS--SSS-EEEE-SSTTEEEEEEEEECCCHHHHHHHHHCTT-EEEEEE
T ss_pred eEEEEeCCHHHHHHHHHhCCCCCCCceeecCCCCEEEEEEEecHHHHHHHHHHHHHcCCCEEEEE
Confidence 344445556788888877541 2359888888888999999999999999999875
No 44
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=85.35 E-value=6.5 Score=34.68 Aligned_cols=90 Identities=16% Similarity=0.079 Sum_probs=54.6
Q ss_pred CceeCCceeecchhccccCCchHHHHHHHHHhccCc-eeeeccC----c--cccHHHHHhh-CCCCceEEEEEeecCHHH
Q psy13219 16 GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDA-IMILSLM----S--TTSLEEVRAQ-NPSTTLWLQMYIFKDRAL 87 (193)
Q Consensus 16 G~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~-~~~lst~----s--s~s~eei~~~-~~~~~~wfQlY~~~dr~~ 87 (193)
+.....|+++|||++.. +...-+-|.+.|. -++.+-+ + .....+.... ..+.+.-.||. -.|.+.
T Consensus 6 ~~~~~~~~~lAPM~g~t------d~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~ 78 (333)
T PRK11815 6 SKLPSRRFSVAPMMDWT------DRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLG-GSDPAD 78 (333)
T ss_pred ccCCCCCEEEeCCCCCc------CHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEe-CCCHHH
Confidence 45567799999986432 2333333444453 2222211 1 0111222222 23567889995 667888
Q ss_pred HHHHHHHHHHcCCcEEEEeeccCCC
Q psy13219 88 SLQMVQRAERSGYSAIVITMDTAVL 112 (193)
Q Consensus 88 ~~~ll~RAe~AG~~AlvvTVD~pv~ 112 (193)
..+..++++++||..|=|...+|..
T Consensus 79 ~~~aA~~~~~~g~d~IdlN~gCP~~ 103 (333)
T PRK11815 79 LAEAAKLAEDWGYDEINLNVGCPSD 103 (333)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCHH
Confidence 8888999999999998888887654
No 45
>KOG2335|consensus
Probab=85.15 E-value=10 Score=34.04 Aligned_cols=24 Identities=17% Similarity=0.749 Sum_probs=19.1
Q ss_pred CCCCCHHHHHHHHhcCC-CCEEEec
Q psy13219 168 DDSVDWDDVRSLVQATK-LPIVCKG 191 (193)
Q Consensus 168 ~~~~tW~di~wlr~~~~-lPivlKG 191 (193)
.+.++|+.|+-+|+.-. .||++-|
T Consensus 186 ~~pad~~~i~~v~~~~~~ipviaNG 210 (358)
T KOG2335|consen 186 TGPADWEAIKAVRENVPDIPVIANG 210 (358)
T ss_pred CCCcCHHHHHHHHHhCcCCcEEeeC
Confidence 45678888888888887 8888766
No 46
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=83.94 E-value=4.5 Score=34.71 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=15.0
Q ss_pred CcceECCceeCCceeecc
Q psy13219 10 SGLTVLGTRYRCPVGIAP 27 (193)
Q Consensus 10 ~~t~~lG~~~~~P~~iaP 27 (193)
++|+++|.++.-||++|.
T Consensus 2 L~~~~~Gl~l~nPi~~as 19 (295)
T PF01180_consen 2 LSTNFCGLTLKNPIGLAS 19 (295)
T ss_dssp G-EEETTEEESSSEEE-T
T ss_pred ccEEECCEEcCCCcEECC
Confidence 689999999999999974
No 47
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=83.31 E-value=6.7 Score=28.72 Aligned_cols=57 Identities=18% Similarity=0.397 Sum_probs=44.2
Q ss_pred CceeeeccCccccHHHHHhhCCC----------CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219 50 DAIMILSLMSTTSLEEVRAQNPS----------TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 50 g~~~~lst~ss~s~eei~~~~~~----------~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT 106 (193)
+-.|+.=......+|++.+..|+ ...|+-+...-+++...+++.+-+++|++.|+++
T Consensus 28 ~~~~v~~Nvp~~~l~~v~~ilPg~~~PTVs~l~~~~w~AV~~vv~~~~v~~~~~~Lk~~GA~~Ilv~ 94 (100)
T TIGR03455 28 GKVLLMMNVPRDNLDEVRALLPGLEGPTVSPLADEGWVAVHAVVDEKVVNELIDKLKAAGARDILVL 94 (100)
T ss_pred heeEEEEeCChhhHHHHHHhcCCCCCCCcCcCCCCCeEEEEEEEcHHHHHHHHHHHHHcCCCeEEEe
Confidence 44455556666778888766431 1359999999999999999999999999999875
No 48
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=82.87 E-value=9.1 Score=31.13 Aligned_cols=40 Identities=18% Similarity=0.122 Sum_probs=32.3
Q ss_pred CCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCC
Q psy13219 71 PSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAV 111 (193)
Q Consensus 71 ~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv 111 (193)
.+.+.-.||. -.|.+...+..++++++||.+|=|.+-.|.
T Consensus 53 ~~~p~~~qi~-g~~~~~~~~aa~~~~~aG~d~ieln~g~p~ 92 (231)
T cd02801 53 EERPLIVQLG-GSDPETLAEAAKIVEELGADGIDLNMGCPS 92 (231)
T ss_pred cCCCEEEEEc-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCH
Confidence 3567788886 456777788899999999999999988764
No 49
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=82.17 E-value=4.5 Score=33.79 Aligned_cols=73 Identities=16% Similarity=0.078 Sum_probs=48.9
Q ss_pred HHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEE------------------------------EEEeecCHHHH
Q psy13219 39 EVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWL------------------------------QMYIFKDRALS 88 (193)
Q Consensus 39 E~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wf------------------------------QlY~~~dr~~~ 88 (193)
+..+.+.-.+.+-..++||++...++.+.+..|+-+..+ +.|.......+
T Consensus 118 ~~~v~~~l~~~~~~v~i~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (237)
T cd08585 118 ERRVLAALKDYKGPAAIMSFDPRVVRWFRKLAPGIPRGQLSEGSNDEADPAFWNEALLSALFSNLLTRPDFIAYHLDDLP 197 (237)
T ss_pred HHHHHHHHHhcCCCEEEEECCHHHHHHHHHHCCCCCEEEEecCCcccccccchhHHHHHhhhhhhccCCCEEEeChhhCc
Confidence 344555555556678889999888998887765432211 01111223345
Q ss_pred HHHHHHHHHc-CCcEEEEeeccCC
Q psy13219 89 LQMVQRAERS-GYSAIVITMDTAV 111 (193)
Q Consensus 89 ~~ll~RAe~A-G~~AlvvTVD~pv 111 (193)
.+++++|+++ |.+-.+.|||.+.
T Consensus 198 ~~~v~~~~~~~G~~v~vWTVnd~~ 221 (237)
T cd08585 198 NPFVTLARALLGMPVIVWTVRTEE 221 (237)
T ss_pred CHHHHHHHHhcCCcEEEEeCCCHH
Confidence 6799999999 9999999999763
No 50
>PRK00208 thiG thiazole synthase; Reviewed
Probab=82.10 E-value=4.8 Score=34.43 Aligned_cols=86 Identities=16% Similarity=0.344 Sum_probs=60.8
Q ss_pred CceEEEEEeecCHH----HHHHHHHHHHHc---CCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccch
Q psy13219 73 TTLWLQMYIFKDRA----LSLQMVQRAERS---GYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDIS 145 (193)
Q Consensus 73 ~~~wfQlY~~~dr~----~~~~ll~RAe~A---G~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~ 145 (193)
+..|+-|-+-.|.. ...+++++|+.. ||..+-++.|.++..+|-.+..-.+ +|+ +.. +
T Consensus 90 ~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~-vmP---lg~-------p---- 154 (250)
T PRK00208 90 GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAA-VMP---LGA-------P---- 154 (250)
T ss_pred CCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCE-eCC---CCc-------C----
Confidence 46799999988765 456899999999 9999989999999999988873222 111 000 0
Q ss_pred hhcccccccCCcchhhHhhhhCCCCCCHHHHHHHHhcCCCCEEEec
Q psy13219 146 KFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKG 191 (193)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~lPivlKG 191 (193)
+++- .+-.+++-|+.+++..+.||++-|
T Consensus 155 -----------------IGsg-~gi~~~~~i~~i~e~~~vpVIvea 182 (250)
T PRK00208 155 -----------------IGSG-LGLLNPYNLRIIIEQADVPVIVDA 182 (250)
T ss_pred -----------------CCCC-CCCCCHHHHHHHHHhcCCeEEEeC
Confidence 0000 122357889999998888998754
No 51
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=81.63 E-value=6.7 Score=32.10 Aligned_cols=82 Identities=15% Similarity=0.174 Sum_probs=45.5
Q ss_pred CCceeecchhccccCCchHHHHHHHHHhccCceeeeccCc--cccH----HHHHhhCCCCceEEEEEeecCHHHHHHHHH
Q psy13219 20 RCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMS--TTSL----EEVRAQNPSTTLWLQMYIFKDRALSLQMVQ 93 (193)
Q Consensus 20 ~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~s--s~s~----eei~~~~~~~~~wfQlY~~~dr~~~~~ll~ 93 (193)
..|++.|||.+ +. +...++++.+.|-.-.+|... ...+ +++.+.. +.+.-+++.....+....+.++
T Consensus 2 ~~pi~~a~m~g--~~----~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~~~i~~~~-~~~~~v~~i~~~~~~~~~~~~~ 74 (236)
T cd04730 2 RYPIIQAPMAG--VS----TPELAAAVSNAGGLGFIGAGYLTPEALRAEIRKIRALT-DKPFGVNLLVPSSNPDFEALLE 74 (236)
T ss_pred CCCEECCCCCC--CC----CHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHHHhc-CCCeEEeEecCCCCcCHHHHHH
Confidence 46999999653 32 334555555665433344322 1112 2222221 1233466655432235668899
Q ss_pred HHHHcCCcEEEEeec
Q psy13219 94 RAERSGYSAIVITMD 108 (193)
Q Consensus 94 RAe~AG~~AlvvTVD 108 (193)
.++++|+..|.+.-.
T Consensus 75 ~~~~~g~d~v~l~~~ 89 (236)
T cd04730 75 VALEEGVPVVSFSFG 89 (236)
T ss_pred HHHhCCCCEEEEcCC
Confidence 999999999988644
No 52
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=81.39 E-value=11 Score=32.31 Aligned_cols=85 Identities=12% Similarity=0.035 Sum_probs=57.3
Q ss_pred CceeecchhccccCCchHHHHHHHHHhccCcee--eeccCc---cccHHHH-------HhhC-CCCceEEEEEeecCHHH
Q psy13219 21 CPVGIAPSAMQKLAHADGEVATARAAGMMDAIM--ILSLMS---TTSLEEV-------RAQN-PSTTLWLQMYIFKDRAL 87 (193)
Q Consensus 21 ~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~--~lst~s---s~s~eei-------~~~~-~~~~~wfQlY~~~dr~~ 87 (193)
.|.++.|+.-.+-++.++=..+.+-..+.|+-- +.+|.+ +.|.||- .+.. +..+...++- . +-+.
T Consensus 5 ~~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~ 82 (289)
T cd00951 5 LSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTAT 82 (289)
T ss_pred EEEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHH
Confidence 466788876555567777778888888888644 344443 3454433 2222 2345677764 3 6777
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q psy13219 88 SLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 88 ~~~ll~RAe~AG~~AlvvTV 107 (193)
+.++.++|+++|+.++++.-
T Consensus 83 ~i~~a~~a~~~Gad~v~~~p 102 (289)
T cd00951 83 AIAYAQAAEKAGADGILLLP 102 (289)
T ss_pred HHHHHHHHHHhCCCEEEECC
Confidence 88899999999999999954
No 53
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=81.27 E-value=38 Score=29.88 Aligned_cols=40 Identities=33% Similarity=0.450 Sum_probs=27.1
Q ss_pred CCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCce
Q psy13219 9 DSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAI 52 (193)
Q Consensus 9 d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~ 52 (193)
+++++++|.++.-||++|. +...-++|...+.++..+|-.
T Consensus 1 ~l~~~~~Gl~f~NPl~lAa----G~~~~~~~~~~~~~~~g~G~i 40 (310)
T COG0167 1 DLSTEILGLKFPNPLGLAA----GFDGKNGEELDALAALGFGAI 40 (310)
T ss_pred CCceeecceecCCCCeEcc----cCCccCHHHHHHHHhcCCceE
Confidence 4788999999999999965 332135666655555555543
No 54
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=79.74 E-value=6.2 Score=34.43 Aligned_cols=85 Identities=13% Similarity=0.101 Sum_probs=50.4
Q ss_pred ceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHH-------HhhCCCCceEEEEEeecC
Q psy13219 12 LTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEV-------RAQNPSTTLWLQMYIFKD 84 (193)
Q Consensus 12 t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei-------~~~~~~~~~wfQlY~~~d 84 (193)
|++||. ..||+.|||++ .. ...++.|+.++|-.-+++... .+.|++ .+.. +.+ |.+.+...
T Consensus 5 ~~~lgi--~~Pii~apM~~--~s----~~~la~avs~aGglG~l~~~~-~~~~~l~~~i~~~~~~t-~~p--fgvn~~~~ 72 (307)
T TIGR03151 5 CDLLGI--EYPIFQGGMAW--VA----TGSLAAAVSNAGGLGIIGAGN-APPDVVRKEIRKVKELT-DKP--FGVNIMLL 72 (307)
T ss_pred hHHhCC--CCCEEcCCCCC--CC----CHHHHHHHHhCCCcceecccc-CCHHHHHHHHHHHHHhc-CCC--cEEeeecC
Confidence 345654 48999999975 32 346788888888887887543 344433 3222 223 33333221
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeec
Q psy13219 85 RALSLQMVQRAERSGYSAIVITMD 108 (193)
Q Consensus 85 r~~~~~ll~RAe~AG~~AlvvTVD 108 (193)
.....+.++-+.++|++.+.++.-
T Consensus 73 ~~~~~~~~~~~~~~~v~~v~~~~g 96 (307)
T TIGR03151 73 SPFVDELVDLVIEEKVPVVTTGAG 96 (307)
T ss_pred CCCHHHHHHHHHhCCCCEEEEcCC
Confidence 112345677777889998887543
No 55
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=78.82 E-value=20 Score=31.25 Aligned_cols=24 Identities=29% Similarity=0.692 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHhcCCCCEEEec
Q psy13219 168 DDSVDWDDVRSLVQATKLPIVCKG 191 (193)
Q Consensus 168 ~~~~tW~di~wlr~~~~lPivlKG 191 (193)
.|.++.+-|+.+++.+++|||+-|
T Consensus 188 ~p~L~~~~L~~i~~~~~~PlVlHG 211 (286)
T COG0191 188 NPKLDFDRLKEIQEAVSLPLVLHG 211 (286)
T ss_pred CCCCCHHHHHHHHHHhCCCEEEeC
Confidence 578999999999999999999976
No 56
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=77.69 E-value=9.5 Score=29.22 Aligned_cols=74 Identities=26% Similarity=0.175 Sum_probs=49.1
Q ss_pred hHHHHHHHHHhccCceeeec-cCc-------ccc---HHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEE
Q psy13219 37 DGEVATARAAGMMDAIMILS-LMS-------TTS---LEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVI 105 (193)
Q Consensus 37 ~gE~~~araA~~~g~~~~ls-t~s-------s~s---~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~Alvv 105 (193)
+.....++.+.+.|+-++.. +.. ... ++++... .+.+...|+|.....+......++++++|+.+|.|
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l 90 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAE-TDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEI 90 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhh-cCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEE
Confidence 34467788888877644332 211 111 4455544 35678999998776665555568999999999999
Q ss_pred eeccCC
Q psy13219 106 TMDTAV 111 (193)
Q Consensus 106 TVD~pv 111 (193)
....+.
T Consensus 91 ~~~~~~ 96 (200)
T cd04722 91 HGAVGY 96 (200)
T ss_pred eccCCc
Confidence 988864
No 57
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=77.51 E-value=29 Score=31.11 Aligned_cols=67 Identities=15% Similarity=0.115 Sum_probs=45.4
Q ss_pred chhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCC
Q psy13219 27 PSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGY 100 (193)
Q Consensus 27 P~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~ 100 (193)
|-+++++. .+|=..+.+++.+.|++++..-+....+|.+.+.. -++|+=-.. -.+..||+.+.+.|-
T Consensus 143 p~sf~G~g-~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~~----d~lqIga~~--~~n~~LL~~va~t~k 209 (352)
T PRK13396 143 PYAFQGHG-ESALELLAAAREATGLGIITEVMDAADLEKIAEVA----DVIQVGARN--MQNFSLLKKVGAQDK 209 (352)
T ss_pred CcccCCch-HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhhC----CeEEECccc--ccCHHHHHHHHccCC
Confidence 45556654 45557888999999999999888889999887763 246663211 122467777766654
No 58
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=75.81 E-value=16 Score=31.87 Aligned_cols=24 Identities=21% Similarity=0.735 Sum_probs=16.3
Q ss_pred CCCCCHHHHHHHHhcCCCCEEEec
Q psy13219 168 DDSVDWDDVRSLVQATKLPIVCKG 191 (193)
Q Consensus 168 ~~~~tW~di~wlr~~~~lPivlKG 191 (193)
....+|+.|+.+++..+.||+.=|
T Consensus 167 ~~~a~w~~i~~i~~~~~ipvi~NG 190 (309)
T PF01207_consen 167 KGPADWEAIAEIKEALPIPVIANG 190 (309)
T ss_dssp TS---HHHHHHCHHC-TSEEEEES
T ss_pred CcccchHHHHHHhhcccceeEEcC
Confidence 346789999999999888888765
No 59
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=74.75 E-value=34 Score=29.17 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=33.2
Q ss_pred HHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219 40 VATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 40 ~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT 106 (193)
..+.+++++.|.|.++|+.-..+++|+..+ ++..++.|.+-|+|+
T Consensus 122 ~~LL~~~a~~gkPVilk~G~~~t~~e~~~A----------------------ve~i~~~Gn~~i~l~ 166 (260)
T TIGR01361 122 FELLKEVGKQGKPVLLKRGMGNTIEEWLYA----------------------AEYILSSGNGNVILC 166 (260)
T ss_pred HHHHHHHhcCCCcEEEeCCCCCCHHHHHHH----------------------HHHHHHcCCCcEEEE
Confidence 467788888888888888877778887655 445567788777774
No 60
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=74.50 E-value=21 Score=30.87 Aligned_cols=86 Identities=12% Similarity=0.036 Sum_probs=56.8
Q ss_pred CceeecchhccccCCchHHHHHHHHHhccCceee--eccCc---cccHHH-------HHhhCC-CCceEEEEEeecCHHH
Q psy13219 21 CPVGIAPSAMQKLAHADGEVATARAAGMMDAIMI--LSLMS---TTSLEE-------VRAQNP-STTLWLQMYIFKDRAL 87 (193)
Q Consensus 21 ~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~--lst~s---s~s~ee-------i~~~~~-~~~~wfQlY~~~dr~~ 87 (193)
.|.++.|+--.+-.+.++=..+.+-..+.|+--+ .+|.+ +.|.|| +.+... ..+...++- . +-+.
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~ 89 (303)
T PRK03620 12 LSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQ 89 (303)
T ss_pred EEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHH
Confidence 5778888865555566666777777777776443 34433 344443 333332 345566664 3 6677
Q ss_pred HHHHHHHHHHcCCcEEEEeec
Q psy13219 88 SLQMVQRAERSGYSAIVITMD 108 (193)
Q Consensus 88 ~~~ll~RAe~AG~~AlvvTVD 108 (193)
+.++.++|+++|+.++++.--
T Consensus 90 ~i~~~~~a~~~Gadav~~~pP 110 (303)
T PRK03620 90 AIEYAQAAERAGADGILLLPP 110 (303)
T ss_pred HHHHHHHHHHhCCCEEEECCC
Confidence 889999999999999998543
No 61
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=74.38 E-value=8.5 Score=33.20 Aligned_cols=24 Identities=4% Similarity=0.195 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCcEEEEeeccC
Q psy13219 87 LSLQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 87 ~~~~ll~RAe~AG~~AlvvTVD~p 110 (193)
.+.+++++++++|.+-.+-|||.+
T Consensus 249 ~~~~~v~~~~~~G~~v~vWTVNd~ 272 (300)
T cd08612 249 MRPSLFRHLQKRGIQVYGWVLNDE 272 (300)
T ss_pred CCHHHHHHHHHCCCEEEEeecCCH
Confidence 467899999999999999999975
No 62
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=74.37 E-value=20 Score=31.14 Aligned_cols=71 Identities=15% Similarity=0.282 Sum_probs=44.4
Q ss_pred CchHHHHHHHHHhccCceeeeccCcc----ccHHHHH-------hhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEE
Q psy13219 35 HADGEVATARAAGMMDAIMILSLMST----TSLEEVR-------AQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAI 103 (193)
Q Consensus 35 ~~~gE~~~araA~~~g~~~~lst~ss----~s~eei~-------~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~Al 103 (193)
+.+-=.++.+||.+.+.|.++...-. ..++.+. +.. ..| +.+.=|.....+.+++|-++||+.+
T Consensus 27 n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~-~vP----V~lHLDH~~~~e~i~~Ai~~GftSV 101 (283)
T PRK07998 27 NLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKM-DVP----VSLHLDHGKTFEDVKQAVRAGFTSV 101 (283)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHC-CCC----EEEECcCCCCHHHHHHHHHcCCCEE
Confidence 33444688899999999988865321 2233332 222 223 2334466667788888889999998
Q ss_pred EEeeccCCC
Q psy13219 104 VITMDTAVL 112 (193)
Q Consensus 104 vvTVD~pv~ 112 (193)
++ |....
T Consensus 102 M~--DgS~l 108 (283)
T PRK07998 102 MI--DGAAL 108 (283)
T ss_pred EE--eCCCC
Confidence 87 65443
No 63
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=73.58 E-value=23 Score=31.01 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=33.7
Q ss_pred CCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCC
Q psy13219 72 STTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAV 111 (193)
Q Consensus 72 ~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv 111 (193)
+.+.-.||. -.|.+...+..++++++||..|=|..-.|+
T Consensus 62 e~p~~vQl~-g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~ 100 (312)
T PRK10550 62 GTLVRIQLL-GQYPQWLAENAARAVELGSWGVDLNCGCPS 100 (312)
T ss_pred CCcEEEEec-cCCHHHHHHHHHHHHHcCCCEEEEeCCCCc
Confidence 457889996 677888888899999999999999999986
No 64
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=73.08 E-value=15 Score=30.81 Aligned_cols=76 Identities=11% Similarity=0.240 Sum_probs=48.2
Q ss_pred ccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeec
Q psy13219 30 MQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMD 108 (193)
Q Consensus 30 ~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD 108 (193)
+.++-.|.-=-++.|.|.+.|+.-+...........+...+.+...|..++...|-+ +.++..++.||+-+..+..
T Consensus 24 Ld~V~~p~NlGAIiRta~AfGv~~V~~v~~~~~~~~~~~~s~Ga~~wv~i~~~~~~~---~~i~~lk~~g~~i~at~~~ 99 (229)
T PRK11081 24 MEQVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTMGSTAAGSNSWVQVKTHRTIG---DAVAHLKGQGMQILATHLS 99 (229)
T ss_pred EeCCCCcchHHHHHHHHHHhCCCeEEEecCCCccchhhhhcCCchheEEEEEeCCHH---HHHHHHHhCCCEEEEEeCC
Confidence 334434433358999999999976633333333444433444567899998877654 5666667889987776653
No 65
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=72.07 E-value=29 Score=29.65 Aligned_cols=86 Identities=10% Similarity=0.002 Sum_probs=56.1
Q ss_pred CceeecchhccccCCchHHHHHHHHHhccCceee--eccCc---cccHHH-------HHhhCC-CCceEEEEEeecCHHH
Q psy13219 21 CPVGIAPSAMQKLAHADGEVATARAAGMMDAIMI--LSLMS---TTSLEE-------VRAQNP-STTLWLQMYIFKDRAL 87 (193)
Q Consensus 21 ~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~--lst~s---s~s~ee-------i~~~~~-~~~~wfQlY~~~dr~~ 87 (193)
.|.++.|+.-.+-.+.++=....+-..+.|+--+ .+|.+ +.|.|| +.+... ..+.+.++.- .+-+.
T Consensus 6 ~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~ 84 (292)
T PRK03170 6 ITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAE 84 (292)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHH
Confidence 4677788766665677776778888777776443 34433 344443 333333 2345555542 35677
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q psy13219 88 SLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 88 ~~~ll~RAe~AG~~AlvvTV 107 (193)
+.++.+.|+++|+.++++.-
T Consensus 85 ~i~~a~~a~~~G~d~v~~~p 104 (292)
T PRK03170 85 AIELTKFAEKAGADGALVVT 104 (292)
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 88899999999999999974
No 66
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=71.55 E-value=27 Score=30.77 Aligned_cols=67 Identities=15% Similarity=0.127 Sum_probs=45.2
Q ss_pred CchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecc
Q psy13219 35 HADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDT 109 (193)
Q Consensus 35 ~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~ 109 (193)
.|+.-...|+-+.+.| .-++=-..-+|...|.....+. .+.+|+++..++|+..+++.- -+-|||=.
T Consensus 77 dp~~l~eaA~~~~~~g-~~~IdlN~GCP~~~V~~~g~Ga------~Ll~~p~lv~~iv~a~~~av~-~iPVTVKi 143 (323)
T COG0042 77 DPELLAEAAKIAEELG-ADIIDLNCGCPSPKVVKGGAGA------ALLKNPELLAEIVKAMVEAVG-DIPVTVKI 143 (323)
T ss_pred CHHHHHHHHHHHHhcC-CCEEeeeCCCChHHhcCCCcch------hhcCCHHHHHHHHHHHHHhhC-CCCeEEEE
Confidence 4445567777777777 4555555567888887665332 567889999999988877644 55666653
No 67
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=71.38 E-value=5.5 Score=26.18 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHcCCcEEEEeecc
Q psy13219 87 LSLQMVQRAERSGYSAIVITMDT 109 (193)
Q Consensus 87 ~~~~ll~RAe~AG~~AlvvTVD~ 109 (193)
..++++++|++.|++++++|==.
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCC
Confidence 36689999999999999998443
No 68
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=70.72 E-value=6.1 Score=27.55 Aligned_cols=27 Identities=7% Similarity=0.233 Sum_probs=21.1
Q ss_pred CH-HHHHHHHHHHHHcCCcEEE-EeeccC
Q psy13219 84 DR-ALSLQMVQRAERSGYSAIV-ITMDTA 110 (193)
Q Consensus 84 dr-~~~~~ll~RAe~AG~~Alv-vTVD~p 110 (193)
|. +..++|.+||++.|+.|++ +.+|+.
T Consensus 26 d~d~Al~eM~e~A~~lGAnAVVGvr~d~s 54 (74)
T TIGR03884 26 NVDEIVENLREKVKAKGGMGLIAFRITCA 54 (74)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEEEEcC
Confidence 44 5678999999999999975 666654
No 69
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=70.28 E-value=66 Score=27.19 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=26.0
Q ss_pred CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219 73 TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 73 ~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT 106 (193)
-+.+.-+-..-+.+.+.+++++++++|+.+|+++
T Consensus 163 ~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 163 IPLLVKLSPYFDLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 3556555555566678899999999999999886
No 70
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=70.12 E-value=35 Score=29.31 Aligned_cols=85 Identities=6% Similarity=-0.006 Sum_probs=56.3
Q ss_pred CceeecchhccccCCchHHHHHHHHHhccCceee--eccCc---cccHHHH-------HhhC-CCCceEEEEEeecCHHH
Q psy13219 21 CPVGIAPSAMQKLAHADGEVATARAAGMMDAIMI--LSLMS---TTSLEEV-------RAQN-PSTTLWLQMYIFKDRAL 87 (193)
Q Consensus 21 ~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~--lst~s---s~s~eei-------~~~~-~~~~~wfQlY~~~dr~~ 87 (193)
.|.++.|+--.+-++.++=..+.+-..+.|+--+ .+|.+ +.|.||- .+.. +..+...++- .+-+.
T Consensus 10 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ 87 (296)
T TIGR03249 10 LSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSD 87 (296)
T ss_pred EEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHH
Confidence 4667788755555577777788888888875544 44443 3444433 2222 2346677774 35677
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q psy13219 88 SLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 88 ~~~ll~RAe~AG~~AlvvTV 107 (193)
+.++.+.|+++|+.++++.-
T Consensus 88 ai~~a~~a~~~Gadav~~~p 107 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLLLP 107 (296)
T ss_pred HHHHHHHHHHhCCCEEEECC
Confidence 78899999999999998854
No 71
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=69.99 E-value=19 Score=30.34 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCCcEEEEeeccCC
Q psy13219 87 LSLQMVQRAERSGYSAIVITMDTAV 111 (193)
Q Consensus 87 ~~~~ll~RAe~AG~~AlvvTVD~pv 111 (193)
.+.+++++++++|.+-.+-|||.+.
T Consensus 216 ~~~~~v~~~~~~G~~v~vWTVn~~~ 240 (258)
T cd08573 216 ISSAYVRYWRARGIRVIAWTVNTPT 240 (258)
T ss_pred cCHHHHHHHHHCCCEEEEEecCCHH
Confidence 5678999999999999999999863
No 72
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=69.94 E-value=38 Score=29.12 Aligned_cols=86 Identities=12% Similarity=0.030 Sum_probs=53.9
Q ss_pred CceeecchhccccCCchHHHHHHHHHhccC-c--eeeeccCc---cccHHHHH-------hhCC-CCceEEEEEeecCHH
Q psy13219 21 CPVGIAPSAMQKLAHADGEVATARAAGMMD-A--IMILSLMS---TTSLEEVR-------AQNP-STTLWLQMYIFKDRA 86 (193)
Q Consensus 21 ~P~~iaP~g~~~l~~~~gE~~~araA~~~g-~--~~~lst~s---s~s~eei~-------~~~~-~~~~wfQlY~~~dr~ 86 (193)
.|..+.|+--.+-.+.++=....+-..+.| + .++.+|.+ +.|.||-. +... .-+..+++-- .+-+
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~~t~ 83 (290)
T TIGR00683 5 FSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS-VNLK 83 (290)
T ss_pred EeeeecCCCCCCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHH
Confidence 366777876555556666667777777776 4 34444433 45555432 2222 2344565542 3456
Q ss_pred HHHHHHHHHHHcCCcEEEEee
Q psy13219 87 LSLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 87 ~~~~ll~RAe~AG~~AlvvTV 107 (193)
.+.++.+.|+++|+.++++.-
T Consensus 84 ~~i~la~~a~~~Gad~v~v~~ 104 (290)
T TIGR00683 84 EAVELGKYATELGYDCLSAVT 104 (290)
T ss_pred HHHHHHHHHHHhCCCEEEEeC
Confidence 678899999999999999954
No 73
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=69.37 E-value=31 Score=30.89 Aligned_cols=74 Identities=11% Similarity=0.117 Sum_probs=46.3
Q ss_pred chHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCH---------------HHHHHHHHHHHHcCC
Q psy13219 36 ADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDR---------------ALSLQMVQRAERSGY 100 (193)
Q Consensus 36 ~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr---------------~~~~~ll~RAe~AG~ 100 (193)
.+.|....+...+.+....+..++....++|..+...+..++.++.+.+. +...+.++.|++.|+
T Consensus 51 ~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~ 130 (378)
T PRK11858 51 SEDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGL 130 (378)
T ss_pred ChHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34565566666666666666666555566665554445678888887655 455667888888888
Q ss_pred cEEEEeecc
Q psy13219 101 SAIVITMDT 109 (193)
Q Consensus 101 ~AlvvTVD~ 109 (193)
...+-..|.
T Consensus 131 ~v~~~~ed~ 139 (378)
T PRK11858 131 YVSFSAEDA 139 (378)
T ss_pred eEEEEeccC
Confidence 644432343
No 74
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=67.14 E-value=51 Score=28.81 Aligned_cols=21 Identities=10% Similarity=0.379 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEe
Q psy13219 86 ALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 86 ~~~~~ll~RAe~AG~~AlvvT 106 (193)
+...+++++++++|+.+|.|.
T Consensus 148 ~~~~~~a~~l~~~Gvd~i~Vh 168 (312)
T PRK10550 148 ERKFEIADAVQQAGATELVVH 168 (312)
T ss_pred hHHHHHHHHHHhcCCCEEEEC
Confidence 345677777788887777664
No 75
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=67.10 E-value=42 Score=28.40 Aligned_cols=85 Identities=14% Similarity=0.022 Sum_probs=53.8
Q ss_pred CceeecchhccccCCchHHHHHHHHHhccCceee--eccCc---cccHHHH-------HhhCC-CCceEEEEEeecCHHH
Q psy13219 21 CPVGIAPSAMQKLAHADGEVATARAAGMMDAIMI--LSLMS---TTSLEEV-------RAQNP-STTLWLQMYIFKDRAL 87 (193)
Q Consensus 21 ~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~--lst~s---s~s~eei-------~~~~~-~~~~wfQlY~~~dr~~ 87 (193)
.|..+.|+--.+-.+.++=....+-..+.|+--+ .+|.+ +.|.||- ++... ..+.+.++-- .+-+.
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~ 83 (284)
T cd00950 5 ITALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS-NNTAE 83 (284)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC-ccHHH
Confidence 3666777765555677776777777777776433 34433 3444332 23333 2345555542 35567
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q psy13219 88 SLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 88 ~~~ll~RAe~AG~~AlvvT 106 (193)
+.++.+.|+++|+.++++.
T Consensus 84 ~~~~a~~a~~~G~d~v~~~ 102 (284)
T cd00950 84 AIELTKRAEKAGADAALVV 102 (284)
T ss_pred HHHHHHHHHHcCCCEEEEc
Confidence 7889999999999999988
No 76
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=66.15 E-value=39 Score=26.14 Aligned_cols=73 Identities=7% Similarity=-0.043 Sum_probs=47.7
Q ss_pred CchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCC--CceEEEEEeec---CHHHHHHHHHHHHHcCCcEEEEeecc
Q psy13219 35 HADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPS--TTLWLQMYIFK---DRALSLQMVQRAERSGYSAIVITMDT 109 (193)
Q Consensus 35 ~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~--~~~wfQlY~~~---dr~~~~~ll~RAe~AG~~AlvvTVD~ 109 (193)
..+.-..+++.+.+.|+..+.-+. .-++.+.+..++ .+...++.-.. .-+.+.+++++|+++|+.++.++...
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~ 88 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINI 88 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccH
Confidence 444556788888888876655443 445555555443 34455554322 14667789999999999999997653
No 77
>PRK02227 hypothetical protein; Provisional
Probab=66.07 E-value=56 Score=27.76 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=44.7
Q ss_pred ecchhccccCCchHHHHHHHHHhccCceee-eccCccccH----HHHH---hh---CCCCceEEEEEeecCHH-----HH
Q psy13219 25 IAPSAMQKLAHADGEVATARAAGMMDAIMI-LSLMSTTSL----EEVR---AQ---NPSTTLWLQMYIFKDRA-----LS 88 (193)
Q Consensus 25 iaP~g~~~l~~~~gE~~~araA~~~g~~~~-lst~ss~s~----eei~---~~---~~~~~~wfQlY~~~dr~-----~~ 88 (193)
+|.+-+--=.+|+.=...+.+++..|+-|+ ++-+..... |.+. .+ ...+..+.-.. +.|.. --
T Consensus 55 vSAtiGD~p~~p~~~~~aa~~~a~~GvDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~-yaD~~r~~~~~~ 133 (238)
T PRK02227 55 VSATIGDVPYKPGTISLAALGAAATGADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAG-YADAHRVGSVSP 133 (238)
T ss_pred ceeeccCCCCCchHHHHHHHHHHhhCCCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEE-ecccccccCCCh
Confidence 344433323355222345566777888777 554433332 2221 11 12234555443 33433 33
Q ss_pred HHHHHHHHHcCCcEEEEeeccC
Q psy13219 89 LQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 89 ~~ll~RAe~AG~~AlvvTVD~p 110 (193)
.++++.|.++||..++| ||.
T Consensus 134 ~~l~~~a~~aGf~g~Ml--DTa 153 (238)
T PRK02227 134 LSLPAIAADAGFDGAML--DTA 153 (238)
T ss_pred HHHHHHHHHcCCCEEEE--ecc
Confidence 57899999999999876 765
No 78
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=66.06 E-value=54 Score=27.61 Aligned_cols=86 Identities=13% Similarity=0.082 Sum_probs=52.6
Q ss_pred CceeecchhccccCCchHHHHHHHHHhccCcee--eeccCc---cccHHH-------HHhhCC-CCceEEEEEeecCHHH
Q psy13219 21 CPVGIAPSAMQKLAHADGEVATARAAGMMDAIM--ILSLMS---TTSLEE-------VRAQNP-STTLWLQMYIFKDRAL 87 (193)
Q Consensus 21 ~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~--~lst~s---s~s~ee-------i~~~~~-~~~~wfQlY~~~dr~~ 87 (193)
.|..+.|+--.+-++.++=....+-..+.|+-- +.+|.+ +.|.|| +.+... ..+...++-- .+-+.
T Consensus 2 ~~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~ 80 (281)
T cd00408 2 IPALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA-NSTRE 80 (281)
T ss_pred CCCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC-ccHHH
Confidence 356677876555566666677777777766543 344443 334433 233333 3344555432 24456
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q psy13219 88 SLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 88 ~~~ll~RAe~AG~~AlvvTV 107 (193)
+.++.+.|+++|+.++++.-
T Consensus 81 ~i~~a~~a~~~Gad~v~v~p 100 (281)
T cd00408 81 AIELARHAEEAGADGVLVVP 100 (281)
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 78899999999999999953
No 79
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=65.59 E-value=41 Score=29.52 Aligned_cols=83 Identities=13% Similarity=0.147 Sum_probs=51.9
Q ss_pred ceeecchhccccCCchHHHHHHHHHhccCc-eeeeccC-ccc-----cHHHHHhhC-CCCceEEEEEeecCHHHHHHHHH
Q psy13219 22 PVGIAPSAMQKLAHADGEVATARAAGMMDA-IMILSLM-STT-----SLEEVRAQN-PSTTLWLQMYIFKDRALSLQMVQ 93 (193)
Q Consensus 22 P~~iaP~g~~~l~~~~gE~~~araA~~~g~-~~~lst~-ss~-----s~eei~~~~-~~~~~wfQlY~~~dr~~~~~ll~ 93 (193)
||++|||++. .+...-+.|...|. -++.+-+ +.. ...+..... .+.+.-+||. -.|.+...+..+
T Consensus 2 ~~~lAPM~g~------Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~~~aA~ 74 (318)
T TIGR00742 2 RFSVAPMLDW------TDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLG-GSDPNDLAKCAK 74 (318)
T ss_pred CEEEECCCCC------cCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEc-cCCHHHHHHHHH
Confidence 7899997543 23444555566665 2333322 111 112222222 2567889996 677888888999
Q ss_pred HHHHcCCcEEEEeeccCC
Q psy13219 94 RAERSGYSAIVITMDTAV 111 (193)
Q Consensus 94 RAe~AG~~AlvvTVD~pv 111 (193)
+++++||..|=|..-.|+
T Consensus 75 ~~~~~g~d~IDlN~GCP~ 92 (318)
T TIGR00742 75 IAEKRGYDEINLNVGCPS 92 (318)
T ss_pred HHHhCCCCEEEEECCCCH
Confidence 999999999888887764
No 80
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=65.54 E-value=24 Score=31.62 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=34.1
Q ss_pred CCCCCCcceE-CCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHH
Q psy13219 5 VCDRDSGLTV-LGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLE 64 (193)
Q Consensus 5 v~~~d~~t~~-lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~e 64 (193)
..++|+++.+ =+.++..||+-|||- .. .|..+|.+-++.|-..++-- +.++|
T Consensus 21 ~~dv~~~~~~~~~~~l~iPivsa~MD--tV----te~~mAiama~~Gglgvih~--~~~~e 73 (352)
T PF00478_consen 21 RSDVSLSTKLTRNITLKIPIVSAPMD--TV----TESEMAIAMARLGGLGVIHR--NMSIE 73 (352)
T ss_dssp GGG-BEEEESSTSEEESSSEEE-SST--TT----SSHHHHHHHHHTTSEEEEES--SSCHH
T ss_pred HhheECcccccCCEeecCceEecCcc--cc----chHHHHHHHHHhcCCceecC--CCCHH
Confidence 3445555445 478999999999953 22 56678888888888877754 34544
No 81
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=65.53 E-value=14 Score=30.56 Aligned_cols=70 Identities=13% Similarity=0.247 Sum_probs=44.2
Q ss_pred HHHHHHhccC----ceeeeccCccccHHHHHhhCCCCceEEEEEe----------------------ecCHHHHHHHHHH
Q psy13219 41 ATARAAGMMD----AIMILSLMSTTSLEEVRAQNPSTTLWLQMYI----------------------FKDRALSLQMVQR 94 (193)
Q Consensus 41 ~~araA~~~g----~~~~lst~ss~s~eei~~~~~~~~~wfQlY~----------------------~~dr~~~~~ll~R 94 (193)
.+.+...+.+ --.+++|++..+++.+.+..|....++.+|. ......+.+++++
T Consensus 121 ~l~~~~~~~~~~~~~~v~~~SF~~~~L~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 200 (237)
T cd08583 121 YIVKEAKEVDPDLLDRVIPQIYNEEMYEAIMSIYPFKSVIYTLYRQDSIRLDEIIAFCYENGIKAVTISKNYVNDKLIEK 200 (237)
T ss_pred HHHHHHHhhcccccceeEEEecCHHHHHHHHHhCCCcceeeEeccccccchHHHHHHHHHcCCcEEEechhhcCHHHHHH
Confidence 4555554432 2467889988888888877653222222211 1112345688888
Q ss_pred HHHcCCcEEEEeeccC
Q psy13219 95 AERSGYSAIVITMDTA 110 (193)
Q Consensus 95 Ae~AG~~AlvvTVD~p 110 (193)
++++|.+-.+-|||.+
T Consensus 201 ~~~~Gl~v~vwTVn~~ 216 (237)
T cd08583 201 LNKAGIYVYVYTINDL 216 (237)
T ss_pred HHHCCCEEEEEeCCCH
Confidence 8888999888998875
No 82
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=65.50 E-value=36 Score=28.34 Aligned_cols=86 Identities=16% Similarity=0.162 Sum_probs=41.3
Q ss_pred eCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccc------cHHHHHhhCCCCceEEEEEeecCHHHHHHHH
Q psy13219 19 YRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTT------SLEEVRAQNPSTTLWLQMYIFKDRALSLQMV 92 (193)
Q Consensus 19 ~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~------s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll 92 (193)
+..|+...++.+. ..+-+..+.++..+.++-.+++ ..-. =+|.+++..+- ...|.| |.+|++ +++
T Consensus 57 lgipl~~~~~~g~---~~~~~~~l~~~l~~~~v~~vv~-GdI~~~~~r~~~e~vc~~lGl-~~~~PL-W~~d~~---~ll 127 (218)
T PF01902_consen 57 LGIPLIEIPTSGD---EEDYVEDLKEALKELKVEAVVF-GDIDSEYQRNWVERVCERLGL-EAVFPL-WGRDRE---ELL 127 (218)
T ss_dssp HT--EEEEEE------CCCHHHHHHHHHCTC--SEEE---TTS-HHHHHHHHHHHHHCT--EEE-TT-TT--HH---HHH
T ss_pred CCCCEEEEEccCc---cchhhHHHHHHHHHcCCCEEEE-CcCCcHHHHHHHHHHHHHcCC-EEEecc-cCCCHH---HHH
Confidence 4557777666422 2233456677777788655443 2221 25666666541 111111 123443 455
Q ss_pred HHHHHcCCcEEEEeeccCCCC
Q psy13219 93 QRAERSGYSAIVITMDTAVLG 113 (193)
Q Consensus 93 ~RAe~AG~~AlvvTVD~pv~G 113 (193)
++.-+.||+++++.||+..++
T Consensus 128 ~e~i~~Gf~aiIv~V~~~~L~ 148 (218)
T PF01902_consen 128 REFIESGFEAIIVKVDADGLD 148 (218)
T ss_dssp HHHHHTT-EEEEEEEESTT--
T ss_pred HHHHHCCCeEEEEEEeccCCC
Confidence 555688999999999997553
No 83
>PRK08227 autoinducer 2 aldolase; Validated
Probab=65.07 E-value=37 Score=29.20 Aligned_cols=88 Identities=23% Similarity=0.199 Sum_probs=47.4
Q ss_pred ceeCCceeecchhccccCCchHH--HHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHH
Q psy13219 17 TRYRCPVGIAPSAMQKLAHADGE--VATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQR 94 (193)
Q Consensus 17 ~~~~~P~~iaP~g~~~l~~~~gE--~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~R 94 (193)
+++.+|+++ ...-.+-..-+-+ ...||.|++.|.=++=-.+...++++|.++++ .+.-+.==...+.+...++++.
T Consensus 137 ~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~~~~f~~vv~a~~-vPVviaGG~k~~~~~~L~~v~~ 214 (264)
T PRK08227 137 LRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYYVEEGFERITAGCP-VPIVIAGGKKLPERDALEMCYQ 214 (264)
T ss_pred HHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEecCCCHHHHHHHHHcCC-CcEEEeCCCCCCHHHHHHHHHH
Confidence 356678766 3221111111222 24567777777444433333368888888764 2221111112244556778888
Q ss_pred HHHcCCcEEEEe
Q psy13219 95 AERSGYSAIVIT 106 (193)
Q Consensus 95 Ae~AG~~AlvvT 106 (193)
|-++|+..+++-
T Consensus 215 ai~aGa~Gv~~G 226 (264)
T PRK08227 215 AIDEGASGVDMG 226 (264)
T ss_pred HHHcCCceeeec
Confidence 888999887653
No 84
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=64.73 E-value=4.2 Score=36.65 Aligned_cols=72 Identities=15% Similarity=0.075 Sum_probs=42.0
Q ss_pred eeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHH
Q psy13219 18 RYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQR 94 (193)
Q Consensus 18 ~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~R 94 (193)
++..||+++.|++..| -.+.-.++|+||...|+.+..+-.. .+-|+.... . ....+|+ -...-..+.+.+++
T Consensus 63 ~l~~p~~is~MS~GaL-S~~a~~Ala~ga~~~G~~~ntGEGg-~~~~~~~~~-~-~~~I~Q~-~sg~fGv~~~~l~~ 134 (368)
T PF01645_consen 63 ELSIPFMISAMSYGAL-SEEAKEALAKGANMAGTASNTGEGG-ELPEERKAA-K-DLRIKQI-ASGRFGVRPEYLKQ 134 (368)
T ss_dssp HHHTTEEEEEB-CTTC--HHHHHHHHHHHHHCT-EEEETTT----GGGCSB--T-TSSEEEE--TT-TT--HHHHCC
T ss_pred hheeeeecccCChhhc-CHHHHHHHHHHHHHhCceEecCCCC-CCHHHhccc-C-CceEEEc-CCCCCCCCHHHhcC
Confidence 3789999999998876 5678899999999999998888765 333333322 1 1225674 33333444444433
No 85
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=61.79 E-value=79 Score=26.63 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=39.5
Q ss_pred HHHHHHhccCceeeeccCccccHHHHHhhCCCCceEE--EEEeecCHHHHHHHHHHHHHcCCcEEEEeeccC
Q psy13219 41 ATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWL--QMYIFKDRALSLQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 41 ~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wf--QlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~p 110 (193)
.+.+-+...++|.+++. .-.++|++.+....+...+ --....|.+..++++++. |-..+++.+|..
T Consensus 65 ~i~~i~~~~~~pv~~gG-Gi~s~~d~~~l~~~G~~~vvigs~~~~~~~~~~~~~~~~---~~~~i~vsiD~k 132 (258)
T PRK01033 65 LIENLASECFMPLCYGG-GIKTLEQAKKIFSLGVEKVSINTAALEDPDLITEAAERF---GSQSVVVSIDVK 132 (258)
T ss_pred HHHHHHHhCCCCEEECC-CCCCHHHHHHHHHCCCCEEEEChHHhcCHHHHHHHHHHh---CCCcEEEEEEEe
Confidence 45555666789988876 5578888765432222222 112345666666665443 545699999985
No 86
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed
Probab=61.73 E-value=33 Score=29.33 Aligned_cols=56 Identities=14% Similarity=0.255 Sum_probs=44.1
Q ss_pred ceeeeccCccccHHHHHhhCCC----------CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219 51 AIMILSLMSTTSLEEVRAQNPS----------TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 51 ~~~~lst~ss~s~eei~~~~~~----------~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT 106 (193)
--++.-......+|+|.+..|+ ..-|+.+...-+++...+++.+-+++|++.|+++
T Consensus 215 ~k~~~~~~~~~~~~~~~~~~p~~~~ptv~~~~~~~~~av~~~~~~~~~~~~~~~l~~~ga~~i~~~ 280 (287)
T PRK00489 215 SKYLMMNAPKEKLDAVIALLPGLESPTVSPLGDEGWVAVHAVVPEDLVWELMDKLKALGARGILVL 280 (287)
T ss_pred eEEEEEeCCHHHHHHHHHhCCCCCCCcccCCCCCCeEEEEEEECHHHHHHHHHHHHHcCCCeEEEe
Confidence 3344445566788999876431 1259999999999999999999999999999886
No 87
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=61.07 E-value=65 Score=27.40 Aligned_cols=86 Identities=13% Similarity=-0.019 Sum_probs=51.8
Q ss_pred CceeecchhccccCCchHHHHHHHHHhccCceee--eccCc---cccHHH-------HHhhCC-CCceEEEEEeecCHHH
Q psy13219 21 CPVGIAPSAMQKLAHADGEVATARAAGMMDAIMI--LSLMS---TTSLEE-------VRAQNP-STTLWLQMYIFKDRAL 87 (193)
Q Consensus 21 ~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~--lst~s---s~s~ee-------i~~~~~-~~~~wfQlY~~~dr~~ 87 (193)
+|.++.|+--.+-.+.++=..+.+-..+.|+--+ .+|.+ +.|.|| +.+... ..+.+.++-- .+-+.
T Consensus 3 ~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~s~~~ 81 (285)
T TIGR00674 3 ITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGS-NATEE 81 (285)
T ss_pred cCceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCC-ccHHH
Confidence 4667778755555566665666666666665433 34433 333332 223222 3455665532 24456
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q psy13219 88 SLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 88 ~~~ll~RAe~AG~~AlvvTV 107 (193)
+.++.+.|+++|+.+++++-
T Consensus 82 ~i~~a~~a~~~Gad~v~v~p 101 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVVT 101 (285)
T ss_pred HHHHHHHHHHcCCCEEEEcC
Confidence 77899999999999999975
No 88
>COG1591 Holliday junction resolvase - archaeal type [DNA replication, recombination, and repair]
Probab=59.89 E-value=31 Score=26.85 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=49.8
Q ss_pred chHHHHHHHHHhccCceeeec--cC-ccccHHHHHhhCCCCceEEEEEe------ecCHHHHHHHHHHHHHcCCcEEE
Q psy13219 36 ADGEVATARAAGMMDAIMILS--LM-STTSLEEVRAQNPSTTLWLQMYI------FKDRALSLQMVQRAERSGYSAIV 104 (193)
Q Consensus 36 ~~gE~~~araA~~~g~~~~ls--t~-ss~s~eei~~~~~~~~~wfQlY~------~~dr~~~~~ll~RAe~AG~~Alv 104 (193)
...|+.+++.-.+.|-..+=+ |. |..++-||.+..++...-|-+-. +=|++.++.|+.-|+..|.++++
T Consensus 7 ~~~EReLv~~L~e~GfAvvR~paSG~sk~p~pDivA~~g~~~l~iE~K~~~~~kiYl~~e~ve~L~~FA~~fGg~p~i 84 (137)
T COG1591 7 SRFERELVRILWERGFAVVRAPASGGSKRPLPDIVAGNGGVYLAIEVKSRRETKIYLDKEQVEKLVEFARRFGGEPYI 84 (137)
T ss_pred chHHHHHHHHHHhcCceEEEcccCCCCCCCCCCEEecCCCEEEEEEEEeccCCcEEEcHHHHHHHHHHHHHcCCceEE
Confidence 357999999999999888877 55 45667788766544333333222 12778999999999999998753
No 89
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=59.72 E-value=40 Score=28.93 Aligned_cols=71 Identities=14% Similarity=0.112 Sum_probs=48.1
Q ss_pred HHHHHHHHhccCc-----eeeeccCccccHHHHHhhCCCCceEEEEEe-------------------------------e
Q psy13219 39 EVATARAAGMMDA-----IMILSLMSTTSLEEVRAQNPSTTLWLQMYI-------------------------------F 82 (193)
Q Consensus 39 E~~~araA~~~g~-----~~~lst~ss~s~eei~~~~~~~~~wfQlY~-------------------------------~ 82 (193)
+..+.+.-.+.|. ..+++|+....+.++.+..|+-+..|-+.. .
T Consensus 149 ~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~r~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 228 (296)
T cd08559 149 EEKLLEVLKKYGYTGKNDPVFIQSFEPESLKRLRNETPDIPLVQLIDYGDWAETDKKYTYAWLTTDAGLKEIAKYADGIG 228 (296)
T ss_pred HHHHHHHHHHcCCCCCCCCEEEecCCHHHHHHHHHhCCCCcEEEEecCCCCCccccccccchhcCHHHHHHHHHHhhhhC
Confidence 4466666666664 478999999999999887664333221100 0
Q ss_pred cC-HHHH----------HHHHHHHHHcCCcEEEEeecc
Q psy13219 83 KD-RALS----------LQMVQRAERSGYSAIVITMDT 109 (193)
Q Consensus 83 ~d-r~~~----------~~ll~RAe~AG~~AlvvTVD~ 109 (193)
-+ .-.+ .+++++|+++|.+-.+-|||.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~v~~a~~~Gl~v~~WTvn~ 266 (296)
T cd08559 229 PWKSLIIPEDSNGLLVPTDLVKDAHKAGLLVHPYTFRN 266 (296)
T ss_pred CCHHhccccccccccCchHHHHHHHHcCCEEEEEEecC
Confidence 01 1122 689999999999999999997
No 90
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=59.67 E-value=31 Score=30.91 Aligned_cols=54 Identities=19% Similarity=0.136 Sum_probs=39.1
Q ss_pred CCCCCcceEC-----CceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHH
Q psy13219 6 CDRDSGLTVL-----GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVR 67 (193)
Q Consensus 6 ~~~d~~t~~l-----G~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~ 67 (193)
+++|++.+|- -+.+..||+-|+|- --+|..+|.+-++.|..+++-- +.++|+-+
T Consensus 27 sevdl~~~~~~~~~~~~~~giPii~AnMd------TV~~~~mA~~la~~g~~~~iHk--~~~~e~~~ 85 (346)
T PRK05096 27 SDVELERQFTFKHSGQSWSGVPIIAANMD------TVGTFEMAKALASFDILTAVHK--HYSVEEWA 85 (346)
T ss_pred HHceecceeeeecccccccCCceEecCCC------ccccHHHHHHHHHCCCeEEEec--CCCHHHHH
Confidence 5678766654 34567999988752 2378899999999999999844 55777643
No 91
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=59.56 E-value=57 Score=26.59 Aligned_cols=71 Identities=13% Similarity=0.211 Sum_probs=45.4
Q ss_pred HHHHHHHhccC--ceeeeccCccccHHHHHhhCCCCceEEEEE-------------------eecCHH--------HHHH
Q psy13219 40 VATARAAGMMD--AIMILSLMSTTSLEEVRAQNPSTTLWLQMY-------------------IFKDRA--------LSLQ 90 (193)
Q Consensus 40 ~~~araA~~~g--~~~~lst~ss~s~eei~~~~~~~~~wfQlY-------------------~~~dr~--------~~~~ 90 (193)
..+++...+.+ =..++||+....++.+.+..|..+..+=++ +.-+.. .+.+
T Consensus 106 ~~~~~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (226)
T cd08568 106 EPVLEIVEKFNALDRVIFSSFNHDALRELRKLDPDAKVGLLIGEEEEGFSIPELHEKLKLYSLHVPIDAIGYIGFEKFVE 185 (226)
T ss_pred HHHHHHHHHcCCCCcEEEEECCHHHHHHHHHhCCCCcEEEEeeccccccCHHHHHHhcCCcEeccchhhhccccccccHH
Confidence 44555555554 356888888888888887766432221110 001111 1368
Q ss_pred HHHHHHHcCCcEEEEeeccC
Q psy13219 91 MVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 91 ll~RAe~AG~~AlvvTVD~p 110 (193)
++++++++|.+..+.|||.+
T Consensus 186 ~v~~~~~~G~~v~~WTvn~~ 205 (226)
T cd08568 186 LLRLLRKLGLKIVLWTVNDP 205 (226)
T ss_pred HHHHHHHCCCEEEEEcCCCH
Confidence 99999999999999999976
No 92
>PLN02417 dihydrodipicolinate synthase
Probab=59.47 E-value=73 Score=27.14 Aligned_cols=86 Identities=7% Similarity=-0.153 Sum_probs=50.5
Q ss_pred CceeecchhccccCCchHHHHHHHHHhccCceee--eccCc---cccHHHH-------HhhCCC-CceEEEEEeecCHHH
Q psy13219 21 CPVGIAPSAMQKLAHADGEVATARAAGMMDAIMI--LSLMS---TTSLEEV-------RAQNPS-TTLWLQMYIFKDRAL 87 (193)
Q Consensus 21 ~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~--lst~s---s~s~eei-------~~~~~~-~~~wfQlY~~~dr~~ 87 (193)
.|-.+.|+--.+-.+.++=..+.+-..+.|+.-+ .+|.+ +.|.||- .+...+ -+...++- ..+-..
T Consensus 6 ~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~-~~~t~~ 84 (280)
T PLN02417 6 ITAIKTPYLPDGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTG-SNSTRE 84 (280)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECC-CccHHH
Confidence 3556778755555566665677776666675544 34433 3444432 222222 23333332 224566
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q psy13219 88 SLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 88 ~~~ll~RAe~AG~~AlvvTV 107 (193)
+.++.+.|+++|+.+++++-
T Consensus 85 ~i~~a~~a~~~Gadav~~~~ 104 (280)
T PLN02417 85 AIHATEQGFAVGMHAALHIN 104 (280)
T ss_pred HHHHHHHHHHcCCCEEEEcC
Confidence 77889999999999998864
No 93
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=59.12 E-value=40 Score=27.42 Aligned_cols=66 Identities=21% Similarity=0.241 Sum_probs=37.5
Q ss_pred HHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCH---HH----HHHHHHHHHHcCCcEEEEeeccCC
Q psy13219 40 VATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDR---AL----SLQMVQRAERSGYSAIVITMDTAV 111 (193)
Q Consensus 40 ~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr---~~----~~~ll~RAe~AG~~AlvvTVD~pv 111 (193)
..+|+++.+.|+..+.- .+-.-++++.+.. +-|.-..+| +|- .+ ..+.++.|.++|++ +|++|.+.
T Consensus 26 ~~~a~a~~~~G~~~~~~-~~~~~i~~i~~~~-~~Pil~~~~--~d~~~~~~~~~~~~~~v~~a~~aGad--~I~~d~~~ 98 (221)
T PRK01130 26 AAMALAAVQGGAVGIRA-NGVEDIKAIRAVV-DVPIIGIIK--RDYPDSEVYITPTLKEVDALAAAGAD--IIALDATL 98 (221)
T ss_pred HHHHHHHHHCCCeEEEc-CCHHHHHHHHHhC-CCCEEEEEe--cCCCCCCceECCCHHHHHHHHHcCCC--EEEEeCCC
Confidence 68999999999865443 2333444554433 233322233 110 01 23467899999999 55556654
No 94
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=58.99 E-value=22 Score=31.63 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=40.9
Q ss_pred CceEEEEEeecCHHH----HHHHHHHHHHc---CCcEEEEeeccCCCCCchhhh
Q psy13219 73 TTLWLQMYIFKDRAL----SLQMVQRAERS---GYSAIVITMDTAVLGSRYRDL 119 (193)
Q Consensus 73 ~~~wfQlY~~~dr~~----~~~ll~RAe~A---G~~AlvvTVD~pv~G~Re~d~ 119 (193)
+..|+-|-+-.|+.. ..+++++|+.. ||..+.++.|.|+..+|-.++
T Consensus 164 ~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~ 217 (326)
T PRK11840 164 GWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDA 217 (326)
T ss_pred CCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc
Confidence 467999999887753 56899999999 999999999999999998887
No 95
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=58.42 E-value=88 Score=24.51 Aligned_cols=83 Identities=18% Similarity=0.094 Sum_probs=57.7
Q ss_pred eeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhC-CCCce--EEEEEeecCHHHHHHHHHHHHHcC
Q psy13219 23 VGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQN-PSTTL--WLQMYIFKDRALSLQMVQRAERSG 99 (193)
Q Consensus 23 ~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~-~~~~~--wfQlY~~~dr~~~~~ll~RAe~AG 99 (193)
|+++++|..+ |--|-.-++++-+..|.-.+....-+++ ||++.++ ..... -.=.+--.-.++...+++..+++|
T Consensus 15 vlvak~GlDg--Hd~gakvia~~l~d~GfeVi~~g~~~tp-~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G 91 (143)
T COG2185 15 VLVAKLGLDG--HDRGAKVIARALADAGFEVINLGLFQTP-EEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAG 91 (143)
T ss_pred EEEeccCccc--cccchHHHHHHHHhCCceEEecCCcCCH-HHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhC
Confidence 7889998554 8778899999999999988876655444 6665443 21111 111122234577889999999999
Q ss_pred CcEEEEeec
Q psy13219 100 YSAIVITMD 108 (193)
Q Consensus 100 ~~AlvvTVD 108 (193)
...+.|-+=
T Consensus 92 ~~~i~v~~G 100 (143)
T COG2185 92 VEDILVVVG 100 (143)
T ss_pred CcceEEeec
Confidence 999985554
No 96
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=58.21 E-value=10 Score=32.63 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=23.1
Q ss_pred HHHHH-HHcCCcEEEEeeccCCCCCchhhh
Q psy13219 91 MVQRA-ERSGYSAIVITMDTAVLGSRYRDL 119 (193)
Q Consensus 91 ll~RA-e~AG~~AlvvTVD~pv~G~Re~d~ 119 (193)
|..-| +++|=+++.||||+|...+|+...
T Consensus 33 La~la~~~lG~~v~AvTv~sP~~p~~e~e~ 62 (269)
T COG1606 33 LAKLAKEALGDNVVAVTVDSPYIPRREIEE 62 (269)
T ss_pred HHHHHHHHhccceEEEEEecCCCChhhhhH
Confidence 33444 678999999999999999988553
No 97
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=58.00 E-value=52 Score=29.31 Aligned_cols=74 Identities=9% Similarity=0.110 Sum_probs=36.1
Q ss_pred chHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCH---------------HHHHHHHHHHHHcCC
Q psy13219 36 ADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDR---------------ALSLQMVQRAERSGY 100 (193)
Q Consensus 36 ~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr---------------~~~~~ll~RAe~AG~ 100 (193)
++.|....+...+.+...-+..+.....++|..+...+..++.+|.+-++ +...+.++.|++.|+
T Consensus 47 ~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~ 126 (363)
T TIGR02090 47 SEGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGL 126 (363)
T ss_pred ChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 44555555555444444444444444455554443334456666655321 223355566666666
Q ss_pred cEEEEeecc
Q psy13219 101 SAIVITMDT 109 (193)
Q Consensus 101 ~AlvvTVD~ 109 (193)
+.-+--.|+
T Consensus 127 ~v~~~~eda 135 (363)
T TIGR02090 127 IVEFSAEDA 135 (363)
T ss_pred EEEEEEeec
Confidence 543333354
No 98
>PRK12855 hypothetical protein; Provisional
Probab=57.70 E-value=13 Score=27.42 Aligned_cols=27 Identities=30% Similarity=0.257 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeeccCC
Q psy13219 85 RALSLQMVQRAERSGYSAIV-ITMDTAV 111 (193)
Q Consensus 85 r~~~~~ll~RAe~AG~~Alv-vTVD~pv 111 (193)
++..++|.++|++.|+.|++ +.+|+..
T Consensus 59 ~~A~~rm~~~A~~lGAnAVVgvr~d~~~ 86 (103)
T PRK12855 59 DIAMEEMKTLARQKNANAIVGIDVDYEV 86 (103)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhH
Confidence 35678999999999999975 5666543
No 99
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=57.36 E-value=29 Score=30.91 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=41.4
Q ss_pred hccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCC
Q psy13219 29 AMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGY 100 (193)
Q Consensus 29 g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~ 100 (193)
+++++. .+|=..+.++|.+.|++++..-+...+++.+.+.. -|+|+=-. .-.+..|++.+-+.|-
T Consensus 137 sf~G~g-~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~v----d~lqIgAr--~~~N~~LL~~va~~~k 201 (335)
T PRK08673 137 SFQGLG-EEGLKLLAEAREETGLPIVTEVMDPRDVELVAEYV----DILQIGAR--NMQNFDLLKEVGKTNK 201 (335)
T ss_pred cccccc-HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhC----CeEEECcc--cccCHHHHHHHHcCCC
Confidence 444442 34446788889999999999999989999887653 25666211 1122356655555444
No 100
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=57.16 E-value=31 Score=29.50 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=34.8
Q ss_pred cchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhh
Q psy13219 26 APSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQ 69 (193)
Q Consensus 26 aP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~ 69 (193)
||-+++++. .+|=..+.+.|.+.|++++.+-+...+++.+.+.
T Consensus 56 s~~sf~G~G-~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e~ 98 (250)
T PRK13397 56 SAASFQGLG-LQGIRYLHEVCQEFGLLSVSEIMSERQLEEAYDY 98 (250)
T ss_pred CCcccCCCC-HHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHhc
Confidence 567777774 3566889999999999999998888888888663
No 101
>PF01906 YbjQ_1: Putative heavy-metal-binding; InterPro: IPR002765 This family of bacterial proteins have not been characterised.; PDB: 3QKB_A 1VR4_D 1Y2I_D 2GTC_C.
Probab=56.94 E-value=14 Score=27.01 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeeccCCC
Q psy13219 85 RALSLQMVQRAERSGYSAIV-ITMDTAVL 112 (193)
Q Consensus 85 r~~~~~ll~RAe~AG~~Alv-vTVD~pv~ 112 (193)
++..++|.++|++.|+.|++ +.+|....
T Consensus 59 ~~A~~~L~~~A~~~GAnAVIgv~~~~~~~ 87 (105)
T PF01906_consen 59 EEALERLKEEAKELGANAVIGVRFDYSSI 87 (105)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhCCCCEEEEEEEEeeee
Confidence 46778999999999999975 55555433
No 102
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=56.93 E-value=27 Score=31.28 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=30.8
Q ss_pred ccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhh
Q psy13219 30 MQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQ 69 (193)
Q Consensus 30 ~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~ 69 (193)
++++. .+|-..+.+.|.+.|++++.+-+...+++.+.+.
T Consensus 163 f~g~~-~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~ 201 (360)
T PRK12595 163 FQGLG-VEGLKILKQVADEYGLAVISEIVNPADVEVALDY 201 (360)
T ss_pred ccCCC-HHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHh
Confidence 45543 2566788999999999999988888888888765
No 103
>PF01068 DNA_ligase_A_M: ATP dependent DNA ligase domain; InterPro: IPR012310 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This domain belongs to a more diverse superfamily, including catalytic domain of the mRNA capping enzyme (IPR001339 from INTERPRO) and NAD-dependent DNA ligase (IPR001679 from INTERPRO) []. ; GO: 0003910 DNA ligase (ATP) activity, 0005524 ATP binding, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3RR5_A 1X9N_A 2CFM_A 3QWU_B 3GDE_A 2Q2U_C 2Q2T_A 1FVI_A 1P8L_A 2VUG_A ....
Probab=56.83 E-value=47 Score=26.27 Aligned_cols=44 Identities=16% Similarity=0.337 Sum_probs=35.3
Q ss_pred CCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEE-eeccCCC-CCc
Q psy13219 72 STTLWLQMYIFKDRALSLQMVQRAERSGYSAIVI-TMDTAVL-GSR 115 (193)
Q Consensus 72 ~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~Alvv-TVD~pv~-G~R 115 (193)
......+.+...+.+...++.+++.+.|+..+|+ ..|++.- |+|
T Consensus 149 ~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EG~v~K~~~~~Y~~Gkr 194 (202)
T PF01068_consen 149 PRIRIVESYVVNSKEELEELFEEAIDQGFEGLVLKDPDSPYEPGKR 194 (202)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHHHTTSSEEEEEETTSSC-TTEE
T ss_pred CceeEeeeecCCCHHHHHHHHHHHHHcCCceEEEECCCCccCCCCc
Confidence 3455666677889999999999999999999999 6788765 555
No 104
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=56.39 E-value=80 Score=26.49 Aligned_cols=73 Identities=18% Similarity=0.090 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHH---------------HHHHHHHHHHHcCCc
Q psy13219 37 DGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRA---------------LSLQMVQRAERSGYS 101 (193)
Q Consensus 37 ~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~---------------~~~~ll~RAe~AG~~ 101 (193)
+.|....+...+.+....+..+.....++|..+...+..++.++.+.+.. ...+.++.|++.|+.
T Consensus 46 ~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~ 125 (259)
T cd07939 46 EEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLF 125 (259)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 34444556665544444444555556777765544567789999876543 345788899999986
Q ss_pred EEEEeecc
Q psy13219 102 AIVITMDT 109 (193)
Q Consensus 102 AlvvTVD~ 109 (193)
.-+-..|.
T Consensus 126 v~~~~~~~ 133 (259)
T cd07939 126 VSVGAEDA 133 (259)
T ss_pred EEEeeccC
Confidence 54444443
No 105
>PRK02877 hypothetical protein; Provisional
Probab=56.28 E-value=15 Score=27.34 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeeccCCCC
Q psy13219 85 RALSLQMVQRAERSGYSAIV-ITMDTAVLG 113 (193)
Q Consensus 85 r~~~~~ll~RAe~AG~~Alv-vTVD~pv~G 113 (193)
++..++|.++|++.|+.|++ +.+|....|
T Consensus 59 ~~A~~rm~~~A~~lGAnAVIgvr~d~~~i~ 88 (106)
T PRK02877 59 EIAFEELGEQARALGADAVVGIDIDYETVG 88 (106)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEehhcc
Confidence 35677899999999999976 567765543
No 106
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=56.24 E-value=16 Score=31.68 Aligned_cols=72 Identities=22% Similarity=0.360 Sum_probs=45.6
Q ss_pred CchHHHHHHHHHhccCceeeeccCc----cccHHHH-------HhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEE
Q psy13219 35 HADGEVATARAAGMMDAIMILSLMS----TTSLEEV-------RAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAI 103 (193)
Q Consensus 35 ~~~gE~~~araA~~~g~~~~lst~s----s~s~eei-------~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~Al 103 (193)
+.+-=.++.+||.+.+.|.++...- ..+++.+ ++.. ..|.+++| |.....+.+++|-++||+.+
T Consensus 26 n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~-~vPValHL----DH~~~~e~i~~ai~~GftSV 100 (287)
T PF01116_consen 26 NLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEA-SVPVALHL----DHGKDFEDIKRAIDAGFTSV 100 (287)
T ss_dssp SHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHS-TSEEEEEE----EEE-SHHHHHHHHHHTSSEE
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHc-CCCEEeec----ccCCCHHHHHHHHHhCcccc
Confidence 3344478999999999999996543 2233333 3333 46777777 55555788899999999997
Q ss_pred EEeeccCCCC
Q psy13219 104 VITMDTAVLG 113 (193)
Q Consensus 104 vvTVD~pv~G 113 (193)
++ |.....
T Consensus 101 M~--DgS~l~ 108 (287)
T PF01116_consen 101 MI--DGSALP 108 (287)
T ss_dssp EE--E-TTS-
T ss_pred cc--cCCcCC
Confidence 65 554443
No 107
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=56.14 E-value=95 Score=26.33 Aligned_cols=85 Identities=12% Similarity=0.049 Sum_probs=47.7
Q ss_pred ceeecchhccccCCchHHHHHHHHHhccCcee--eeccCc---cccHHHH-------HhhC-CCCceEEEEEeecCHHHH
Q psy13219 22 PVGIAPSAMQKLAHADGEVATARAAGMMDAIM--ILSLMS---TTSLEEV-------RAQN-PSTTLWLQMYIFKDRALS 88 (193)
Q Consensus 22 P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~--~lst~s---s~s~eei-------~~~~-~~~~~wfQlY~~~dr~~~ 88 (193)
|..+.|+--.+-.+.++=...++-..+.|+.- +.+|.+ +.|.+|= .+.. +..+...++- ..+-+.+
T Consensus 7 ~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~st~~~ 85 (289)
T PF00701_consen 7 PALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG-ANSTEEA 85 (289)
T ss_dssp EEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE-SSSHHHH
T ss_pred eeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc-chhHHHH
Confidence 55666765444445555567777777777643 334432 3343332 2222 3345555542 3366778
Q ss_pred HHHHHHHHHcCCcEEEEee
Q psy13219 89 LQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 89 ~~ll~RAe~AG~~AlvvTV 107 (193)
.++.+.|+++|+.+++++-
T Consensus 86 i~~a~~a~~~Gad~v~v~~ 104 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVIP 104 (289)
T ss_dssp HHHHHHHHHTT-SEEEEEE
T ss_pred HHHHHHHhhcCceEEEEec
Confidence 8999999999999999875
No 108
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=56.01 E-value=90 Score=26.83 Aligned_cols=86 Identities=13% Similarity=-0.006 Sum_probs=53.4
Q ss_pred CceeecchhccccCCchHHHHHHHHHhccCcee--eeccCc---cccHHHH-------HhhCC-CCceEEEEEeecCHHH
Q psy13219 21 CPVGIAPSAMQKLAHADGEVATARAAGMMDAIM--ILSLMS---TTSLEEV-------RAQNP-STTLWLQMYIFKDRAL 87 (193)
Q Consensus 21 ~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~--~lst~s---s~s~eei-------~~~~~-~~~~wfQlY~~~dr~~ 87 (193)
.|.++.|+--.+-.+.++=..+.+-..+.|+-- +.+|.+ +.|.||- .+... ..+.+.++-- .+-+.
T Consensus 5 ~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~-~~t~~ 83 (294)
T TIGR02313 5 IAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA-LNHDE 83 (294)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc-chHHH
Confidence 477788876555556666566777766777543 344443 4455443 22222 2344554432 34556
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q psy13219 88 SLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 88 ~~~ll~RAe~AG~~AlvvTV 107 (193)
+.++.+.|+++|+.++++.-
T Consensus 84 ai~~a~~A~~~Gad~v~v~p 103 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVIV 103 (294)
T ss_pred HHHHHHHHHHcCCCEEEEcC
Confidence 77899999999999999875
No 109
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=55.89 E-value=28 Score=30.63 Aligned_cols=70 Identities=10% Similarity=0.231 Sum_probs=45.2
Q ss_pred cCCchHHHHHHHHHhccCceeeeccCcc----ccHHH-------HHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCc
Q psy13219 33 LAHADGEVATARAAGMMDAIMILSLMST----TSLEE-------VRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYS 101 (193)
Q Consensus 33 l~~~~gE~~~araA~~~g~~~~lst~ss----~s~ee-------i~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~ 101 (193)
..+.+-=.++.+||.+.+.|.++..... ..++. +++.....| +.+.=|.....+.+++|-++||+
T Consensus 24 ~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VP----ValHLDHg~~~e~i~~ai~~Gft 99 (307)
T PRK05835 24 FVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIP----VALHLDHGTTFESCEKAVKAGFT 99 (307)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCe----EEEECCCCCCHHHHHHHHHcCCC
Confidence 3344555789999999999999975432 12232 222222133 33444777778889999999999
Q ss_pred EEEEe
Q psy13219 102 AIVIT 106 (193)
Q Consensus 102 AlvvT 106 (193)
-+++.
T Consensus 100 SVM~D 104 (307)
T PRK05835 100 SVMID 104 (307)
T ss_pred EEEEe
Confidence 97764
No 110
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=55.51 E-value=28 Score=30.12 Aligned_cols=73 Identities=26% Similarity=0.358 Sum_probs=47.3
Q ss_pred CCchHHHHHHHHHhccCceeeeccCc----cccHHHHH-------hhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcE
Q psy13219 34 AHADGEVATARAAGMMDAIMILSLMS----TTSLEEVR-------AQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSA 102 (193)
Q Consensus 34 ~~~~gE~~~araA~~~g~~~~lst~s----s~s~eei~-------~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~A 102 (193)
.+.+-=.++.+||.+.+.|.++...- -.+++.++ +.. ..|...+| |.....+.+.+|-++||+.
T Consensus 21 ~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~-~VPV~lHL----DH~~~~~~i~~ai~~GftS 95 (276)
T cd00947 21 NNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERA-SVPVALHL----DHGSSFELIKRAIRAGFSS 95 (276)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHC-CCCEEEEC----CCCCCHHHHHHHHHhCCCE
Confidence 34455578999999999999997542 13344332 222 34544444 6666667888999999999
Q ss_pred EEEeeccCCCC
Q psy13219 103 IVITMDTAVLG 113 (193)
Q Consensus 103 lvvTVD~pv~G 113 (193)
+++ |...+.
T Consensus 96 VMi--D~S~l~ 104 (276)
T cd00947 96 VMI--DGSHLP 104 (276)
T ss_pred EEe--CCCCCC
Confidence 776 444443
No 111
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=55.30 E-value=47 Score=29.47 Aligned_cols=84 Identities=17% Similarity=0.172 Sum_probs=54.3
Q ss_pred cchhccccCC--chHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEE
Q psy13219 26 APSAMQKLAH--ADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAI 103 (193)
Q Consensus 26 aP~g~~~l~~--~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~Al 103 (193)
.|++...+.| ..-+....-.+..+|++.+..++...+-+.|...-..+...+.... +.+..++++++|+.++
T Consensus 78 ~~v~~~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v~------~~~~A~~~~~~G~d~v 151 (336)
T COG2070 78 APVNVNILVARRNAAEAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKAAGIKVIHSVI------TVREALKAERAGADAV 151 (336)
T ss_pred ccchhheecccccchHHhhhhHHhcCCCCEEeccCCCCcHHHHHHHHHcCCeEEEEeC------CHHHHHHHHhCCCCEE
Confidence 4566666665 4455566666777799999999986666666544223455665553 4467788999999776
Q ss_pred EEeeccCCCCCch
Q psy13219 104 VITMDTAVLGSRY 116 (193)
Q Consensus 104 vvTVD~pv~G~Re 116 (193)
|. +=.-..|.+-
T Consensus 152 I~-~g~eAGGH~g 163 (336)
T COG2070 152 IA-QGAEAGGHRG 163 (336)
T ss_pred Ee-cCCcCCCcCC
Confidence 54 3333455554
No 112
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=55.23 E-value=24 Score=30.60 Aligned_cols=75 Identities=19% Similarity=0.185 Sum_probs=48.5
Q ss_pred CCchHHHHHHHHHhccCceeeeccCc----cccHHHHH-------hhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcE
Q psy13219 34 AHADGEVATARAAGMMDAIMILSLMS----TTSLEEVR-------AQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSA 102 (193)
Q Consensus 34 ~~~~gE~~~araA~~~g~~~~lst~s----s~s~eei~-------~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~A 102 (193)
.+.+-=.++.+||.+.+.|.++...- -..++.+. +.. ..|...+| |.....+.+.+|-++||+-
T Consensus 24 ~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~-~VPValHL----DHg~~~e~i~~ai~~GFtS 98 (282)
T TIGR01858 24 HNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTY-NMPLALHL----DHHESLDDIRQKVHAGVRS 98 (282)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHC-CCCEEEEC----CCCCCHHHHHHHHHcCCCE
Confidence 34455578999999999999996432 12344332 222 23444444 7777778899999999998
Q ss_pred EEEeeccCCCCCc
Q psy13219 103 IVITMDTAVLGSR 115 (193)
Q Consensus 103 lvvTVD~pv~G~R 115 (193)
+++ |...+...
T Consensus 99 VM~--DgS~lp~e 109 (282)
T TIGR01858 99 AMI--DGSHFPFA 109 (282)
T ss_pred Eee--cCCCCCHH
Confidence 765 55544443
No 113
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=54.75 E-value=53 Score=27.30 Aligned_cols=72 Identities=17% Similarity=0.154 Sum_probs=45.9
Q ss_pred HHHHHHHHhccCce--------eeeccCccccHHHHHhhCCCCceEEEEEee----------------------cCHHHH
Q psy13219 39 EVATARAAGMMDAI--------MILSLMSTTSLEEVRAQNPSTTLWLQMYIF----------------------KDRALS 88 (193)
Q Consensus 39 E~~~araA~~~g~~--------~~lst~ss~s~eei~~~~~~~~~wfQlY~~----------------------~dr~~~ 88 (193)
+..+++.-.+.|.. .+++|+...++.++.+..|.-+..+-+... ......
T Consensus 128 ~~~v~~~l~~~~~~~~~~~~~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (256)
T cd08601 128 EEKLLATLDKYGLLTDNLKNGQVIIQSFSKESLKKLHQLNPNIPLVQLLWYGEGAETYDKWLDEIKEYAIGIGPSIADAD 207 (256)
T ss_pred HHHHHHHHHHcCCCcccCCCCCEEEecCCHHHHHHHHHhCCCCcEEEEeccCcccccchhHHHHHHhcCeEeCCchhhcC
Confidence 44566666666643 688899988999998876643332221110 112234
Q ss_pred HHHHHHHHHcCCcEEEEeeccC
Q psy13219 89 LQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 89 ~~ll~RAe~AG~~AlvvTVD~p 110 (193)
.+++++++++|.+-.+-|||.+
T Consensus 208 ~~~v~~~~~~g~~v~~wTvn~~ 229 (256)
T cd08601 208 PWMVHLIHKKGLLVHPYTVNEK 229 (256)
T ss_pred HHHHHHHHHCCCEEEEEecCCH
Confidence 5778888888888888888763
No 114
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=54.29 E-value=42 Score=31.37 Aligned_cols=94 Identities=21% Similarity=0.303 Sum_probs=57.1
Q ss_pred CCCCCcceEC-CceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceE-----EE-
Q psy13219 6 CDRDSGLTVL-GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLW-----LQ- 78 (193)
Q Consensus 6 ~~~d~~t~~l-G~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~w-----fQ- 78 (193)
+++|++|.+- ...+..||+-|||.- -.|..+|.|-+++|=.-++. .+.++|+.++........ ..
T Consensus 35 ~~v~~~t~l~~~~~l~~Pii~a~M~~------vt~~~ma~a~a~~GglGvi~--~~~~~e~~~~~v~kvk~~e~g~i~dp 106 (495)
T PTZ00314 35 DDVDLSTRLTRNIRLKIPIVSSPMDT------VTEHKMAIAMALMGGIGVIH--NNCSIEEQVEEVRKVKRFENGFIMDP 106 (495)
T ss_pred ccccccccccCCcccCCceeecCccc------cccHHHHHHHHHCCCeEEec--CCCCHHHHHHHHhhccccccccccCC
Confidence 4567877765 347889999888642 24567788888887777774 367888876553110000 00
Q ss_pred EEeecCHHHHHHHHHHHHHcCCcEEEEeec
Q psy13219 79 MYIFKDRALSLQMVQRAERSGYSAIVITMD 108 (193)
Q Consensus 79 lY~~~dr~~~~~ll~RAe~AG~~AlvvTVD 108 (193)
+.+..| .-..+.++..++.++..+.|+-|
T Consensus 107 vtv~pd-~tv~eA~~lm~~~~~s~vpVvd~ 135 (495)
T PTZ00314 107 YVLSPN-HTVADVLEIKEKKGFSSILITVD 135 (495)
T ss_pred eecCCC-CCHHHHHHHHHHcCCcEEEEEeC
Confidence 112222 22334455556789999988654
No 115
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=54.05 E-value=26 Score=30.45 Aligned_cols=75 Identities=19% Similarity=0.225 Sum_probs=49.0
Q ss_pred CCchHHHHHHHHHhccCceeeeccCcc-----ccHHHHHhh-------CC-CCceEEEEEeecCHHHHHHHHHHHHHcCC
Q psy13219 34 AHADGEVATARAAGMMDAIMILSLMST-----TSLEEVRAQ-------NP-STTLWLQMYIFKDRALSLQMVQRAERSGY 100 (193)
Q Consensus 34 ~~~~gE~~~araA~~~g~~~~lst~ss-----~s~eei~~~-------~~-~~~~wfQlY~~~dr~~~~~ll~RAe~AG~ 100 (193)
.+.+-=.++.+||.+.+.|.++..... ..++.+... .+ ..|. .+.=|.....+.+++|-++||
T Consensus 26 ~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV----~lHLDHg~~~e~i~~ai~~Gf 101 (288)
T TIGR00167 26 NNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPV----ALHLDHGASEEDCAQAVKAGF 101 (288)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcE----EEECCCCCCHHHHHHHHHcCC
Confidence 344555789999999999999965331 245544322 21 2333 344477777889999999999
Q ss_pred cEEEEeeccCCCCC
Q psy13219 101 SAIVITMDTAVLGS 114 (193)
Q Consensus 101 ~AlvvTVD~pv~G~ 114 (193)
+.+++ |...+..
T Consensus 102 tSVMi--DgS~lp~ 113 (288)
T TIGR00167 102 SSVMI--DGSHEPF 113 (288)
T ss_pred CEEEe--cCCCCCH
Confidence 99765 5544443
No 116
>cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins. The mitochondrial DNA of parasitic protozoans is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-dependent ligases. They are involved in DNA replication or repair. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. They have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and the C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most me
Probab=53.56 E-value=70 Score=24.94 Aligned_cols=42 Identities=12% Similarity=0.062 Sum_probs=32.1
Q ss_pred ceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe-eccCCCCCc
Q psy13219 74 TLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT-MDTAVLGSR 115 (193)
Q Consensus 74 ~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT-VD~pv~G~R 115 (193)
..-.+.+.-.+.+...++++++.++|+..||+- -|++..+.|
T Consensus 123 ~~~~~~~~~~~~~~i~~~~~~~~~~g~EGlv~K~~ds~Y~~gR 165 (174)
T cd07896 123 IKIVPQIPVKSNEALDQYLDEVVAAGGEGLMLRRPDAPYETGR 165 (174)
T ss_pred EEEEeeeeeCCHHHHHHHHHHHHhcCCCeEEEecCCCcccCCc
Confidence 344555566788889999999999999999999 466654444
No 117
>PRK12856 hypothetical protein; Provisional
Probab=53.48 E-value=17 Score=26.83 Aligned_cols=27 Identities=30% Similarity=0.339 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeeccCC
Q psy13219 85 RALSLQMVQRAERSGYSAIV-ITMDTAV 111 (193)
Q Consensus 85 r~~~~~ll~RAe~AG~~Alv-vTVD~pv 111 (193)
++..++|.++|++.|+.|++ +.+|+..
T Consensus 59 ~~A~~rm~~~A~~lGAnAVvgvr~d~~~ 86 (103)
T PRK12856 59 DIAMDEMKELAKQKGANAIVGVDVDYEV 86 (103)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhH
Confidence 45677899999999999975 6666654
No 118
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=53.11 E-value=39 Score=26.64 Aligned_cols=84 Identities=18% Similarity=0.162 Sum_probs=46.2
Q ss_pred CCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCc-cccHHHHHhhCCCCceEEEEEeecCHHHHHHHHH
Q psy13219 15 LGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMS-TTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQ 93 (193)
Q Consensus 15 lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~s-s~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~ 93 (193)
+-+.++.|+.-=|++..-+ =.++.+|-...+-.-+++..+ ...++.+.+..+- =+..|...+.+..+..++
T Consensus 48 lr~~~~iPVV~I~~s~~Di-----l~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~---~i~~~~~~~~~e~~~~i~ 119 (176)
T PF06506_consen 48 LRKHVSIPVVEIPISGFDI-----LRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGV---DIKIYPYDSEEEIEAAIK 119 (176)
T ss_dssp HHCC-SS-EEEE---HHHH-----HHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT----EEEEEEESSHHHHHHHHH
T ss_pred HHHhCCCCEEEECCCHhHH-----HHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCC---ceEEEEECCHHHHHHHHH
Confidence 3445577777655543322 245555443332333333332 2346666665432 257788899999999999
Q ss_pred HHHHcCCcEEEEe
Q psy13219 94 RAERSGYSAIVIT 106 (193)
Q Consensus 94 RAe~AG~~AlvvT 106 (193)
++++.|++.++=.
T Consensus 120 ~~~~~G~~viVGg 132 (176)
T PF06506_consen 120 QAKAEGVDVIVGG 132 (176)
T ss_dssp HHHHTT--EEEES
T ss_pred HHHHcCCcEEECC
Confidence 9999999887643
No 119
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=52.90 E-value=62 Score=26.36 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=45.4
Q ss_pred HHHHHHHHhccCc--eeeeccCccccHHHHHhhCCCCceEEEEEe-------------------ecCHHHHHHHHHHHHH
Q psy13219 39 EVATARAAGMMDA--IMILSLMSTTSLEEVRAQNPSTTLWLQMYI-------------------FKDRALSLQMVQRAER 97 (193)
Q Consensus 39 E~~~araA~~~g~--~~~lst~ss~s~eei~~~~~~~~~wfQlY~-------------------~~dr~~~~~ll~RAe~ 97 (193)
+..+++...+.+. ..+++|+....++.+.+..|.-+..+ ++. ........++++++++
T Consensus 120 ~~~l~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~-l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~ 198 (230)
T cd08563 120 EKKVLELVKEYNLEDRVIFSSFNHESLKRLKKLDPKIKLAL-LYETGLQDPKDYAKKIGADSLHPDFKLLTEEVVEELKK 198 (230)
T ss_pred HHHHHHHHHHcCCCCCEEEEcCCHHHHHHHHHHCCCCcEEE-EecCcccCHHHHHHHhCCEEEccCchhcCHHHHHHHHH
Confidence 3456666666653 46777887778888877666433332 221 1112235678899999
Q ss_pred cCCcEEEEeeccC
Q psy13219 98 SGYSAIVITMDTA 110 (193)
Q Consensus 98 AG~~AlvvTVD~p 110 (193)
+|.+-.+-||+.+
T Consensus 199 ~g~~v~~Wtvn~~ 211 (230)
T cd08563 199 RGIPVRLWTVNEE 211 (230)
T ss_pred CCCEEEEEecCCH
Confidence 9999989998865
No 120
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=52.79 E-value=19 Score=28.85 Aligned_cols=28 Identities=25% Similarity=0.167 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeeccCCC
Q psy13219 85 RALSLQMVQRAERSGYSAIVITMDTAVL 112 (193)
Q Consensus 85 r~~~~~ll~RAe~AG~~AlvvTVD~pv~ 112 (193)
.+...+.+++|++.++++|+|.+|+|-.
T Consensus 15 ~~~l~~~l~~A~~~~~~~i~l~inSPGG 42 (172)
T cd07015 15 YDQFDRYITIAEQDNAEAIIIELDTPGG 42 (172)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEECCCC
Confidence 4567788999999999999999999954
No 121
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=52.25 E-value=1.1e+02 Score=26.54 Aligned_cols=86 Identities=14% Similarity=0.103 Sum_probs=54.7
Q ss_pred CceeecchhccccCCchHHHHHHHHHhccCcee--eeccCc---cccHHHHH-------hhCC-CCceEEEEEeecCHHH
Q psy13219 21 CPVGIAPSAMQKLAHADGEVATARAAGMMDAIM--ILSLMS---TTSLEEVR-------AQNP-STTLWLQMYIFKDRAL 87 (193)
Q Consensus 21 ~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~--~lst~s---s~s~eei~-------~~~~-~~~~wfQlY~~~dr~~ 87 (193)
.|.++.|+--.+-++.++=..+++-.-+.|+-- +.+|.+ +.|.||-. ++.. ..+...+.- ..+-+.
T Consensus 9 i~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g-~~~t~e 87 (299)
T COG0329 9 IPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVG-SNSTAE 87 (299)
T ss_pred eeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecC-CCcHHH
Confidence 577888987655567777777887777777543 334433 44555432 2222 223344443 234566
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q psy13219 88 SLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 88 ~~~ll~RAe~AG~~AlvvTV 107 (193)
+.++.+.|+++|+.++++.-
T Consensus 88 ai~lak~a~~~Gad~il~v~ 107 (299)
T COG0329 88 AIELAKHAEKLGADGILVVP 107 (299)
T ss_pred HHHHHHHHHhcCCCEEEEeC
Confidence 77899999999999998864
No 122
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=51.55 E-value=31 Score=29.25 Aligned_cols=59 Identities=12% Similarity=0.026 Sum_probs=39.6
Q ss_pred eeeeccCccccHHHHHhhCCCCceEEEEEe-----------------------------ecCHH--HHHHHHHHHHHcCC
Q psy13219 52 IMILSLMSTTSLEEVRAQNPSTTLWLQMYI-----------------------------FKDRA--LSLQMVQRAERSGY 100 (193)
Q Consensus 52 ~~~lst~ss~s~eei~~~~~~~~~wfQlY~-----------------------------~~dr~--~~~~ll~RAe~AG~ 100 (193)
..++||+...+++.+.+..|.-+..+-... +...- .+.+++++|+++|.
T Consensus 172 ~viisSF~~~~l~~l~~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~Gl 251 (282)
T cd08605 172 RIMFSSFDPDAAVLLRALQSLYPVMFLTDCGPYTHNDPRRNSIEAAIQVALEGGLQGIVSEVKVLLRNPTAVSLVKASGL 251 (282)
T ss_pred eEEEEeCCHHHHHHHHhcCccCCEEEEecCCCccccCchhhhHHHHHHHHHHcCCceEEecHHHhhcCcHHHHHHHHcCc
Confidence 578999999999988877665443332210 01111 25678888989999
Q ss_pred cEEEEee--ccC
Q psy13219 101 SAIVITM--DTA 110 (193)
Q Consensus 101 ~AlvvTV--D~p 110 (193)
+-.+.|| |.+
T Consensus 252 ~v~vWTv~~n~~ 263 (282)
T cd08605 252 ELGTYGKLNNDA 263 (282)
T ss_pred EEEEeCCCCCCH
Confidence 9888888 654
No 123
>PRK01119 hypothetical protein; Provisional
Probab=51.52 E-value=19 Score=26.67 Aligned_cols=29 Identities=34% Similarity=0.512 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeeccCCCC
Q psy13219 85 RALSLQMVQRAERSGYSAIV-ITMDTAVLG 113 (193)
Q Consensus 85 r~~~~~ll~RAe~AG~~Alv-vTVD~pv~G 113 (193)
++..++|.++|++.|+.|++ +.+|+-..|
T Consensus 59 ~~A~~rm~~~A~~lGAnAVIgvr~d~~~ig 88 (106)
T PRK01119 59 EEAIREMEQRAKDIGANAVIGVDIDYEVLG 88 (106)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEeeeec
Confidence 35678999999999999987 677765443
No 124
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=51.44 E-value=31 Score=29.95 Aligned_cols=74 Identities=16% Similarity=0.187 Sum_probs=47.6
Q ss_pred cCCchHHHHHHHHHhccCceeeeccCc----cccHHHH-------HhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCc
Q psy13219 33 LAHADGEVATARAAGMMDAIMILSLMS----TTSLEEV-------RAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYS 101 (193)
Q Consensus 33 l~~~~gE~~~araA~~~g~~~~lst~s----s~s~eei-------~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~ 101 (193)
..+.+-=.++.+||.+.+.|.++...- -..++.+ ++.. ..|.. +.=|.....+.+++|-++||+
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~-~VPV~----lHLDHg~~~e~i~~Ai~~Gft 99 (284)
T PRK09195 25 IHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQY-HHPLA----LHLDHHEKFDDIAQKVRSGVR 99 (284)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHC-CCCEE----EECCCCCCHHHHHHHHHcCCC
Confidence 334455578999999999999996432 1233433 2322 23433 344677677899999999999
Q ss_pred EEEEeeccCCCC
Q psy13219 102 AIVITMDTAVLG 113 (193)
Q Consensus 102 AlvvTVD~pv~G 113 (193)
-+++ |...+.
T Consensus 100 SVM~--DgS~l~ 109 (284)
T PRK09195 100 SVMI--DGSHLP 109 (284)
T ss_pred EEEe--CCCCCC
Confidence 8765 544443
No 125
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=51.31 E-value=1.6e+02 Score=25.37 Aligned_cols=24 Identities=21% Similarity=0.650 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHhcCCCCEEEec
Q psy13219 168 DDSVDWDDVRSLVQATKLPIVCKG 191 (193)
Q Consensus 168 ~~~~tW~di~wlr~~~~lPivlKG 191 (193)
.+.+++|-|+.+++..+.|+++=|
T Consensus 184 ~~~l~~e~L~~i~~~~~iPlv~hG 207 (282)
T TIGR01859 184 EPGLDFERLKEIKELTNIPLVLHG 207 (282)
T ss_pred CCccCHHHHHHHHHHhCCCEEEEC
Confidence 478999999999999999999877
No 126
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=51.27 E-value=43 Score=28.71 Aligned_cols=48 Identities=23% Similarity=0.289 Sum_probs=31.3
Q ss_pred chhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEE
Q psy13219 27 PSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQM 79 (193)
Q Consensus 27 P~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQl 79 (193)
|.+..++. .+|=..+.+.|.+.|++++..-+...+++.+.+.. -|+|+
T Consensus 69 ~~s~~G~g-~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~v----d~~kI 116 (266)
T PRK13398 69 PYSFQGLG-EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADYA----DMLQI 116 (266)
T ss_pred CCccCCcH-HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHhC----CEEEE
Confidence 33444442 34556778888888888888877777777776542 26665
No 127
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=51.08 E-value=1e+02 Score=26.28 Aligned_cols=86 Identities=16% Similarity=0.064 Sum_probs=55.6
Q ss_pred CceeecchhccccCCchHHHHHHHHHhc-cCce--eeeccCc---cccHHHHH-------hhCC-CCceEEEEEeecCHH
Q psy13219 21 CPVGIAPSAMQKLAHADGEVATARAAGM-MDAI--MILSLMS---TTSLEEVR-------AQNP-STTLWLQMYIFKDRA 86 (193)
Q Consensus 21 ~P~~iaP~g~~~l~~~~gE~~~araA~~-~g~~--~~lst~s---s~s~eei~-------~~~~-~~~~wfQlY~~~dr~ 86 (193)
+|.++.|+--.+-++.++=..+.+-..+ .|+- ++.+|.+ +.|.||-. +... ..+...++- ..+-+
T Consensus 8 ~~a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg-~~~t~ 86 (293)
T PRK04147 8 YAALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVG-SVNTA 86 (293)
T ss_pred eeeeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCC-CCCHH
Confidence 4677788766666677776777777777 7653 3445443 44554432 2223 234556553 23556
Q ss_pred HHHHHHHHHHHcCCcEEEEee
Q psy13219 87 LSLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 87 ~~~~ll~RAe~AG~~AlvvTV 107 (193)
.+.++.+.|+++|+.++++.-
T Consensus 87 ~ai~~a~~a~~~Gad~v~v~~ 107 (293)
T PRK04147 87 EAQELAKYATELGYDAISAVT 107 (293)
T ss_pred HHHHHHHHHHHcCCCEEEEeC
Confidence 778899999999999999883
No 128
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=50.95 E-value=71 Score=21.18 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=25.5
Q ss_pred ceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219 74 TLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 74 ~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT 106 (193)
...+=+-..+....+.++++.|++.|++.+.+|
T Consensus 49 d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 49 DVVIALSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 344444445556778889999999999999999
No 129
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=50.94 E-value=22 Score=28.52 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeeccCCC
Q psy13219 85 RALSLQMVQRAERSGYSAIVITMDTAVL 112 (193)
Q Consensus 85 r~~~~~ll~RAe~AG~~AlvvTVD~pv~ 112 (193)
.+...+.+++|++.++++|+|.+|+|-.
T Consensus 15 ~~~l~~~l~~a~~~~~~~ivl~inspGG 42 (178)
T cd07021 15 AAFVERALKEAKEEGADAVVLDIDTPGG 42 (178)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEEECcCC
Confidence 4556778899999999999999999954
No 130
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=50.42 E-value=32 Score=28.79 Aligned_cols=45 Identities=9% Similarity=0.097 Sum_probs=26.9
Q ss_pred HHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCC
Q psy13219 63 LEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLG 113 (193)
Q Consensus 63 ~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G 113 (193)
+|.+++..+- ...+.| |.+|++...++ -++||+|+++.||+.-++
T Consensus 103 ~e~vc~~~gl-~~~~PL-W~~d~~~l~e~----i~~Gf~aiIv~v~~~gL~ 147 (222)
T TIGR00289 103 IDKVCRELGL-KSIAPL-WHADPEKLMYE----VAEKFEVIIVSVSAMGLD 147 (222)
T ss_pred HHHHHHHcCC-EEeccc-cCCCHHHHHHH----HHcCCeEEEEEEccCCCC
Confidence 4566655431 122333 35666543333 379999999999987544
No 131
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=50.41 E-value=56 Score=29.65 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=47.3
Q ss_pred chHHHHHHHHHhccCceeeec---cCccccHHHHHhhCCCC---ceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219 36 ADGEVATARAAGMMDAIMILS---LMSTTSLEEVRAQNPST---TLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 36 ~~gE~~~araA~~~g~~~~ls---t~ss~s~eei~~~~~~~---~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT 106 (193)
-.|.-|+|+||..+|+-++-+ |=+|.=+|.+++..+++ -.|+|. .|+......+-=|-.+|.++...|
T Consensus 13 ~~GNeAiA~ga~~Ag~~~~a~YPITPsTeI~e~la~~~~~g~~~~~~vq~---E~E~~A~~~~~GAs~aGaRa~TaT 86 (407)
T PRK09622 13 WDGNTAASNALRQAQIDVVAAYPITPSTPIVQNYGSFKANGYVDGEFVMV---ESEHAAMSACVGAAAAGGRVATAT 86 (407)
T ss_pred cchHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhCCCcCcEEEee---ccHHHHHHHHHHHHhhCcCEEeec
Confidence 369999999999999887664 44555566666655433 245553 466666677777788899987554
No 132
>COG0393 Uncharacterized conserved protein [Function unknown]
Probab=50.27 E-value=20 Score=26.76 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCcEEE-EeeccCCCC
Q psy13219 86 ALSLQMVQRAERSGYSAIV-ITMDTAVLG 113 (193)
Q Consensus 86 ~~~~~ll~RAe~AG~~Alv-vTVD~pv~G 113 (193)
+.+++|.++||+.|+.|++ |-+|+..+|
T Consensus 60 ~Al~rm~~~A~~lGAnAVVgvr~d~~~ig 88 (108)
T COG0393 60 EALERMVDEAEALGANAVVGVRFDYSTIG 88 (108)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEechhHhC
Confidence 5678999999999999965 555654443
No 133
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=50.15 E-value=1.1e+02 Score=27.25 Aligned_cols=67 Identities=15% Similarity=0.025 Sum_probs=38.7
Q ss_pred hHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCH---------------HHHHHHHHHHHHcCCc
Q psy13219 37 DGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDR---------------ALSLQMVQRAERSGYS 101 (193)
Q Consensus 37 ~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr---------------~~~~~ll~RAe~AG~~ 101 (193)
+.|....+...+.+....+..++....++|..+...+..++.+|.+.+. +...+.++.|++.|.+
T Consensus 49 ~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~ 128 (365)
T TIGR02660 49 EEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLF 128 (365)
T ss_pred HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCE
Confidence 4555555555555443444555555666665554445567777776542 2334677777777866
Q ss_pred EE
Q psy13219 102 AI 103 (193)
Q Consensus 102 Al 103 (193)
.-
T Consensus 129 v~ 130 (365)
T TIGR02660 129 VS 130 (365)
T ss_pred EE
Confidence 33
No 134
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=49.50 E-value=40 Score=27.30 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=19.5
Q ss_pred HHHHHHHHcCCcEEEEeeccCCCC
Q psy13219 90 QMVQRAERSGYSAIVITMDTAVLG 113 (193)
Q Consensus 90 ~ll~RAe~AG~~AlvvTVD~pv~G 113 (193)
++++.-.+.||+++++.||+..++
T Consensus 128 ~ll~e~~~~g~~~~iv~v~~~~L~ 151 (194)
T cd01994 128 ELLREMIEAGFKAIIIKVAAEGLD 151 (194)
T ss_pred HHHHHHHHcCCeEEEEEeccCCCC
Confidence 466666799999999999987554
No 135
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=49.33 E-value=68 Score=27.89 Aligned_cols=24 Identities=17% Similarity=0.475 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHHhcCCCCEEEec
Q psy13219 168 DDSVDWDDVRSLVQATKLPIVCKG 191 (193)
Q Consensus 168 ~~~~tW~di~wlr~~~~lPivlKG 191 (193)
.|.++|+-|+.|++.++.|+||=|
T Consensus 187 ~p~L~~~~L~~I~~~~~iPLVLHG 210 (285)
T PRK07709 187 EPNLGFAEMEQVRDFTGVPLVLHG 210 (285)
T ss_pred CCccCHHHHHHHHHHHCCCEEEeC
Confidence 367899999999999999999977
No 136
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=48.99 E-value=48 Score=27.30 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=35.0
Q ss_pred eeeeccCccccHHHHHhhCCCCceEEEE-----------------EeecCHHHHHHHHHHHHHcCCcEEEEeeccC
Q psy13219 52 IMILSLMSTTSLEEVRAQNPSTTLWLQM-----------------YIFKDRALSLQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 52 ~~~lst~ss~s~eei~~~~~~~~~wfQl-----------------Y~~~dr~~~~~ll~RAe~AG~~AlvvTVD~p 110 (193)
..+++|++...++.+.+. +....-+-+ |+.-+.+.+ ..+++++++|.+..+.|||.+
T Consensus 137 ~~~i~SF~~~~l~~~r~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~G~~v~vWTVn~~ 210 (229)
T cd08581 137 QRVLISFDYDLLALAKQQ-GGPRTGWVLPDWDDASLAEADELQPDYLFCDKNLL-PDTGDLWAGTWKWVIYEVNEP 210 (229)
T ss_pred CeEEEeCCHHHHHHHHhc-CCCCeEEEeccCChHHHHHHHhhCCCEEecccccC-hhhHHHHhCCceEEEEEcCCH
Confidence 457888888888888776 432211111 111122222 346778888999999998876
No 137
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=48.99 E-value=1.5e+02 Score=25.32 Aligned_cols=86 Identities=17% Similarity=0.023 Sum_probs=49.0
Q ss_pred CceeecchhccccCCchHHHHHHHHHhcc-Ccee--eeccCc---cccHHHH-------HhhCCC-CceEEEEEeecCHH
Q psy13219 21 CPVGIAPSAMQKLAHADGEVATARAAGMM-DAIM--ILSLMS---TTSLEEV-------RAQNPS-TTLWLQMYIFKDRA 86 (193)
Q Consensus 21 ~P~~iaP~g~~~l~~~~gE~~~araA~~~-g~~~--~lst~s---s~s~eei-------~~~~~~-~~~wfQlY~~~dr~ 86 (193)
+|..+.|+--.+-++.++=..+.+-..+. |+.- +.+|.+ +.|.||= .+...+ .+...++- ..+-+
T Consensus 5 ~~a~~TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~-~~~~~ 83 (288)
T cd00954 5 IAALLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVG-SLNLK 83 (288)
T ss_pred eeceECCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccC-CCCHH
Confidence 35667776555545656555666666555 6443 334432 3344432 222222 23344442 23456
Q ss_pred HHHHHHHHHHHcCCcEEEEee
Q psy13219 87 LSLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 87 ~~~~ll~RAe~AG~~AlvvTV 107 (193)
.+.++.+.|+++|+.+++++-
T Consensus 84 ~ai~~a~~a~~~Gad~v~~~~ 104 (288)
T cd00954 84 ESQELAKHAEELGYDAISAIT 104 (288)
T ss_pred HHHHHHHHHHHcCCCEEEEeC
Confidence 677889999999999999763
No 138
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=48.79 E-value=1.2e+02 Score=26.04 Aligned_cols=32 Identities=6% Similarity=0.085 Sum_probs=22.6
Q ss_pred CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219 73 TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 73 ~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT 106 (193)
-|.|.= +..|-....+++++++++|+.+|+++
T Consensus 169 ~Pv~vK--l~~~~~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 169 IPVIAK--LTPNITDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred CCeEEE--CCCCchhHHHHHHHHHHcCCCEEEEe
Confidence 355543 34455567788999999999998764
No 139
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=48.59 E-value=94 Score=25.54 Aligned_cols=68 Identities=9% Similarity=-0.029 Sum_probs=41.4
Q ss_pred HHHHHHHhccC--cee-eeccCccccHHHHHhhCCCCceEEEEEeecC---------------HHHHHHHHHHHHHcCCc
Q psy13219 40 VATARAAGMMD--AIM-ILSLMSTTSLEEVRAQNPSTTLWLQMYIFKD---------------RALSLQMVQRAERSGYS 101 (193)
Q Consensus 40 ~~~araA~~~g--~~~-~lst~ss~s~eei~~~~~~~~~wfQlY~~~d---------------r~~~~~ll~RAe~AG~~ 101 (193)
....+.+.+.+ +.+ ++.... .+++..+...+..+++++...+ -+...+.++.|++.|++
T Consensus 54 ~~~i~~l~~~~~~~~~~~l~~~~---~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~ 130 (265)
T cd03174 54 WEVLRAIRKLVPNVKLQALVRNR---EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLE 130 (265)
T ss_pred HHHHHHHHhccCCcEEEEEccCc---hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 33444444444 555 444332 4455444334567888888765 35667888899999987
Q ss_pred EEEEeeccC
Q psy13219 102 AIVITMDTA 110 (193)
Q Consensus 102 AlvvTVD~p 110 (193)
..+-..|+-
T Consensus 131 v~~~~~~~~ 139 (265)
T cd03174 131 VEGSLEDAF 139 (265)
T ss_pred EEEEEEeec
Confidence 666655654
No 140
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=47.56 E-value=43 Score=21.70 Aligned_cols=32 Identities=16% Similarity=0.299 Sum_probs=23.4
Q ss_pred CceEEEEEeecCHHHHHHHHHHHHHcCCcEEE
Q psy13219 73 TTLWLQMYIFKDRALSLQMVQRAERSGYSAIV 104 (193)
Q Consensus 73 ~~~wfQlY~~~dr~~~~~ll~RAe~AG~~Alv 104 (193)
...++|+.-+++++..++++++.+..|+.+.+
T Consensus 3 ~~y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~ 34 (76)
T PF05036_consen 3 SGYYVQVGSFSSEENAERLLAKLKKKGPDAYV 34 (76)
T ss_dssp -EEEEEEEEES-HHHHHHHHHHHHHHT-----
T ss_pred CcEEEEEEEcCCHHHHHHHHHHHHhcCCCcce
Confidence 35789999999999999999999999998875
No 141
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=47.50 E-value=1.6e+02 Score=25.79 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=15.2
Q ss_pred CCCHHHHHHHHhcC-CCCEEEec
Q psy13219 170 SVDWDDVRSLVQAT-KLPIVCKG 191 (193)
Q Consensus 170 ~~tW~di~wlr~~~-~lPivlKG 191 (193)
...|+.+..+++.. +.||+.=|
T Consensus 180 ~~~~~~i~~vk~~~~~ipVi~NG 202 (318)
T TIGR00742 180 PLRYERVYQLKKDFPHLTIEING 202 (318)
T ss_pred chhHHHHHHHHHhCCCCcEEEEC
Confidence 35787777777765 67877544
No 142
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=47.42 E-value=44 Score=29.02 Aligned_cols=72 Identities=17% Similarity=0.211 Sum_probs=45.2
Q ss_pred CCchHHHHHHHHHhccCceeeeccCc----cccHHHH-------HhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcE
Q psy13219 34 AHADGEVATARAAGMMDAIMILSLMS----TTSLEEV-------RAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSA 102 (193)
Q Consensus 34 ~~~~gE~~~araA~~~g~~~~lst~s----s~s~eei-------~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~A 102 (193)
.+.+-=.++.+||.+.+.|.++...- -..++.+ ++.. ..|... .-|.....+.+.+|-++||+.
T Consensus 26 ~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~-~VPVal----HLDH~~~~e~i~~ai~~GftS 100 (284)
T PRK12737 26 HNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKY-NIPLAL----HLDHHEDLDDIKKKVRAGIRS 100 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHC-CCCEEE----ECCCCCCHHHHHHHHHcCCCe
Confidence 34444578899999999999986432 1233433 2222 234343 336666678899999999997
Q ss_pred EEEeeccCCC
Q psy13219 103 IVITMDTAVL 112 (193)
Q Consensus 103 lvvTVD~pv~ 112 (193)
+++ |...+
T Consensus 101 VMi--DgS~l 108 (284)
T PRK12737 101 VMI--DGSHL 108 (284)
T ss_pred EEe--cCCCC
Confidence 654 55444
No 143
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=47.34 E-value=48 Score=29.16 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=42.6
Q ss_pred eccCccccHHHHHhhCCCCceEEEEEeec----------------CHHHHHHHHHHHHHcCCcEEEEeeccCC-CCCc
Q psy13219 55 LSLMSTTSLEEVRAQNPSTTLWLQMYIFK----------------DRALSLQMVQRAERSGYSAIVITMDTAV-LGSR 115 (193)
Q Consensus 55 lst~ss~s~eei~~~~~~~~~wfQlY~~~----------------dr~~~~~ll~RAe~AG~~AlvvTVD~pv-~G~R 115 (193)
-|+.|+.|+.+|+++.....++.-+++++ +.+..+..++-+++.| |..++--|+|. .+||
T Consensus 115 ASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~ig-K~~vv~~D~pGFi~NR 191 (307)
T COG1250 115 ASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIG-KTPVVVKDVPGFIVNR 191 (307)
T ss_pred eeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcC-CCCEeecCCCceehHh
Confidence 36677899999998863323444444443 5677888888899999 77788788884 4555
No 144
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=47.27 E-value=42 Score=29.21 Aligned_cols=75 Identities=23% Similarity=0.253 Sum_probs=48.5
Q ss_pred CCchHHHHHHHHHhccCceeeeccCc----cccHHHH-------HhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcE
Q psy13219 34 AHADGEVATARAAGMMDAIMILSLMS----TTSLEEV-------RAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSA 102 (193)
Q Consensus 34 ~~~~gE~~~araA~~~g~~~~lst~s----s~s~eei-------~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~A 102 (193)
.+.+-=.++.+||.+.+.|.+|...- ...++.+ ++.. ..|..++| |.....+.+++|-++||+-
T Consensus 26 ~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~-~VPValHL----DHg~~~e~i~~ai~~GFtS 100 (286)
T PRK12738 26 HNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTY-NMPLALHL----DHHESLDDIRRKVHAGVRS 100 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHC-CCCEEEEC----CCCCCHHHHHHHHHcCCCe
Confidence 34455579999999999999996422 1234443 2222 23444444 7777788999999999998
Q ss_pred EEEeeccCCCCCc
Q psy13219 103 IVITMDTAVLGSR 115 (193)
Q Consensus 103 lvvTVD~pv~G~R 115 (193)
+++ |...+...
T Consensus 101 VM~--DgS~lp~e 111 (286)
T PRK12738 101 AMI--DGSHFPFA 111 (286)
T ss_pred Eee--cCCCCCHH
Confidence 765 55544433
No 145
>PRK00967 hypothetical protein; Provisional
Probab=47.16 E-value=25 Score=25.96 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeeccCCCC
Q psy13219 85 RALSLQMVQRAERSGYSAIV-ITMDTAVLG 113 (193)
Q Consensus 85 r~~~~~ll~RAe~AG~~Alv-vTVD~pv~G 113 (193)
++..++|.++|++.|+.||+ |.+|+...+
T Consensus 59 ~eA~~rm~~~A~~~GAnAIIgvr~d~~~~~ 88 (105)
T PRK00967 59 DIAIDRMKEEAKQKGANAIVGMRFDSSSIR 88 (105)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEeeeec
Confidence 45678999999999999987 788876553
No 146
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=47.05 E-value=1.6e+02 Score=25.79 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=22.7
Q ss_pred eECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccC
Q psy13219 13 TVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLM 58 (193)
Q Consensus 13 ~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ 58 (193)
++||. ..||+-+||+. ...| .+|.|..++|-.-+++..
T Consensus 6 ~~lgi--~~PIiqapM~~--is~~----~LaaAVs~aGglG~l~~~ 43 (330)
T PF03060_consen 6 ELLGI--KYPIIQAPMGG--ISTP----ELAAAVSNAGGLGFLGAG 43 (330)
T ss_dssp HHHT---SSSEEE---TT--TSSH----HHHHHHHHTTSBEEEECT
T ss_pred HHhCC--CcCEEcCCCCC--CChH----HHHHHHHhCCCEeecccc
Confidence 34554 47999999986 3332 567777778877778754
No 147
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=46.73 E-value=1.2e+02 Score=27.80 Aligned_cols=86 Identities=16% Similarity=0.109 Sum_probs=54.1
Q ss_pred ceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHH-------hhCC-CCceEEEEEee-
Q psy13219 12 LTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVR-------AQNP-STTLWLQMYIF- 82 (193)
Q Consensus 12 t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~-------~~~~-~~~~wfQlY~~- 82 (193)
+++||. ..|++-+||+ .+.. ...++.|..++|..-.+++.+ .+.|+|. +..+ +.+.-+-|...
T Consensus 7 ~~~lgi--ryPii~gpMa-~Gis----s~eLVaAvs~AGgLG~lgag~-l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~ 78 (418)
T cd04742 7 KEDYGL--RYAYVAGAMA-RGIA----SAELVVAMGKAGMLGFFGAGG-LPLDEVEQAIERIQAALGNGEPYGVNLIHSP 78 (418)
T ss_pred HHHhCC--CccEECCccc-CCCC----CHHHHHHHHhCCCeeeecCCC-CCHHHHHHHHHHHHHhccCCCCeEEeeecCC
Confidence 345554 5799999986 1232 346788888888887787654 4555553 3223 45655555443
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEE
Q psy13219 83 KDRALSLQMVQRAERSGYSAIVI 105 (193)
Q Consensus 83 ~dr~~~~~ll~RAe~AG~~Alvv 105 (193)
.+.+...++++-..+.|++.+..
T Consensus 79 ~~~~~e~~~v~l~le~gV~~ve~ 101 (418)
T cd04742 79 DEPELEEGLVDLFLRHGVRVVEA 101 (418)
T ss_pred CCchhHHHHHHHHHHcCCCEEEe
Confidence 34455567888888999976543
No 148
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=46.69 E-value=39 Score=28.28 Aligned_cols=69 Identities=12% Similarity=0.146 Sum_probs=38.4
Q ss_pred HHHHHHHhccCceeeec-cCcc----ccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCC
Q psy13219 40 VATARAAGMMDAIMILS-LMST----TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLG 113 (193)
Q Consensus 40 ~~~araA~~~g~~~~ls-t~ss----~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G 113 (193)
..+.++..+.|+-.+++ ...+ .-+|.+++..+- ...+.| |.+|++ +++++..++||+++++.||+..++
T Consensus 75 e~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~v~~~lgl-~~~~PL-W~~~~~---~ll~e~i~~G~~aiIv~v~a~gL~ 148 (223)
T TIGR00290 75 EELKGILHTLDVEAVVFGAIYSEYQKTRIERVCRELGL-KSFAPL-WHRDPE---KLMEEFVEEKFEARIIAVAAEGLD 148 (223)
T ss_pred HHHHHHHHHcCCCEEEECCcccHHHHHHHHHHHHhcCC-EEeccc-cCCCHH---HHHHHHHHcCCeEEEEEEecCCCC
Confidence 35555555556544432 2222 224566655431 122222 234443 477777799999999999987544
No 149
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=46.68 E-value=1.5e+02 Score=25.84 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=29.7
Q ss_pred cchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhh
Q psy13219 26 APSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQ 69 (193)
Q Consensus 26 aP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~ 69 (193)
||..+|++ ..+|=.-+.+++.+.|.+.+.=-+...-+|.+.+.
T Consensus 86 SPYsFQGl-ge~gL~~l~~a~~~~Gl~vvtEvm~~~~~e~~~~y 128 (286)
T COG2876 86 SPYSFQGL-GEEGLKLLKRAADETGLPVVTEVMDVRDVEAAAEY 128 (286)
T ss_pred Cccccccc-CHHHHHHHHHHHHHcCCeeEEEecCHHHHHHHHhh
Confidence 56667776 33455677788888888887777776677766654
No 150
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=46.64 E-value=38 Score=28.22 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=40.5
Q ss_pred eeeeccCccccHHHHHhhCCCCceEEEE------------------EeecCHHHHHHHHHHHHHcCCcEEEEeeccC
Q psy13219 52 IMILSLMSTTSLEEVRAQNPSTTLWLQM------------------YIFKDRALSLQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 52 ~~~lst~ss~s~eei~~~~~~~~~wfQl------------------Y~~~dr~~~~~ll~RAe~AG~~AlvvTVD~p 110 (193)
..+++|++...+..+.+..|.-+..+-+ |-......+.+++++++++|.+-.+-||+.+
T Consensus 144 ~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~WTvn~~ 220 (249)
T PRK09454 144 PPLLSSFSEDALEAARQAAPELPRGLLLDEWPDDWLELTRRLGCVSLHLNHKLLDEARVAALKAAGLRILVYTVNDP 220 (249)
T ss_pred CEEEEeCCHHHHHHHHHhCCCCcEEEEeccccccHHHHHHhcCCeEEecccccCCHHHHHHHHHCCCEEEEEeCCCH
Confidence 5678888888888888766543332211 1111223467899999999999999999875
No 151
>PRK11633 cell division protein DedD; Provisional
Probab=46.53 E-value=46 Score=28.00 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=34.5
Q ss_pred CCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccC
Q psy13219 72 STTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 72 ~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~p 110 (193)
++.+..||=-++|++..++|..+-+.+||+|-+..+++.
T Consensus 147 ~~~~vVQlgaf~n~~~A~~l~~kL~~~G~~Ay~~~~~~~ 185 (226)
T PRK11633 147 GKAYVVQLGALKNADKVNEIVAKLRLSGYRVYTVPSTPV 185 (226)
T ss_pred CCcEEEEecccCCHHHHHHHHHHHHHCCCeeEEEeeecC
Confidence 445789999999999999999999999999999887643
No 152
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=46.53 E-value=1.7e+02 Score=24.79 Aligned_cols=31 Identities=10% Similarity=0.259 Sum_probs=21.1
Q ss_pred CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEE
Q psy13219 73 TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVI 105 (193)
Q Consensus 73 ~~~wfQlY~~~dr~~~~~ll~RAe~AG~~Alvv 105 (193)
-+.+.-+ ..|.+...+++++++++|+.+|.+
T Consensus 155 ~Pv~vKl--~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 155 VPVIVKL--TPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred CCEEEEe--CCCchhHHHHHHHHHHcCCCEEEE
Confidence 4556554 334445778888888999888755
No 153
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=46.34 E-value=1.4e+02 Score=25.87 Aligned_cols=79 Identities=13% Similarity=0.122 Sum_probs=49.6
Q ss_pred ecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCH-------------HHHHHH
Q psy13219 25 IAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDR-------------ALSLQM 91 (193)
Q Consensus 25 iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr-------------~~~~~l 91 (193)
|.=+|+=-+.||+- ..+.+.+.+.|....+.|.++.--+++.+-.+.+...+++.+...+ +.+.+-
T Consensus 76 V~i~GGEPLL~pdl-~eiv~~~~~~g~~v~l~TNG~ll~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~ 154 (318)
T TIGR03470 76 VSIPGGEPLLHPEI-DEIVRGLVARKKFVYLCTNALLLEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEA 154 (318)
T ss_pred EEEeCccccccccH-HHHHHHHHHcCCeEEEecCceehHHHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHH
Confidence 44457777889885 5677777777877777777765434443322223445777765421 345567
Q ss_pred HHHHHHcCCcEEE
Q psy13219 92 VQRAERSGYSAIV 104 (193)
Q Consensus 92 l~RAe~AG~~Alv 104 (193)
|+.+.++|+..-+
T Consensus 155 I~~l~~~G~~v~v 167 (318)
T TIGR03470 155 IREAKARGFRVTT 167 (318)
T ss_pred HHHHHHCCCcEEE
Confidence 8888888986444
No 154
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=46.18 E-value=63 Score=26.49 Aligned_cols=23 Identities=26% Similarity=0.684 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHHhcCCCCEEEec
Q psy13219 169 DSVDWDDVRSLVQATKLPIVCKG 191 (193)
Q Consensus 169 ~~~tW~di~wlr~~~~lPivlKG 191 (193)
...+|+-++.+++.++.|+++=|
T Consensus 178 ~g~~~~~i~~i~~~~~iPvia~G 200 (241)
T PRK13585 178 EGVNTEPVKELVDSVDIPVIASG 200 (241)
T ss_pred CCCCHHHHHHHHHhCCCCEEEeC
Confidence 34689999999999999998765
No 155
>PRK01217 hypothetical protein; Provisional
Probab=46.03 E-value=26 Score=26.33 Aligned_cols=29 Identities=17% Similarity=0.368 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeeccCCCC
Q psy13219 85 RALSLQMVQRAERSGYSAIV-ITMDTAVLG 113 (193)
Q Consensus 85 r~~~~~ll~RAe~AG~~Alv-vTVD~pv~G 113 (193)
++...+|.++|++.|+.||+ |.+|+...|
T Consensus 66 ~eA~~rm~~~A~~lGAnAVVgvrfd~s~i~ 95 (114)
T PRK01217 66 NQALERMIDHAKELGANAVINVRFDSNEIS 95 (114)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEHHHhc
Confidence 35678899999999999975 667765443
No 156
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=45.86 E-value=68 Score=27.92 Aligned_cols=58 Identities=9% Similarity=0.122 Sum_probs=33.1
Q ss_pred HHHHHHHhccCceeeeccCccc--cHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219 40 VATARAAGMMDAIMILSLMSTT--SLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 40 ~~~araA~~~g~~~~lst~ss~--s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT 106 (193)
....+.+.+.|++++..++... -++++.+. +...|-++ . +.+..++|+++|+..|+++
T Consensus 77 ~~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~--g~~v~~~v---~----s~~~a~~a~~~GaD~Ivv~ 136 (307)
T TIGR03151 77 DELVDLVIEEKVPVVTTGAGNPGKYIPRLKEN--GVKVIPVV---A----SVALAKRMEKAGADAVIAE 136 (307)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHc--CCEEEEEc---C----CHHHHHHHHHcCCCEEEEE
Confidence 3455666677888776544322 23455443 22223222 1 2345688889999998874
No 157
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=45.78 E-value=50 Score=29.62 Aligned_cols=70 Identities=20% Similarity=0.269 Sum_probs=44.0
Q ss_pred cCCchHHHHHHHHHhccCceeeeccCcc----ccHHHH-------HhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCc
Q psy13219 33 LAHADGEVATARAAGMMDAIMILSLMST----TSLEEV-------RAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYS 101 (193)
Q Consensus 33 l~~~~gE~~~araA~~~g~~~~lst~ss----~s~eei-------~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~ 101 (193)
..+.+-=.++.+||.+.+.|.+|...-. ..++.+ ++..+..| +.+.=|.....+.+++|-++||+
T Consensus 25 ~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VP----VaLHLDHg~~~e~i~~Ai~~GFt 100 (347)
T PRK13399 25 VNNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIP----ICLHQDHGNSPATCQSAIRSGFT 100 (347)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCc----EEEECCCCCCHHHHHHHHhcCCC
Confidence 3344555788999999999999864321 233332 22221223 33444666677788999999998
Q ss_pred EEEEe
Q psy13219 102 AIVIT 106 (193)
Q Consensus 102 AlvvT 106 (193)
.+++.
T Consensus 101 SVMiD 105 (347)
T PRK13399 101 SVMMD 105 (347)
T ss_pred EEEEe
Confidence 87654
No 158
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=45.74 E-value=48 Score=28.79 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=47.1
Q ss_pred CchHHHHHHHHHhccCceeeeccCcc----ccHHHHH-------hhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEE
Q psy13219 35 HADGEVATARAAGMMDAIMILSLMST----TSLEEVR-------AQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAI 103 (193)
Q Consensus 35 ~~~gE~~~araA~~~g~~~~lst~ss----~s~eei~-------~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~Al 103 (193)
+.+-=.++.+||.+.+.|.++...-. ..++.++ +.. ..|... .-|.....+.+.+|-++||+.+
T Consensus 27 n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~-~VPVal----HLDH~~~~e~i~~ai~~GftSV 101 (284)
T PRK12857 27 NMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKA-SVPVAL----HLDHGTDFEQVMKCIRNGFTSV 101 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHC-CCCEEE----ECCCCCCHHHHHHHHHcCCCeE
Confidence 33444688999999999999864321 2344432 222 234444 3466667778999999999987
Q ss_pred EEeeccCCCCCc
Q psy13219 104 VITMDTAVLGSR 115 (193)
Q Consensus 104 vvTVD~pv~G~R 115 (193)
++ |...+...
T Consensus 102 M~--DgS~lp~e 111 (284)
T PRK12857 102 MI--DGSKLPLE 111 (284)
T ss_pred EE--eCCCCCHH
Confidence 65 55544443
No 159
>cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP
Probab=45.53 E-value=1.2e+02 Score=26.54 Aligned_cols=73 Identities=14% Similarity=0.143 Sum_probs=50.0
Q ss_pred HHHHHHHHHhccCc-----eeeeccCccccHHHHHh-hCC----CCceEEEEEeec------------------------
Q psy13219 38 GEVATARAAGMMDA-----IMILSLMSTTSLEEVRA-QNP----STTLWLQMYIFK------------------------ 83 (193)
Q Consensus 38 gE~~~araA~~~g~-----~~~lst~ss~s~eei~~-~~~----~~~~wfQlY~~~------------------------ 83 (193)
-+..+.+...+.|. ..+++|+...+++.+.+ ..| . ..-.+|+...
T Consensus 155 ~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~p~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (318)
T cd08600 155 IAAATLEVLKKYGYTSKNDKVYLQTFDPNELKRIKNELLPKMGMD-LKLVQLIAYTDWGETQEKDPGGWVNYDYDWMFTK 233 (318)
T ss_pred HHHHHHHHHHHcCCCCCCCeEEEEeCCHHHHHHHHHhhCccccCC-cceEEEeccCCCCcccccccCCccccchhhhcCH
Confidence 34567777777776 57899999999999986 444 3 2333444211
Q ss_pred ---------------CHH------------HHHHHHHHHHHcCCcEEEEeeccCC
Q psy13219 84 ---------------DRA------------LSLQMVQRAERSGYSAIVITMDTAV 111 (193)
Q Consensus 84 ---------------dr~------------~~~~ll~RAe~AG~~AlvvTVD~pv 111 (193)
+.. .+.++|++|.++|....+-||+.+.
T Consensus 234 ~~l~~~~~~a~~i~~~~~~l~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~~ 288 (318)
T cd08600 234 GGLKEIAKYADGVGPWYSMIIEEKSSKGNIVLTDLVKDAHEAGLEVHPYTVRKDA 288 (318)
T ss_pred HHHHHHHHhheeccCCHHHcccccCCCCccChHHHHHHHHHcCCEEEEEeccCCc
Confidence 011 0137899999999999999999774
No 160
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=45.51 E-value=65 Score=27.50 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=18.9
Q ss_pred cCHHHHHHHHHHHH---HcCCcEEEEee
Q psy13219 83 KDRALSLQMVQRAE---RSGYSAIVITM 107 (193)
Q Consensus 83 ~dr~~~~~ll~RAe---~AG~~AlvvTV 107 (193)
++.+..+++++||+ +||+.+|++-.
T Consensus 152 rt~~~a~~~i~ra~a~~~AGA~~i~lE~ 179 (254)
T cd06557 152 KTEEEAERLLEDALALEEAGAFALVLEC 179 (254)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 34555788888885 78999999843
No 161
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=45.41 E-value=21 Score=27.05 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCcEEEEeeccCCCC
Q psy13219 87 LSLQMVQRAERSGYSAIVITMDTAVLG 113 (193)
Q Consensus 87 ~~~~ll~RAe~AG~~AlvvTVD~pv~G 113 (193)
-.++++++|++.|++.|++|==-...|
T Consensus 17 ~~~e~v~~A~~~Gl~~i~iTDH~~~~~ 43 (175)
T PF02811_consen 17 SPEEYVEQAKEKGLDAIAITDHNNFAG 43 (175)
T ss_dssp SHHHHHHHHHHTTESEEEEEEETTTTT
T ss_pred CHHHHHHHHHHcCCCEEEEcCCccccc
Confidence 457899999999999999984433333
No 162
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=45.37 E-value=72 Score=28.38 Aligned_cols=70 Identities=17% Similarity=0.157 Sum_probs=49.1
Q ss_pred chHHHHHHHHHhccCceeeec---cCccccHHHHHhhCC-CCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeec
Q psy13219 36 ADGEVATARAAGMMDAIMILS---LMSTTSLEEVRAQNP-STTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMD 108 (193)
Q Consensus 36 ~~gE~~~araA~~~g~~~~ls---t~ss~s~eei~~~~~-~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD 108 (193)
-.|..|+|+||.++|+-++-+ |=||.=+|.+++..+ -+..|+| ..|........-=|-.+|.+++..|-|
T Consensus 7 ~~GNeAiA~ga~~ag~~~~a~YPiTPsTeI~e~la~~~~~~~~~~vq---~E~E~aA~~~a~GAs~aG~Ra~taTSg 80 (352)
T PRK07119 7 MKGNEAIAEAAIRAGCRCYFGYPITPQSEIPEYMSRRLPEVGGVFVQ---AESEVAAINMVYGAAATGKRVMTSSSS 80 (352)
T ss_pred ehHHHHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHhCCEEEe---eCcHHHHHHHHHHHHhhCCCEEeecCc
Confidence 379999999999999987664 445444565554332 1234666 456666667777788899999999933
No 163
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=45.35 E-value=51 Score=29.57 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=44.0
Q ss_pred CCchHHHHHHHHHhccCceeeeccCcc----ccHHHH-------HhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcE
Q psy13219 34 AHADGEVATARAAGMMDAIMILSLMST----TSLEEV-------RAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSA 102 (193)
Q Consensus 34 ~~~~gE~~~araA~~~g~~~~lst~ss----~s~eei-------~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~A 102 (193)
.+.+-=.++.+||.+.+.|.+|...-+ ..++.+ ++.....|. .+.=|.....+.+.+|-++||+.
T Consensus 24 ~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPV----alHLDHg~~~e~i~~Ai~~GFtS 99 (347)
T TIGR01521 24 NNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPV----VMHQDHGNSPATCQRAIQLGFTS 99 (347)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcE----EEECCCCCCHHHHHHHHHcCCCE
Confidence 344555789999999999999864322 223332 222211333 33446777778899999999998
Q ss_pred EEEe
Q psy13219 103 IVIT 106 (193)
Q Consensus 103 lvvT 106 (193)
+++.
T Consensus 100 VMiD 103 (347)
T TIGR01521 100 VMMD 103 (347)
T ss_pred Eeec
Confidence 7764
No 164
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=45.23 E-value=28 Score=27.44 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeecc
Q psy13219 85 RALSLQMVQRAERSGYSAIVITMDT 109 (193)
Q Consensus 85 r~~~~~ll~RAe~AG~~AlvvTVD~ 109 (193)
.-.+.+++++|.++|.+..+-|||.
T Consensus 135 ~~~~~~~v~~~~~~g~~v~~wtvn~ 159 (179)
T cd08555 135 LIKDTELIASANKLGLLSRIWTVND 159 (179)
T ss_pred hhcCHHHHHHHHHCCCEEEEEeeCC
Confidence 4457789999999999999999997
No 165
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=45.09 E-value=1.6e+02 Score=23.64 Aligned_cols=19 Identities=26% Similarity=0.807 Sum_probs=11.5
Q ss_pred CCHHHHHHHHhcCCCCEEE
Q psy13219 171 VDWDDVRSLVQATKLPIVC 189 (193)
Q Consensus 171 ~tW~di~wlr~~~~lPivl 189 (193)
.+|+.++.+|+..+.||+.
T Consensus 170 ~~~~~~~~i~~~~~ipvi~ 188 (231)
T cd02801 170 ADWDYIAEIKEAVSIPVIA 188 (231)
T ss_pred CCHHHHHHHHhCCCCeEEE
Confidence 3566666666666666655
No 166
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=45.07 E-value=56 Score=30.74 Aligned_cols=66 Identities=12% Similarity=0.054 Sum_probs=40.1
Q ss_pred HHHHHHHhccCceeeeccCccccHHHHHhhCC-CCceEEEEEeecC--HHHHHHHHHHHHHcCCcEEEEe
Q psy13219 40 VATARAAGMMDAIMILSLMSTTSLEEVRAQNP-STTLWLQMYIFKD--RALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 40 ~~~araA~~~g~~~~lst~ss~s~eei~~~~~-~~~~wfQlY~~~d--r~~~~~ll~RAe~AG~~AlvvT 106 (193)
..++++|-++|..++.|-... .++++..... .+....-+....+ -+...+.+++|+++|++.|++.
T Consensus 218 ~~v~eaAL~aGAdiINsVs~~-~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIlD 286 (499)
T TIGR00284 218 LDELYEALKAGASGVIMPDVE-NAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVAAD 286 (499)
T ss_pred HHHHHHHHHcCCCEEEECCcc-chhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEEEe
Confidence 367788888899988875443 4555533111 1122333332212 2777899999999999765543
No 167
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=45.02 E-value=1.7e+02 Score=23.76 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=35.7
Q ss_pred HHHHHhccCceeeeccCccccHHHHHhhCCCC--ceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccC
Q psy13219 42 TARAAGMMDAIMILSLMSTTSLEEVRAQNPST--TLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 42 ~araA~~~g~~~~lst~ss~s~eei~~~~~~~--~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~p 110 (193)
+.+.+...++|.+++- .-.++|++......+ ..-+=.+..+|.+...++ +++.|-+.+++.+|.-
T Consensus 64 i~~i~~~~~~pi~~gg-GI~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~---~~~~g~~~i~~sid~~ 130 (230)
T TIGR00007 64 IKKIVRETGVPVQVGG-GIRSLEDVEKLLDLGVDRVIIGTAAVENPDLVKEL---LKEYGPERIVVSLDAR 130 (230)
T ss_pred HHHHHHhcCCCEEEeC-CcCCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHH---HHHhCCCcEEEEEEEE
Confidence 3444555678888843 556777765532111 111222334555544444 4566767788888863
No 168
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=44.91 E-value=91 Score=28.25 Aligned_cols=67 Identities=16% Similarity=0.165 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhccCceeeec---cCccccHHHHHhhCCC---CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219 37 DGEVATARAAGMMDAIMILS---LMSTTSLEEVRAQNPS---TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 37 ~gE~~~araA~~~g~~~~ls---t~ss~s~eei~~~~~~---~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT 106 (193)
.|.-|+|.||..+|+-++.+ |=+|.=+|.+++..++ +..|.|. .|.--.....-=|-.+|++++.-|
T Consensus 7 ~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~G~~~~~~~~~---E~E~aA~~~aiGAs~aGaRa~TaT 79 (390)
T PRK08366 7 SGNYAAAYAALHARVQVVAAYPITPQTSIIEKIAEFIANGEADIQYVPV---ESEHSAMAACIGASAAGARAFTAT 79 (390)
T ss_pred eHHHHHHHHHHHhCCCEEEEECCCChhHHHHHHHHHhhCCCCCeEEEEe---CCHHHHHHHHHHHHhhCCCeEeee
Confidence 68999999999999887664 4455556666665442 2445554 466556666767777888886544
No 169
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=44.84 E-value=89 Score=25.21 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=45.1
Q ss_pred HHHHHHHhccCc--eeeeccCccccHHHHHhhCCCCceEEE--------------EEeecCHHHHHHHHHHHHHcCCcEE
Q psy13219 40 VATARAAGMMDA--IMILSLMSTTSLEEVRAQNPSTTLWLQ--------------MYIFKDRALSLQMVQRAERSGYSAI 103 (193)
Q Consensus 40 ~~~araA~~~g~--~~~lst~ss~s~eei~~~~~~~~~wfQ--------------lY~~~dr~~~~~ll~RAe~AG~~Al 103 (193)
..+++.-.+.|. ..+++|+....+..+.+..|.-+..|= .|-..-...+.+++++++++|.+..
T Consensus 115 ~~v~~~l~~~~~~~~v~v~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~v~ 194 (220)
T cd08579 115 EKFVKLYKQNLIENQHQVHSLDYRVIEKVKKLDPKIKTGYILPFNIGNLPKTNVDFYSIEYSTLNKEFIRQAHQNGKKVY 194 (220)
T ss_pred HHHHHHHHHcCCCcCeEEEeCCHHHHHHHHHHCCCCeEEEEEecccCcccccCceEEeeehhhcCHHHHHHHHHCCCEEE
Confidence 345555555543 457788888888888776553222111 1111123356689999999999999
Q ss_pred EEeeccC
Q psy13219 104 VITMDTA 110 (193)
Q Consensus 104 vvTVD~p 110 (193)
+-|||.+
T Consensus 195 ~wtvn~~ 201 (220)
T cd08579 195 VWTVNDP 201 (220)
T ss_pred EEcCCCH
Confidence 9999865
No 170
>PRK06361 hypothetical protein; Provisional
Probab=44.46 E-value=25 Score=28.43 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCcEEEEeeccCC
Q psy13219 87 LSLQMVQRAERSGYSAIVITMDTAV 111 (193)
Q Consensus 87 ~~~~ll~RAe~AG~~AlvvTVD~pv 111 (193)
..++++++|.+.|+++|++|==.+.
T Consensus 11 ~~~e~v~~A~~~Gl~~i~iTDH~~~ 35 (212)
T PRK06361 11 IPSELVRRARVLGYRAIAITDHADA 35 (212)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCCC
Confidence 4678999999999999999955543
No 171
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=44.14 E-value=1.2e+02 Score=23.37 Aligned_cols=68 Identities=15% Similarity=0.056 Sum_probs=32.7
Q ss_pred CchHHHHHHHHHhccCceeeeccCccccHHHHHhhCC-CCceE--EEEEeecCHHHHHHHHHHHHHcCCcEE
Q psy13219 35 HADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNP-STTLW--LQMYIFKDRALSLQMVQRAERSGYSAI 103 (193)
Q Consensus 35 ~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~-~~~~w--fQlY~~~dr~~~~~ll~RAe~AG~~Al 103 (193)
|--|-.-+++...++|.-.+ -.....|.|++.+++. ..+.. .=-+.-.......+++++.+++|.+..
T Consensus 14 HdiGk~iv~~~l~~~GfeVi-~LG~~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~ 84 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVV-NLGVLSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGI 84 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEE-ECCCCCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCC
Confidence 54455555666666665433 2233456666654431 11111 111123344556667777777776443
No 172
>PRK06801 hypothetical protein; Provisional
Probab=44.13 E-value=46 Score=28.92 Aligned_cols=74 Identities=24% Similarity=0.285 Sum_probs=42.3
Q ss_pred CchHHHHHHHHHhccCceeeeccCcc----ccHHHH-------HhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEE
Q psy13219 35 HADGEVATARAAGMMDAIMILSLMST----TSLEEV-------RAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAI 103 (193)
Q Consensus 35 ~~~gE~~~araA~~~g~~~~lst~ss----~s~eei-------~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~Al 103 (193)
+.+-=.++.+||.+.+.|.++....+ .+++.+ ++.. ..| +.+.-|.....+.+++|-++||+.+
T Consensus 27 n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~-~vp----V~lHlDH~~~~e~i~~Ai~~GftSV 101 (286)
T PRK06801 27 DSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARH-DIP----VVLNLDHGLHFEAVVRALRLGFSSV 101 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHC-CCC----EEEECCCCCCHHHHHHHHHhCCcEE
Confidence 33444677788888888887754321 233322 2222 223 3344466666677778878888777
Q ss_pred EEeeccCCCCCc
Q psy13219 104 VITMDTAVLGSR 115 (193)
Q Consensus 104 vvTVD~pv~G~R 115 (193)
.+ |......+
T Consensus 102 m~--D~S~l~~e 111 (286)
T PRK06801 102 MF--DGSTLEYE 111 (286)
T ss_pred EE--cCCCCCHH
Confidence 76 55444433
No 173
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=44.04 E-value=59 Score=27.22 Aligned_cols=71 Identities=13% Similarity=0.002 Sum_probs=41.5
Q ss_pred HHHHHHHHhccCce--eeeccCccccHHHHHhhCCCCceEE--------------EEEeecCHHHHHHHHHHHHHcCCcE
Q psy13219 39 EVATARAAGMMDAI--MILSLMSTTSLEEVRAQNPSTTLWL--------------QMYIFKDRALSLQMVQRAERSGYSA 102 (193)
Q Consensus 39 E~~~araA~~~g~~--~~lst~ss~s~eei~~~~~~~~~wf--------------QlY~~~dr~~~~~ll~RAe~AG~~A 102 (193)
+..+.+.-.+.|.. .++++..+. ++.+.+..|.-..++ +.+-+.....+.+++++++++|.+.
T Consensus 148 ~~~v~~~l~~~~~~~~~v~~s~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v 226 (252)
T cd08574 148 VNITLDTILASGIPQHQVFWLPDEY-RALVRKVAPGFQQVSGRKLPVESLRENGISRLNLEYSQLSAQEIREYSKANISV 226 (252)
T ss_pred HHHHHHHHHHcCCCcccEEEccHHH-HHHHHHHCCCCeEeeccccchHHHHhcCCeEEccCcccCCHHHHHHHHHCCCEE
Confidence 34566666666652 223232233 667766655422221 0111222334668999999999999
Q ss_pred EEEeeccC
Q psy13219 103 IVITMDTA 110 (193)
Q Consensus 103 lvvTVD~p 110 (193)
.+.|||.+
T Consensus 227 ~~WTVn~~ 234 (252)
T cd08574 227 NLYVVNEP 234 (252)
T ss_pred EEEccCCH
Confidence 99999976
No 174
>PRK10864 putative methyltransferase; Provisional
Probab=43.96 E-value=53 Score=29.40 Aligned_cols=58 Identities=10% Similarity=0.066 Sum_probs=40.9
Q ss_pred cCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219 49 MDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 49 ~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT 106 (193)
.|+...+......+++++.+..+....++=|.=..|+.-+-.+++-|++.|+++|+++
T Consensus 173 qGV~A~v~~~~~~~l~~~l~~~~~~~~vlvLd~I~DP~NlGaIiRTA~afGv~~Vil~ 230 (346)
T PRK10864 173 GGVCFLIKKRNGTDVQQWLAQAGAQDCVLALEDVGNPHNLGGIMRSCAHFGVKGVVVQ 230 (346)
T ss_pred CeEEEEEeCCCCCCHHHHhhccccCCeEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEC
Confidence 4666666655556777765433222345555556788888899999999999999996
No 175
>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=43.74 E-value=1.1e+02 Score=26.80 Aligned_cols=63 Identities=19% Similarity=0.264 Sum_probs=49.1
Q ss_pred HHHhccCceeeeccCccccHHHHHhhCCC----------CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219 44 RAAGMMDAIMILSLMSTTSLEEVRAQNPS----------TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 44 raA~~~g~~~~lst~ss~s~eei~~~~~~----------~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT 106 (193)
.+-.+.+-.|+.=..-...+++|.+..|+ ...|.+++..-++...-+++++.+++|+++|++.
T Consensus 211 gvi~a~~~~~i~~n~p~~~ld~v~~llpg~~~pTi~~l~~~~~vav~~vv~~~~~~~~~~~lk~~GA~~Ilv~ 283 (290)
T COG0040 211 GVIEARGSKYIMLNAPRERLDEVTALLPGMEGPTILPLADPGWVAVHAVVDESLVWETMEKLKALGASDILVL 283 (290)
T ss_pred HHHhhcceeEEEeeCCHHHHHHHHHhccCCCCCcccccCCCCeEEEEEEecchhHHHHHHHHHhcCcceeEEe
Confidence 34444566677766667778888765431 2569999999999999999999999999999874
No 176
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=43.29 E-value=1.8e+02 Score=26.09 Aligned_cols=91 Identities=15% Similarity=0.069 Sum_probs=50.6
Q ss_pred CCceeecchhcc-ccCCchHHHHHHHHHhccCceeee-----ccCccccHHHHHh-------hCC---CCceEEEEEeec
Q psy13219 20 RCPVGIAPSAMQ-KLAHADGEVATARAAGMMDAIMIL-----SLMSTTSLEEVRA-------QNP---STTLWLQMYIFK 83 (193)
Q Consensus 20 ~~P~~iaP~g~~-~l~~~~gE~~~araA~~~g~~~~l-----st~ss~s~eei~~-------~~~---~~~~wfQlY~~~ 83 (193)
.-|++.+|+--. ++ .++.=..+++.....|+-.+. +.+...+.||=.+ ... +....+-.-+..
T Consensus 129 ~rPli~Ti~kp~~gl-d~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~ 207 (367)
T cd08205 129 DRPLLGTIIKPSIGL-SPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITG 207 (367)
T ss_pred CCCeeeeeeCCCCCC-CHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCC
Confidence 567777776432 33 444445666666777865553 2333444443211 111 233344333445
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeeccCCCC
Q psy13219 84 DRALSLQMVQRAERSGYSAIVITMDTAVLG 113 (193)
Q Consensus 84 dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G 113 (193)
+.+.+.++.++|+++|+.+++|..- ..|
T Consensus 208 ~~~e~i~~a~~a~~~Gad~vmv~~~--~~g 235 (367)
T cd08205 208 DPDELRRRADRAVEAGANALLINPN--LVG 235 (367)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc--ccc
Confidence 5566777777888899998776654 555
No 177
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=43.01 E-value=32 Score=29.34 Aligned_cols=33 Identities=15% Similarity=0.065 Sum_probs=28.7
Q ss_pred eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCC
Q psy13219 81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLG 113 (193)
Q Consensus 81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G 113 (193)
++.+|+...+++++..++|+++|++.+.-...+
T Consensus 59 ~Pw~R~~~A~ll~~L~~~ga~~I~~Di~f~~~~ 91 (310)
T PF05226_consen 59 WPWPRSVYARLLDRLAAAGAKAIGFDILFDEPD 91 (310)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEEeeecCCC
Confidence 567899999999999999999999999775553
No 178
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=42.62 E-value=1.7e+02 Score=23.62 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=33.3
Q ss_pred HHhccCceeeeccCccccHHHHHhhCCCCc--eEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccC
Q psy13219 45 AAGMMDAIMILSLMSTTSLEEVRAQNPSTT--LWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 45 aA~~~g~~~~lst~ss~s~eei~~~~~~~~--~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~p 110 (193)
.+...++|.+++ ..-.++|++......+. ..+=-....+++..++++++. -+.+++.+|..
T Consensus 69 i~~~~~~pv~~~-GGI~~~ed~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~----~~~i~vsid~k 131 (233)
T PRK00748 69 IVKAVDIPVQVG-GGIRSLETVEALLDAGVSRVIIGTAAVKNPELVKEACKKF----PGKIVVGLDAR 131 (233)
T ss_pred HHHHCCCCEEEc-CCcCCHHHHHHHHHcCCCEEEECchHHhCHHHHHHHHHHh----CCCceeeeecc
Confidence 334467888774 45578888755422111 112122234666666665543 23488899974
No 179
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=42.52 E-value=31 Score=28.86 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=29.6
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCch
Q psy13219 83 KDRALSLQMVQRAERSGYSAIVITMDTAVLGSRY 116 (193)
Q Consensus 83 ~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re 116 (193)
-.++++.+|++.|+++|+++|++-.-.|-.|-|+
T Consensus 60 lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~ 93 (217)
T PF02593_consen 60 LHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRR 93 (217)
T ss_pred cCchhHHHHHHHHHHcCCCEEEEecCCCccchHH
Confidence 3578999999999999999999999998866664
No 180
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=42.14 E-value=76 Score=27.32 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=20.8
Q ss_pred ecCHHHHHHHHHHHH---HcCCcEEEEeec
Q psy13219 82 FKDRALSLQMVQRAE---RSGYSAIVITMD 108 (193)
Q Consensus 82 ~~dr~~~~~ll~RAe---~AG~~AlvvTVD 108 (193)
-++.+..+++++||+ +||+.+||+-.=
T Consensus 153 grt~~~a~~~i~~A~a~e~AGA~~ivlE~v 182 (263)
T TIGR00222 153 GKDEEAAKKLLEDALALEEAGAQLLVLECV 182 (263)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 356666788999885 789999998643
No 181
>PRK03732 hypothetical protein; Provisional
Probab=41.99 E-value=33 Score=25.81 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHcCCcEEE-EeeccC
Q psy13219 85 RALSLQMVQRAERSGYSAIV-ITMDTA 110 (193)
Q Consensus 85 r~~~~~ll~RAe~AG~~Alv-vTVD~p 110 (193)
++...+|.++|++.|+.||+ |.+|+.
T Consensus 66 ~~A~~rm~~~A~~lGAnAVVgvr~d~s 92 (114)
T PRK03732 66 EEALRRMALHAKELGANAVVNFRFATS 92 (114)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEeh
Confidence 45677899999999999986 444443
No 182
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=41.79 E-value=37 Score=28.93 Aligned_cols=72 Identities=14% Similarity=0.057 Sum_probs=47.5
Q ss_pred HHHHHHHHhccCc--eeeeccCccccHHHHHhhCCC----------Cce----------------EE-------------
Q psy13219 39 EVATARAAGMMDA--IMILSLMSTTSLEEVRAQNPS----------TTL----------------WL------------- 77 (193)
Q Consensus 39 E~~~araA~~~g~--~~~lst~ss~s~eei~~~~~~----------~~~----------------wf------------- 77 (193)
+..+++.-.+.|. ..+++|+...+++++.+..|+ +.. ++
T Consensus 122 ~~~v~~~i~~~~~~~~v~v~SF~~~~l~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (263)
T cd08580 122 AKAVARVLERENAWSRVRIYSTNADYQDALAPYPQARLFESRDVTRTRLANVAMAHQCDLPPDSGAWAGFELRRKVTVVE 201 (263)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCHHHHHHHHhcCcccccccHHHHHHHHHhhhcccccccCccchhhccccccccchhee
Confidence 4556677666665 567889988888888766552 000 00
Q ss_pred ------EEEeecCHHHHHHHHHHHHHc-CCcEEEEeeccC
Q psy13219 78 ------QMYIFKDRALSLQMVQRAERS-GYSAIVITMDTA 110 (193)
Q Consensus 78 ------QlY~~~dr~~~~~ll~RAe~A-G~~AlvvTVD~p 110 (193)
+.+.+.-.-.+.+++++|.++ |.+..+.|||.+
T Consensus 202 ~~~~~~~~~~~~~~l~t~~~V~~~h~~~gl~V~~WTVN~~ 241 (263)
T cd08580 202 TFTLGEGRSPVQATLWTPAAVDCFRRNSKVKIVLFGINTA 241 (263)
T ss_pred eecccccccccccccCCHHHHHHHHhcCCcEEEEEEeCCH
Confidence 111111123457899999999 999999999876
No 183
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=41.61 E-value=78 Score=29.37 Aligned_cols=93 Identities=16% Similarity=0.096 Sum_probs=48.3
Q ss_pred CCCCCcceEC-CceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhC------CCCceEEE
Q psy13219 6 CDRDSGLTVL-GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQN------PSTTLWLQ 78 (193)
Q Consensus 6 ~~~d~~t~~l-G~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~------~~~~~wfQ 78 (193)
+++|++|.+- +..+..||+-|||... .+.|++.+- +..-|+. ++. .+.+.|+..+.. .+ ...-.
T Consensus 26 ~~~~~~t~l~~~~~~~~Piv~a~m~~v----T~~ela~av-a~~GglG-~i~--~~~~~e~~~~~I~~vk~~~d-im~~~ 96 (486)
T PRK05567 26 NDVDLSTQLTKNIRLNIPLLSAAMDTV----TEARMAIAM-AREGGIG-VIH--KNMSIEEQAEEVRKVKRSES-GVVTD 96 (486)
T ss_pred ccccccchhhhhcCcCcCEEeCCCCCc----CHHHHHHHH-HhCCCCC-Eec--CCCCHHHHHHHHHHhhhhhh-cccCC
Confidence 4567777764 4567799999998743 356655554 3333333 343 234555543221 11 11112
Q ss_pred EEeecCHHHHHHHHHHHHHcCCcEEEEee
Q psy13219 79 MYIFKDRALSLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 79 lY~~~dr~~~~~ll~RAe~AG~~AlvvTV 107 (193)
.+......-..+.++...+.++..+.|+=
T Consensus 97 ~v~i~~~~tv~ea~~~m~~~~~~~lpVvd 125 (486)
T PRK05567 97 PVTVTPDTTLAEALALMARYGISGVPVVD 125 (486)
T ss_pred CeEeCCCCCHHHHHHHHHHhCCCEEEEEc
Confidence 22222223344555666777888877753
No 184
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.36 E-value=1.2e+02 Score=25.44 Aligned_cols=56 Identities=20% Similarity=0.146 Sum_probs=33.9
Q ss_pred CchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCC
Q psy13219 35 HADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGS 114 (193)
Q Consensus 35 ~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~ 114 (193)
|-|||+ .|+-.+++|+..+-+|.. .++ ...+.++++.-+ .|+ .+++|.|.|....
T Consensus 77 s~DGEl-iA~~l~kfG~~~IRGSs~-----------Kgg-----------~~Alr~l~k~Lk-~G~-~i~itpDgPkGp~ 131 (214)
T COG2121 77 SRDGEL-IARLLEKFGLRVIRGSSN-----------KGG-----------ISALRALLKALK-QGK-SIAITPDGPKGPV 131 (214)
T ss_pred CcCHHH-HHHHHHHcCceEEeccCC-----------cch-----------HHHHHHHHHHHh-CCC-cEEEcCCCCCCCc
Confidence 557886 467788888888887751 011 123444444433 365 6788888876544
Q ss_pred c
Q psy13219 115 R 115 (193)
Q Consensus 115 R 115 (193)
+
T Consensus 132 ~ 132 (214)
T COG2121 132 H 132 (214)
T ss_pred e
Confidence 4
No 185
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=41.31 E-value=32 Score=29.13 Aligned_cols=27 Identities=37% Similarity=0.359 Sum_probs=24.1
Q ss_pred ecCHHHHHHHHHHHHHcCCcEEEEeec
Q psy13219 82 FKDRALSLQMVQRAERSGYSAIVITMD 108 (193)
Q Consensus 82 ~~dr~~~~~ll~RAe~AG~~AlvvTVD 108 (193)
+++.+.+.+|++.|.++|.+.+|.|=-
T Consensus 16 p~s~eesl~ml~~A~~qGvt~iVaTsH 42 (254)
T COG4464 16 PKSLEESLAMLREAVRQGVTKIVATSH 42 (254)
T ss_pred CCcHHHHHHHHHHHHHcCceEEeeccc
Confidence 467899999999999999999999854
No 186
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=40.79 E-value=77 Score=26.97 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=39.9
Q ss_pred HHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCC
Q psy13219 38 GEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGY 100 (193)
Q Consensus 38 gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~ 100 (193)
|=..+.+.|.+.|++++.+-+...+++.+.+.. -|+|+=- -.-....|++.+.+.|-
T Consensus 77 gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~~----d~lkI~s--~~~~n~~LL~~~a~~gk 133 (260)
T TIGR01361 77 GLKLLRRAADEHGLPVVTEVMDPRDVEIVAEYA----DILQIGA--RNMQNFELLKEVGKQGK 133 (260)
T ss_pred HHHHHHHHHHHhCCCEEEeeCChhhHHHHHhhC----CEEEECc--ccccCHHHHHHHhcCCC
Confidence 335788889999999999999999999887653 2566621 11123458877776665
No 187
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=40.05 E-value=54 Score=29.25 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=19.6
Q ss_pred cCHHHHHHHHHHHH---HcCCcEEEEee
Q psy13219 83 KDRALSLQMVQRAE---RSGYSAIVITM 107 (193)
Q Consensus 83 ~dr~~~~~ll~RAe---~AG~~AlvvTV 107 (193)
++.+..++++++|+ +||+.+||+-.
T Consensus 176 r~~~~a~~li~dA~ale~AGAf~ivLE~ 203 (332)
T PLN02424 176 RTAESAVKVVETALALQEAGCFAVVLEC 203 (332)
T ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEcC
Confidence 45566778888885 79999999854
No 188
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=39.97 E-value=1.2e+02 Score=26.33 Aligned_cols=88 Identities=18% Similarity=0.130 Sum_probs=54.1
Q ss_pred ceeCCceeecchhccccC----CchHHH--HHHHHHhccCceeeeccC--ccccHHHHHhhCCCCceEEEEE-eecCHHH
Q psy13219 17 TRYRCPVGIAPSAMQKLA----HADGEV--ATARAAGMMDAIMILSLM--STTSLEEVRAQNPSTTLWLQMY-IFKDRAL 87 (193)
Q Consensus 17 ~~~~~P~~iaP~g~~~l~----~~~gE~--~~araA~~~g~~~~lst~--ss~s~eei~~~~~~~~~wfQlY-~~~dr~~ 87 (193)
+++-+|+++=+.....-+ |-+.|. ..+|.|++.|.=++=-.+ +..+.+++.+.++ .+.-.-== .-.+...
T Consensus 140 ~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~e~F~~vv~~~~-vpVviaGG~k~~~~~~ 218 (265)
T COG1830 140 HELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDPESFRRVVAACG-VPVVIAGGPKTETERE 218 (265)
T ss_pred HHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCChHHHHHHHHhCC-CCEEEeCCCCCCChHH
Confidence 567888887565544333 555553 567888888876655433 3478888887765 22110000 0114456
Q ss_pred HHHHHHHHHHcCCcEEEE
Q psy13219 88 SLQMVQRAERSGYSAIVI 105 (193)
Q Consensus 88 ~~~ll~RAe~AG~~Alvv 105 (193)
..++++.|-++|+..+++
T Consensus 219 ~l~~~~~ai~aGa~G~~~ 236 (265)
T COG1830 219 FLEMVTAAIEAGAMGVAV 236 (265)
T ss_pred HHHHHHHHHHccCcchhh
Confidence 677888888889887654
No 189
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=39.22 E-value=71 Score=28.66 Aligned_cols=68 Identities=21% Similarity=0.268 Sum_probs=42.9
Q ss_pred CchHHHHHHHHHhccCceeeeccCcc----ccHHHHH-------hhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEE
Q psy13219 35 HADGEVATARAAGMMDAIMILSLMST----TSLEEVR-------AQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAI 103 (193)
Q Consensus 35 ~~~gE~~~araA~~~g~~~~lst~ss----~s~eei~-------~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~Al 103 (193)
+.+-=.++.+||.+.+.|.++...-. ..++.+. +..+..| +.+.=|.....+.+++|-++||+.+
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VP----ValHLDHg~~~e~i~~ai~~GftSV 102 (347)
T PRK09196 27 NLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIP----VVMHQDHGNSPATCQRAIQLGFTSV 102 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCc----EEEECCCCCCHHHHHHHHHcCCCEE
Confidence 44444788999999999999864321 2233321 1111123 3344466667778999999999987
Q ss_pred EEe
Q psy13219 104 VIT 106 (193)
Q Consensus 104 vvT 106 (193)
++.
T Consensus 103 MiD 105 (347)
T PRK09196 103 MMD 105 (347)
T ss_pred Eec
Confidence 654
No 190
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=38.62 E-value=26 Score=32.85 Aligned_cols=94 Identities=15% Similarity=0.073 Sum_probs=49.9
Q ss_pred CCCCCcceEC-CceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhC------CCCceEEE
Q psy13219 6 CDRDSGLTVL-GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQN------PSTTLWLQ 78 (193)
Q Consensus 6 ~~~d~~t~~l-G~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~------~~~~~wfQ 78 (193)
+++|++|.+- ...+..||+-|||.... |-.+|.|-+++|-.-++.. +.+.|+..+.. ..+..-=-
T Consensus 39 ~~~~~~t~lt~~~~~~~Pivsa~M~~vt------~~~lA~Ama~aGGiGfI~~--~as~E~q~~~Irkvk~~~~gmi~dp 110 (505)
T PLN02274 39 DAVDLSTRLSRNIPLSIPCVSSPMDTVT------ESDMAIAMAALGGIGIVHY--NNTAEEQAAIVRKAKSRRVGFVSDP 110 (505)
T ss_pred cccccccccccccCcCCCEeccCCcccc------hHHHHHHHHhCCCeEEEcC--CCCHHHHHHHHHHhhcccccccCCC
Confidence 4567765553 24566899999985332 4556666666665445553 34565554321 11100000
Q ss_pred EEeecCHHHHHHHHHHHHHcCCcEEEEeec
Q psy13219 79 MYIFKDRALSLQMVQRAERSGYSAIVITMD 108 (193)
Q Consensus 79 lY~~~dr~~~~~ll~RAe~AG~~AlvvTVD 108 (193)
+.+..|.. ..+.++...+.+++.++|+-|
T Consensus 111 vtV~pd~t-V~dA~~lm~~~~~~~lpVvD~ 139 (505)
T PLN02274 111 VVKSPSST-ISSLDELKASRGFSSVCVTET 139 (505)
T ss_pred eeeCCCCc-HHHHHHHHHhcCCceEEEEeC
Confidence 12333333 333455557788999888643
No 191
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=38.56 E-value=1.2e+02 Score=27.71 Aligned_cols=35 Identities=26% Similarity=0.176 Sum_probs=26.1
Q ss_pred eecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCc
Q psy13219 81 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSR 115 (193)
Q Consensus 81 ~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~R 115 (193)
-+.|-+..++|.+...++|++-||+..=+..+|.-
T Consensus 151 sp~Dln~lk~Ln~~l~~~Gv~dIVlDpgt~~lGyG 185 (386)
T PF03599_consen 151 SPIDLNLLKQLNIKLTELGVKDIVLDPGTRALGYG 185 (386)
T ss_dssp -SSCHHHHHHHHHHHHTTT-GGEEEE---SSTTTT
T ss_pred ecccHHHHHHHHHHHHhcCcccEEecCCcccchhH
Confidence 34699999999999999999999998877776654
No 192
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=38.55 E-value=85 Score=26.97 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHhcCCCCEEE
Q psy13219 170 SVDWDDVRSLVQATKLPIVC 189 (193)
Q Consensus 170 ~~tW~di~wlr~~~~lPivl 189 (193)
.-+|+.+++|++.++.||..
T Consensus 214 ~~d~~~~~~L~~~~~ipIa~ 233 (316)
T cd03319 214 AGDDDGLAYLRDKSPLPIMA 233 (316)
T ss_pred CCCHHHHHHHHhcCCCCEEE
Confidence 35789999999999999875
No 193
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=38.41 E-value=1.8e+02 Score=28.45 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=46.4
Q ss_pred HHHHHHhccCceeeeccC------------------ccccHHHHHhhC-----CCCceEEEE---Eee-cCH----HHHH
Q psy13219 41 ATARAAGMMDAIMILSLM------------------STTSLEEVRAQN-----PSTTLWLQM---YIF-KDR----ALSL 89 (193)
Q Consensus 41 ~~araA~~~g~~~~lst~------------------ss~s~eei~~~~-----~~~~~wfQl---Y~~-~dr----~~~~ 89 (193)
.+.+.++++|..+.+++. .+.++++++... ++..+.+++ |++ .|+ +...
T Consensus 258 ~~~~iakeaGY~~afT~~~G~~~~~~~~~LpRi~I~~~~sl~~f~~~v~~~~~~~~~r~~h~dld~vyd~dp~qq~~~L~ 337 (671)
T PRK14582 258 IALEELKKLGYDMAFTLESGLANASQLDSIPRVLIANNPSLKEFAQQIITVQEKSPQRVMHIDLDYVYDENPQQQDRNID 337 (671)
T ss_pred HHHHHHHHCCCeEEEEeCCCCCCCCCcCccceEEecCCCCHHHHHHHHhcccCCCCEEEEEeccccccCCCHHHHHHHHH
Confidence 456667777877766631 245666665332 334578888 554 454 4556
Q ss_pred HHHHHHHHcCCcEEEEee
Q psy13219 90 QMVQRAERSGYSAIVITM 107 (193)
Q Consensus 90 ~ll~RAe~AG~~AlvvTV 107 (193)
.+|+|.++.|..++++-+
T Consensus 338 ~lLdrlk~~G~ntV~lqa 355 (671)
T PRK14582 338 VLIQRVKDMQISTVYLQA 355 (671)
T ss_pred HHHHHHHHcCCCEEEEEe
Confidence 899999999999999999
No 194
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=38.27 E-value=30 Score=27.62 Aligned_cols=32 Identities=9% Similarity=0.187 Sum_probs=23.2
Q ss_pred EeecCHHHHHHHHHHHHHcCCcEEEEeeccCC
Q psy13219 80 YIFKDRALSLQMVQRAERSGYSAIVITMDTAV 111 (193)
Q Consensus 80 Y~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv 111 (193)
..+.+.+...+++++++++||+..++-|.++.
T Consensus 100 ~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~ 131 (199)
T PF06414_consen 100 GTLSNPSKLRKLIREAKAAGYKVELYYVAVPP 131 (199)
T ss_dssp --TTSSHHHHHHHHHHHCTT-EEEEEEE---H
T ss_pred cCCCChhHHHHHHHHHHcCCceEEEEEEECCH
Confidence 35678888888999999999999999999863
No 195
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=37.92 E-value=38 Score=27.89 Aligned_cols=24 Identities=13% Similarity=0.342 Sum_probs=20.3
Q ss_pred HHHHHHHHcCCcEEEEeeccCCCC
Q psy13219 90 QMVQRAERSGYSAIVITMDTAVLG 113 (193)
Q Consensus 90 ~ll~RAe~AG~~AlvvTVD~pv~G 113 (193)
++++.+.+.||+++++.||+..++
T Consensus 126 el~~~~~~~G~~~~i~~v~~~~l~ 149 (218)
T TIGR03679 126 EYLRELVERGFRFIIVSVSAYGLD 149 (218)
T ss_pred HHHHHHHHCCCEEEEEEEecCCCC
Confidence 588888899999999999986544
No 196
>cd01097 Tetrahydromethanopterin_reductase N5,N10-methylenetetrahydromethanopterin reductase (Mer) catalyzes the reduction of N5,N10-methylenetetrahydromethanopterin with reduced coenzyme F420 to N5-methyltetrahydromethanopterin and oxidized coenzyme F420.
Probab=37.77 E-value=18 Score=28.85 Aligned_cols=29 Identities=14% Similarity=0.328 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeeccCCC
Q psy13219 84 DRALSLQMVQRAERSGYSAIVITMDTAVL 112 (193)
Q Consensus 84 dr~~~~~ll~RAe~AG~~AlvvTVD~pv~ 112 (193)
+.....++.++||++||.++++.+|.-..
T Consensus 13 ~~~~~~~~a~~ae~~Gf~~~w~~lD~lS~ 41 (202)
T cd01097 13 GPRELVELARAAEEAGFDSVWVSLDALSG 41 (202)
T ss_pred CHHHHHHHHHHHHHcCCchhHHhHHHhCC
Confidence 57788889999999999999999997643
No 197
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=37.28 E-value=1.1e+02 Score=26.21 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=19.6
Q ss_pred ecCHHHHHHHHHHHH---HcCCcEEEEe
Q psy13219 82 FKDRALSLQMVQRAE---RSGYSAIVIT 106 (193)
Q Consensus 82 ~~dr~~~~~ll~RAe---~AG~~AlvvT 106 (193)
-++.+...++++||+ +||+.+|++-
T Consensus 154 grt~~~a~~~i~ra~a~~eAGA~~i~lE 181 (264)
T PRK00311 154 GRDEEAAEKLLEDAKALEEAGAFALVLE 181 (264)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 345566788898886 7999999985
No 198
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=37.19 E-value=1.4e+02 Score=22.80 Aligned_cols=25 Identities=20% Similarity=0.069 Sum_probs=12.9
Q ss_pred HHHHHHhccCc-eeeeccCccccHHH
Q psy13219 41 ATARAAGMMDA-IMILSLMSTTSLEE 65 (193)
Q Consensus 41 ~~araA~~~g~-~~~lst~ss~s~ee 65 (193)
..+++|.+.+. ..++|+..+++++.
T Consensus 41 ~~v~aa~~~~adiVglS~L~t~~~~~ 66 (128)
T cd02072 41 EFIDAAIETDADAILVSSLYGHGEID 66 (128)
T ss_pred HHHHHHHHcCCCEEEEeccccCCHHH
Confidence 34555555554 34456665555443
No 199
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=37.17 E-value=1.3e+02 Score=25.34 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=40.0
Q ss_pred HHH-HHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCC
Q psy13219 40 VAT-ARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGS 114 (193)
Q Consensus 40 ~~~-araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~ 114 (193)
.++ +..+.+.++|++..+.++..+.+. ...+.+|+.. +.|......+.+-+++.|.+.+.+-.+--..|.
T Consensus 81 ~a~~~~~~~~~~vp~i~~~~~~~~l~~~----~~~~~~fr~~-~~~~~~~~~l~~~~~~~~~~~vail~~~~~~g~ 151 (312)
T cd06346 81 IAALTSVAVPNGVVMISPSSTSPTLTTL----DDNGLFFRTA-PSDALQGQALAQLAAERGYKSVATTYINNDYGV 151 (312)
T ss_pred HhhhhhhhccCCcEEEecCCCCccceec----CCCceEEEec-CCcHHHHHHHHHHHHHcCCCeEEEEEccCchhh
Confidence 455 667777888887655444333321 2234677764 345656666777777777766655433333443
No 200
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=36.89 E-value=1.1e+02 Score=26.48 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHcCCcEEEEe
Q psy13219 87 LSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 87 ~~~~ll~RAe~AG~~AlvvT 106 (193)
...+++++++++|+.+|.|+
T Consensus 148 ~~~~~a~~l~~~G~d~i~vh 167 (319)
T TIGR00737 148 NAVEAARIAEDAGAQAVTLH 167 (319)
T ss_pred hHHHHHHHHHHhCCCEEEEE
Confidence 34567777777777777664
No 201
>KOG1541|consensus
Probab=36.87 E-value=41 Score=28.77 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=28.9
Q ss_pred CCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCC
Q psy13219 72 STTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGS 114 (193)
Q Consensus 72 ~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~ 114 (193)
++..-||+|+ ++.+-.+.+++.|.+|||.. .|-||-|..-+
T Consensus 153 g~raV~QfYp-en~~q~d~i~~~a~~aGF~G-GlvVd~Pes~k 193 (270)
T KOG1541|consen 153 GARAVLQFYP-ENEAQIDMIMQQAMKAGFGG-GLVVDWPESTK 193 (270)
T ss_pred CceeEEEecc-cchHHHHHHHHHHHhhccCC-ceeeecccccc
Confidence 3455799995 55566777889999999865 45578775433
No 202
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=36.69 E-value=77 Score=24.88 Aligned_cols=33 Identities=24% Similarity=0.511 Sum_probs=24.9
Q ss_pred EEEeecCH---HHHHHHHHHHHHcCCcEEEEeeccC
Q psy13219 78 QMYIFKDR---ALSLQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 78 QlY~~~dr---~~~~~ll~RAe~AG~~AlvvTVD~p 110 (193)
++|...+. +.+-.|++++-..|.+.+|.|.|-.
T Consensus 5 ~FY~l~~~~~~~~~c~L~~k~~~~G~rvlI~~~d~~ 40 (144)
T COG2927 5 TFYLLSESTLLAAACRLAEKAWRSGWRVLIQCEDEA 40 (144)
T ss_pred EEEEecchhHHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 34554433 2556899999999999999999964
No 203
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=36.63 E-value=1.4e+02 Score=25.64 Aligned_cols=67 Identities=7% Similarity=-0.059 Sum_probs=42.9
Q ss_pred HHHHHHhccCc--eeeeccCccccHHHHHhhCCCCceEEEEEeec------CH---------------------------
Q psy13219 41 ATARAAGMMDA--IMILSLMSTTSLEEVRAQNPSTTLWLQMYIFK------DR--------------------------- 85 (193)
Q Consensus 41 ~~araA~~~g~--~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~------dr--------------------------- 85 (193)
.+.+...+.+. ..+++|+...++..+.+..|.-+.+|.+.... |.
T Consensus 168 ~vl~~i~~~~~~~~vv~~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (293)
T cd08572 168 TILAVVFEHAGGRRIIFSSFDPDICIMLRLKQNKYPVLFLTNGGTNEVEHMDPRRRSLQAAVNFALAEGLLGVVLHAEDL 247 (293)
T ss_pred HHHHHHHHhCCCCcEEEECCCHHHHHHHHhhCccCCEEEEecCCCCcccccchhhhhHHHHHHHHHHCCCeEEEechHHh
Confidence 45555555543 46889999899999988777656655442111 00
Q ss_pred HHHHHHHHHHHHcCCcEEEEee
Q psy13219 86 ALSLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 86 ~~~~~ll~RAe~AG~~AlvvTV 107 (193)
..+.+++++|+++|..-.+-||
T Consensus 248 ~~~~~~v~~~~~~Gl~v~~wTv 269 (293)
T cd08572 248 LKNPSLISLVKALGLVLFTYGD 269 (293)
T ss_pred hcCcHHHHHHHHcCcEEEEECC
Confidence 0135777777777877777777
No 204
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=36.62 E-value=1.1e+02 Score=25.38 Aligned_cols=38 Identities=5% Similarity=-0.053 Sum_probs=29.3
Q ss_pred CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCC
Q psy13219 73 TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVL 112 (193)
Q Consensus 73 ~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~ 112 (193)
.+.-.|++ -.|.+...+..+++++. +..|=+.+-.|..
T Consensus 73 ~p~~vqi~-g~~~~~~~~aa~~~~~~-~~~ielN~gCP~~ 110 (233)
T cd02911 73 VLVGVNVR-SSSLEPLLNAAALVAKN-AAILEINAHCRQP 110 (233)
T ss_pred CeEEEEec-CCCHHHHHHHHHHHhhc-CCEEEEECCCCcH
Confidence 46789997 56778888888888774 5888888888765
No 205
>PRK08185 hypothetical protein; Provisional
Probab=36.29 E-value=72 Score=27.71 Aligned_cols=24 Identities=17% Similarity=0.440 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHhcCCCCEEEec
Q psy13219 168 DDSVDWDDVRSLVQATKLPIVCKG 191 (193)
Q Consensus 168 ~~~~tW~di~wlr~~~~lPivlKG 191 (193)
.|.++|+-|+.|++..+.|||+=|
T Consensus 182 kp~L~~e~l~~I~~~~~iPLVlHG 205 (283)
T PRK08185 182 KPELQMDLLKEINERVDIPLVLHG 205 (283)
T ss_pred CCCcCHHHHHHHHHhhCCCEEEEC
Confidence 478999999999999999999977
No 206
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=36.06 E-value=1.3e+02 Score=24.78 Aligned_cols=70 Identities=16% Similarity=0.141 Sum_probs=40.2
Q ss_pred HHHHHHhccCc--eeeeccCccccHHHHHhhCCCCceEEEE-------------------EeecCHHHHHHHHHHHHHcC
Q psy13219 41 ATARAAGMMDA--IMILSLMSTTSLEEVRAQNPSTTLWLQM-------------------YIFKDRALSLQMVQRAERSG 99 (193)
Q Consensus 41 ~~araA~~~g~--~~~lst~ss~s~eei~~~~~~~~~wfQl-------------------Y~~~dr~~~~~ll~RAe~AG 99 (193)
.+++.-.+.|. ..+++|+....+..+.+..|.-+.++-. +.........+++++++++|
T Consensus 152 ~v~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G 231 (263)
T cd08567 152 AVLAVIRKAGLEDRVVLQSFDWRTLQEVRRLAPDIPTVALTEETTLGNLPRAAKKLGADIWSPYFTLVTKELVDEAHALG 231 (263)
T ss_pred HHHHHHHHcCCCCceEEEeCCHHHHHHHHHHCCCccEEEEecCCcccCHHHHHHHhCCcEEecchhhcCHHHHHHHHHCC
Confidence 44544444443 4567777766777776665543222211 11111223457888888888
Q ss_pred CcEEEEeeccC
Q psy13219 100 YSAIVITMDTA 110 (193)
Q Consensus 100 ~~AlvvTVD~p 110 (193)
.+-.+-|||.+
T Consensus 232 ~~v~vwtvn~~ 242 (263)
T cd08567 232 LKVVPWTVNDP 242 (263)
T ss_pred CEEEEecCCCH
Confidence 88888888653
No 207
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=36.03 E-value=1.5e+02 Score=25.18 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=34.7
Q ss_pred CCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhh
Q psy13219 72 STTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRD 118 (193)
Q Consensus 72 ~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d 118 (193)
.+...+=+-+.+....+.+.++.|++.|++.|.+|=-....--+..|
T Consensus 177 ~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad 223 (281)
T COG1737 177 PGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLAD 223 (281)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhc
Confidence 34567777778888888899999999999999999654333333333
No 208
>COG3147 DedD Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.79 E-value=44 Score=28.07 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=35.6
Q ss_pred CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCc
Q psy13219 73 TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSR 115 (193)
Q Consensus 73 ~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~R 115 (193)
+-+-.||--+++.+..++++.+.+.+||.|-+--. +|+.|.=
T Consensus 150 ~a~~VQLgAl~n~dranel~~~Lr~~G~~ayi~~~-~p~qg~l 191 (226)
T COG3147 150 QAFVVQLGALKNADRANELVAKLRGAGYRAYIEPS-TPVQGDL 191 (226)
T ss_pred cceeehhhhhhhHHHHHHHHHHHHhCCCceeeccc-CCCCCce
Confidence 44568998999999999999999999999998887 7766543
No 209
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=35.71 E-value=97 Score=26.20 Aligned_cols=58 Identities=9% Similarity=0.040 Sum_probs=36.7
Q ss_pred eeeeccCccccHHHHHhhCCCCceEEEEEe----------------------------------ecC-HHHHHHHHHHHH
Q psy13219 52 IMILSLMSTTSLEEVRAQNPSTTLWLQMYI----------------------------------FKD-RALSLQMVQRAE 96 (193)
Q Consensus 52 ~~~lst~ss~s~eei~~~~~~~~~wfQlY~----------------------------------~~d-r~~~~~ll~RAe 96 (193)
..++||+....+..+....|.-+.. .|+. ..+ .-.+.+++++|+
T Consensus 177 ~v~isSF~~~~l~~~~~~~p~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 255 (290)
T cd08607 177 RIIFSSFDADICTMLRFKQNKYPVL-FLTQGKTQRYPEFMDLRTRTFEIAVNFAQAEELLGVNLHSEDLLKDPSQIELAK 255 (290)
T ss_pred CEEEEcCCHHHHHHHHHhCcCCCEE-EEecCCCCccccccchHHHhHHHHHHHHHHcCCceeEechhhhhcChHHHHHHH
Confidence 6788999888888887765533322 2221 101 113457788888
Q ss_pred HcCCcEEEEee--ccC
Q psy13219 97 RSGYSAIVITM--DTA 110 (193)
Q Consensus 97 ~AG~~AlvvTV--D~p 110 (193)
++|.+-.+-|| |.+
T Consensus 256 ~~Gl~v~~wTv~~n~~ 271 (290)
T cd08607 256 SLGLVVFCWGDDLNDP 271 (290)
T ss_pred HcCCEEEEECCCCCCH
Confidence 88888888888 654
No 210
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=35.68 E-value=1.7e+02 Score=26.59 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhccCceeeec---cCccccHHHHHhhCCCC---ceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219 37 DGEVATARAAGMMDAIMILS---LMSTTSLEEVRAQNPST---TLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 37 ~gE~~~araA~~~g~~~~ls---t~ss~s~eei~~~~~~~---~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT 106 (193)
.|.-|+|+||..+|.-+.-+ |=+|.=+|.+++..+++ ..|.|. .|..-....+-=|-.+|.++..-|
T Consensus 8 ~GNeAvA~aa~~Ag~~v~a~YPITPsTei~e~la~~~~~g~~~~~~v~~---EsE~aA~~~~~GAs~aGaRa~TaT 80 (394)
T PRK08367 8 KANEAAAWAAKLAKPKVIAAFPITPSTLVPEKISEFVANGELDAEFIKV---ESEHSAISACVGASAAGVRTFTAT 80 (394)
T ss_pred cHHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhcCCcCeEEEEe---CCHHHHHHHHHHHHhhCCCeEeee
Confidence 69999999999998877654 44555566666654432 345554 466555666767777888876444
No 211
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=35.67 E-value=38 Score=29.78 Aligned_cols=29 Identities=7% Similarity=0.078 Sum_probs=24.5
Q ss_pred ecCHHHHHHHHHHHHHcCCcEEEEeeccC
Q psy13219 82 FKDRALSLQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 82 ~~dr~~~~~ll~RAe~AG~~AlvvTVD~p 110 (193)
+.....+.+++++|+++|.+-.+-|||.+
T Consensus 228 ~~~~~l~~~~v~~a~~~Gl~V~vWTVNd~ 256 (316)
T cd08610 228 LAYKKLFSNDIRDYKAANIHTNVYVINEP 256 (316)
T ss_pred cchhhCCHHHHHHHHHCCCEEEEECCCCH
Confidence 33345678999999999999999999986
No 212
>PF10903 DUF2691: Protein of unknown function (DUF2691); InterPro: IPR020216 This entry represents a group of uncharacterised proteins.
Probab=35.66 E-value=1.1e+02 Score=24.26 Aligned_cols=33 Identities=27% Similarity=0.479 Sum_probs=26.8
Q ss_pred eEEEEEeecCHHHHHHHHHHHHHcCCcE-EEEeec
Q psy13219 75 LWLQMYIFKDRALSLQMVQRAERSGYSA-IVITMD 108 (193)
Q Consensus 75 ~wfQlY~~~dr~~~~~ll~RAe~AG~~A-lvvTVD 108 (193)
..+++| .||.+.++.|-+.|+..||.- -.+|-.
T Consensus 111 ~yv~Iy-cKd~~~i~~lyqna~~~gy~~i~yITde 144 (153)
T PF10903_consen 111 SYVSIY-CKDQEIIESLYQNAQNQGYENIEYITDE 144 (153)
T ss_pred cEEEEE-EcCHHHHHHHHHHHHHCCceEEEEEecc
Confidence 367887 799999999999999999994 455543
No 213
>PLN02826 dihydroorotate dehydrogenase
Probab=35.55 E-value=28 Score=31.77 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.4
Q ss_pred CCCCCcceECCceeCCceeecc
Q psy13219 6 CDRDSGLTVLGTRYRCPVGIAP 27 (193)
Q Consensus 6 ~~~d~~t~~lG~~~~~P~~iaP 27 (193)
.+++++++++|.+++-||++|.
T Consensus 70 ~~~~L~~~~~Gl~f~NPvglAA 91 (409)
T PLN02826 70 DPSVLGVEVWGRTFSNPIGLAA 91 (409)
T ss_pred CCCCcceEECCEECCCCCEECc
Confidence 4567899999999999999976
No 214
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=35.47 E-value=1.9e+02 Score=23.53 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE
Q psy13219 84 DRALSLQMVQRAERSGYSAIVI 105 (193)
Q Consensus 84 dr~~~~~ll~RAe~AG~~Alvv 105 (193)
|.+.+.+.++++.++|++.+.+
T Consensus 192 ~~~~~l~~~~~~~~~Ga~gv~v 213 (235)
T cd00958 192 SEEEFLKMVYDAMEAGAAGVAV 213 (235)
T ss_pred CHHHHHHHHHHHHHcCCcEEEe
Confidence 3444555666666666665544
No 215
>PLN02245 ATP phosphoribosyl transferase
Probab=35.39 E-value=1.9e+02 Score=26.49 Aligned_cols=61 Identities=16% Similarity=0.191 Sum_probs=47.3
Q ss_pred HhccCceeeeccCccccHHHHHhh------CCC-----------------CceEEEEEeecCHHHHHHHHHHHHHcCCcE
Q psy13219 46 AGMMDAIMILSLMSTTSLEEVRAQ------NPS-----------------TTLWLQMYIFKDRALSLQMVQRAERSGYSA 102 (193)
Q Consensus 46 A~~~g~~~~lst~ss~s~eei~~~------~~~-----------------~~~wfQlY~~~dr~~~~~ll~RAe~AG~~A 102 (193)
-.+.+-.|+.-.....++|+|.+. .|+ ..-|+-+...-+++...+++++-+++|++.
T Consensus 298 l~A~~~~~v~~Nvp~~~le~v~~~~~~~~~lPG~~~PTVspl~~~~~~~~~~~w~AV~~vV~~~~v~~~~~~Lk~~GA~~ 377 (403)
T PLN02245 298 LRAEGQFTVTANMRGSSAEEVAERVLSQPSLSGLQGPTISPVYCKRDGKVAVDYYAIVICVPKKALYESVQQLRKIGGSG 377 (403)
T ss_pred HhhhcEEEEEecCChhhHHHHHHhhhccccCCCCCCCccccccccccccCCCCEEEEEEEEcHHHHHHHHHHHHHcCCCe
Confidence 344556667777777888888766 110 125888998999999999999999999999
Q ss_pred EEEe
Q psy13219 103 IVIT 106 (193)
Q Consensus 103 lvvT 106 (193)
|.|+
T Consensus 378 IlV~ 381 (403)
T PLN02245 378 VLVS 381 (403)
T ss_pred EEEE
Confidence 9886
No 216
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=35.38 E-value=48 Score=30.65 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhh
Q psy13219 86 ALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120 (193)
Q Consensus 86 ~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r 120 (193)
+...+-+++|++.|+.++++.+||| |-+-...|
T Consensus 43 ~~l~r~l~~A~~~~a~~vvl~ldTP--GGl~~sm~ 75 (436)
T COG1030 43 DYLQRALQSAEEENAAAVVLELDTP--GGLLDSMR 75 (436)
T ss_pred HHHHHHHHHHHhCCCcEEEEEecCC--CchHHHHH
Confidence 3556778899999999999999999 55543333
No 217
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=35.25 E-value=1.3e+02 Score=29.40 Aligned_cols=62 Identities=21% Similarity=0.206 Sum_probs=43.4
Q ss_pred eeeccCccccHHHHHhhCCCCceEEEEEeec----------------CHHHHHHHHHHHHHcCCcEEEEeeccCC-CCCc
Q psy13219 53 MILSLMSTTSLEEVRAQNPSTTLWLQMYIFK----------------DRALSLQMVQRAERSGYSAIVITMDTAV-LGSR 115 (193)
Q Consensus 53 ~~lst~ss~s~eei~~~~~~~~~wfQlY~~~----------------dr~~~~~ll~RAe~AG~~AlvvTVD~pv-~G~R 115 (193)
.+.|+.|+.|+.+|++......+++=++++. |++....+.+-++..|-..+++ -|+|- .+||
T Consensus 423 ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v-~d~pGfv~nR 501 (715)
T PRK11730 423 ILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYASKMGKTPIVV-NDCPGFFVNR 501 (715)
T ss_pred EEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHHHHHHhCCceEEe-cCcCchhHHH
Confidence 3456777889999998764322333333322 7788888888889999999988 69885 3455
No 218
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=35.23 E-value=1.9e+02 Score=23.47 Aligned_cols=71 Identities=8% Similarity=-0.023 Sum_probs=36.7
Q ss_pred HHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccC
Q psy13219 40 VATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 40 ~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~p 110 (193)
..+.+.|.+.|++.++-.......+.+....+.....|--.-..+.+...+.+++..+.|++.++||.-.-
T Consensus 128 ~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~vvvT~G~~ 198 (264)
T cd01940 128 EKALQALVGAGALISFDFSDRWDDDYLQLVCPYVDFAFFSASDLSDEEVKAKLKEAVSRGAKLVIVTRGED 198 (264)
T ss_pred HHHHHHHHHcCCEEEEcCcccCCHHHHHhhcccCCEEEechhhcCcchHHHHHHHHHHcCCCEEEEEECCC
Confidence 35667777888887775444333333333333222222110011112233445555577999999998753
No 219
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=35.16 E-value=39 Score=28.58 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=29.4
Q ss_pred HHHHHHHHhccCceeeeccCccccHHHHHhhC-------CCCc---eEEEEEeecCHHHHHHHHHHHH
Q psy13219 39 EVATARAAGMMDAIMILSLMSTTSLEEVRAQN-------PSTT---LWLQMYIFKDRALSLQMVQRAE 96 (193)
Q Consensus 39 E~~~araA~~~g~~~~lst~ss~s~eei~~~~-------~~~~---~wfQlY~~~dr~~~~~ll~RAe 96 (193)
...+-+.+++.|.|++|||.. .+++||..+. .... +-.+-|+....+.+...|..-+
T Consensus 102 n~~lL~~~A~tgkPvIlSTG~-stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~ 168 (241)
T PF03102_consen 102 NLPLLEYIAKTGKPVILSTGM-STLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLK 168 (241)
T ss_dssp -HHHHHHHHTT-S-EEEE-TT---HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHH
T ss_pred CHHHHHHHHHhCCcEEEECCC-CCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHH
Confidence 368999999999999999987 5777776542 1111 1234566666665555554443
No 220
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=34.86 E-value=1.4e+02 Score=25.76 Aligned_cols=71 Identities=13% Similarity=0.094 Sum_probs=45.5
Q ss_pred HHHHHHHHhccCc------eeeeccCccccHHHHHhhCCCCceEEEEEe-ecC-------------------HHH-----
Q psy13219 39 EVATARAAGMMDA------IMILSLMSTTSLEEVRAQNPSTTLWLQMYI-FKD-------------------RAL----- 87 (193)
Q Consensus 39 E~~~araA~~~g~------~~~lst~ss~s~eei~~~~~~~~~wfQlY~-~~d-------------------r~~----- 87 (193)
+..+...-.+.|. ..++||+....++.+.+.. .-+..+-+.. ..| ...
T Consensus 154 ~~~v~~~l~~~~~~~~~~~~v~i~SF~~~~L~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~v~~~~~~~~~~~ 232 (300)
T cd08604 154 VDAVLDALTNAGYDNQTAQKVLIQSTDSSVLAAFKKQI-SYERVYVVDETIRDASDSSIEEIKKFADAVVIDRGSVFPVS 232 (300)
T ss_pred HHHHHHHHHHcCCCCCCCCeEEEEcCCHHHHHHHHhcc-CCceEEEecCcccccChhHHHHHHHhccEEEeChhhccccc
Confidence 3456666666665 4688999888888887754 2222221110 000 000
Q ss_pred ------HHHHHHHHHHcCCcEEEEeeccC
Q psy13219 88 ------SLQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 88 ------~~~ll~RAe~AG~~AlvvTVD~p 110 (193)
..+++++|+++|.+-.+-||+.+
T Consensus 233 ~~~~~~~~~~v~~a~~~Gl~v~vwTvn~~ 261 (300)
T cd08604 233 TSFLTRQTNVVEKLQSANLTVYVEVLRNE 261 (300)
T ss_pred CCcccCchHHHHHHHHCCCEEEEEEecCC
Confidence 22789999999999999999865
No 221
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=34.68 E-value=3.2e+02 Score=24.08 Aligned_cols=49 Identities=10% Similarity=0.120 Sum_probs=28.9
Q ss_pred cHHHHHhhCCCCceEEEEEeecCH-HHHHHHHHHHHHcCCcEEEEeeccC
Q psy13219 62 SLEEVRAQNPSTTLWLQMYIFKDR-ALSLQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 62 s~eei~~~~~~~~~wfQlY~~~dr-~~~~~ll~RAe~AG~~AlvvTVD~p 110 (193)
.+++|..+...+..++.+....++ +...+.++.|++.|++..+.-.|+.
T Consensus 90 ~~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~ 139 (337)
T PRK08195 90 TVDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSH 139 (337)
T ss_pred cHHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEecc
Confidence 456665554444556665554433 4556677777777776666555553
No 222
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=34.47 E-value=78 Score=21.81 Aligned_cols=56 Identities=27% Similarity=0.252 Sum_probs=37.8
Q ss_pred CchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCC
Q psy13219 35 HADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGS 114 (193)
Q Consensus 35 ~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~ 114 (193)
|.|||+ +|+.+..+|+-.+=+|.+ -+ -.+..+++++..+ .|+ -+++|.|.|....
T Consensus 19 s~DGe~-ia~~~~~~G~~~iRGSs~-----------rg-----------g~~Alr~~~~~lk-~G~-~~~itpDGPrGP~ 73 (74)
T PF04028_consen 19 SRDGEL-IARVLERFGFRTIRGSSS-----------RG-----------GARALREMLRALK-EGY-SIAITPDGPRGPR 73 (74)
T ss_pred CcCHHH-HHHHHHHcCCCeEEeCCC-----------Cc-----------HHHHHHHHHHHHH-CCC-eEEEeCCCCCCCC
Confidence 678886 467778888877776611 11 1245667777766 676 6799999997654
Q ss_pred c
Q psy13219 115 R 115 (193)
Q Consensus 115 R 115 (193)
|
T Consensus 74 r 74 (74)
T PF04028_consen 74 R 74 (74)
T ss_pred C
Confidence 4
No 223
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=34.44 E-value=2.1e+02 Score=24.95 Aligned_cols=69 Identities=12% Similarity=0.075 Sum_probs=43.1
Q ss_pred chHHHHHHHHHhccCceeee-cc-Ccccc-----HHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeec
Q psy13219 36 ADGEVATARAAGMMDAIMIL-SL-MSTTS-----LEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMD 108 (193)
Q Consensus 36 ~~gE~~~araA~~~g~~~~l-st-~ss~s-----~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD 108 (193)
..-...+-++|.+.|+-..+ +. ..+.. ++++.+...+++ +..+.|.+.....+++|.++|...+.+.-|
T Consensus 39 ~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgI----iv~~~d~~al~~~l~~a~~~gIpVV~~d~~ 114 (336)
T PRK15408 39 TSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAI----IVSAVSPDGLCPALKRAMQRGVKVLTWDSD 114 (336)
T ss_pred HHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEE----EEecCCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 34556778888899987777 32 22111 344444444543 224668787788999999999765554444
No 224
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=34.22 E-value=1.7e+02 Score=24.67 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=42.3
Q ss_pred HHHHHHHHHhccCc--eeeeccCccc------cHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecc
Q psy13219 38 GEVATARAAGMMDA--IMILSLMSTT------SLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDT 109 (193)
Q Consensus 38 gE~~~araA~~~g~--~~~lst~ss~------s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~ 109 (193)
-....-++|.+.|. .......... -+|+......+++ +..+.|.......+++|.++|.. ||++|+
T Consensus 51 ~~~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daI----iv~~~d~~~~~~~v~~a~~aGIp--Vv~~d~ 124 (322)
T COG1879 51 VRKGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAI----IINPVDPDALTPAVKKAKAAGIP--VVTVDS 124 (322)
T ss_pred HHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHHHHHcCCCEE----EEcCCChhhhHHHHHHHHHCCCc--EEEEec
Confidence 34456677777784 3333332111 2344433334442 34578999999999999999965 455555
Q ss_pred CCCCC
Q psy13219 110 AVLGS 114 (193)
Q Consensus 110 pv~G~ 114 (193)
...+.
T Consensus 125 ~~~~~ 129 (322)
T COG1879 125 DIPGP 129 (322)
T ss_pred CCCCC
Confidence 54443
No 225
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=33.93 E-value=99 Score=26.71 Aligned_cols=77 Identities=16% Similarity=0.288 Sum_probs=48.1
Q ss_pred cCCchHHHHHHHHHhccCceeeeccCcc----ccHHHH-------HhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCc
Q psy13219 33 LAHADGEVATARAAGMMDAIMILSLMST----TSLEEV-------RAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYS 101 (193)
Q Consensus 33 l~~~~gE~~~araA~~~g~~~~lst~ss----~s~eei-------~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~ 101 (193)
..+.+-=.++.+||.+.+.|.++...-+ .+++.+ ++.. ..|... .-|.....+.+++|-++||+
T Consensus 25 ~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~-~vpv~l----HlDH~~~~e~i~~Al~~G~t 99 (281)
T PRK06806 25 VANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQA-KVPVAV----HFDHGMTFEKIKEALEIGFT 99 (281)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHC-CCCEEE----ECCCCCCHHHHHHHHHcCCC
Confidence 3344555799999999999999975432 233332 2222 234343 34666677889999999998
Q ss_pred EEEEeeccCCCCCch
Q psy13219 102 AIVITMDTAVLGSRY 116 (193)
Q Consensus 102 AlvvTVD~pv~G~Re 116 (193)
.+.+ |......+|
T Consensus 100 sVm~--d~s~~~~~e 112 (281)
T PRK06806 100 SVMF--DGSHLPLEE 112 (281)
T ss_pred EEEE--cCCCCCHHH
Confidence 7654 444444433
No 226
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.86 E-value=68 Score=26.82 Aligned_cols=59 Identities=20% Similarity=0.138 Sum_probs=40.7
Q ss_pred HHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219 40 VATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 40 ~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT 106 (193)
...+++|.++|.-|++|-..+..+=+.+.... .+|++. -.+-.-+.+|.++|++.+=+-
T Consensus 81 ~e~a~~a~~aGA~FiVsP~~~~~v~~~~~~~~------i~~iPG--~~TpsEi~~A~~~Ga~~vKlF 139 (222)
T PRK07114 81 AATAALYIQLGANFIVTPLFNPDIAKVCNRRK------VPYSPG--CGSLSEIGYAEELGCEIVKLF 139 (222)
T ss_pred HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcC------CCEeCC--CCCHHHHHHHHHCCCCEEEEC
Confidence 46678888888888888877666666655432 235555 345566788889999887554
No 227
>COG4195 Phage-related replication protein [General function prediction only]
Probab=33.84 E-value=31 Score=28.48 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=36.5
Q ss_pred EEEe-ecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcC
Q psy13219 78 QMYI-FKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNK 122 (193)
Q Consensus 78 QlY~-~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~ 122 (193)
|+.+ -.||++...+.++-+.|||+|-+...|..-.|--+.++-|+
T Consensus 115 ~~lvGG~dR~~aa~i~~~L~~aGF~a~L~~~~~~LaG~hpnNi~Nr 160 (208)
T COG4195 115 QTLVGGTDRELAAHIARALQLAGFSAELANSKHRLAGLHPNNIVNR 160 (208)
T ss_pred eeeecCccHHHHHHHHHHHhhCCccHHhhcCCCcCCCCCccccccc
Confidence 4544 35899999999999999999988889988888887776554
No 228
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=33.76 E-value=46 Score=21.87 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHhcCCCCEEE
Q psy13219 170 SVDWDDVRSLVQATKLPIVC 189 (193)
Q Consensus 170 ~~tW~di~wlr~~~~lPivl 189 (193)
.-+|+.+++|++.++.||.+
T Consensus 47 ~~d~~~~~~l~~~~~~pia~ 66 (67)
T PF01188_consen 47 PDDLDGLAELRQQTSVPIAA 66 (67)
T ss_dssp TTSHHHHHHHHHHCSSEEEE
T ss_pred CCCHHHHHHHHHhCCCCEEe
Confidence 44689999999999999975
No 229
>PRK09248 putative hydrolase; Validated
Probab=33.09 E-value=43 Score=27.80 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEeeccC
Q psy13219 86 ALSLQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 86 ~~~~~ll~RAe~AG~~AlvvTVD~p 110 (193)
...++++++|.+.|+++|++|=-.|
T Consensus 19 ~~~~e~v~~A~~~G~~~i~iTdH~~ 43 (246)
T PRK09248 19 STLHENAAEAKQKGLKLFAITDHGP 43 (246)
T ss_pred CCHHHHHHHHHHCCCCEEEECCCCC
Confidence 3578999999999999999994443
No 230
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=32.97 E-value=1.1e+02 Score=26.52 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=40.3
Q ss_pred CchHHHHHHHHHhccCceeeeccCcc-----ccHHH-------HHhhCC-CCceEEEEEeecCHHHHHHHHHHHHHcCCc
Q psy13219 35 HADGEVATARAAGMMDAIMILSLMST-----TSLEE-------VRAQNP-STTLWLQMYIFKDRALSLQMVQRAERSGYS 101 (193)
Q Consensus 35 ~~~gE~~~araA~~~g~~~~lst~ss-----~s~ee-------i~~~~~-~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~ 101 (193)
+.+.=.++.+||.+.+.|.+|...-. .+++. +++... ..|. -+.=|.....+.+.+|-++||+
T Consensus 27 n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV----~lHLDHg~~~e~i~~ai~~Gft 102 (285)
T PRK07709 27 NLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPV----AIHLDHGSSFEKCKEAIDAGFT 102 (285)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcE----EEECCCCCCHHHHHHHHHcCCC
Confidence 44445688888888888888864321 23332 222221 1232 3344666667777888888888
Q ss_pred EEEEe
Q psy13219 102 AIVIT 106 (193)
Q Consensus 102 AlvvT 106 (193)
.+++.
T Consensus 103 SVM~D 107 (285)
T PRK07709 103 SVMID 107 (285)
T ss_pred EEEEe
Confidence 86654
No 231
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=32.96 E-value=1.5e+02 Score=27.68 Aligned_cols=54 Identities=22% Similarity=0.204 Sum_probs=40.1
Q ss_pred CCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhh
Q psy13219 7 DRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQ 69 (193)
Q Consensus 7 ~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~ 69 (193)
++|++|. +..++..||+-|||- -=-|..+|-|-++.|=.-++-. +.++|+-++.
T Consensus 31 ~v~~~t~-~~~~l~~P~vsa~md------tvTe~~MAi~~A~~GGigvIh~--n~~i~~qae~ 84 (475)
T TIGR01303 31 DVDLSTA-DGTGTTIPLVVANMT------AVAGRRMAETVARRGGIVILPQ--DLPIPAVKQT 84 (475)
T ss_pred ceeeccc-ccCccccceeeccch------hhHHHHHHHHHHHCCCEEEEeC--CCCHHHHHHH
Confidence 6688887 668999999999962 2367788888888877777754 6677766544
No 232
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=32.83 E-value=1.3e+02 Score=27.11 Aligned_cols=67 Identities=24% Similarity=0.231 Sum_probs=43.3
Q ss_pred chHHHHHHHHHhccCceeeec---cCccccHHHHHhhCCC-CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEE
Q psy13219 36 ADGEVATARAAGMMDAIMILS---LMSTTSLEEVRAQNPS-TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVI 105 (193)
Q Consensus 36 ~~gE~~~araA~~~g~~~~ls---t~ss~s~eei~~~~~~-~~~wfQlY~~~dr~~~~~ll~RAe~AG~~Alvv 105 (193)
-.|.-|+|+||..+|+-++.+ |=+|.=+|-+++..++ +..++|. .|......+.-=|..+|.+++.-
T Consensus 7 ~~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~~~~~~vq~---E~E~aA~~~a~GAs~aG~Ra~Ta 77 (376)
T PRK08659 7 LQGNEACAEGAIAAGCRFFAGYPITPSTEIAEVMARELPKVGGVFIQM---EDEIASMAAVIGASWAGAKAMTA 77 (376)
T ss_pred eehHHHHHHHHHHhCCCEEEEcCCCChHHHHHHHHHhhhhhCCEEEEe---CchHHHHHHHHhHHhhCCCeEee
Confidence 369999999999999887664 4444445666554432 1234443 35555556666677788887654
No 233
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=32.60 E-value=43 Score=29.04 Aligned_cols=24 Identities=21% Similarity=0.552 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHhcCCCCEEEec
Q psy13219 168 DDSVDWDDVRSLVQATKLPIVCKG 191 (193)
Q Consensus 168 ~~~~tW~di~wlr~~~~lPivlKG 191 (193)
.|.++||-|+.|++.++.||||=|
T Consensus 184 ~p~Ldf~~L~~I~~~~~iPLVlHG 207 (282)
T TIGR01858 184 TPKLDFDRLAEIREVVDVPLVLHG 207 (282)
T ss_pred CCccCHHHHHHHHHHhCCCeEEec
Confidence 589999999999999999999977
No 234
>PF01870 Hjc: Archaeal holliday junction resolvase (hjc); InterPro: IPR002732 This entry represents Holliday junction resolvases (hjc gene) and related proteins, primarily from archaeal species []. The Holliday junction is an essential intermediate of homologous recombination. Holliday junctions are four-stranded DNA complexes that are formed during recombination and related DNA repair events. In the presence of divalent cations, these junctions exist predominantly as the stacked-X form in which the double-helical segments are coaxially stacked and twisted by 60 degrees in a right-handed direction across the junction cross-over. In this structure, the stacked arms resemble two adjacent double-helices, but are linked at the junction by two common strands that cross-over between the duplexes []. During homologous recombination, genetic information is physically exchanged between parental DNAs via crossing single strands of the same polarity within the four-way Holliday structure. This process is terminated by the endonucleolytic activity of resolvases, which convert the four-way DNA back to two double strands.; PDB: 2WJ0_A 2WIZ_B 2WIW_B 2WCW_C 2WCZ_A 1HH1_A 1GEF_D 1IPI_B 2EO0_B 1OB9_A ....
Probab=32.51 E-value=1.3e+02 Score=21.46 Aligned_cols=65 Identities=9% Similarity=0.042 Sum_probs=43.1
Q ss_pred HHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeec------CHHHHHHHHHHHHHcCCcEEEE
Q psy13219 39 EVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFK------DRALSLQMVQRAERSGYSAIVI 105 (193)
Q Consensus 39 E~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~------dr~~~~~ll~RAe~AG~~Alvv 105 (193)
|..+.+--.+.|-..+=+-.|... ||.+..++....+|+-..+ +.+..+.|++-++..|++.++.
T Consensus 3 Erel~~~L~~~Gf~v~R~~~Sg~~--DiiA~~~~~~l~IEvKs~~~~~~~l~~eqve~L~~f~~~fg~~p~iA 73 (88)
T PF01870_consen 3 ERELVKILWERGFAVVRAAGSGGG--DIIAGKGGRYLAIEVKSTSKDKIYLEKEQVEKLKEFSKRFGAEPLIA 73 (88)
T ss_dssp HHHHHHHHHHTT-EEEEBSCCSSS--SEEEEETTEEEEEEEEEESSSEEEEEHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHhCCcEEEEecCCCCc--CEEEECCCEEEEEEEeeccCCceeECHHHHHHHHHHHHHhCCeEEEE
Confidence 555555556666555544444333 7776655555666665544 6788899999999999988775
No 235
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=32.10 E-value=1.8e+02 Score=24.10 Aligned_cols=64 Identities=13% Similarity=0.151 Sum_probs=39.1
Q ss_pred HHHHHHhccCceeeeccCccccHHHHHhhC--CCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecc
Q psy13219 41 ATARAAGMMDAIMILSLMSTTSLEEVRAQN--PSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDT 109 (193)
Q Consensus 41 ~~araA~~~g~~~~lst~ss~s~eei~~~~--~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~ 109 (193)
.+.+-+...++|.+++- .-.|+|++.... +....-.--...+|+++..+++++.. +.+++.+|.
T Consensus 66 ~i~~i~~~~~~pv~vgG-Girs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~----~~i~vsld~ 131 (241)
T PRK14024 66 LLAEVVGKLDVKVELSG-GIRDDESLEAALATGCARVNIGTAALENPEWCARVIAEHG----DRVAVGLDV 131 (241)
T ss_pred HHHHHHHHcCCCEEEcC-CCCCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhh----hhEEEEEEE
Confidence 34455556678888763 456777776543 11112233345678998888887653 457777776
No 236
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=32.05 E-value=61 Score=30.74 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=27.2
Q ss_pred eEEEEEeecCHHH----HHHHHHHHHHcCCcEEEEee
Q psy13219 75 LWLQMYIFKDRAL----SLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 75 ~wfQlY~~~dr~~----~~~ll~RAe~AG~~AlvvTV 107 (193)
.|||+|...-++. ..++++++++.|+..|++|-
T Consensus 423 ~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~ 459 (538)
T PLN02617 423 AWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNC 459 (538)
T ss_pred eEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 4899999876653 35889999999999999873
No 237
>TIGR03620 F420_MSMEG_4141 probable F420-dependent oxidoreductase, MSMEG_4141 family. Members of this protein family, related to F420-dependent oxidoreductases within the larger family of a bacterial luciferase (an FMN-dependent enzyme), occurs only within the small subset of species that synthesize F420. Most such proteins are from members of the Actinobacteria, but at least one species, Sphingomonas wittichii, belongs to the Alphaproteobacteria.
Probab=31.89 E-value=53 Score=28.20 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=21.5
Q ss_pred eecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219 81 IFKDRALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 81 ~~~dr~~~~~ll~RAe~AG~~AlvvT 106 (193)
+..|.+...++.++||++||..+++.
T Consensus 13 ~~~~~~~~~~~a~~aE~~Gfd~~w~~ 38 (278)
T TIGR03620 13 WSPDARARAEAAAELEELGYGALWLG 38 (278)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 34556667789999999999999988
No 238
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=31.77 E-value=46 Score=28.94 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=44.6
Q ss_pred eeCCceeecchhccccCCchHHH---HHHHHHhccCceeeeccCccccHHHHHhhCCCC--ceEE---EEEeecCHHHHH
Q psy13219 18 RYRCPVGIAPSAMQKLAHADGEV---ATARAAGMMDAIMILSLMSTTSLEEVRAQNPST--TLWL---QMYIFKDRALSL 89 (193)
Q Consensus 18 ~~~~P~~iaP~g~~~l~~~~gE~---~~araA~~~g~~~~lst~ss~s~eei~~~~~~~--~~wf---QlY~~~dr~~~~ 89 (193)
+...|++|.=. -..+-|...+. .+-..|.+.++|.+|=-==..++|.|..+...| ..+| ++=+-.+-+.++
T Consensus 40 e~~sPvIlq~s-~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~ 118 (286)
T PRK12738 40 EMRSPVILAGT-PGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVK 118 (286)
T ss_pred HHCCCEEEEcC-cchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEeecCCCCCHHHHHHHHH
Confidence 34568887421 11122223332 233345567899988644445788887663211 0111 122233456788
Q ss_pred HHHHHHHHcCC
Q psy13219 90 QMVQRAERSGY 100 (193)
Q Consensus 90 ~ll~RAe~AG~ 100 (193)
+.++.|.+.|+
T Consensus 119 evv~~Ah~~gv 129 (286)
T PRK12738 119 SVVDFCHSQDC 129 (286)
T ss_pred HHHHHHHHcCC
Confidence 89999988775
No 239
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=31.66 E-value=1.5e+02 Score=25.06 Aligned_cols=69 Identities=12% Similarity=0.134 Sum_probs=43.6
Q ss_pred HHHHHHhccCc--eeeeccCccccHHHHHhhCCCCceEEEEEe-------------------------------e-cCHH
Q psy13219 41 ATARAAGMMDA--IMILSLMSTTSLEEVRAQNPSTTLWLQMYI-------------------------------F-KDRA 86 (193)
Q Consensus 41 ~~araA~~~g~--~~~lst~ss~s~eei~~~~~~~~~wfQlY~-------------------------------~-~dr~ 86 (193)
.+.+.-.+.|. ..++||+....+..+....|.-+.++ ++- . ....
T Consensus 154 ~v~~~i~~~~~~~~vi~sSF~~~~l~~~~~~~p~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (286)
T cd08606 154 TVLEKVFDYGAGRNIIFSSFTPDICILLSLKQPGYPVLF-LTEAGKAPDMDVRAASLQEAIRFAKQWNLLGLVSAAEPLV 232 (286)
T ss_pred HHHHHHHhcCCCCceEEEcCCHHHHHHHHhhCcCCCEEE-EeCCCCCccCCchhhcHHHHHHHHHHCCCeEEEechHHhh
Confidence 44555555554 67889998888888877655433332 110 0 0112
Q ss_pred HHHHHHHHHHHcCCcEEEEee--ccC
Q psy13219 87 LSLQMVQRAERSGYSAIVITM--DTA 110 (193)
Q Consensus 87 ~~~~ll~RAe~AG~~AlvvTV--D~p 110 (193)
.+.+++++++++|.+-.+.|| |.+
T Consensus 233 ~~~~~v~~~~~~Gl~v~~WTv~~n~~ 258 (286)
T cd08606 233 MCPRLIQVVKRSGLVCVSYGVLNNDP 258 (286)
T ss_pred hChHHHHHHHHCCcEEEEECCccCCH
Confidence 345788999999999999998 543
No 240
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=31.63 E-value=2.1e+02 Score=22.60 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=32.0
Q ss_pred eeccCccccHHHHHhhCCCCceEEEEEeec----------------CHHHHHHHHHHHHHcCCcEEEEeec
Q psy13219 54 ILSLMSTTSLEEVRAQNPSTTLWLQMYIFK----------------DRALSLQMVQRAERSGYSAIVITMD 108 (193)
Q Consensus 54 ~lst~ss~s~eei~~~~~~~~~wfQlY~~~----------------dr~~~~~ll~RAe~AG~~AlvvTVD 108 (193)
+.|+.|+.+++++++......+++=++++. +.+....+.+-+++.|-.-+++ =|
T Consensus 110 lasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v-~D 179 (180)
T PF02737_consen 110 LASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETVDRVRALLRSLGKTPVVV-KD 179 (180)
T ss_dssp EEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHHHHHHHHHHHTT-EEEEE-ES
T ss_pred EEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHHHHHHHHHHHCCCEEEEe-cC
Confidence 456778899999998864333444444332 5666777777778888777766 44
No 241
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=31.52 E-value=72 Score=25.42 Aligned_cols=54 Identities=13% Similarity=0.015 Sum_probs=30.2
Q ss_pred HHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEE
Q psy13219 44 RAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVI 105 (193)
Q Consensus 44 raA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~Alvv 105 (193)
+.|.+.|.-++.+..+..++.+.+...+ .. ++..=. +.+-+.+|.++|++.+.+
T Consensus 70 ~~a~~~Ga~~i~~p~~~~~~~~~~~~~~-~~-----~i~gv~--t~~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 70 DAAIAAGAQFIVSPGLDPEVVKAANRAG-IP-----LLPGVA--TPTEIMQALELGADIVKL 123 (190)
T ss_pred HHHHHcCCCEEEcCCCCHHHHHHHHHcC-Cc-----EECCcC--CHHHHHHHHHCCCCEEEE
Confidence 4444455556666655555555555432 11 222211 445577788889988887
No 242
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=31.35 E-value=47 Score=29.48 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=38.0
Q ss_pred HHHHHHHhccCceeeeccCccccHHHHHhhC------CCC---ceE---EEEEeecCHHHHHHHHHHHHH
Q psy13219 40 VATARAAGMMDAIMILSLMSTTSLEEVRAQN------PST---TLW---LQMYIFKDRALSLQMVQRAER 97 (193)
Q Consensus 40 ~~~araA~~~g~~~~lst~ss~s~eei~~~~------~~~---~~w---fQlY~~~dr~~~~~ll~RAe~ 97 (193)
..+.+.+++.|.|+++||.. .+++||..+. ++. ..- ..-|+....+.....|...++
T Consensus 123 ~pLL~~~A~~gkPvilStGm-atl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~ 191 (329)
T TIGR03569 123 APLLKKIARFGKPVILSTGM-ATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKE 191 (329)
T ss_pred HHHHHHHHhcCCcEEEECCC-CCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHH
Confidence 68999999999999999998 4899997653 111 111 123665556655555555543
No 243
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=31.20 E-value=2e+02 Score=21.84 Aligned_cols=69 Identities=19% Similarity=0.073 Sum_probs=43.6
Q ss_pred CchHHHHHHHHHhccCceeeeccCccccHHHHHhhCC-CCceEEEEEe--ecCHHHHHHHHHHHHHcCCcEEE
Q psy13219 35 HADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNP-STTLWLQMYI--FKDRALSLQMVQRAERSGYSAIV 104 (193)
Q Consensus 35 ~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~-~~~~wfQlY~--~~dr~~~~~ll~RAe~AG~~Alv 104 (193)
|.-|=..++...++.|.-.+ --....|.|++.++.. ..+....+.. .......++++++.++.|...+.
T Consensus 16 H~lG~~iv~~~lr~~G~eVi-~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~ 87 (137)
T PRK02261 16 HAVGNKILDRALTEAGFEVI-NLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDIL 87 (137)
T ss_pred hHHHHHHHHHHHHHCCCEEE-ECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCe
Confidence 55566777778888876543 3344678888876541 2333444433 44566778888888888775443
No 244
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=31.16 E-value=85 Score=20.31 Aligned_cols=23 Identities=17% Similarity=0.188 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHcCCcEEEEee
Q psy13219 85 RALSLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 85 r~~~~~ll~RAe~AG~~AlvvTV 107 (193)
.+..++|-++|.++|++.-.||-
T Consensus 18 ~d~~~~la~kAd~~GA~~y~I~~ 40 (56)
T PF07338_consen 18 DDAEEALAKKADEKGAKYYRITS 40 (56)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEE
Confidence 35667889999999999887763
No 245
>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv
Probab=31.02 E-value=1.9e+02 Score=25.08 Aligned_cols=70 Identities=11% Similarity=0.042 Sum_probs=47.4
Q ss_pred HHHHHHHHHhccCc-----eeeeccCccccHHHHHhhC--CCCceEEEEE-eec-------C----------------HH
Q psy13219 38 GEVATARAAGMMDA-----IMILSLMSTTSLEEVRAQN--PSTTLWLQMY-IFK-------D----------------RA 86 (193)
Q Consensus 38 gE~~~araA~~~g~-----~~~lst~ss~s~eei~~~~--~~~~~wfQlY-~~~-------d----------------r~ 86 (193)
-+..+++...+.|. ..+++|+...+|+.+.+.. |.- |+. ... . ..
T Consensus 151 ~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~~p~v----~~~~l~~~~~~~~~~~~l~~~~~~a~~v~~~~~ 226 (302)
T cd08571 151 SVDAVLTSLSKAGYDQTAKKVYISSPDSSVLKSFKKRVGTKLV----FRVLDVDDTEPDTLLSNLTEIKKFASGVLVPKS 226 (302)
T ss_pred HHHHHHHHHHHcCCCCCCCCEEEeCCCHHHHHHHHhccCCCce----EEEeecCCCcCCCChhHHHHHHHhcCccccChh
Confidence 34566777777775 6789999999999998876 431 211 100 0 00
Q ss_pred H-H-----------HHHHHHHHHcCCcEEEEeeccCC
Q psy13219 87 L-S-----------LQMVQRAERSGYSAIVITMDTAV 111 (193)
Q Consensus 87 ~-~-----------~~ll~RAe~AG~~AlvvTVD~pv 111 (193)
. . .+++++|+++|.+..+-||+.+.
T Consensus 227 ~~~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~~ 263 (302)
T cd08571 227 YIWPVDSDSFLTPQTSVVQDAHKAGLEVYVSGFANEF 263 (302)
T ss_pred HeeecCCCCcccCccHHHHHHHHcCCEEEEEEEecCc
Confidence 0 1 27899999999999999998653
No 246
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=31.02 E-value=2.4e+02 Score=25.87 Aligned_cols=81 Identities=14% Similarity=0.090 Sum_probs=54.0
Q ss_pred chHHHHHHHHHhccCceeeeccCccccHH----HHHh------------------hCCCCceEEEEEeecCHHHHHHHHH
Q psy13219 36 ADGEVATARAAGMMDAIMILSLMSTTSLE----EVRA------------------QNPSTTLWLQMYIFKDRALSLQMVQ 93 (193)
Q Consensus 36 ~~gE~~~araA~~~g~~~~lst~ss~s~e----ei~~------------------~~~~~~~wfQlY~~~dr~~~~~ll~ 93 (193)
|+-=...++..++.|.|+++.|+...-|+ .+.. -+-....=.-|.-++|-+..+.|..
T Consensus 145 pekfa~ave~v~~~~~pv~l~s~dpevmkaaLev~~dqkPllYaAte~n~~e~~klav~y~vplvl~a~~dl~~lk~la~ 224 (467)
T COG1456 145 PEKFAEAVEKVAEAGLPVILCSFDPEVMKAALEVVKDQKPLLYAATEDNWKEFAKLAVEYKVPLVLSAFNDLDDLKNLAV 224 (467)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhhccCceeeecccccHHHHHHHHhhcCCcEEEeccCCHHHHHHHHH
Confidence 33335777888889999999888654332 2222 1110111144555679999999999
Q ss_pred HHHHcCCcEEEEeeccCCCCCch
Q psy13219 94 RAERSGYSAIVITMDTAVLGSRY 116 (193)
Q Consensus 94 RAe~AG~~AlvvTVD~pv~G~Re 116 (193)
++.++|.+-||+.=-+-..|.--
T Consensus 225 ~~~~~Gi~divLdPgT~p~~egl 247 (467)
T COG1456 225 TYAQAGIKDIVLDPGTYPGGEGL 247 (467)
T ss_pred HHHHcCCceEEecCCcccCccch
Confidence 99999999999976665555443
No 247
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=30.97 E-value=1.2e+02 Score=25.41 Aligned_cols=24 Identities=4% Similarity=0.155 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCcEEEEeeccC
Q psy13219 87 LSLQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 87 ~~~~ll~RAe~AG~~AlvvTVD~p 110 (193)
.+.+++++++++|.+-.+.|||.+
T Consensus 219 ~~~~~v~~~~~~G~~v~vWTVNd~ 242 (264)
T cd08575 219 WWPNLFDHLRKRGIQVYLWVLNDE 242 (264)
T ss_pred cCHHHHHHHHhcCCcEEEEEECCH
Confidence 467899999999999999999985
No 248
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=30.84 E-value=88 Score=25.60 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=38.7
Q ss_pred eeeeccCccccHHHHHhhCCCCceEE---------------------EE-EeecCHHHHHHHHHHHHHcCCcEEEEeecc
Q psy13219 52 IMILSLMSTTSLEEVRAQNPSTTLWL---------------------QM-YIFKDRALSLQMVQRAERSGYSAIVITMDT 109 (193)
Q Consensus 52 ~~~lst~ss~s~eei~~~~~~~~~wf---------------------Ql-Y~~~dr~~~~~ll~RAe~AG~~AlvvTVD~ 109 (193)
..+++|++...++.+.+..|.-+.++ ++ |..-....+.+++++|+++|.+-.+.||+.
T Consensus 135 ~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~gl~v~~wTvn~ 214 (234)
T cd08570 135 RIILGLWHLDFLKYGKEVLPGFPVFHIGFSLDYARHFLNYSEKLVGISMHFVSLWGPFGQAFLPELKKNGKKVFVWTVNT 214 (234)
T ss_pred CEEEEeCCHHHHHHHHHhCCCCCeEEEEcCHHHHHHHhccccccceEEeeeehhhcccCHHHHHHHHHCCCEEEEEecCC
Confidence 56788888888888877655422211 00 000001146789999999999999999997
Q ss_pred C
Q psy13219 110 A 110 (193)
Q Consensus 110 p 110 (193)
+
T Consensus 215 ~ 215 (234)
T cd08570 215 E 215 (234)
T ss_pred H
Confidence 5
No 249
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=30.77 E-value=3.4e+02 Score=23.10 Aligned_cols=32 Identities=9% Similarity=0.234 Sum_probs=21.2
Q ss_pred CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219 73 TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 73 ~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT 106 (193)
-+.+.=+ ..+-+...+++++++++|+.+|.++
T Consensus 158 ~pv~vKl--~~~~~~~~~~a~~l~~~G~d~i~~~ 189 (301)
T PRK07259 158 VPVIVKL--TPNVTDIVEIAKAAEEAGADGLSLI 189 (301)
T ss_pred CCEEEEc--CCCchhHHHHHHHHHHcCCCEEEEE
Confidence 3444433 3344566788888999999888663
No 250
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=30.50 E-value=76 Score=22.86 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=25.8
Q ss_pred EEEEEeecCHHHHHHHHHHHHHcCCcEEEEeec
Q psy13219 76 WLQMYIFKDRALSLQMVQRAERSGYSAIVITMD 108 (193)
Q Consensus 76 wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD 108 (193)
.+=+-..+.-..+.+.++.|++.|++.|.+|=.
T Consensus 50 ~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 50 VIAISQSGETADTLAALRLAKEKGAKTVAITNV 82 (126)
T ss_pred EEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 333555566667889999999999999999965
No 251
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=30.34 E-value=55 Score=27.02 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeec
Q psy13219 85 RALSLQMVQRAERSGYSAIVITMD 108 (193)
Q Consensus 85 r~~~~~ll~RAe~AG~~AlvvTVD 108 (193)
..-.++++++|.+.|++.|++|==
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH 38 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNH 38 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecC
Confidence 456789999999999999999943
No 252
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=30.15 E-value=98 Score=24.99 Aligned_cols=52 Identities=19% Similarity=0.380 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCCCccchhhhhccccCcccchhhcccccccCCcchhhH
Q psy13219 83 KDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDY 162 (193)
Q Consensus 83 ~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (193)
.+.....++.++.+++|+++|-+..|--..+..-++++.
T Consensus 28 ~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~----------------------------------------- 66 (217)
T cd00331 28 REDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRA----------------------------------------- 66 (217)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHH-----------------------------------------
Q ss_pred hhhhCCCCCCHHHHHHHHhcCCCCEEEec
Q psy13219 163 VANQFDDSVDWDDVRSLVQATKLPIVCKG 191 (193)
Q Consensus 163 ~~~~~~~~~tW~di~wlr~~~~lPivlKG 191 (193)
+|+..+.||++||
T Consensus 67 ----------------i~~~v~iPi~~~~ 79 (217)
T cd00331 67 ----------------VREAVSLPVLRKD 79 (217)
T ss_pred ----------------HHHhcCCCEEECC
No 253
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=30.10 E-value=1.9e+02 Score=25.42 Aligned_cols=21 Identities=10% Similarity=0.330 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEe
Q psy13219 86 ALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 86 ~~~~~ll~RAe~AG~~AlvvT 106 (193)
+.+.+++++++++|+.+|.||
T Consensus 151 ~~~~~~~~~l~~aG~d~i~vh 171 (333)
T PRK11815 151 EFLCDFVDTVAEAGCDTFIVH 171 (333)
T ss_pred HHHHHHHHHHHHhCCCEEEEc
Confidence 345567777778888777766
No 254
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=30.01 E-value=1.7e+02 Score=27.51 Aligned_cols=23 Identities=4% Similarity=0.169 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHhcCC-CCEEEecC
Q psy13219 170 SVDWDDVRSLVQATK-LPIVCKGI 192 (193)
Q Consensus 170 ~~tW~di~wlr~~~~-lPivlKGI 192 (193)
...|+.|+|||+.|+ ++|+.++|
T Consensus 274 ~~~~~~i~~ik~~~p~~~vi~g~v 297 (505)
T PLN02274 274 IYQLEMIKYIKKTYPELDVIGGNV 297 (505)
T ss_pred HHHHHHHHHHHHhCCCCcEEEecC
Confidence 356899999999995 78888877
No 255
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=29.95 E-value=70 Score=23.12 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=26.3
Q ss_pred EEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecc
Q psy13219 76 WLQMYIFKDRALSLQMVQRAERSGYSAIVITMDT 109 (193)
Q Consensus 76 wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~ 109 (193)
-+=+-..+.-..+.+.+++|++.|++.|.+|=+.
T Consensus 51 vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 51 VIAISNSGETDELLNLLPHLKRRGAPIIAITGNP 84 (128)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3334455566778889999999999999999753
No 256
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=29.86 E-value=53 Score=28.58 Aligned_cols=69 Identities=19% Similarity=0.200 Sum_probs=43.1
Q ss_pred CCchHHHHHHHHHhccCceeeeccCcc----cc-HHHHH-------hhCC-CCceEEEEEeecCHHHHHHHHHHHHHcCC
Q psy13219 34 AHADGEVATARAAGMMDAIMILSLMST----TS-LEEVR-------AQNP-STTLWLQMYIFKDRALSLQMVQRAERSGY 100 (193)
Q Consensus 34 ~~~~gE~~~araA~~~g~~~~lst~ss----~s-~eei~-------~~~~-~~~~wfQlY~~~dr~~~~~ll~RAe~AG~ 100 (193)
.+.+-=.++.+||.+.+.|.+|..... .. ++.+. +... ..|. .+.=|.....+.+++|-++||
T Consensus 26 ~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV----~lHLDHg~~~e~i~~ai~~Gf 101 (286)
T PRK08610 26 NNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPV----AIHLDHGSSFEKCKEAIDAGF 101 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCE----EEECCCCCCHHHHHHHHHcCC
Confidence 344455688999999999999865331 12 34332 2221 1233 334466666788888999999
Q ss_pred cEEEEe
Q psy13219 101 SAIVIT 106 (193)
Q Consensus 101 ~AlvvT 106 (193)
+-+++.
T Consensus 102 tSVM~D 107 (286)
T PRK08610 102 TSVMID 107 (286)
T ss_pred CEEEEe
Confidence 887654
No 257
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=29.80 E-value=1.1e+02 Score=25.70 Aligned_cols=47 Identities=13% Similarity=0.315 Sum_probs=28.2
Q ss_pred HHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCC
Q psy13219 63 LEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGS 114 (193)
Q Consensus 63 ~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~ 114 (193)
+|-|++..+ -.....| |.+|.+ ++++.--.+||++++|-|++.-++.
T Consensus 104 ve~lc~~lG-l~~~~PL-Wg~d~~---ell~e~~~~Gf~~~Iv~Vsa~gL~~ 150 (223)
T COG2102 104 VERLCEELG-LKVYAPL-WGRDPE---ELLEEMVEAGFEAIIVAVSAEGLDE 150 (223)
T ss_pred HHHHHHHhC-CEEeecc-cCCCHH---HHHHHHHHcCCeEEEEEEeccCCCh
Confidence 455555443 1222323 344554 3444545899999999999987654
No 258
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=29.77 E-value=3.2e+02 Score=24.18 Aligned_cols=57 Identities=11% Similarity=0.144 Sum_probs=34.9
Q ss_pred HHHHHHhccCceeeeccCccc-cHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219 41 ATARAAGMMDAIMILSLMSTT-SLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 41 ~~araA~~~g~~~~lst~ss~-s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT 106 (193)
...+.+.+.++++++.++.+- .++.+.++ +...|.++ . +.++.++++++|+.+||+.
T Consensus 73 ~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~--Gi~v~~~v---~----s~~~A~~a~~~GaD~vVaq 130 (320)
T cd04743 73 AQLAVVRAIKPTFALIAGGRPDQARALEAI--GISTYLHV---P----SPGLLKQFLENGARKFIFE 130 (320)
T ss_pred HHHHHHHhcCCcEEEEcCCChHHHHHHHHC--CCEEEEEe---C----CHHHHHHHHHcCCCEEEEe
Confidence 466777778998887666532 24444433 22333333 2 2345578899999999875
No 259
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=29.73 E-value=98 Score=27.14 Aligned_cols=71 Identities=8% Similarity=-0.003 Sum_probs=41.4
Q ss_pred HHHHHHHHhccCce--eeeccCccccHHHHHhhCCCCce-----------EEEEEeecCHHHHHHHHHHHHHcCCcEEEE
Q psy13219 39 EVATARAAGMMDAI--MILSLMSTTSLEEVRAQNPSTTL-----------WLQMYIFKDRALSLQMVQRAERSGYSAIVI 105 (193)
Q Consensus 39 E~~~araA~~~g~~--~~lst~ss~s~eei~~~~~~~~~-----------wfQlY~~~dr~~~~~ll~RAe~AG~~Alvv 105 (193)
+..+.+...+.++. .+++ .+...++++.+..|.... -.+.|-+.-...+.+++++++++|.+..+.
T Consensus 173 ~~~vl~~i~~~~~~~~~v~~-~~~~~l~~~~~~~P~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~v~~~~~~G~~v~vW 251 (315)
T cd08609 173 VFYTLETILKLGIPPDKVWW-LPDEYRHDVMKMEPGFKQVYGRQKEMLMDGGNFMNLPYQDLSALEIKELRKDNVSVNLW 251 (315)
T ss_pred HHHHHHHHHHcCCCcceEEE-eCHHHHHHHHHhCcCceeecccchhhHhcCCeEEecccccCCHHHHHHHHHCCCEEEEE
Confidence 45566667776643 2222 233456666554332110 011122333446678999999999999999
Q ss_pred eeccC
Q psy13219 106 TMDTA 110 (193)
Q Consensus 106 TVD~p 110 (193)
|||.+
T Consensus 252 TVNd~ 256 (315)
T cd08609 252 VVNEP 256 (315)
T ss_pred CCCCH
Confidence 99976
No 260
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=29.48 E-value=2e+02 Score=27.42 Aligned_cols=68 Identities=15% Similarity=0.077 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhccCceeeec---cCccccHHHHHhhCCCC-ceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEee
Q psy13219 37 DGEVATARAAGMMDAIMILS---LMSTTSLEEVRAQNPST-TLWLQMYIFKDRALSLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 37 ~gE~~~araA~~~g~~~~ls---t~ss~s~eei~~~~~~~-~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTV 107 (193)
.|..++|+|+.++|+-++-+ |=+|.=+|.+++..+++ ....|. .|+....++.-=|-.+|.++++.|=
T Consensus 6 ~GneA~A~g~~~ag~~~~~~YPiTP~t~i~e~l~~~~~~~~~~~~~~---~~E~~a~~~~~GAs~aG~ra~t~ts 77 (595)
T TIGR03336 6 LGNEAIARGALEAGVGVAAAYPGTPSSEITDTLAKVAKRAGVYFEWS---VNEKVAVEVAAGAAWSGLRAFCTMK 77 (595)
T ss_pred cHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHhhhhccEEEEEC---cCHHHHHHHHHHHHhcCcceEEEcc
Confidence 68999999999999887654 33444455555544433 223222 3666666777777788999988775
No 261
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=29.39 E-value=52 Score=28.97 Aligned_cols=24 Identities=21% Similarity=0.613 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHhcCCCCEEEec
Q psy13219 168 DDSVDWDDVRSLVQATKLPIVCKG 191 (193)
Q Consensus 168 ~~~~tW~di~wlr~~~~lPivlKG 191 (193)
.|.++|+-|+.|++..+.||||=|
T Consensus 188 ~p~L~f~~L~~I~~~~~iPLVLHG 211 (307)
T PRK05835 188 EPKLDFERLQEVKRLTNIPLVLHG 211 (307)
T ss_pred CCccCHHHHHHHHHHhCCCEEEeC
Confidence 478999999999999999999987
No 262
>PHA01807 hypothetical protein
Probab=29.27 E-value=87 Score=24.40 Aligned_cols=32 Identities=13% Similarity=0.321 Sum_probs=24.5
Q ss_pred EEeecC-------HHHHHHHHHHHHHcCCcEEEEeeccC
Q psy13219 79 MYIFKD-------RALSLQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 79 lY~~~d-------r~~~~~ll~RAe~AG~~AlvvTVD~p 110 (193)
||+.++ +.++..+++.|++.|++.|++||..-
T Consensus 87 lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~ 125 (153)
T PHA01807 87 QYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREG 125 (153)
T ss_pred EEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCC
Confidence 488664 34666777788889999999999863
No 263
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=29.12 E-value=1.7e+02 Score=23.68 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=35.2
Q ss_pred HHHHHHHhccCceeeeccCccccHHHHHhhCCCCce-EEEEEeecCHH----HHHHHHHHHHHcCCcEEEE
Q psy13219 40 VATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTL-WLQMYIFKDRA----LSLQMVQRAERSGYSAIVI 105 (193)
Q Consensus 40 ~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~-wfQlY~~~dr~----~~~~ll~RAe~AG~~Alvv 105 (193)
..+|+++.+.|+.. +|-.+-.-+++|.+.. +-|. +..-+-..+.+ ...+.++.|.++|+..+++
T Consensus 30 ~~~a~~~~~~G~~~-~~~~~~~~~~~i~~~~-~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~ 98 (219)
T cd04729 30 AAMALAAVQGGAVG-IRANGVEDIRAIRARV-DLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIAL 98 (219)
T ss_pred HHHHHHHHHCCCeE-EEcCCHHHHHHHHHhC-CCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEE
Confidence 68999999999975 4433333455565442 2222 11101111101 1235789999999995554
No 264
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=29.04 E-value=3.4e+02 Score=22.64 Aligned_cols=90 Identities=12% Similarity=0.126 Sum_probs=55.2
Q ss_pred eCCceeecchhccccCCchHHHHHHHHHh--ccCce-eeeccCccccHHHHHhhCCCCceEEE-------------EEe-
Q psy13219 19 YRCPVGIAPSAMQKLAHADGEVATARAAG--MMDAI-MILSLMSTTSLEEVRAQNPSTTLWLQ-------------MYI- 81 (193)
Q Consensus 19 ~~~P~~iaP~g~~~l~~~~gE~~~araA~--~~g~~-~~lst~ss~s~eei~~~~~~~~~wfQ-------------lY~- 81 (193)
=.+||++---+..-++=-.|+++..|+.. ++|.- .++|-.-+..++++++. +...|.| +|.
T Consensus 15 ~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~--~~i~~~~r~~~~~dl~g~~LViaA 92 (223)
T PRK05562 15 KYMFISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKY--GNLKLIKGNYDKEFIKDKHLIVIA 92 (223)
T ss_pred CEeeeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhC--CCEEEEeCCCChHHhCCCcEEEEC
Confidence 34677776555555555578888776654 45533 33454445567776543 2244444 444
Q ss_pred ecCHHHHHHHHHHHHHcCCcEEEEeeccCCC
Q psy13219 82 FKDRALSLQMVQRAERSGYSAIVITMDTAVL 112 (193)
Q Consensus 82 ~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~ 112 (193)
-.|+++++.+.+.|++.| .+|..+|.|..
T Consensus 93 TdD~~vN~~I~~~a~~~~--~lvn~vd~p~~ 121 (223)
T PRK05562 93 TDDEKLNNKIRKHCDRLY--KLYIDCSDYKK 121 (223)
T ss_pred CCCHHHHHHHHHHHHHcC--CeEEEcCCccc
Confidence 368888888888888865 46777887643
No 265
>TIGR00035 asp_race aspartate racemase.
Probab=29.02 E-value=60 Score=26.71 Aligned_cols=71 Identities=14% Similarity=0.132 Sum_probs=43.7
Q ss_pred HhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCC
Q psy13219 46 AGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTM 125 (193)
Q Consensus 46 A~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~ 125 (193)
..+..+++++-+ +..+.|..+..-++ .|=. =...+.+.+++.+++|++++++...++..- .++++..+.+
T Consensus 30 ~d~~~~~~i~~~--~~~~~dr~~~~~~~-~~~~-----~~~~l~~~~~~L~~~g~d~iviaCNTah~~--~~~l~~~~~i 99 (229)
T TIGR00035 30 RDQEHPAEVLFN--NPNIPDRTAYILGR-GEDR-----PRPILIDIAVKLENAGADFIIMPCNTAHKF--AEDIQKAIGI 99 (229)
T ss_pred cCCCCCceeeee--CCCHHHHHHHHhcC-Ccch-----HHHHHHHHHHHHHHcCCCEEEECCccHHHH--HHHHHHhCCC
Confidence 334457777743 33565554332111 0101 125667788888999999999999997654 4567777666
Q ss_pred C
Q psy13219 126 P 126 (193)
Q Consensus 126 p 126 (193)
|
T Consensus 100 P 100 (229)
T TIGR00035 100 P 100 (229)
T ss_pred C
Confidence 6
No 266
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=28.96 E-value=1.5e+02 Score=23.38 Aligned_cols=9 Identities=33% Similarity=0.611 Sum_probs=3.8
Q ss_pred ceeeeccCc
Q psy13219 51 AIMILSLMS 59 (193)
Q Consensus 51 ~~~~lst~s 59 (193)
+..++|+.+
T Consensus 110 iiil~sd~~ 118 (183)
T cd01453 110 VLIIFSSLS 118 (183)
T ss_pred EEEEEcCCC
Confidence 444444433
No 267
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=28.90 E-value=97 Score=25.56 Aligned_cols=57 Identities=19% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEE
Q psy13219 39 EVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAI 103 (193)
Q Consensus 39 E~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~Al 103 (193)
+...++.|.++|.-|++|-..+..+-+.+...+ -.|++. -.|-.-+.+|.++|++.+
T Consensus 69 ~~~~a~~a~~aGA~FivsP~~~~~v~~~~~~~~------i~~iPG--~~TptEi~~A~~~Ga~~v 125 (204)
T TIGR01182 69 NPEQLRQAVDAGAQFIVSPGLTPELAKHAQDHG------IPIIPG--VATPSEIMLALELGITAL 125 (204)
T ss_pred CHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcC------CcEECC--CCCHHHHHHHHHCCCCEE
No 268
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=28.82 E-value=1.8e+02 Score=27.07 Aligned_cols=91 Identities=15% Similarity=0.110 Sum_probs=49.1
Q ss_pred CCCCcceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhC---CCCceE-E-EEEe
Q psy13219 7 DRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQN---PSTTLW-L-QMYI 81 (193)
Q Consensus 7 ~~d~~t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~---~~~~~w-f-QlY~ 81 (193)
++|++|+ ++..+..||+-|||-.. .|..+|.+-++.|=.-++- -+.+.++..+.. .-.... - -+.+
T Consensus 32 ~v~~~t~-~~~~l~~Pi~sa~Mdtv------t~~~MAiaLAr~GGiGvih--~nl~~~~q~~~l~~VKv~~iMi~~pvtv 102 (479)
T PRK07807 32 DVDLSTA-DGTGTTIPLVVANMTAV------AGRRMAETVARRGGLVVLP--QDIPIDVVAEVVAWVKSRDLVFDTPVTL 102 (479)
T ss_pred ceecccC-CCCccccceeecCCcch------hHHHHHHHHHHCCCceEee--CCCCHHHHHHHHhhcccccccccCCeEE
Confidence 6688887 58899999999997422 3667777777776333332 233444433321 100000 0 0122
Q ss_pred ecCHHHHHHHHHHHHHcCCcEEEEee
Q psy13219 82 FKDRALSLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 82 ~~dr~~~~~ll~RAe~AG~~AlvvTV 107 (193)
..|. -..+.+++..+.++..++|+-
T Consensus 103 ~~d~-tv~eA~~~m~~~~~s~l~VVD 127 (479)
T PRK07807 103 SPDD-TVGDALALLPKRAHGAVVVVD 127 (479)
T ss_pred CCCC-CHHHHHHHHHhcCCceEEEEC
Confidence 3332 233455555667888887753
No 269
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.81 E-value=1.2e+02 Score=25.12 Aligned_cols=58 Identities=17% Similarity=0.135 Sum_probs=37.3
Q ss_pred HHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEE
Q psy13219 40 VATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVI 105 (193)
Q Consensus 40 ~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~Alvv 105 (193)
..-++.|.++|.-|++|-..+..+-+.+...+ ..|++.= .+..-+.+|.++|++.|-+
T Consensus 78 ~~~~~~a~~aGA~FivsP~~~~~v~~~~~~~~------i~~iPG~--~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 78 AVTARLAILAGAQFIVSPSFNRETAKICNLYQ------IPYLPGC--MTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcC------CCEECCc--CCHHHHHHHHHcCCCEEEE
Confidence 35667777788888887766655555554432 2245542 3445667888899998887
No 270
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=28.80 E-value=3.1e+02 Score=25.51 Aligned_cols=86 Identities=20% Similarity=0.143 Sum_probs=52.0
Q ss_pred ceECCceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhh-------CCCCc-eEEEEEeec
Q psy13219 12 LTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQ-------NPSTT-LWLQMYIFK 83 (193)
Q Consensus 12 t~~lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~-------~~~~~-~wfQlY~~~ 83 (193)
+++||. ..|++-+||+. +.. ...++.|..++|..-.+++.. .++|+|.+. .++++ .-+-|..+.
T Consensus 12 ~~~lgi--ryPiiqgpMa~-GiS----s~eLVaAVs~AGgLG~lgag~-l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~ 83 (444)
T TIGR02814 12 REDYGV--RYAYVAGAMAN-GIA----SAELVIAMGRAGILGFFGAGG-LPLEEVEQAIHRIQQALPGGPAYGVNLIHSP 83 (444)
T ss_pred HHHhCC--CCcEECccccC-CCC----CHHHHHHHHhCCceeeeCCCC-CCHHHHHHHHHHHHHhcCCCCceEEEecccC
Confidence 345554 57999999862 232 346777888888777777654 456655432 33334 444444433
Q ss_pred -CHHHHHHHHHHHHHcCCcEEEE
Q psy13219 84 -DRALSLQMVQRAERSGYSAIVI 105 (193)
Q Consensus 84 -dr~~~~~ll~RAe~AG~~Alvv 105 (193)
|.+...++++-..+.|++.+..
T Consensus 84 ~~~~~e~~~v~l~l~~~V~~vea 106 (444)
T TIGR02814 84 SDPALEWGLVDLLLRHGVRIVEA 106 (444)
T ss_pred CCcccHHHHHHHHHHcCCCEEEe
Confidence 4444456777777889876544
No 271
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=28.80 E-value=1e+02 Score=29.68 Aligned_cols=44 Identities=27% Similarity=0.401 Sum_probs=38.0
Q ss_pred eEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhh
Q psy13219 75 LWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120 (193)
Q Consensus 75 ~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r 120 (193)
.|.-.|+.-+++.+.++++.|++-|+.-. -+|--..|.|..|.+
T Consensus 298 sWea~Yfd~t~e~ile~vk~akk~gvE~F--vlDDGwfg~rndd~~ 341 (687)
T COG3345 298 SWEAYYFDFTEEEILENVKEAKKFGVELF--VLDDGWFGGRNDDLK 341 (687)
T ss_pred ceeeeeecCCHHHHHHHHHHHhhcCeEEE--EEccccccccCcchh
Confidence 39999999999999999999999997543 357778999999986
No 272
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=28.66 E-value=1.2e+02 Score=27.02 Aligned_cols=91 Identities=18% Similarity=0.228 Sum_probs=60.5
Q ss_pred eeCCceeecchhccccCCchHHHHH-HHHHh-ccCceeeeccCc-cccHHHHHhhCC----CCceEEEEEeecCHHHHHH
Q psy13219 18 RYRCPVGIAPSAMQKLAHADGEVAT-ARAAG-MMDAIMILSLMS-TTSLEEVRAQNP----STTLWLQMYIFKDRALSLQ 90 (193)
Q Consensus 18 ~~~~P~~iaP~g~~~l~~~~gE~~~-araA~-~~g~~~~lst~s-s~s~eei~~~~~----~~~~wfQlY~~~dr~~~~~ 90 (193)
-+..||.| |+++ +|+-+..+ .+||. +.|=...|+|.+ ....|.|++++- ....|-|+-++--+.+++.
T Consensus 197 AVdvPiii---GGSG--npeKDpeVlekaAEvaEGeRclLaSanldlDy~~ia~AA~ky~H~VLswt~~D~N~qk~LNrk 271 (403)
T COG2069 197 AVDVPIII---GGSG--NPEKDPEVLEKAAEVAEGERCLLASANLDLDYERIAEAALKYDHVVLSWTQMDVNMQKTLNRK 271 (403)
T ss_pred hcCcCEEe---cCCC--CCccCHHHHHHHHHhhcCceEEeeccccccCHHHHHHHHHhcCceEEEeeccChHHHHHHHHH
Confidence 46789888 4443 67766443 33333 247777776654 567788887752 2345999999888999999
Q ss_pred HHHHHHHcCCcEEEEeeccCCCCCc
Q psy13219 91 MVQRAERSGYSAIVITMDTAVLGSR 115 (193)
Q Consensus 91 ll~RAe~AG~~AlvvTVD~pv~G~R 115 (193)
|++|. .--.-||+.=-+..+|.-
T Consensus 272 llk~g--l~r~~IVMDPTTcALGYG 294 (403)
T COG2069 272 LLKRG--LPRDRIVMDPTTCALGYG 294 (403)
T ss_pred HHHcc--CChhheeeccchhhhccc
Confidence 99876 444567776666666654
No 273
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=28.61 E-value=91 Score=24.83 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeeccCC
Q psy13219 84 DRALSLQMVQRAERSGYSAIVITMDTAV 111 (193)
Q Consensus 84 dr~~~~~ll~RAe~AG~~AlvvTVD~pv 111 (193)
+.+...+.+++|++-+.++|+|-+|+|-
T Consensus 14 ~~~~l~~~l~~a~~~~~~~vvl~InSpG 41 (187)
T cd07020 14 TADYLERAIDQAEEGGADALIIELDTPG 41 (187)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 3456778888888888999999999995
No 274
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=28.36 E-value=1.7e+02 Score=25.11 Aligned_cols=65 Identities=18% Similarity=0.245 Sum_probs=43.2
Q ss_pred HHHHHHhccCceeeeccCccccHHHHHhh---CCCCceEEEEEeecCHHHHHHHHHHH-HHcCCcEEEEeeccCC
Q psy13219 41 ATARAAGMMDAIMILSLMSTTSLEEVRAQ---NPSTTLWLQMYIFKDRALSLQMVQRA-ERSGYSAIVITMDTAV 111 (193)
Q Consensus 41 ~~araA~~~g~~~~lst~ss~s~eei~~~---~~~~~~wfQlY~~~dr~~~~~ll~RA-e~AG~~AlvvTVD~pv 111 (193)
-+.|.|...-+|+|++- +-.|+||+... +.+ -+.++..-=..-+||.++ ++-|..++|+.+|+-.
T Consensus 65 vv~r~A~~vfiPltVGG-GI~s~eD~~~ll~aGAD-----KVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr 133 (256)
T COG0107 65 VVERVAEQVFIPLTVGG-GIRSVEDARKLLRAGAD-----KVSINSAAVKDPELITEAADRFGSQCIVVAIDAKR 133 (256)
T ss_pred HHHHHHhhceeeeEecC-CcCCHHHHHHHHHcCCC-----eeeeChhHhcChHHHHHHHHHhCCceEEEEEEeee
Confidence 46788888999999974 45788887654 222 123333222223577776 4579999999999854
No 275
>PRK06852 aldolase; Validated
Probab=28.22 E-value=2e+02 Score=25.25 Aligned_cols=67 Identities=15% Similarity=-0.004 Sum_probs=34.0
Q ss_pred HHHHHHHhccCceeeeccC-------ccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHH-cCCcEEEEe
Q psy13219 40 VATARAAGMMDAIMILSLM-------STTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAER-SGYSAIVIT 106 (193)
Q Consensus 40 ~~~araA~~~g~~~~lst~-------ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~-AG~~AlvvT 106 (193)
...+|.|++.|.=++=-.+ ...++++|.+.++..+.-+.==...+.+...++++.|-+ +|+..+++-
T Consensus 191 a~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~G 265 (304)
T PRK06852 191 AGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATG 265 (304)
T ss_pred HHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeec
Confidence 3556777777733332222 235677777665222222211112234445566777755 888876653
No 276
>PRK03972 ribosomal biogenesis protein; Validated
Probab=28.19 E-value=1.1e+02 Score=25.50 Aligned_cols=39 Identities=15% Similarity=0.372 Sum_probs=30.3
Q ss_pred HHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219 63 LEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 63 ~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT 106 (193)
+.|+....|+. .|+++..--.+++++.|.+-||+.|+|=
T Consensus 18 ~keL~~v~Pns-----~~i~RGk~~lkel~~~A~~~g~TdLIVV 56 (208)
T PRK03972 18 GHDLERVFPNS-----LYLTRGKKTIQDLLMEAYDRGYERLLII 56 (208)
T ss_pred HHHHHHhCCCC-----EEEecCCccHHHHHHHHHHCCCCeEEEE
Confidence 35666666753 2778888889999999999999998763
No 277
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=28.03 E-value=1.9e+02 Score=26.04 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=46.9
Q ss_pred hHHHHHHHHHhccCceeeec---cCccccHHHHHhhCC-CCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219 37 DGEVATARAAGMMDAIMILS---LMSTTSLEEVRAQNP-STTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 37 ~gE~~~araA~~~g~~~~ls---t~ss~s~eei~~~~~-~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT 106 (193)
.|..|+|+||..+|.-++.+ |=+|.=+|.+++..+ -+..++|. .|.-....++-=|-.+|.+|+.-|
T Consensus 7 ~GNeAiA~ga~~ag~~~~a~YPITPsTeI~e~la~~~~~~g~~~vq~---E~E~aA~~~a~GAs~aG~Ra~taT 77 (375)
T PRK09627 7 TGNELVAKAAIECGCRFFGGYPITPSSEIAHEMSVLLPKCGGTFIQM---EDEISGISVALGASMSGVKSMTAS 77 (375)
T ss_pred chHHHHHHHHHHhCCCEEEEeCCCChhHHHHHHHHHHHHcCCEEEEc---CCHHHHHHHHHHHHhhCCCEEeec
Confidence 68999999999999887765 445555566665433 12344544 366556677777788999998877
No 278
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=27.95 E-value=1.2e+02 Score=22.32 Aligned_cols=60 Identities=7% Similarity=0.028 Sum_probs=35.4
Q ss_pred cCceeeeccCccccHHHHHhhCCCCc-eEEEEEeecC--HHHHHHHHHHHHHcCCcEEEEeec
Q psy13219 49 MDAIMILSLMSTTSLEEVRAQNPSTT-LWLQMYIFKD--RALSLQMVQRAERSGYSAIVITMD 108 (193)
Q Consensus 49 ~g~~~~lst~ss~s~eei~~~~~~~~-~wfQlY~~~d--r~~~~~ll~RAe~AG~~AlvvTVD 108 (193)
.|+--.++..+..-..|+..-..++- ..--.|..++ .+...+++++..++|+.||++-++
T Consensus 19 ~gL~r~V~~v~v~e~~d~~~~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~ 81 (123)
T PF07905_consen 19 NGLDRPVRWVHVMEAPDPSDWLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTG 81 (123)
T ss_pred ccCCCcEEEEEEeecCCHHHhCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEecc
Confidence 34444444444444444544332222 2223344444 556899999999999999999765
No 279
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.89 E-value=99 Score=25.45 Aligned_cols=59 Identities=15% Similarity=0.097 Sum_probs=37.4
Q ss_pred HHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219 40 VATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 40 ~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT 106 (193)
...++.|.++|.-|++|-.-+..+=+.+.... -.|++. -.|-.-+..|.++|++.+=+-
T Consensus 66 ~e~a~~ai~aGA~FivSP~~~~~vi~~a~~~~------i~~iPG--~~TptEi~~A~~~Ga~~vK~F 124 (201)
T PRK06015 66 AKQFEDAAKAGSRFIVSPGTTQELLAAANDSD------VPLLPG--AATPSEVMALREEGYTVLKFF 124 (201)
T ss_pred HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcC------CCEeCC--CCCHHHHHHHHHCCCCEEEEC
Confidence 45677788888888887766555555554432 124444 334456777888998876553
No 280
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=27.52 E-value=59 Score=28.22 Aligned_cols=24 Identities=25% Similarity=0.594 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHhcCCCCEEEec
Q psy13219 168 DDSVDWDDVRSLVQATKLPIVCKG 191 (193)
Q Consensus 168 ~~~~tW~di~wlr~~~~lPivlKG 191 (193)
.|.++|+-|+.|++..+.||||=|
T Consensus 186 ~p~Ld~~~L~~I~~~~~vPLVLHG 209 (284)
T PRK09195 186 EPKLDFDRLENIRQWVNIPLVLHG 209 (284)
T ss_pred CCcCCHHHHHHHHHHhCCCeEEec
Confidence 578999999999999999999987
No 281
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=27.49 E-value=1.4e+02 Score=26.39 Aligned_cols=37 Identities=14% Similarity=0.058 Sum_probs=27.6
Q ss_pred CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecc
Q psy13219 73 TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDT 109 (193)
Q Consensus 73 ~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~ 109 (193)
-|.+.=|-..-+.+...++.+.++++|+.+|+++=-+
T Consensus 212 ~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 212 VPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 4666666544455568889999999999999987544
No 282
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=27.41 E-value=1.4e+02 Score=26.02 Aligned_cols=35 Identities=14% Similarity=0.056 Sum_probs=27.0
Q ss_pred CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEee
Q psy13219 73 TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 73 ~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTV 107 (193)
-+.+.-|-..-+.+...++.+.++++|+.+|.++=
T Consensus 203 ~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n 237 (327)
T cd04738 203 VPLLVKIAPDLSDEELEDIADVALEHGVDGIIATN 237 (327)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEC
Confidence 46777775545556678899999999999998874
No 283
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=27.02 E-value=1.2e+02 Score=24.52 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcC
Q psy13219 87 LSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNK 122 (193)
Q Consensus 87 ~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~ 122 (193)
..+-.|++|++.|.+-++||+|.--...|.-=+.||
T Consensus 118 mLkl~L~~ar~lgi~~Vlvtcd~dN~ASrkvI~~NG 153 (174)
T COG3981 118 MLKLALEKARELGIKKVLVTCDKDNIASRKVIEANG 153 (174)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCCchhhHHHHhcC
Confidence 445557889999999999999987666665444444
No 284
>TIGR03555 F420_mer 5,10-methylenetetrahydromethanopterin reductase. Members of this protein family are 5,10-methylenetetrahydromethanopterin reductase, an F420-dependent enzyme of methanogenesis. It is restricted to the Archaea.
Probab=27.00 E-value=87 Score=27.13 Aligned_cols=25 Identities=24% Similarity=0.135 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeec
Q psy13219 84 DRALSLQMVQRAERSGYSAIVITMD 108 (193)
Q Consensus 84 dr~~~~~ll~RAe~AG~~AlvvTVD 108 (193)
.-+...++.++||++||..+++.=.
T Consensus 10 ~~~~~~~~a~~AE~~Gfd~~w~~eh 34 (325)
T TIGR03555 10 PITKIAYYVKLAEDNGFEYAWITDH 34 (325)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccc
Confidence 3467778999999999999987743
No 285
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=26.97 E-value=79 Score=28.38 Aligned_cols=35 Identities=11% Similarity=0.258 Sum_probs=21.1
Q ss_pred EEEEeecC-HHHHHHHHHHHHHcCCcEEEEeeccCC
Q psy13219 77 LQMYIFKD-RALSLQMVQRAERSGYSAIVITMDTAV 111 (193)
Q Consensus 77 fQlY~~~d-r~~~~~ll~RAe~AG~~AlvvTVD~pv 111 (193)
|=+|+..+ .+..++.|++|.++||+-|+..+-.|-
T Consensus 4 iSvY~~~~~~~~~~~yi~~a~~~Gf~~iFTSL~ipe 39 (357)
T PF05913_consen 4 ISVYPGQSSFEENKAYIEKAAKYGFKRIFTSLHIPE 39 (357)
T ss_dssp EEE-CCCS-HHHHHHHHHHHHCTTEEEEEEEE----
T ss_pred EEEeCCCCCHHHHHHHHHHHHHCCCCEEECCCCcCC
Confidence 44666665 566677777777777777777776664
No 286
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=26.95 E-value=1.6e+02 Score=25.62 Aligned_cols=24 Identities=21% Similarity=0.513 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHhcCCCCEEEec
Q psy13219 168 DDSVDWDDVRSLVQATKLPIVCKG 191 (193)
Q Consensus 168 ~~~~tW~di~wlr~~~~lPivlKG 191 (193)
.|.++|+-|+.|++..+.||||=|
T Consensus 187 ~p~Ld~~~L~~I~~~~~vPLVLHG 210 (286)
T PRK08610 187 EPKLGFKEMEEIGLSTGLPLVLHG 210 (286)
T ss_pred CCCCCHHHHHHHHHHHCCCEEEeC
Confidence 588999999999999999999987
No 287
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=26.83 E-value=1.1e+02 Score=22.57 Aligned_cols=25 Identities=8% Similarity=0.251 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEeeccC
Q psy13219 86 ALSLQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 86 ~~~~~ll~RAe~AG~~AlvvTVD~p 110 (193)
++...+++.|++.|++.|.+++...
T Consensus 105 ~ll~~~~~~a~~~g~~~i~l~~~~~ 129 (150)
T PLN02706 105 KIIEALTEHARSAGCYKVILDCSEE 129 (150)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccc
Confidence 4667788888889999999999843
No 288
>PF05268 GP38: Phage tail fibre adhesin Gp38; InterPro: IPR007932 This entry is represented by Bacteriophage T2, Gp38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains several Gp38 proteins from T-even-like phages. Gp38, together with a second phage protein, Gp57, catalyses the organisation of Gp37 but is absent from the phage particle. Gp37 is responsible for receptor recognition [].
Probab=26.70 E-value=26 Score=29.63 Aligned_cols=63 Identities=19% Similarity=0.209 Sum_probs=42.7
Q ss_pred chHHH--HHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHH-HHHHHHHHHcCCcEEEEeeccC
Q psy13219 36 ADGEV--ATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALS-LQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 36 ~~gE~--~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~-~~ll~RAe~AG~~AlvvTVD~p 110 (193)
.-|++ .-|+.+-+.++|+++|.+.-.|.|-+..... |.... ..+++|++++|-.-||+|+---
T Consensus 17 eTGqrwM~aA~~~lrl~~P~wMsqm~GrS~ei~~tiGA------------~hn~n~~~~~~~~~~~GsaPiV~~ITG~ 82 (260)
T PF05268_consen 17 ETGQRWMSAAMRALRLGVPFWMSQMAGRSKEIIHTIGA------------DHNFNGQWFRDRCFEAGSAPIVFNITGN 82 (260)
T ss_pred hccchhHHHHHhhhccCCchHHHHhhccceeEEEeccc------------CcccchhHHHHHHHHcCCCCEEEEeccc
Confidence 33554 4455566789999999999998884332222 11222 2478899999999999998643
No 289
>TIGR00186 rRNA_methyl_3 rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases
Probab=26.67 E-value=1.7e+02 Score=24.35 Aligned_cols=59 Identities=10% Similarity=0.104 Sum_probs=38.4
Q ss_pred CceeeeccCccccHHHHHhhCC--CCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeec
Q psy13219 50 DAIMILSLMSTTSLEEVRAQNP--STTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMD 108 (193)
Q Consensus 50 g~~~~lst~ss~s~eei~~~~~--~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD 108 (193)
|+...+......+++++.+..+ ..+.++=|+=..|+.-.-.++|-|...|++.|+++=+
T Consensus 64 Gv~a~~~~~~~~~~~~~~~~~~~~~~~~~lvLd~v~dp~NlGaI~Rta~afG~~~vil~~~ 124 (237)
T TIGR00186 64 GIAAKVKPILYKDLNDLYKTAKSKKQPFLLILDEITDPHNLGAILRTAEAFGVDGVILPKR 124 (237)
T ss_pred eEEEEEecCCCCCHHHHHHhhhccCCCEEEEEcCCCCCccHHHHHHHHHHcCCCEEEECCC
Confidence 4444444444456777754322 1233444444678888889999999999999987643
No 290
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=26.56 E-value=1.9e+02 Score=24.63 Aligned_cols=28 Identities=11% Similarity=0.259 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeeccCCC
Q psy13219 84 DRALSLQMVQRAERSGYSAIVITMDTAVL 112 (193)
Q Consensus 84 dr~~~~~ll~RAe~AG~~AlvvTVD~pv~ 112 (193)
|+.. .+++++|.++|++.+++++..-.-
T Consensus 191 Dp~f-a~~l~~A~~~GVev~~~~~~~~~~ 218 (235)
T COG1489 191 DPKF-AELLREAIKAGVEVLAYRFEVDGE 218 (235)
T ss_pred CHHH-HHHHHHHHHcCCEEEEEEEEEccc
Confidence 5554 468899999999999999886543
No 291
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=26.51 E-value=4e+02 Score=22.55 Aligned_cols=90 Identities=12% Similarity=0.032 Sum_probs=56.9
Q ss_pred hccccCCchHHHHHHHHHhccCceeeeccCccccHHHH---HhhCCCCceEEEE----------EeecCHHHHHHHHHHH
Q psy13219 29 AMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEV---RAQNPSTTLWLQM----------YIFKDRALSLQMVQRA 95 (193)
Q Consensus 29 g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei---~~~~~~~~~wfQl----------Y~~~dr~~~~~ll~RA 95 (193)
|+--+.+++.-..++++|++.|+..++-|.+..+-+.+ .+.. + ...+=| +...+.+.+.+-++.+
T Consensus 91 GGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~~~~~~l~~~~-D-~v~~DlK~~~~~~y~~~tg~~~~~vl~~~~~l 168 (260)
T COG1180 91 GGEPTLQAEFALDLLRAAKERGLHVALDTNGFLPPEALEELLPLL-D-AVLLDLKAFDDELYRKLTGADNEPVLENLELL 168 (260)
T ss_pred CCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHhhc-C-eEEEeeccCChHHHHHHhCCCcHHHHHHHHHH
Confidence 34444566666899999999999999999887665443 3332 1 122333 2233335566677777
Q ss_pred HHcCCcEEEEeeccCCCCCchhhhh
Q psy13219 96 ERSGYSAIVITMDTAVLGSRYRDLK 120 (193)
Q Consensus 96 e~AG~~AlvvTVD~pv~G~Re~d~r 120 (193)
.+.|...-+-|+=.|-....+.|++
T Consensus 169 ~~~g~~ve~r~lviPg~~d~~e~i~ 193 (260)
T COG1180 169 ADLGVHVEIRTLVIPGYNDDEEEIR 193 (260)
T ss_pred HcCCCeEEEEEEEECCCCCCHHHHH
Confidence 7788877776766665545555554
No 292
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=26.49 E-value=53 Score=28.96 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCCcEEEE----------eeccCC
Q psy13219 88 SLQMVQRAERSGYSAIVI----------TMDTAV 111 (193)
Q Consensus 88 ~~~ll~RAe~AG~~Alvv----------TVD~pv 111 (193)
..++++|++++|.+..++ |+|.|.
T Consensus 253 ~~~f~~~~~~~g~~V~~~~~~~~~~~~~~~d~~~ 286 (309)
T cd08613 253 PNRFLARMEAAGTRVILVGPYTGGEFSEGFDTPE 286 (309)
T ss_pred CHHHHHHHHHcCCeEEEEecccCCcccCCCCCHH
Confidence 457999999999999999 888873
No 293
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=26.40 E-value=4e+02 Score=22.56 Aligned_cols=82 Identities=12% Similarity=0.004 Sum_probs=48.8
Q ss_pred ceeecchhccccCCchHHHHHHHHHhccCcee--eeccCc---cccHHHH-------HhhCCCCceEEEEEeecCHHHHH
Q psy13219 22 PVGIAPSAMQKLAHADGEVATARAAGMMDAIM--ILSLMS---TTSLEEV-------RAQNPSTTLWLQMYIFKDRALSL 89 (193)
Q Consensus 22 P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~--~lst~s---s~s~eei-------~~~~~~~~~wfQlY~~~dr~~~~ 89 (193)
|-++.|+-- +-.+.++=..+++-..+.|+-- +.+|.+ +.|.||- .+.. +. ..+++- ..+-+.+.
T Consensus 6 ~a~~TPf~~-g~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~-~~-vi~gvg-~~~~~~ai 81 (279)
T cd00953 6 TPVITPFTG-NKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT-DK-VIFQVG-SLNLEESI 81 (279)
T ss_pred cceecCcCC-CCcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc-CC-EEEEeC-cCCHHHHH
Confidence 334567643 4445555556666666666543 344433 3444432 2333 22 455543 24567788
Q ss_pred HHHHHHHHcCCcEEEEee
Q psy13219 90 QMVQRAERSGYSAIVITM 107 (193)
Q Consensus 90 ~ll~RAe~AG~~AlvvTV 107 (193)
++.+.|+++|+.+++++.
T Consensus 82 ~~a~~a~~~Gad~v~v~~ 99 (279)
T cd00953 82 ELARAAKSFGIYAIASLP 99 (279)
T ss_pred HHHHHHHHcCCCEEEEeC
Confidence 899999999999999876
No 294
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=26.37 E-value=2.2e+02 Score=22.12 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=28.8
Q ss_pred CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeec
Q psy13219 73 TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMD 108 (193)
Q Consensus 73 ~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD 108 (193)
+...+=+-..+.-..+.+.++.|++.|++.|.||=.
T Consensus 102 ~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~ 137 (177)
T cd05006 102 GDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGR 137 (177)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 345665666677778889999999999999999954
No 295
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=26.21 E-value=67 Score=26.86 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEeeccC
Q psy13219 86 ALSLQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 86 ~~~~~ll~RAe~AG~~AlvvTVD~p 110 (193)
+..++++++|.+.|++.|.+|==.|
T Consensus 15 ~~~ee~v~~A~~~Gl~~i~~TdH~p 39 (253)
T TIGR01856 15 DTLEEVVQEAIQLGFEEICFTEHAP 39 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCC
Confidence 4578999999999999999997766
No 296
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=26.20 E-value=68 Score=27.85 Aligned_cols=24 Identities=17% Similarity=0.563 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHhcCCCCEEEec
Q psy13219 168 DDSVDWDDVRSLVQATKLPIVCKG 191 (193)
Q Consensus 168 ~~~~tW~di~wlr~~~~lPivlKG 191 (193)
.|.++|+-|+.|++.++.|+|+=|
T Consensus 186 ~p~Ld~~~L~~I~~~~~iPLVlHG 209 (284)
T PRK12737 186 EPKLDFERLAEIREKVSIPLVLHG 209 (284)
T ss_pred CCcCCHHHHHHHHHHhCCCEEEeC
Confidence 578999999999999999999987
No 297
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=26.05 E-value=4.8e+02 Score=23.39 Aligned_cols=72 Identities=17% Similarity=0.115 Sum_probs=42.6
Q ss_pred HHHHHHHhccCceee-----eccCccccHHHHHhh--------C--CCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEE
Q psy13219 40 VATARAAGMMDAIMI-----LSLMSTTSLEEVRAQ--------N--PSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIV 104 (193)
Q Consensus 40 ~~~araA~~~g~~~~-----lst~ss~s~eei~~~--------~--~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~Alv 104 (193)
..++..+...|+-++ ++++...+.||=.++ . .+....|=.=+..+.+.+.+..++|+++|+.+++
T Consensus 144 a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nita~~~em~~ra~~a~~~Ga~~vM 223 (364)
T cd08210 144 AELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNVTGPPTQLLERARFAKEAGAGGVL 223 (364)
T ss_pred HHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecCCCHHHHHHHHHHHHHcCCCEEE
Confidence 455666777887776 556666666543211 1 1233333223345666677777778889998877
Q ss_pred EeeccCCCC
Q psy13219 105 ITMDTAVLG 113 (193)
Q Consensus 105 vTVD~pv~G 113 (193)
|..- ..|
T Consensus 224 v~~~--~~G 230 (364)
T cd08210 224 IAPG--LTG 230 (364)
T ss_pred eecc--cch
Confidence 6554 445
No 298
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=26.02 E-value=4.3e+02 Score=23.03 Aligned_cols=33 Identities=9% Similarity=0.111 Sum_probs=23.0
Q ss_pred CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEee
Q psy13219 73 TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 73 ~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTV 107 (193)
-|.+.=|- .+-....++++.++++|+.+|+++=
T Consensus 164 iPv~vKl~--p~~~~~~~~a~~l~~~Gadgi~~~n 196 (325)
T cd04739 164 IPVAVKLS--PFFSALAHMAKQLDAAGADGLVLFN 196 (325)
T ss_pred CCEEEEcC--CCccCHHHHHHHHHHcCCCeEEEEc
Confidence 45555443 3334567888999999999998843
No 299
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=25.91 E-value=1.4e+02 Score=26.48 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=42.0
Q ss_pred CchHHHHHHHHHhccCceeeeccCcc----cc---HHHHH-------hhCC-CCceEEEEEeecCHHHHHHHHHHHHHcC
Q psy13219 35 HADGEVATARAAGMMDAIMILSLMST----TS---LEEVR-------AQNP-STTLWLQMYIFKDRALSLQMVQRAERSG 99 (193)
Q Consensus 35 ~~~gE~~~araA~~~g~~~~lst~ss----~s---~eei~-------~~~~-~~~~wfQlY~~~dr~~~~~ll~RAe~AG 99 (193)
+.+-=.++.+||.+.+.|.++...-+ .. ++.++ +... ..|..++| |.....+.+++|-++|
T Consensus 33 n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~VPV~lHL----DHg~~~e~i~~ai~~G 108 (321)
T PRK07084 33 NMEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGCPIPIVLHL----DHGDSFELCKDCIDSG 108 (321)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCCCcEEEEC----CCCCCHHHHHHHHHcC
Confidence 44445788899999999999865321 12 33332 1111 23434333 6666677889999999
Q ss_pred CcEEEEe
Q psy13219 100 YSAIVIT 106 (193)
Q Consensus 100 ~~AlvvT 106 (193)
|+.+++.
T Consensus 109 ftSVMiD 115 (321)
T PRK07084 109 FSSVMID 115 (321)
T ss_pred CCEEEee
Confidence 9887654
No 300
>TIGR00186 rRNA_methyl_3 rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases
Probab=25.81 E-value=1.8e+02 Score=24.21 Aligned_cols=77 Identities=10% Similarity=0.172 Sum_probs=45.7
Q ss_pred ccccCCchHHHHHHHHHhccCceeeecc-CccccH-HHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEee
Q psy13219 30 MQKLAHADGEVATARAAGMMDAIMILSL-MSTTSL-EEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 30 ~~~l~~~~gE~~~araA~~~g~~~~lst-~ss~s~-eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTV 107 (193)
+.++-+|.-=-++.|.|..+|+-.++=+ ....+. ..+..++-+...|..++...|- .+.++..++.||.-+..+.
T Consensus 95 Ld~v~dp~NlGaI~Rta~afG~~~vil~~~~~~~~~~~~~r~s~Ga~~~l~~~~~~~~---~~~l~~l~~~g~~i~~~~~ 171 (237)
T TIGR00186 95 LDEITDPHNLGAILRTAEAFGVDGVILPKRRSAPLNSTVVKTSSGAVEYVPLARVTNL---SRTITKLKESGFWTVGTDL 171 (237)
T ss_pred EcCCCCCccHHHHHHHHHHcCCCEEEECCCCcCCCCCceeeeeccccceeEEEEeCCH---HHHHHHHHHCCCEEEEEec
Confidence 3444444333478899999998777633 332333 3343343345667777665544 3567777889997666655
Q ss_pred cc
Q psy13219 108 DT 109 (193)
Q Consensus 108 D~ 109 (193)
+.
T Consensus 172 ~~ 173 (237)
T TIGR00186 172 DA 173 (237)
T ss_pred CC
Confidence 43
No 301
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=25.80 E-value=66 Score=26.35 Aligned_cols=58 Identities=9% Similarity=-0.020 Sum_probs=40.9
Q ss_pred HHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEE
Q psy13219 40 VATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVI 105 (193)
Q Consensus 40 ~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~Alvv 105 (193)
..-++.|.++|.-|++|...+..+.+.+...+ -+ |.+. -.+.+-+.+|.++|++-+.+
T Consensus 73 ~~~~~~a~~aGA~fivsp~~~~~v~~~~~~~~-~~-----~~~G--~~t~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 73 PEQVDRLADAGGRLIVTPNTDPEVIRRAVALG-MV-----VMPG--VATPTEAFAALRAGAQALKL 130 (206)
T ss_pred HHHHHHHHHcCCCEEECCCCCHHHHHHHHHCC-Cc-----EEcc--cCCHHHHHHHHHcCCCEEEE
Confidence 34678888889999999888887777766533 12 3333 23344578889999999886
No 302
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=25.80 E-value=1.7e+02 Score=24.47 Aligned_cols=38 Identities=8% Similarity=0.128 Sum_probs=27.4
Q ss_pred ccCCchHHHHHHHHHhccCceeeeccCc--cccHHHHHhh
Q psy13219 32 KLAHADGEVATARAAGMMDAIMILSLMS--TTSLEEVRAQ 69 (193)
Q Consensus 32 ~l~~~~gE~~~araA~~~g~~~~lst~s--s~s~eei~~~ 69 (193)
-+.+|+.-...++.|.++|+++++++.+ ...++++.++
T Consensus 66 d~t~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~a 105 (257)
T PRK00048 66 DFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEA 105 (257)
T ss_pred ECCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH
Confidence 3457788889999999999999998754 2234445544
No 303
>PRK13936 phosphoheptose isomerase; Provisional
Probab=25.76 E-value=2.4e+02 Score=22.68 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=27.1
Q ss_pred CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeec
Q psy13219 73 TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMD 108 (193)
Q Consensus 73 ~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD 108 (193)
+...+=+-....-..+.++++.|++.|++.|.+|=.
T Consensus 112 ~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~ 147 (197)
T PRK13936 112 GDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGR 147 (197)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECC
Confidence 334444555666677888999999999999999953
No 304
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=25.33 E-value=1.3e+02 Score=25.75 Aligned_cols=34 Identities=18% Similarity=0.391 Sum_probs=28.4
Q ss_pred ceEEEEEeecCHHH----HHHHHHHHHHcCCcEEEEee
Q psy13219 74 TLWLQMYIFKDRAL----SLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 74 ~~wfQlY~~~dr~~----~~~ll~RAe~AG~~AlvvTV 107 (193)
..||++|...-|+. ..+..+++|+.|+--|+||.
T Consensus 139 ~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLts 176 (256)
T COG0107 139 NGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTS 176 (256)
T ss_pred CCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEee
Confidence 55999999887764 45788999999999999985
No 305
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=25.23 E-value=2.8e+02 Score=23.75 Aligned_cols=74 Identities=15% Similarity=0.070 Sum_probs=43.3
Q ss_pred HHHHHHHHHhccCceeeeccCc-------cccHHHHH-------hhC-CCCceEEEEEee-------cCHHHHHHHHHHH
Q psy13219 38 GEVATARAAGMMDAIMILSLMS-------TTSLEEVR-------AQN-PSTTLWLQMYIF-------KDRALSLQMVQRA 95 (193)
Q Consensus 38 gE~~~araA~~~g~~~~lst~s-------s~s~eei~-------~~~-~~~~~wfQlY~~-------~dr~~~~~ll~RA 95 (193)
..+..|..|+...+.+.+|+.- ..+.||+. +.. ..+ .-.++|+. -|.+...++++++
T Consensus 78 ~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G-~~v~~~~~d~~~~~r~~~~~~~~~~~~~ 156 (280)
T cd07945 78 KSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNG-IEVNIYLEDWSNGMRDSPDYVFQLVDFL 156 (280)
T ss_pred HHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCC-CEEEEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 3455555565556666665421 23444442 111 112 23566665 2789999999999
Q ss_pred HHcCCcEEEEeeccCCCC
Q psy13219 96 ERSGYSAIVITMDTAVLG 113 (193)
Q Consensus 96 e~AG~~AlvvTVD~pv~G 113 (193)
.++|++.|.+ .|+--..
T Consensus 157 ~~~G~~~i~l-~DT~G~~ 173 (280)
T cd07945 157 SDLPIKRIML-PDTLGIL 173 (280)
T ss_pred HHcCCCEEEe-cCCCCCC
Confidence 9999986444 5775443
No 306
>PRK07328 histidinol-phosphatase; Provisional
Probab=25.20 E-value=75 Score=26.76 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEeeccCC
Q psy13219 86 ALSLQMVQRAERSGYSAIVITMDTAV 111 (193)
Q Consensus 86 ~~~~~ll~RAe~AG~~AlvvTVD~pv 111 (193)
...++++++|.+.|++.|++|==.|.
T Consensus 18 ~~~ee~v~~A~~~Gl~~i~~TdH~~~ 43 (269)
T PRK07328 18 GTPEEYVQAARRAGLKEIGFTDHLPM 43 (269)
T ss_pred CCHHHHHHHHHHCCCCEEEEecCCCC
Confidence 34789999999999999999976664
No 307
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=25.14 E-value=2.5e+02 Score=25.10 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeeccCCCC
Q psy13219 84 DRALSLQMVQRAERSGYSAIVITMDTAVLG 113 (193)
Q Consensus 84 dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G 113 (193)
|.+...+++++++++|+..|.+ .|+.-..
T Consensus 195 ~~~~l~~~~~~~~~~Gad~I~l-~DT~G~a 223 (347)
T PLN02746 195 PPSKVAYVAKELYDMGCYEISL-GDTIGVG 223 (347)
T ss_pred CHHHHHHHHHHHHHcCCCEEEe-cCCcCCc
Confidence 7788889999999999886444 5765443
No 308
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=25.10 E-value=1.9e+02 Score=21.04 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=29.2
Q ss_pred CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecc
Q psy13219 73 TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDT 109 (193)
Q Consensus 73 ~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~ 109 (193)
+...+=+-....-..+.+.++.|++.|++.+.+|=..
T Consensus 48 ~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (120)
T cd05710 48 KSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDE 84 (120)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCC
Confidence 3455556667777888899999999999999999643
No 309
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=25.09 E-value=1.6e+02 Score=27.87 Aligned_cols=66 Identities=23% Similarity=0.430 Sum_probs=44.2
Q ss_pred ceeecchhccccCCchHHHHHHHHHhccCceeeeccCccc----cHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHH
Q psy13219 22 PVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTT----SLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAER 97 (193)
Q Consensus 22 P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~----s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~ 97 (193)
+|++=|| |..| | +|.+.+.+.|.+.+-..++|-+=+- +-||+ .-| +++-+.- ++.+++
T Consensus 21 ~ig~VPT-MG~L-H-~GHlsLi~~A~~~~d~vVvSIFVNP~QF~~~eD~-----------~~Y-Pr~~~~D---~~~l~~ 82 (512)
T PRK13477 21 TIGFVPT-MGAL-H-QGHLSLIRRARQENDVVLVSIFVNPLQFGPNEDL-----------ERY-PRTLEAD---RELCES 82 (512)
T ss_pred cEEEECC-Ccch-h-HHHHHHHHHHHHhCCEEEEEEccCcccCCCchhh-----------hhC-CCCHHHH---HHHHHh
Confidence 8888897 3334 5 8999999999999888888876542 22333 335 3444433 334578
Q ss_pred cCCcEEEE
Q psy13219 98 SGYSAIVI 105 (193)
Q Consensus 98 AG~~Alvv 105 (193)
+|+..++.
T Consensus 83 ~gvd~vf~ 90 (512)
T PRK13477 83 AGVDAIFA 90 (512)
T ss_pred cCCCEEEC
Confidence 89987765
No 310
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=24.93 E-value=2.2e+02 Score=23.35 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=44.5
Q ss_pred HHHHHHhccC--ceeeeccCccccHHHHHhhCCCCceEE------------------------E-EEee---cC-HHHHH
Q psy13219 41 ATARAAGMMD--AIMILSLMSTTSLEEVRAQNPSTTLWL------------------------Q-MYIF---KD-RALSL 89 (193)
Q Consensus 41 ~~araA~~~g--~~~~lst~ss~s~eei~~~~~~~~~wf------------------------Q-lY~~---~d-r~~~~ 89 (193)
.+.....+.+ -..+++|+....++++.+..|.-...+ + +.++ .+ .-...
T Consensus 123 ~~~~~l~~~~~~~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (249)
T cd08561 123 ALADLIERYGAQDRVLVASFSDRVLRRFRRLCPRVATSAGEGEVAAFVLASRLGLGSLYSPPYDALQIPVRYGGVPLVTP 202 (249)
T ss_pred HHHHHHHHcCCCCcEEEEECCHHHHHHHHHHCCCcceeccHHHHHHHHHHhhcccccccCCCCcEEEcCcccCCeecCCH
Confidence 4444444444 356888888888888887765322111 1 0110 00 12346
Q ss_pred HHHHHHHHcCCcEEEEeeccC
Q psy13219 90 QMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 90 ~ll~RAe~AG~~AlvvTVD~p 110 (193)
+++++++++|.+..+-|||.+
T Consensus 203 ~~v~~~~~~G~~v~vWTVN~~ 223 (249)
T cd08561 203 RFVRAAHAAGLEVHVWTVNDP 223 (249)
T ss_pred HHHHHHHHCCCEEEEEecCCH
Confidence 899999999999999999875
No 311
>KOG3425|consensus
Probab=24.83 E-value=3.2e+02 Score=20.96 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=29.9
Q ss_pred HHHHHHHHHHH-cCCcEEEEeeccCCCCCch--hhhhcCCCCCCcc
Q psy13219 87 LSLQMVQRAER-SGYSAIVITMDTAVLGSRY--RDLKNKFTMPPYL 129 (193)
Q Consensus 87 ~~~~ll~RAe~-AG~~AlvvTVD~pv~G~Re--~d~r~~~~~p~~~ 129 (193)
..+-.|..|=+ |+-+--+|+||. |+|+ +|.-|.|+.++..
T Consensus 50 ~AEPvi~~alk~ap~~~~~v~v~V---G~rp~Wk~p~n~FR~d~~~ 92 (128)
T KOG3425|consen 50 AAEPVINEALKHAPEDVHFVHVYV---GNRPYWKDPANPFRKDPGI 92 (128)
T ss_pred HhhHHHHHHHHhCCCceEEEEEEe---cCCCcccCCCCccccCCCc
Confidence 45567777744 899999999996 8998 6777777666554
No 312
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=24.74 E-value=1.2e+02 Score=26.87 Aligned_cols=62 Identities=6% Similarity=0.083 Sum_probs=35.0
Q ss_pred HHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecC--------HHHHHHHHHHHHHcCCcEEEEee
Q psy13219 43 ARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKD--------RALSLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 43 araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~d--------r~~~~~ll~RAe~AG~~AlvvTV 107 (193)
.....++|..|-=...-...+.+|-+.. |..+.-|-++.| -+.+.++.+||+++|.+-+ |+.
T Consensus 9 ~~~~E~~G~~f~~~~G~~~d~~~ilk~~--G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vl-ldf 78 (332)
T PF07745_consen 9 LPEMEAAGVKFYDENGQEKDLFQILKDH--GVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVL-LDF 78 (332)
T ss_dssp HHHHHHTT---B-TTSSB--HHHHHHHT--T--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEE-EEE
T ss_pred HHHHHHcCCeEECCCCCCCCHHHHHHhc--CCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEE-Eee
Confidence 3445666776544445566777787664 355666666554 5668899999999999765 443
No 313
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=24.71 E-value=1.7e+02 Score=23.98 Aligned_cols=14 Identities=7% Similarity=0.064 Sum_probs=7.8
Q ss_pred CCCCCHHHHHHHHh
Q psy13219 168 DDSVDWDDVRSLVQ 181 (193)
Q Consensus 168 ~~~~tW~di~wlr~ 181 (193)
....+|++++...+
T Consensus 184 ~~~~~~~~i~~~a~ 197 (206)
T PRK09140 184 RPGQSAEEVAERAR 197 (206)
T ss_pred ccccChHHHHHHHH
Confidence 33446777765433
No 314
>cd07900 Adenylation_DNA_ligase_I_Euk Adenylation domain of eukaryotic DNA Ligase I. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Some organisms express a variety of different ligases which appear to be targeted to specific functions. There are three classes of ATP-dependent DNA ligases in eukaryotic cells (I, III and IV). DNA ligase I is required for the ligation of Okazaki fragments during lagging-strand DNA synthesis and for base excision repair (BER). DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and C-terminal oligonucleotide/oligo
Probab=24.64 E-value=2.1e+02 Score=23.39 Aligned_cols=38 Identities=11% Similarity=0.168 Sum_probs=27.9
Q ss_pred EEEeecCHHHHHHHHHHHHHcCCcEEEEe-ec--cCCC-CCc
Q psy13219 78 QMYIFKDRALSLQMVQRAERSGYSAIVIT-MD--TAVL-GSR 115 (193)
Q Consensus 78 QlY~~~dr~~~~~ll~RAe~AG~~AlvvT-VD--~pv~-G~R 115 (193)
+.+...|.+...++++.|.+.|...||+= .| ++-. |+|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~g~EGiv~K~~~~~s~Y~~g~R 208 (219)
T cd07900 167 TSKDSEDTEEIQEFLEEAVKNNCEGLMVKTLDSDATYEPSKR 208 (219)
T ss_pred EEEecCCHHHHHHHHHHHHHcCCceEEEecCCCCCccCCCCc
Confidence 33445678889999999999999999984 34 4443 444
No 315
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=24.43 E-value=96 Score=25.90 Aligned_cols=54 Identities=13% Similarity=0.083 Sum_probs=33.1
Q ss_pred cCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHH
Q psy13219 33 LAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRA 86 (193)
Q Consensus 33 l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~ 86 (193)
++-|.-+..++++|.+.|+|++-+.++-+.+..-.+.+-...++|.--...-..
T Consensus 89 iVsP~~~~ev~~~a~~~~ip~~PG~~TptEi~~Ale~G~~~lK~FPa~~~Gg~~ 142 (211)
T COG0800 89 IVSPGLNPEVAKAANRYGIPYIPGVATPTEIMAALELGASALKFFPAEVVGGPA 142 (211)
T ss_pred EECCCCCHHHHHHHHhCCCcccCCCCCHHHHHHHHHcChhheeecCccccCcHH
Confidence 445556677888888888888887766554444444443455666554444333
No 316
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=24.25 E-value=2e+02 Score=20.78 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=28.7
Q ss_pred ceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccC
Q psy13219 74 TLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 74 ~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~p 110 (193)
...+=+-....-..+.+.++.|++.|++.|.+|-+.+
T Consensus 45 dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~~~ 81 (119)
T cd05017 45 TLVIAVSYSGNTEETLSAVEQAKERGAKIVAITSGGK 81 (119)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 3455455566667788899999999999999997653
No 317
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=24.22 E-value=2.7e+02 Score=19.76 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=27.8
Q ss_pred CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecc
Q psy13219 73 TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDT 109 (193)
Q Consensus 73 ~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~ 109 (193)
+..++=+-..++...+.++++.|++.|++.+++|-+.
T Consensus 61 ~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~ 97 (139)
T cd05013 61 GDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSA 97 (139)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCC
Confidence 3455545555566677889999999999999999764
No 318
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=24.21 E-value=4.3e+02 Score=22.18 Aligned_cols=71 Identities=10% Similarity=0.012 Sum_probs=37.3
Q ss_pred HHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcC--CcEEEEeeccCCCCCc
Q psy13219 39 EVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSG--YSAIVITMDTAVLGSR 115 (193)
Q Consensus 39 E~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG--~~AlvvTVD~pv~G~R 115 (193)
-.+++..+.+.++|++..+.++..+- . ...+.+|++. +.+......+++.+++.+ .+.+.+-.+.-..|++
T Consensus 84 ~~a~~~~~~~~~vp~i~~~~~~~~~~---~--~~~~~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~g~~ 156 (345)
T cd06338 84 TLAAAPVAEKYGVPMVAGSGASDSIF---A--QGFKYVFGTL-PPASQYAKSLLEMLVALDPRPKKVAILYADDPFSQD 156 (345)
T ss_pred HHHHHHHHHHhCCcEEecCCCCchHh---h--cCCceEEEec-CchHHHHHHHHHHHHhcCCCCceEEEEecCCcccHH
Confidence 35667777888888886554433332 1 1123455554 344455555666666554 4444443333334443
No 319
>PLN02347 GMP synthetase
Probab=24.17 E-value=2e+02 Score=27.20 Aligned_cols=64 Identities=13% Similarity=0.129 Sum_probs=42.7
Q ss_pred eeeccCccccHHHHHhhCC-CCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhh
Q psy13219 53 MILSLMSTTSLEEVRAQNP-STTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRD 118 (193)
Q Consensus 53 ~~lst~ss~s~eei~~~~~-~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d 118 (193)
+.++.+-...++++.+... .+..-.=+-=-.|-.....++.+| .|.+.+.|++|.+..+.+|.+
T Consensus 209 ~~~~~~~~~~i~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~a--lG~~v~av~id~g~~~~~E~~ 273 (536)
T PLN02347 209 WKMQDVLEEQIELIKATVGPDEHVICALSGGVDSTVAATLVHKA--IGDRLHCVFVDNGLLRYKEQE 273 (536)
T ss_pred cCcchHHHHHHHHHHHHhccCCeEEEEecCChhHHHHHHHHHHH--hCCcEEEEEEeCCCCChhHHH
Confidence 4455555566777876654 332233333344778887887664 589999999999998888743
No 320
>PRK02947 hypothetical protein; Provisional
Probab=24.15 E-value=3.6e+02 Score=22.52 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=27.3
Q ss_pred ceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecc
Q psy13219 74 TLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDT 109 (193)
Q Consensus 74 ~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~ 109 (193)
...+=+-....-..+.++++.|++.|++.|.||=..
T Consensus 108 Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~ 143 (246)
T PRK02947 108 DVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLA 143 (246)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 345545555566678889999999999999999753
No 321
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=24.14 E-value=3.2e+02 Score=22.60 Aligned_cols=20 Identities=20% Similarity=0.327 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHcCCcEEEEe
Q psy13219 87 LSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 87 ~~~~ll~RAe~AG~~AlvvT 106 (193)
...+++++++++|+..|++|
T Consensus 154 ~~~~~~~~~~~~g~~~ii~~ 173 (253)
T PRK02083 154 DAVEWAKEVEELGAGEILLT 173 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEc
Confidence 34578889999999998886
No 322
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=23.93 E-value=5e+02 Score=22.85 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=24.5
Q ss_pred cHHHHHhhCCCCceEEEEEeecCH-HHHHHHHHHHHHcCCcEEEEeecc
Q psy13219 62 SLEEVRAQNPSTTLWLQMYIFKDR-ALSLQMVQRAERSGYSAIVITMDT 109 (193)
Q Consensus 62 s~eei~~~~~~~~~wfQlY~~~dr-~~~~~ll~RAe~AG~~AlvvTVD~ 109 (193)
.++++..+...+..++.++...++ +..++.++.|++.|++..+--.|+
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s 137 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMS 137 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcc
Confidence 345554443334445555544333 445566666666666655444444
No 323
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=23.93 E-value=68 Score=20.85 Aligned_cols=54 Identities=9% Similarity=0.075 Sum_probs=25.4
Q ss_pred HHHHHHHHH-hccCceeeeccCccccHHHHHhhCCCCceEEEEEeec-CHHHHHHHHHHH
Q psy13219 38 GEVATARAA-GMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFK-DRALSLQMVQRA 95 (193)
Q Consensus 38 gE~~~araA-~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~-dr~~~~~ll~RA 95 (193)
-|..+.++. .+.||++.+-+....++ +.. ++...|.++|++. |-+..+++|+..
T Consensus 10 ~ea~~i~~~L~~~gI~~~v~~~~~~~~---~g~-~g~~~~~~v~V~~~d~~~A~~il~~~ 65 (67)
T PF09413_consen 10 IEAELIKGLLEENGIPAFVKNEHMSGY---AGE-PGTGGQVEVYVPEEDYERAREILEEF 65 (67)
T ss_dssp HHHHHHHHHHHHTT--EE--S----SS-------S--SSSEEEEEEGGGHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcEEEECCccchh---hcc-cCccCceEEEECHHHHHHHHHHHHHh
Confidence 344444444 45799999976554444 211 2233459999987 446666777653
No 324
>PRK08309 short chain dehydrogenase; Provisional
Probab=23.91 E-value=1.1e+02 Score=24.35 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=20.9
Q ss_pred ccCCchHHHHHHHHHhccCce-------eeeccCc
Q psy13219 32 KLAHADGEVATARAAGMMDAI-------MILSLMS 59 (193)
Q Consensus 32 ~l~~~~gE~~~araA~~~g~~-------~~lst~s 59 (193)
..+|.++-..++.+|++.|+. ++++|.+
T Consensus 81 ~~vh~~~~~~~~~~~~~~gv~~~~~~~~h~~gs~~ 115 (177)
T PRK08309 81 AWIHSSAKDALSVVCRELDGSSETYRLFHVLGSAA 115 (177)
T ss_pred EeccccchhhHHHHHHHHccCCCCceEEEEeCCcC
Confidence 445788888888888888755 6777766
No 325
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=23.87 E-value=88 Score=26.11 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=20.5
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEee
Q psy13219 83 KDRALSLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 83 ~dr~~~~~ll~RAe~AG~~AlvvTV 107 (193)
.|.+.+.+.+++.+++|+.+|=+.+
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i 35 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI 35 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC
Confidence 4567888999999999999977664
No 326
>PRK06740 histidinol-phosphatase; Validated
Probab=23.75 E-value=2.3e+02 Score=24.88 Aligned_cols=46 Identities=9% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEE
Q psy13219 41 ATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVI 105 (193)
Q Consensus 41 ~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~Alvv 105 (193)
.+.+.|.+.|+++++||=| +..++|.. ...+.++.++++|++.|.+
T Consensus 275 ~il~~~~e~Gv~~tlgSDA-H~p~~VG~------------------~~~~a~~~l~~~G~~~i~~ 320 (331)
T PRK06740 275 LFLQVLAKHEVPITLSSDA-HYPNDLGK------------------YVEENVKTLRNHGVTSLAT 320 (331)
T ss_pred HHHHHHHHCCCeEEEeeCC-CCHHHHHh------------------HHHHHHHHHHHcCCcEEEE
No 327
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=23.65 E-value=1.1e+02 Score=24.05 Aligned_cols=67 Identities=9% Similarity=0.010 Sum_probs=39.5
Q ss_pred HHHHHHhccCceeeeccCcc-----ccHHHH-----------HhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEE
Q psy13219 41 ATARAAGMMDAIMILSLMST-----TSLEEV-----------RAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIV 104 (193)
Q Consensus 41 ~~araA~~~g~~~~lst~ss-----~s~eei-----------~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~Alv 104 (193)
.+.+...+.|--+..-|++. .+.+++ .+..+..+.|| -|+... .+..+++-+++.||+.+.
T Consensus 49 ~~~~~i~~~Gheig~Ht~~H~~~~~~~~~~~~~ei~~~~~~l~~~~g~~~~~f-r~P~G~--~~~~~~~~l~~~G~~~v~ 125 (191)
T TIGR02764 49 ELVKEIVKDGHEIGSHGYRHKNYTTLEDEKIKKDILRAQEIIEKLTGKKPTLF-RPPSGA--FNKAVLKAAESLGYTVVH 125 (191)
T ss_pred HHHHHHHhCCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHhCCCCCEE-ECCCcC--CCHHHHHHHHHcCCeEEE
Confidence 56677777776555444432 232322 22233345565 344432 345667778899999999
Q ss_pred EeeccC
Q psy13219 105 ITMDTA 110 (193)
Q Consensus 105 vTVD~p 110 (193)
.++|+.
T Consensus 126 w~~~~~ 131 (191)
T TIGR02764 126 WSVDSR 131 (191)
T ss_pred ecCCCC
Confidence 999975
No 328
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=23.60 E-value=4e+02 Score=23.57 Aligned_cols=85 Identities=14% Similarity=0.053 Sum_probs=48.0
Q ss_pred CCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHH-------HhhCCCCceEEEEEeecCHHHHHHHH
Q psy13219 20 RCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEV-------RAQNPSTTLWLQMYIFKDRALSLQMV 92 (193)
Q Consensus 20 ~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei-------~~~~~~~~~wfQlY~~~dr~~~~~ll 92 (193)
..||+-+||+... . .-.+|.|..++|-.-+++... .+.|++ .+...+.|.-.-|-.+.+.....+.+
T Consensus 2 ~yPIiqgpM~~vs--~---~~~LaaAVS~AGgLG~la~~~-~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l 75 (320)
T cd04743 2 RYPIVQGPMTRVS--D---VAEFAVAVAEGGGLPFIALAL-MRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQL 75 (320)
T ss_pred CCCEECCCcCCCC--C---cHHHHHHHHhCCccccCCCCC-CCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHH
Confidence 4699999986321 1 135667777777665665432 344433 22123334222222233333445677
Q ss_pred HHHHHcCCcEEEEeeccC
Q psy13219 93 QRAERSGYSAIVITMDTA 110 (193)
Q Consensus 93 ~RAe~AG~~AlvvTVD~p 110 (193)
+-+.+.+.+.++++.-.|
T Consensus 76 ~vi~e~~v~~V~~~~G~P 93 (320)
T cd04743 76 AVVRAIKPTFALIAGGRP 93 (320)
T ss_pred HHHHhcCCcEEEEcCCCh
Confidence 777888998888776555
No 329
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=23.56 E-value=82 Score=27.35 Aligned_cols=24 Identities=25% Similarity=0.609 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHhcCCCCEEEec
Q psy13219 168 DDSVDWDDVRSLVQATKLPIVCKG 191 (193)
Q Consensus 168 ~~~~tW~di~wlr~~~~lPivlKG 191 (193)
.|.++|+-|+.|++..+.|+||=|
T Consensus 186 ~p~Ld~~~L~~i~~~~~vPLVlHG 209 (284)
T PRK12857 186 EPKLDFDRLAKIKELVNIPIVLHG 209 (284)
T ss_pred CCcCCHHHHHHHHHHhCCCEEEeC
Confidence 588999999999999999999987
No 330
>TIGR03856 F420_MSMEG_2906 probable F420-dependent oxidoreductase, MSMEG_2906 family. This model describes a small family of enzymes in the bacterial luciferase-like monooxygenase family, which includes F420-dependent enzymes such as N5,N10-methylenetetrahydromethanopterin reductase as well as FMN-dependent enzymes. All members of this family are from species that produce coenzyme F420; SIMBAL analysis suggests that members of this family bind F420 rather than FMN.
Probab=23.29 E-value=1e+02 Score=25.90 Aligned_cols=26 Identities=31% Similarity=0.193 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeeccC
Q psy13219 84 DRALSLQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 84 dr~~~~~ll~RAe~AG~~AlvvTVD~p 110 (193)
|-+...++.++||++||..+++. |..
T Consensus 14 ~~~~~~~~a~~AE~~Gfd~vw~~-dH~ 39 (249)
T TIGR03856 14 DYRTWRDAVRRAEDLGVDVIFNW-DHF 39 (249)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEc-cCc
Confidence 45778889999999999999986 654
No 331
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=23.28 E-value=80 Score=23.63 Aligned_cols=20 Identities=10% Similarity=0.292 Sum_probs=16.3
Q ss_pred HHHHHHHHHcCCcEEEEeec
Q psy13219 89 LQMVQRAERSGYSAIVITMD 108 (193)
Q Consensus 89 ~~ll~RAe~AG~~AlvvTVD 108 (193)
.+.++.|+++|+.+++|-=|
T Consensus 54 ~~K~~~Aq~aGA~avII~n~ 73 (126)
T cd02126 54 VEKARRVQKAGAIGGIVIDN 73 (126)
T ss_pred HHHHHHHHHCCCcEEEEEEC
Confidence 45688899999999999633
No 332
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=23.27 E-value=1.3e+02 Score=24.11 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=29.4
Q ss_pred CceEEEEEeec----------CHHHHHHHHHHHHHcCCcEEEEeeccCCC
Q psy13219 73 TTLWLQMYIFK----------DRALSLQMVQRAERSGYSAIVITMDTAVL 112 (193)
Q Consensus 73 ~~~wfQlY~~~----------dr~~~~~ll~RAe~AG~~AlvvTVD~pv~ 112 (193)
...|+.|=+.. -+++++..+++|+.+||.+++|-=|.+-.
T Consensus 72 ~~~~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGdp~YY 121 (171)
T COG3153 72 ELGWLGLAPLAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGDPTYY 121 (171)
T ss_pred ccceEEEEeEEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecCcccc
Confidence 34577665422 23577778888999999999999888765
No 333
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=23.21 E-value=79 Score=20.43 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEeeccC
Q psy13219 86 ALSLQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 86 ~~~~~ll~RAe~AG~~AlvvTVD~p 110 (193)
.+...+++.|++.|++.|.+++...
T Consensus 45 ~L~~~~~~~~~~~g~~~i~~~~~~~ 69 (83)
T PF00583_consen 45 KLLQAAEEWARKRGIKRIYLDVSPD 69 (83)
T ss_dssp HHHHHHHHHHHHTTESEEEEEEETT
T ss_pred hhhhhhhhhHHhcCccEEEEEEeCC
Confidence 3555666777788999999988764
No 334
>cd07901 Adenylation_DNA_ligase_Arch_LigB Adenylation domain of archaeal and bacterial LigB-like DNA ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of archaeal DNA ligases and bacterial proteins similar to Mycobacterium tuberculosis LigB. Members of this group contain adeny
Probab=23.04 E-value=3.3e+02 Score=21.83 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=29.4
Q ss_pred EeecCHHHHHHHHHHHHHcCCcEEEEe-eccCCC-CCch
Q psy13219 80 YIFKDRALSLQMVQRAERSGYSAIVIT-MDTAVL-GSRY 116 (193)
Q Consensus 80 Y~~~dr~~~~~ll~RAe~AG~~AlvvT-VD~pv~-G~Re 116 (193)
+...+.+...++++++.+.|+..||+- .|++.. |+|.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~g~EGiv~K~~~s~Y~~g~Rs 198 (207)
T cd07901 160 IVTDDPEEAEEFFEEALEAGHEGVMVKSLDSPYQAGRRG 198 (207)
T ss_pred EecCCHHHHHHHHHHHHHcCCceEEEeCCCCCcCCCCCC
Confidence 345677889999999999999999997 687763 4454
No 335
>PRK10200 putative racemase; Provisional
Probab=22.98 E-value=74 Score=26.42 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCCCC
Q psy13219 86 ALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFTMP 126 (193)
Q Consensus 86 ~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~~p 126 (193)
....+.+++-+++|++.|++...|+..= ..+++..+.+|
T Consensus 62 ~~l~~~~~~L~~~g~~~iviaCNTah~~--~~~l~~~~~iP 100 (230)
T PRK10200 62 DILAEAALGLQRAGAEGIVLCTNTMHKV--ADAIESRCSLP 100 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEECCchHHHH--HHHHHHhCCCC
Confidence 4566778888999999999999998765 46788877776
No 336
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=22.97 E-value=2.7e+02 Score=25.47 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=46.7
Q ss_pred eeCCceeecchhccccCCchHHHHHHHHHhcc--CceeeeccCccc-cHHHHHhhCC-CCceEEEEEeecCHHHHHHHHH
Q psy13219 18 RYRCPVGIAPSAMQKLAHADGEVATARAAGMM--DAIMILSLMSTT-SLEEVRAQNP-STTLWLQMYIFKDRALSLQMVQ 93 (193)
Q Consensus 18 ~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~--g~~~~lst~ss~-s~eei~~~~~-~~~~wfQlY~~~dr~~~~~ll~ 93 (193)
....|++|.-+| ||+.|..+.++|.+. |=.-+|.+.+-. -++++++.+- .+. -.=..-+.|-+..+.+-+
T Consensus 186 av~vPLIL~gsg-----~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~Ny~~ia~lAk~yg~-~Vvv~s~~Din~ak~Ln~ 259 (389)
T TIGR00381 186 AVDVPIVIGGSG-----NPEKDPLVLEKAAEVAEGERCLLASANLDLDYEKIANAAKKYGH-VVLSWTIMDINMQKTLNR 259 (389)
T ss_pred hCCCCEEEeCCC-----CCcCCHHHHHHHHHHhCCCCcEEEecCchhhHHHHHHHHHHhCC-eEEEEcCCcHHHHHHHHH
Confidence 356777775554 444443333333321 322233333333 4555554431 111 111222457777777777
Q ss_pred HHHHcCCc--EEEEeeccCCCCCc
Q psy13219 94 RAERSGYS--AIVITMDTAVLGSR 115 (193)
Q Consensus 94 RAe~AG~~--AlvvTVD~pv~G~R 115 (193)
.+.++|++ -||+..=+-.+|.-
T Consensus 260 kL~~~Gv~~eDIVlDP~t~alG~G 283 (389)
T TIGR00381 260 YLLKRGLMPRDIVMDPTTCALGYG 283 (389)
T ss_pred HHHHcCCCHHHEEEcCCCccccCC
Confidence 78888888 77777666554443
No 337
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=22.87 E-value=4.5e+02 Score=21.87 Aligned_cols=67 Identities=12% Similarity=0.144 Sum_probs=39.9
Q ss_pred HHHHHHHhccCc--eeeeccCcc-ccHHHHHhhCCCC--ceEEEEEe-----------------------ecCHHHHHHH
Q psy13219 40 VATARAAGMMDA--IMILSLMST-TSLEEVRAQNPST--TLWLQMYI-----------------------FKDRALSLQM 91 (193)
Q Consensus 40 ~~~araA~~~g~--~~~lst~ss-~s~eei~~~~~~~--~~wfQlY~-----------------------~~dr~~~~~l 91 (193)
..+...-.+.|. ..+++|+.. ..++.+.+..+.. ..-.+++- +...-.+.++
T Consensus 136 ~~v~~~l~~~~~~~~v~i~SF~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 215 (265)
T cd08564 136 ERVLNLVEKYGMILQVHFSSFLHYDRLDLLKALRPNKLNVPIALLFNEVKSPSPLDFLEQAKYYNATWVNFSYDFWTEEF 215 (265)
T ss_pred HHHHHHHHHcCCCCCEEEEecCchhHHHHHHHhCcCCCCceEEEEecCCCCcccccHHHHHHhcCCceeeechhhhhHHH
Confidence 355555555554 567777777 7777776655531 11122221 1123346678
Q ss_pred HHHHHHcCCcEEEEe
Q psy13219 92 VQRAERSGYSAIVIT 106 (193)
Q Consensus 92 l~RAe~AG~~AlvvT 106 (193)
+++++++|.+..+-|
T Consensus 216 v~~~~~~Gl~v~~wT 230 (265)
T cd08564 216 VKKAHENGLKVMTYF 230 (265)
T ss_pred HHHHHHcCCEEEEec
Confidence 888888898888888
No 338
>PRK13937 phosphoheptose isomerase; Provisional
Probab=22.87 E-value=2.9e+02 Score=21.86 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=28.0
Q ss_pred CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeec
Q psy13219 73 TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMD 108 (193)
Q Consensus 73 ~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD 108 (193)
+...+=+-..+.-..+.+.++.|++.|++.+.+|=.
T Consensus 107 ~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~ 142 (188)
T PRK13937 107 GDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGR 142 (188)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 345555555666677888999999999999999963
No 339
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=22.82 E-value=1e+02 Score=22.84 Aligned_cols=38 Identities=8% Similarity=0.101 Sum_probs=25.6
Q ss_pred cCCchHHHHHHHHHhccCceeeeccCcc--ccHHHHHhhC
Q psy13219 33 LAHADGEVATARAAGMMDAIMILSLMST--TSLEEVRAQN 70 (193)
Q Consensus 33 l~~~~gE~~~araA~~~g~~~~lst~ss--~s~eei~~~~ 70 (193)
+-+|+.=...++.|.++|++++++|.+- .-++++.+.+
T Consensus 74 fT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a 113 (124)
T PF01113_consen 74 FTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELA 113 (124)
T ss_dssp ES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHT
T ss_pred cCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHh
Confidence 3467777899999999999999998653 3345555544
No 340
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=22.79 E-value=3.5e+02 Score=22.88 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=21.2
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeeccCCCCC
Q psy13219 83 KDRALSLQMVQRAERSGYSAIVITMDTAVLGS 114 (193)
Q Consensus 83 ~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~ 114 (193)
-+.+.+.++++++.++|+..| .=.|+--...
T Consensus 138 ~~~~~l~~~~~~~~~~g~~~i-~l~Dt~G~~~ 168 (262)
T cd07948 138 SDLVDLLRVYRAVDKLGVNRV-GIADTVGIAT 168 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEE-EECCcCCCCC
Confidence 366778888888888888864 3457654433
No 341
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=22.74 E-value=2.7e+02 Score=23.28 Aligned_cols=70 Identities=9% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeec----CHHHHHHHHHHHHHcCCcEEEEeecc
Q psy13219 39 EVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFK----DRALSLQMVQRAERSGYSAIVITMDT 109 (193)
Q Consensus 39 E~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~----dr~~~~~ll~RAe~AG~~AlvvTVD~ 109 (193)
++..|..+.--.+.+.++..-..-+++..+.....-.-.++++.. +++...+++++++++|+..|.+ .|+
T Consensus 90 ~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l-~DT 163 (263)
T cd07943 90 DLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYV-TDS 163 (263)
T ss_pred HHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEE-cCC
No 342
>KOG1436|consensus
Probab=22.73 E-value=25 Score=31.47 Aligned_cols=21 Identities=33% Similarity=0.681 Sum_probs=18.1
Q ss_pred CCCCcceECCceeCCceeecc
Q psy13219 7 DRDSGLTVLGTRYRCPVGIAP 27 (193)
Q Consensus 7 ~~d~~t~~lG~~~~~P~~iaP 27 (193)
+.++.|++||++++-||++|.
T Consensus 81 ~~~L~~k~~g~~f~NPiglAA 101 (398)
T KOG1436|consen 81 DASLETKVLGRKFSNPIGLAA 101 (398)
T ss_pred ccchhhHHhhhhccCchhhhh
Confidence 446789999999999999975
No 343
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=22.55 E-value=2.7e+02 Score=22.60 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=27.2
Q ss_pred CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeec
Q psy13219 73 TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMD 108 (193)
Q Consensus 73 ~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD 108 (193)
+...+=+-....-..+.+.++.|++.|.+.|.+|=.
T Consensus 110 gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~ 145 (196)
T PRK10886 110 GDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGY 145 (196)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 334444555666677888999999999999999954
No 344
>PRK06849 hypothetical protein; Provisional
Probab=22.54 E-value=2.8e+02 Score=24.42 Aligned_cols=68 Identities=13% Similarity=0.082 Sum_probs=43.7
Q ss_pred HHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeec-C-HHHHHHHHHHHHHcCCcEEEEeecc
Q psy13219 39 EVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFK-D-RALSLQMVQRAERSGYSAIVITMDT 109 (193)
Q Consensus 39 E~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~-d-r~~~~~ll~RAe~AG~~AlvvTVD~ 109 (193)
=+.+||+++++|...++......++-...... ..++++-.++ | .+....|++-+++-++..|+-|.|.
T Consensus 17 ~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~---d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~vIP~~e~ 86 (389)
T PRK06849 17 ALELARLFHNAGHTVILADSLKYPLSRFSRAV---DGFYTIPSPRWDPDAYIQALLSIVQRENIDLLIPTCEE 86 (389)
T ss_pred HHHHHHHHHHCCCEEEEEeCCchHHHHHHHhh---hheEEeCCCCCCHHHHHHHHHHHHHHcCCCEEEECChH
Confidence 46899999999998877654433333222222 2355442222 3 3566788888888899888888773
No 345
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=22.53 E-value=4.8e+02 Score=22.14 Aligned_cols=41 Identities=7% Similarity=0.052 Sum_probs=25.9
Q ss_pred cHHHHHhhCCCCceEEEEEeecCH---------------HHHHHHHHHHHHcCCcE
Q psy13219 62 SLEEVRAQNPSTTLWLQMYIFKDR---------------ALSLQMVQRAERSGYSA 102 (193)
Q Consensus 62 s~eei~~~~~~~~~wfQlY~~~dr---------------~~~~~ll~RAe~AG~~A 102 (193)
..++|..+...+..++.++.+-+. +...+.++.|++.|++.
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v 130 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRV 130 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 455665554445667777776653 44556678888888764
No 346
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=22.49 E-value=2.9e+02 Score=20.83 Aligned_cols=39 Identities=5% Similarity=0.185 Sum_probs=25.7
Q ss_pred ceEEEEEeec------CHHHHHHHHHHHHHcCCcEEEEeeccCCCC
Q psy13219 74 TLWLQMYIFK------DRALSLQMVQRAERSGYSAIVITMDTAVLG 113 (193)
Q Consensus 74 ~~wfQlY~~~------dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G 113 (193)
..|++.|.+. ++++...|.+.++ .|.+.-+++-+.+...
T Consensus 36 ~I~i~~~~~~~~~~~~~~~l~~~L~~a~~-rGv~V~il~~~~~~~~ 80 (176)
T cd00138 36 SIYIASFYLSPLITEYGPVILDALLAAAR-RGVKVRILVDEWSNTD 80 (176)
T ss_pred EEEEEEeEecccccccchHHHHHHHHHHH-CCCEEEEEEcccccCC
Confidence 4566666655 6666666665555 5999888887776543
No 347
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=22.49 E-value=2.8e+02 Score=21.18 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=26.1
Q ss_pred ceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEee
Q psy13219 74 TLWLQMYIFKDRALSLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 74 ~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTV 107 (193)
...+=+-..+.-..+.+.++.|++.|++.+.+|-
T Consensus 81 D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~ 114 (154)
T TIGR00441 81 DVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAG 114 (154)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 3444444455667788899999999999999996
No 348
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=22.33 E-value=3e+02 Score=26.89 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=41.8
Q ss_pred eeccCccccHHHHHhhCCCCceEEEEEee----------------cCHHHHHHHHHHHHHcCCcEEEEeeccCC-CCCc
Q psy13219 54 ILSLMSTTSLEEVRAQNPSTTLWLQMYIF----------------KDRALSLQMVQRAERSGYSAIVITMDTAV-LGSR 115 (193)
Q Consensus 54 ~lst~ss~s~eei~~~~~~~~~wfQlY~~----------------~dr~~~~~ll~RAe~AG~~AlvvTVD~pv-~G~R 115 (193)
..|+.|+.|+.+|++....-.+++-++++ .+++....+.+-+++.|-..+++ -|+|- ..||
T Consensus 416 lasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v-~d~pGfi~nR 493 (699)
T TIGR02440 416 FASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTPIVV-ADKAGFYVNR 493 (699)
T ss_pred EEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEE-ccccchHHHH
Confidence 34677888999999875432233333332 26777778888888999999888 59874 3445
No 349
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=22.32 E-value=3.3e+02 Score=22.97 Aligned_cols=64 Identities=27% Similarity=0.253 Sum_probs=33.6
Q ss_pred HHHHHHHhccCceeeecc-----CccccHHHHHhhCC--CCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecc
Q psy13219 40 VATARAAGMMDAIMILSL-----MSTTSLEEVRAQNP--STTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDT 109 (193)
Q Consensus 40 ~~~araA~~~g~~~~lst-----~ss~s~eei~~~~~--~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~ 109 (193)
..+|+++.+.|...+ |- +..-++|+|.+... +-|.- .+|-=.....++.|.++|+.++.|.+..
T Consensus 73 ~~~A~~~~~~GA~ai-svlte~~~f~g~~~~l~~v~~~v~iPvl-----~kdfi~~~~qi~~a~~~GAD~VlLi~~~ 143 (260)
T PRK00278 73 VEIAKAYEAGGAACL-SVLTDERFFQGSLEYLRAARAAVSLPVL-----RKDFIIDPYQIYEARAAGADAILLIVAA 143 (260)
T ss_pred HHHHHHHHhCCCeEE-EEecccccCCCCHHHHHHHHHhcCCCEE-----eeeecCCHHHHHHHHHcCCCEEEEEecc
Confidence 577788777776433 32 12234565544321 12211 1333222335777777888777666655
No 350
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=22.26 E-value=4.7e+02 Score=22.90 Aligned_cols=90 Identities=19% Similarity=0.083 Sum_probs=56.9
Q ss_pred CCceeCCceeecchhccccCCchHHHHHHHHHhccCc-eeeeccCc---------cccHHHHHhhCCCCceEEEEEeecC
Q psy13219 15 LGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDA-IMILSLMS---------TTSLEEVRAQNPSTTLWLQMYIFKD 84 (193)
Q Consensus 15 lG~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~-~~~lst~s---------s~s~eei~~~~~~~~~wfQlY~~~d 84 (193)
-...+..++++|||+.. .|...-+-+.+.|. -.+.|-+- ..++..+.......+.-.||. -.|
T Consensus 5 ~~~~~~~~~~lAPM~gv------td~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-gsd 77 (323)
T COG0042 5 GLIELRNRVILAPMAGV------TDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLG-GSD 77 (323)
T ss_pred ccccccCcEEEecCCCC------ccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEec-CCC
Confidence 34567889999998643 23334444444454 33333221 112222222223457889995 677
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeeccCC
Q psy13219 85 RALSLQMVQRAERSGYSAIVITMDTAV 111 (193)
Q Consensus 85 r~~~~~ll~RAe~AG~~AlvvTVD~pv 111 (193)
++...+-.+.+++.||..|=|.+=.|+
T Consensus 78 p~~l~eaA~~~~~~g~~~IdlN~GCP~ 104 (323)
T COG0042 78 PELLAEAAKIAEELGADIIDLNCGCPS 104 (323)
T ss_pred HHHHHHHHHHHHhcCCCEEeeeCCCCh
Confidence 899999999999999998888887775
No 351
>PF13362 Toprim_3: Toprim domain
Probab=22.25 E-value=2.1e+02 Score=19.77 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=30.4
Q ss_pred eeccCccccHHHHHhhCCCCceEEEEEeecCHH-------HHHHHHHHHHHcCCcEEEEee
Q psy13219 54 ILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRA-------LSLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 54 ~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~-------~~~~ll~RAe~AG~~AlvvTV 107 (193)
+++.++...++.+.... .+-++|+..|.+ ...++.++.+++|..+.++.-
T Consensus 23 ~~a~~~~~nl~~~~~~~----~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~~p 79 (96)
T PF13362_consen 23 VVAALGAGNLKNVAIPE----PGRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIVEP 79 (96)
T ss_pred EEEEEChhhhhhhcCCC----CCCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEECC
Confidence 44455555666554331 233556655443 345777888889999888876
No 352
>cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function.
Probab=22.25 E-value=3.9e+02 Score=21.95 Aligned_cols=71 Identities=17% Similarity=0.099 Sum_probs=41.3
Q ss_pred HHHHHHHhccCc--eeeeccCccccHHHHHhhCCCCceEE---------------------EEEeecCHH-HHHHHHHHH
Q psy13219 40 VATARAAGMMDA--IMILSLMSTTSLEEVRAQNPSTTLWL---------------------QMYIFKDRA-LSLQMVQRA 95 (193)
Q Consensus 40 ~~~araA~~~g~--~~~lst~ss~s~eei~~~~~~~~~wf---------------------QlY~~~dr~-~~~~ll~RA 95 (193)
..+++...+.|. ..+++|++...++++.+..|+-+..+ +.|-..... .....+.++
T Consensus 113 ~~~~~~~~~~~~~~~v~~~sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (240)
T cd08566 113 DEVIALVKKHGALDQVIFKSYSEEQAKELRALAPEVMLMPIVRDAEDLDEEEARAIDALNLLAFEITFDDLDLPPLFDEL 192 (240)
T ss_pred HHHHHHHHHcCCcccEEEEECCHHHHHHHHHhCCCCEEEEEEccCcchhHHHHhcccccceEEEEEeccccccHHHHHHH
Confidence 345555555554 55788888888888877655321110 111111111 355677777
Q ss_pred HHc-CCcEEEEeeccC
Q psy13219 96 ERS-GYSAIVITMDTA 110 (193)
Q Consensus 96 e~A-G~~AlvvTVD~p 110 (193)
.++ |.+..+-||+..
T Consensus 193 ~~~~Gl~v~~wTvn~~ 208 (240)
T cd08566 193 LRALGIRVWVNTLGDD 208 (240)
T ss_pred HHhCCCEEEEECCCcc
Confidence 776 888888888864
No 353
>PRK08392 hypothetical protein; Provisional
Probab=22.24 E-value=91 Score=25.33 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEeeccC
Q psy13219 86 ALSLQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 86 ~~~~~ll~RAe~AG~~AlvvTVD~p 110 (193)
...++++++|.+.|++.+.+|==.|
T Consensus 14 ~~~~e~v~~A~~~Gl~~i~iTdH~~ 38 (215)
T PRK08392 14 GSVRDNIAEAERKGLRLVGISDHIH 38 (215)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCC
Confidence 3477899999999999999994443
No 354
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=22.23 E-value=3.6e+02 Score=21.50 Aligned_cols=69 Identities=25% Similarity=0.312 Sum_probs=40.8
Q ss_pred HHHHHhccC---ceeeeccCccccHHHHHhhCCCCceEEEEEe------------------ecCHHHHHHHHHHHHHcCC
Q psy13219 42 TARAAGMMD---AIMILSLMSTTSLEEVRAQNPSTTLWLQMYI------------------FKDRALSLQMVQRAERSGY 100 (193)
Q Consensus 42 ~araA~~~g---~~~~lst~ss~s~eei~~~~~~~~~wfQlY~------------------~~dr~~~~~ll~RAe~AG~ 100 (193)
+.....+.+ -..+++|+....+..+.+..|.-...+=.+. ....-...++++.++++|.
T Consensus 121 v~~~l~~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~ 200 (229)
T cd08562 121 VAAALRELWPHASKLLLSSFSLEALRAARRAAPELPLGLLFDTLPADWLELLAALGAVSIHLNYRGLTEEQVKALKDAGY 200 (229)
T ss_pred HHHHHHHhcCCcCCEEEECCCHHHHHHHHHhCCCCcEEEEecCCCcCHHHHHHHcCCeEEecChhhCCHHHHHHHHHCCC
Confidence 444444554 3467888888888888877664332211010 0111234567888888888
Q ss_pred cEEEEeeccC
Q psy13219 101 SAIVITMDTA 110 (193)
Q Consensus 101 ~AlvvTVD~p 110 (193)
+-.+-||+.+
T Consensus 201 ~v~~wTvn~~ 210 (229)
T cd08562 201 KLLVYTVNDP 210 (229)
T ss_pred EEEEEeCCCH
Confidence 8888888764
No 355
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=22.10 E-value=1.4e+02 Score=21.31 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=24.0
Q ss_pred EEeecCHHHHHHHHHHHHHcCCcEEEEeecc
Q psy13219 79 MYIFKDRALSLQMVQRAERSGYSAIVITMDT 109 (193)
Q Consensus 79 lY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~ 109 (193)
+-..+....+.+.++.|++.|++.|++|-..
T Consensus 60 is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~ 90 (131)
T PF01380_consen 60 ISYSGETRELIELLRFAKERGAPVILITSNS 90 (131)
T ss_dssp EESSSTTHHHHHHHHHHHHTTSEEEEEESST
T ss_pred eeccccchhhhhhhHHHHhcCCeEEEEeCCC
Confidence 4445566677788999999999999998543
No 356
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=22.09 E-value=79 Score=28.25 Aligned_cols=29 Identities=21% Similarity=0.105 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeeccCCCC
Q psy13219 85 RALSLQMVQRAERSGYSAIVITMDTAVLG 113 (193)
Q Consensus 85 r~~~~~ll~RAe~AG~~AlvvTVD~pv~G 113 (193)
...+.+++++++++|.+-.+-|||.|..-
T Consensus 209 ~~lt~~~v~~~~~~Gl~V~vWTVN~~~~~ 237 (351)
T cd08608 209 TQASAQEIRDYSASNLSVNLYTVNEPWLY 237 (351)
T ss_pred hhcCHHHHHHHHHCCCEEEEEecCCHHHH
Confidence 45678999999999999999999987433
No 357
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=22.08 E-value=5.4e+02 Score=22.57 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=18.2
Q ss_pred CCCCHHHHHHHHhcCCCCEEEec
Q psy13219 169 DSVDWDDVRSLVQATKLPIVCKG 191 (193)
Q Consensus 169 ~~~tW~di~wlr~~~~lPivlKG 191 (193)
+...|+.++.+++.++.||++=|
T Consensus 270 ~~~~~~~~~~ik~~~~ipvi~~G 292 (343)
T cd04734 270 PGPFLPLAARIKQAVDLPVFHAG 292 (343)
T ss_pred cchhHHHHHHHHHHcCCCEEeeC
Confidence 34568888899999999988766
No 358
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=22.02 E-value=4.3e+02 Score=23.74 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=20.7
Q ss_pred CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219 73 TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 73 ~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT 106 (193)
-|.|.=|- .|-....++.+.++++|+.+|+++
T Consensus 169 ~Pv~vKl~--p~~~~~~~~a~~~~~~Gadgi~~~ 200 (420)
T PRK08318 169 LPVIVKLT--PNITDIREPARAAKRGGADAVSLI 200 (420)
T ss_pred CcEEEEcC--CCcccHHHHHHHHHHCCCCEEEEe
Confidence 35555443 343446677788888888887754
No 359
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=22.01 E-value=34 Score=31.12 Aligned_cols=41 Identities=24% Similarity=0.433 Sum_probs=30.4
Q ss_pred EEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhh
Q psy13219 76 WLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRD 118 (193)
Q Consensus 76 wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d 118 (193)
|...|..-+.+.+.++++.|+++||+- +.+|--..+.|..|
T Consensus 48 W~~~~~d~~e~~i~~~a~~~~~~G~e~--fviDDGW~~~r~~d 88 (394)
T PF02065_consen 48 WEAYYFDITEEKILELADAAAELGYEY--FVIDDGWFGGRDDD 88 (394)
T ss_dssp HHHHTTG--HHHHHHHHHHHHHHT-SE--EEE-SSSBCTESTT
T ss_pred ccccCcCCCHHHHHHHHHHHHHhCCEE--EEEcCccccccCCC
Confidence 666677778899999999999999994 66788888888776
No 360
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.98 E-value=4.4e+02 Score=23.14 Aligned_cols=67 Identities=13% Similarity=0.033 Sum_probs=44.3
Q ss_pred ccCceeeeccCccccHHHHHhhCCCCceEEEEEee----------------cCHHHHHHHHHHHHHcCCcEEEEeeccCC
Q psy13219 48 MMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIF----------------KDRALSLQMVQRAERSGYSAIVITMDTAV 111 (193)
Q Consensus 48 ~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~----------------~dr~~~~~ll~RAe~AG~~AlvvTVD~pv 111 (193)
..++ .+-|+.|+.++.++++....-.+++=++++ .|++....+.+-+++.|-+.+++.=|+|-
T Consensus 110 ~~~a-IlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pG 188 (321)
T PRK07066 110 KPDA-IIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPG 188 (321)
T ss_pred CCCe-EEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEeEecCCCCcc
Confidence 3455 444555677889998775422233333322 27888888888889999998888768875
Q ss_pred -CCCc
Q psy13219 112 -LGSR 115 (193)
Q Consensus 112 -~G~R 115 (193)
.+||
T Consensus 189 Fi~NR 193 (321)
T PRK07066 189 FIADR 193 (321)
T ss_pred HHHHH
Confidence 3555
No 361
>TIGR03612 RutA pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase.
Probab=21.96 E-value=1.1e+02 Score=27.13 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEe
Q psy13219 84 DRALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 84 dr~~~~~ll~RAe~AG~~AlvvT 106 (193)
|-+...+++++||++||.++++.
T Consensus 26 ~~~~~~~~a~~AE~~Gfd~v~~~ 48 (355)
T TIGR03612 26 SFELNKAIVQKAEQYGFDFALSM 48 (355)
T ss_pred CHHHHHHHHHHHHhcCCCEEEec
Confidence 57888999999999999999953
No 362
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=21.93 E-value=1.8e+02 Score=25.61 Aligned_cols=35 Identities=6% Similarity=0.004 Sum_probs=28.8
Q ss_pred CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEee
Q psy13219 73 TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 73 ~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTV 107 (193)
-|.|.=|.+.-+.+...++++.|+++|+.+|+++=
T Consensus 211 ~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~N 245 (335)
T TIGR01036 211 VPVLVKIAPDLTESDLEDIADSLVELGIDGVIATN 245 (335)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEEC
Confidence 46787777776767788999999999999998854
No 363
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=21.92 E-value=1.3e+02 Score=24.02 Aligned_cols=71 Identities=11% Similarity=0.067 Sum_probs=44.0
Q ss_pred CCchHHHHHHHHHhccCceeeec-cCccc------cHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219 34 AHADGEVATARAAGMMDAIMILS-LMSTT------SLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 34 ~~~~gE~~~araA~~~g~~~~ls-t~ss~------s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT 106 (193)
++..-...+-++|.+.|.-+.+- ..... .+|.+.+..++++. ..+-|.+.....+++|+++|.+.+.+.
T Consensus 12 ~~~~~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Ii----v~~~~~~~~~~~l~~~~~~gIpvv~~d 87 (257)
T PF13407_consen 12 FWQQVIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGII----VSPVDPDSLAPFLEKAKAAGIPVVTVD 87 (257)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEE----EESSSTTTTHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEE----ecCCCHHHHHHHHHHHhhcCceEEEEe
Confidence 34455677888888888887773 32221 23444444455432 234566667789999999999655544
Q ss_pred ec
Q psy13219 107 MD 108 (193)
Q Consensus 107 VD 108 (193)
.|
T Consensus 88 ~~ 89 (257)
T PF13407_consen 88 SD 89 (257)
T ss_dssp ST
T ss_pred cc
Confidence 44
No 364
>TIGR03842 F420_CPS_4043 F420-dependent oxidoreductase, CPS_4043 family. This model represents a family of putative F420-dependent oxidoreductases, fairly closely related to 5,10-methylenetetrahydromethanopterin reductase (mer, TIGR03555), both within the bacterial luciferase-like monoxygenase (LLM) family. A fairly deep split (to about 40 % sequence identity) in the present family separates a strictly Actinobacterial clade from an alpha/beta/gamma-proteobacterial clade, in which the member is often the only apparent F420-dependent LLM family member. The specific function, and whether Actinobacterial and Proteobacterial clades differ in function, are unknown.
Probab=21.89 E-value=1.3e+02 Score=26.15 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEe
Q psy13219 84 DRALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 84 dr~~~~~ll~RAe~AG~~AlvvT 106 (193)
..+...+++++||++||..++++
T Consensus 11 ~~~~~~~~a~~AE~~Gfd~~w~~ 33 (330)
T TIGR03842 11 PASRVVELARQAERHGFDYVWTF 33 (330)
T ss_pred CHHHHHHHHHHHHHcCCcEEEec
Confidence 45777889999999999999884
No 365
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=21.86 E-value=2.6e+02 Score=20.87 Aligned_cols=34 Identities=12% Similarity=0.191 Sum_probs=24.1
Q ss_pred CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEe
Q psy13219 73 TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 73 ~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvT 106 (193)
+...+=+-....-....+.++.|++-|.+.|.||
T Consensus 104 gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 104 GDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp T-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 3445555555666778889999999999999998
No 366
>TIGR03857 F420_MSMEG_2249 probable F420-dependent oxidoreductase, MSMEG_2249 family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes a distinctive subfamily, found only in F420-biosynthesizing members of the Actinobacteria of the bacterial luciferase-like monooxygenase (LLM) superfamily.
Probab=21.79 E-value=1.1e+02 Score=26.78 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.2
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEee
Q psy13219 83 KDRALSLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 83 ~dr~~~~~ll~RAe~AG~~AlvvTV 107 (193)
.|-+...++.++||++||.++++.=
T Consensus 11 ~~~~~~~~~a~~AE~~Gfd~vw~~E 35 (329)
T TIGR03857 11 ADPAQAIDEARAAERLGFGTVYLSE 35 (329)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecc
Confidence 3667778899999999999999883
No 367
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=21.70 E-value=2.6e+02 Score=23.91 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=26.1
Q ss_pred HHHHHHHhccCceeeeccCccccHHHHHhh
Q psy13219 40 VATARAAGMMDAIMILSLMSTTSLEEVRAQ 69 (193)
Q Consensus 40 ~~~araA~~~g~~~~lst~ss~s~eei~~~ 69 (193)
..+.+++++.|.|+++++.-+.+++|+..+
T Consensus 124 ~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A 153 (266)
T PRK13398 124 FELLKEVGKTKKPILLKRGMSATLEEWLYA 153 (266)
T ss_pred HHHHHHHhcCCCcEEEeCCCCCCHHHHHHH
Confidence 478999999999999999988888888654
No 368
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=21.68 E-value=3.3e+02 Score=21.94 Aligned_cols=15 Identities=20% Similarity=-0.008 Sum_probs=8.5
Q ss_pred HHHHhccCceeeecc
Q psy13219 43 ARAAGMMDAIMILSL 57 (193)
Q Consensus 43 araA~~~g~~~~lst 57 (193)
-+-|.+.|+|+.+-.
T Consensus 51 ~~~A~~lgipl~~i~ 65 (194)
T cd01994 51 ELQAEAMGIPLIRIE 65 (194)
T ss_pred HHHHHHcCCcEEEEe
Confidence 345566677765433
No 369
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=21.61 E-value=1e+02 Score=27.40 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHhcC-CCCEEEecC
Q psy13219 168 DDSVDWDDVRSLVQAT-KLPIVCKGI 192 (193)
Q Consensus 168 ~~~~tW~di~wlr~~~-~lPivlKGI 192 (193)
.|.++||-|+.|++.+ +.|+||=|-
T Consensus 200 ~p~Ld~d~L~~I~~~~~~vPLVLHGg 225 (321)
T PRK07084 200 PPPLRFDILEEIEKRIPGFPIVLHGS 225 (321)
T ss_pred CCccCHHHHHHHHHhcCCCCEEEeCC
Confidence 4789999999999999 699999873
No 370
>PF03738 GSP_synth: Glutathionylspermidine synthase preATP-grasp; InterPro: IPR005494 This region contains the Glutathionylspermidine synthase enzymatic activity 6.3.1.8 from EC. This is the C-terminal region in bienzymes such as P43675 from SWISSPROT. Glutathionylspermidine (GSP) synthetases of Trypanosomatidae and Escherichia coli couple hydrolysis of ATP (to ADP and Pi) with formation of an amide bond between spermidine and the glycine carboxylate of glutathione (gamma-Glu-Cys-Gly). In the pathogenic trypanosomatids, this reaction is the penultimate step in the biosynthesis of the antioxidant metabolite, trypanothione (N1,N8-bis-(glutathionyl)spermidine), and is a target for drug design [].; PDB: 2VPM_B 2VOB_B 2VPS_A 2IO9_A 2IO8_A 2IOB_A 2IOA_B 2IO7_B 3O98_B.
Probab=21.61 E-value=90 Score=22.12 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=23.2
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCch
Q psy13219 83 KDRALSLQMVQRAERSGYSAIVITMDTAVLGSRY 116 (193)
Q Consensus 83 ~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re 116 (193)
.|...+.-|.+.|++||+++.++.++- +|.++
T Consensus 12 ED~~t~~yL~~~a~qaG~~~~~~~i~~--l~~~~ 43 (97)
T PF03738_consen 12 EDRGTVQYLMDTARQAGLDTRFIPIED--LGWDE 43 (97)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEETTTT--EEE-T
T ss_pred HHHHHHHHHHHHHHHCCCCeEEechHh--eEECC
Confidence 356667778888899999999998885 55553
No 371
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=21.58 E-value=2.1e+02 Score=21.04 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=22.0
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeecc
Q psy13219 83 KDRALSLQMVQRAERSGYSAIVITMDT 109 (193)
Q Consensus 83 ~dr~~~~~ll~RAe~AG~~AlvvTVD~ 109 (193)
+.++.+.++++++++.|++.+++|-..
T Consensus 73 ~t~~~~~~~~~~~~~~~~~vi~it~~~ 99 (153)
T cd05009 73 RLEEKLESLIKEVKARGAKVIVITDDG 99 (153)
T ss_pred hhHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 345678899999999999999998654
No 372
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=21.50 E-value=1.4e+02 Score=23.32 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeeccC
Q psy13219 85 RALSLQMVQRAERSGYSAIVITMDTA 110 (193)
Q Consensus 85 r~~~~~ll~RAe~AG~~AlvvTVD~p 110 (193)
+.+...+++.|++-|++.+|+|.|..
T Consensus 22 q~Li~~~~~~a~~~~~~~~v~tF~~~ 47 (157)
T PF06574_consen 22 QKLIKKAVEIAKEKGLKSVVLTFDPH 47 (157)
T ss_dssp HHHHHHHHHHHHHCT-EEEEEEESS-
T ss_pred HHHHHHHhhhhhhcccceEEEEcccC
Confidence 56788899999999999999999964
No 373
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=21.47 E-value=3.2e+02 Score=23.09 Aligned_cols=74 Identities=9% Similarity=0.136 Sum_probs=38.1
Q ss_pred HHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHH-----cCCcEEEEeeccCCCCC
Q psy13219 40 VATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAER-----SGYSAIVITMDTAVLGS 114 (193)
Q Consensus 40 ~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~-----AG~~AlvvTVD~pv~G~ 114 (193)
.+++..+.+.|+|++.++.++.++.+.. .....+.+|.+. +.+......+++-++. .|.+-+.+-.+.-..|.
T Consensus 81 ~a~~~~~~~~~vp~i~~~~~~~~~t~~~-~~~~~~~~fr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~~~~g~ 158 (344)
T cd06345 81 LALQDVAAENKVPFIVTGAASPEITTAD-DYETYKYVFRAG-PTNSSYAQSVADALKETLVDKHGFKTAAIVAEDAAWGK 158 (344)
T ss_pred HHHHHHHHHcCCcEEeccCCCCcccccc-cccCCceEEecC-CCcHHHHHHHHHHHHHhhcccCCCceEEEEecCchhhh
Confidence 4677788888998876544433332210 011233455543 3344444555555543 56666665555545554
Q ss_pred c
Q psy13219 115 R 115 (193)
Q Consensus 115 R 115 (193)
.
T Consensus 159 ~ 159 (344)
T cd06345 159 G 159 (344)
T ss_pred H
Confidence 4
No 374
>TIGR03586 PseI pseudaminic acid synthase.
Probab=21.41 E-value=92 Score=27.60 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=0.0
Q ss_pred ecCHHHHHHHHHHHHHcCCcEE
Q psy13219 82 FKDRALSLQMVQRAERSGYSAI 103 (193)
Q Consensus 82 ~~dr~~~~~ll~RAe~AG~~Al 103 (193)
+.|.+..++|++.|+++|+.|+
T Consensus 13 ~G~~~~A~~lI~~A~~aGAdav 34 (327)
T TIGR03586 13 NGSLERALAMIEAAKAAGADAI 34 (327)
T ss_pred CChHHHHHHHHHHHHHhCCCEE
No 375
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=21.30 E-value=3.2e+02 Score=26.77 Aligned_cols=61 Identities=21% Similarity=0.210 Sum_probs=43.0
Q ss_pred eeccCccccHHHHHhhCCCCceEEEEEeec----------------CHHHHHHHHHHHHHcCCcEEEEeeccCC-CCCc
Q psy13219 54 ILSLMSTTSLEEVRAQNPSTTLWLQMYIFK----------------DRALSLQMVQRAERSGYSAIVITMDTAV-LGSR 115 (193)
Q Consensus 54 ~lst~ss~s~eei~~~~~~~~~wfQlY~~~----------------dr~~~~~ll~RAe~AG~~AlvvTVD~pv-~G~R 115 (193)
.-|+.|+.++.+|++....-.+++-++++. +++.....++-+++.|-..+++. |.|- .+||
T Consensus 424 lasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~-d~pGfi~NR 501 (714)
T TIGR02437 424 LASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYASKMGKTPIVVN-DCPGFFVNR 501 (714)
T ss_pred EEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHHHHHHcCCEEEEeC-CcccchHHH
Confidence 356677889999998764323344444432 67778888888899999888885 8875 4666
No 376
>COG4639 Predicted kinase [General function prediction only]
Probab=21.30 E-value=1.6e+02 Score=23.79 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=26.9
Q ss_pred ecCHHHHHHHHHHHHHcCCcEEEEeeccCC
Q psy13219 82 FKDRALSLQMVQRAERSGYSAIVITMDTAV 111 (193)
Q Consensus 82 ~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv 111 (193)
.-+|+..+.+++-|.+-||+-.++-.|+|.
T Consensus 78 n~rr~~r~~l~~La~~y~~~~~~ivfdtp~ 107 (168)
T COG4639 78 NLRREDRRKLIDLAKAYGYKIYAIVFDTPL 107 (168)
T ss_pred cCCHHHHHHHHHHHHHhCCeEEEEEEeCCH
Confidence 346788899999999999999999999996
No 377
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=21.28 E-value=90 Score=21.48 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=15.6
Q ss_pred HHHHHHHHHcCCcEEEEee
Q psy13219 89 LQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 89 ~~ll~RAe~AG~~AlvvTV 107 (193)
.+.++.|+++|+++++|-=
T Consensus 47 ~~k~~~a~~~GA~gvIi~~ 65 (101)
T PF02225_consen 47 DDKVRNAQKAGAKGVIIYN 65 (101)
T ss_dssp HHHHHHHHHTTESEEEEE-
T ss_pred HHHHHHHHHcCCEEEEEEe
Confidence 5677899999999998876
No 378
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=21.22 E-value=1.6e+02 Score=24.08 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=35.9
Q ss_pred CceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHH-HHcCCc
Q psy13219 50 DAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRA-ERSGYS 101 (193)
Q Consensus 50 g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RA-e~AG~~ 101 (193)
+..++.|..+-..+||+++..|+ ....+++..+.++....+++. ...|+.
T Consensus 119 ~p~ii~S~~GGvdIEeva~~~P~--~i~~~~id~~~g~~~~~~~~i~~~lg~~ 169 (202)
T PF08442_consen 119 GPVIIASKEGGVDIEEVAAENPE--KIIKFPIDPTEGLTPYQAREIAKKLGLP 169 (202)
T ss_dssp EEEEEEESSTSSTHHHHHHHSGG--GEEEEEEBTTTB--HHHHHHHHHHTTS-
T ss_pred ceEEEEeccCCccHHHHhhhChh--hEEEEecCCCCCCCHHHHHHHHHhcccc
Confidence 45567788899999999998885 456777877777877777775 456764
No 379
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.16 E-value=3.8e+02 Score=22.45 Aligned_cols=53 Identities=11% Similarity=0.099 Sum_probs=27.5
Q ss_pred ceeeeccCccccHHHHHhhC--CCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecc
Q psy13219 51 AIMILSLMSTTSLEEVRAQN--PSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDT 109 (193)
Q Consensus 51 ~~~~lst~ss~s~eei~~~~--~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~ 109 (193)
.|++++ ..-.++|++.... +....-+-....+|+++.+++ ++.|-+ +++.+|.
T Consensus 74 ~~v~vG-GGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~----~~~~~~-ivvslD~ 128 (241)
T PRK14114 74 EHIQIG-GGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFL----KEIDVE-PVFSLDT 128 (241)
T ss_pred CcEEEe-cCCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHH----HHhCCC-EEEEEEc
Confidence 466664 3446677665432 111112222234577665555 234544 8999996
No 380
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=21.16 E-value=4.5e+02 Score=21.24 Aligned_cols=63 Identities=14% Similarity=-0.024 Sum_probs=42.2
Q ss_pred HHHHHHHhccCceeeeccCccccHHHHHhhC-CCCceEEEEEeecCHH--HHHHHHHHHHHcCCcEE
Q psy13219 40 VATARAAGMMDAIMILSLMSTTSLEEVRAQN-PSTTLWLQMYIFKDRA--LSLQMVQRAERSGYSAI 103 (193)
Q Consensus 40 ~~~araA~~~g~~~~lst~ss~s~eei~~~~-~~~~~wfQlY~~~dr~--~~~~ll~RAe~AG~~Al 103 (193)
...++-....++|.++ ..+..+.+++.... .+...++|+-+.+--. ...++.+.|++.|.+..
T Consensus 135 ~~~~~L~~~~~~pIa~-dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~ 200 (229)
T cd00308 135 EGYAALRRRTGIPIAA-DESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVM 200 (229)
T ss_pred HHHHHHHhhCCCCEEe-CCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEe
Confidence 3455555677888877 66667777774321 2346789998877654 44578889999987653
No 381
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=21.13 E-value=4e+02 Score=22.53 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=40.3
Q ss_pred HHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEE-EeeccCCCCCc
Q psy13219 40 VATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIV-ITMDTAVLGSR 115 (193)
Q Consensus 40 ~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~Alv-vTVD~pv~G~R 115 (193)
.+++..+.+.++|++-.+.++..+.+ ....+.+|++. +.+......+++-++..|.+.+. |+-|.. .|..
T Consensus 80 ~a~~~~~~~~~ip~i~~~~~~~~l~~----~~~~~~~~r~~-p~~~~~~~a~~~~~~~~~~~~v~ii~~~~~-~g~~ 150 (350)
T cd06366 80 EFVAEVANEWNVPVLSFAATSPSLSS----RLQYPYFFRTT-PSDSSQNPAIAALLKKFGWRRVATIYEDDD-YGSG 150 (350)
T ss_pred HHHHHHhhcCCeeEEeccCCCccccc----cccCCceEEcc-cchHhHHHHHHHHHHHCCCcEEEEEEEcCc-ccch
Confidence 46778888899998765444433321 11234566665 44556666677777777765444 444443 4443
No 382
>PRK13938 phosphoheptose isomerase; Provisional
Probab=21.01 E-value=3.4e+02 Score=22.02 Aligned_cols=36 Identities=11% Similarity=0.139 Sum_probs=27.3
Q ss_pred CceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeec
Q psy13219 73 TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMD 108 (193)
Q Consensus 73 ~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD 108 (193)
+...+=+-....-..+.+.++.|++.|++.+.+|=.
T Consensus 114 ~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~ 149 (196)
T PRK13938 114 GDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGE 149 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 444554555556667888999999999999999964
No 383
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=21.00 E-value=1.4e+02 Score=25.18 Aligned_cols=77 Identities=25% Similarity=0.288 Sum_probs=39.3
Q ss_pred eCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEe-ecCHHHHHHHHHHHHH
Q psy13219 19 YRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYI-FKDRALSLQMVQRAER 97 (193)
Q Consensus 19 ~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~-~~dr~~~~~ll~RAe~ 97 (193)
+..||+. ..+.-+.-++..++.+++-.+..+.+......++++.+.... .-.+..+ -.+.+ -+++|.+
T Consensus 110 v~iPvl~-----kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~--lGl~~lvevh~~~----E~~~A~~ 178 (260)
T PRK00278 110 VSLPVLR-----KDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHS--LGLDVLVEVHDEE----ELERALK 178 (260)
T ss_pred cCCCEEe-----eeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHH--cCCeEEEEeCCHH----HHHHHHH
Confidence 4566664 222223336777777777777776666555566666544310 1122222 11222 2356677
Q ss_pred cCCcEEEEe
Q psy13219 98 SGYSAIVIT 106 (193)
Q Consensus 98 AG~~AlvvT 106 (193)
+|++-|.++
T Consensus 179 ~gadiIgin 187 (260)
T PRK00278 179 LGAPLIGIN 187 (260)
T ss_pred cCCCEEEEC
Confidence 777766653
No 384
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=20.98 E-value=1.6e+02 Score=20.55 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCcEEEEeeccCCCCCchhhhhcCCC
Q psy13219 87 LSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLKNKFT 124 (193)
Q Consensus 87 ~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d~r~~~~ 124 (193)
+.+.+++.+...|++.+.++++........-=.|.||.
T Consensus 75 ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~~Gf~ 112 (131)
T TIGR01575 75 LLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKKLGFN 112 (131)
T ss_pred HHHHHHHHHHHcCCCeEEEEEecccHHHHHHHHHcCCC
Confidence 44455556666689999999887644333333456663
No 385
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=20.88 E-value=2.6e+02 Score=22.66 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=41.5
Q ss_pred HHHHHHHhccC---ceeeeccCccccHHHHHhhCCCCceEEEEEeec--------------------CH-HHHHHHHHHH
Q psy13219 40 VATARAAGMMD---AIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFK--------------------DR-ALSLQMVQRA 95 (193)
Q Consensus 40 ~~~araA~~~g---~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~--------------------dr-~~~~~ll~RA 95 (193)
..+++.-.+.+ -..+++|++...++.+.+..|.-+.+|-..... -. ....++++++
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~ 197 (233)
T cd08582 118 EELLKLLKESGLLPEQIVIISFDAEALKRVRELAPTLETLWLRNYKSPKEDPRPLAKSGGAAGLDLSYEKKLNPAFIKAL 197 (233)
T ss_pred HHHHHHHHHcCCCCCCEEEEecCHHHHHHHHHHCCCCcEEEEeccCccccchhHHHHhhCceEEcccccccCCHHHHHHH
Confidence 34555555552 355778888778888877666433322111000 01 1345777888
Q ss_pred HHcCCcEEEEeeccC
Q psy13219 96 ERSGYSAIVITMDTA 110 (193)
Q Consensus 96 e~AG~~AlvvTVD~p 110 (193)
.++|.+..+-||+.+
T Consensus 198 ~~~G~~v~~wTvn~~ 212 (233)
T cd08582 198 RDAGLKLNVWTVDDA 212 (233)
T ss_pred HHCCCEEEEEeCCCH
Confidence 888888888888764
No 386
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=20.84 E-value=99 Score=26.74 Aligned_cols=24 Identities=21% Similarity=0.659 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHhcCCCCEEEec
Q psy13219 168 DDSVDWDDVRSLVQATKLPIVCKG 191 (193)
Q Consensus 168 ~~~~tW~di~wlr~~~~lPivlKG 191 (193)
.|.++|+-|+.|++..+.|+|+=|
T Consensus 180 ~p~L~~~~L~~i~~~~~vPLVlHG 203 (276)
T cd00947 180 EPKLDFDRLKEIAERVNVPLVLHG 203 (276)
T ss_pred CCccCHHHHHHHHHHhCCCEEEeC
Confidence 588999999999999999999987
No 387
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=20.78 E-value=4.8e+02 Score=23.92 Aligned_cols=94 Identities=19% Similarity=0.175 Sum_probs=49.5
Q ss_pred CCCCCcceEC-CceeCCceeecchhccccCCchHHHHHHHHHhccCceeeeccCccccHHHHHhhC------CCCceEEE
Q psy13219 6 CDRDSGLTVL-GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQN------PSTTLWLQ 78 (193)
Q Consensus 6 ~~~d~~t~~l-G~~~~~P~~iaP~g~~~l~~~~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~------~~~~~wfQ 78 (193)
+++|++|.+- +.++..||.-|||-. .-+.|++.+-|- ..|+- ++-. +.++|+-++.. .+. .--+
T Consensus 19 ~~~~~~~~~~~~~~l~~p~~s~~mdt----vTe~ema~~ma~-~gg~G-vI~~--n~~~e~q~~~V~~Vk~~~~~-~~~~ 89 (450)
T TIGR01302 19 DDVDLSTRITRNIKLNIPILSSPMDT----VTESRMAIAMAR-EGGIG-VIHR--NMSIEEQAEQVKRVKRAENG-IISD 89 (450)
T ss_pred cccccccccccccCcCCCeeecCCCc----cCHHHHHHHHHh-cCCCc-eeec--CCCHHHHHHHHhhhccccCc-eecC
Confidence 4678888876 788999999999753 235555444222 11222 2221 34554433221 111 0001
Q ss_pred E-EeecCHHHHHHHHHHHHHcCCcEEEEeecc
Q psy13219 79 M-YIFKDRALSLQMVQRAERSGYSAIVITMDT 109 (193)
Q Consensus 79 l-Y~~~dr~~~~~ll~RAe~AG~~AlvvTVD~ 109 (193)
+ .+..| .-..+.++...+.+++.+.|+=|.
T Consensus 90 ~vtl~~~-~tv~eal~~m~~~~~s~lpVvd~~ 120 (450)
T TIGR01302 90 PVTISPE-TTVADVLELMERKGISGIPVVEDG 120 (450)
T ss_pred ceEeCCC-CCHHHHHHHHHHcCCCEEEEEeCC
Confidence 1 22222 233455666677899999887553
No 388
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=20.77 E-value=1.2e+02 Score=26.08 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=29.7
Q ss_pred EEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCCCchhh
Q psy13219 79 MYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRD 118 (193)
Q Consensus 79 lY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G~Re~d 118 (193)
||++.++. +++++|..+|+.++++.+--.+.......
T Consensus 7 LfvP~~~~---~~~~ka~~~gaD~vilDLEDav~~~~k~~ 43 (288)
T TIGR01588 7 MFVPGNNP---AMISDAFIYGADSVMFDLEDAVSLAEKDS 43 (288)
T ss_pred eecCCCCH---HHHHhhhhcCCCEEEEecccCCCcchHHH
Confidence 79999886 46788999999999999987777555444
No 389
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=20.71 E-value=2.6e+02 Score=24.21 Aligned_cols=67 Identities=12% Similarity=0.200 Sum_probs=39.6
Q ss_pred HHHHHHHhcc--CceeeeccCccccHH-------HHHhhCCCCceEEEEEe-----ecCHHHHHHHHHHHHHcCCcEEEE
Q psy13219 40 VATARAAGMM--DAIMILSLMSTTSLE-------EVRAQNPSTTLWLQMYI-----FKDRALSLQMVQRAERSGYSAIVI 105 (193)
Q Consensus 40 ~~~araA~~~--g~~~~lst~ss~s~e-------ei~~~~~~~~~wfQlY~-----~~dr~~~~~ll~RAe~AG~~Alvv 105 (193)
..+++.+++. .+..++|+....... ++..... +..|.|+|- ..|+++.+++.+.++++|+.+..+
T Consensus 40 ~~~~~~i~~~~Pd~IVViSpHw~~~~~~~~~~~p~~~G~~~-~~~~p~~~~~~~~~~gd~eLA~~i~~~~~~~Gi~~~~~ 118 (294)
T cd07372 40 ERARESIEALKPDVLLVHSPHWITSVGHHFLGVPELSGRSV-DPIFPNLFRYDFSMNVDVELAEACCEEGRKAGLVTKMM 118 (294)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccccCeeeecCCccccccc-ccccccceeeccCCCCCHHHHHHHHHHHHHCCCCeeec
Confidence 3445555544 688888877432221 1111111 112334433 469999999999999999988764
Q ss_pred ee
Q psy13219 106 TM 107 (193)
Q Consensus 106 TV 107 (193)
+.
T Consensus 119 ~~ 120 (294)
T cd07372 119 RN 120 (294)
T ss_pred cC
Confidence 43
No 390
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=20.63 E-value=1.2e+02 Score=23.24 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEee
Q psy13219 84 DRALSLQMVQRAERSGYSAIVITM 107 (193)
Q Consensus 84 dr~~~~~ll~RAe~AG~~AlvvTV 107 (193)
|.+..+++++++.++|+.+|+++-
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g 34 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP 34 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH
Confidence 667777777777777777777764
No 391
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=20.57 E-value=5.6e+02 Score=22.10 Aligned_cols=73 Identities=7% Similarity=-0.026 Sum_probs=41.5
Q ss_pred CCchHHHHHHHHHhccCcee--eeccCc---cccHHHH-------HhhCC-CCceEEEEEeecCHHHHHHHHHHHHHcCC
Q psy13219 34 AHADGEVATARAAGMMDAIM--ILSLMS---TTSLEEV-------RAQNP-STTLWLQMYIFKDRALSLQMVQRAERSGY 100 (193)
Q Consensus 34 ~~~~gE~~~araA~~~g~~~--~lst~s---s~s~eei-------~~~~~-~~~~wfQlY~~~dr~~~~~ll~RAe~AG~ 100 (193)
++.++=..+.+-..+.|+-- +.+|.+ +.|.||- .+... ..+...++. ..+-+.+.++.+.|+++|+
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~-~~~t~~ai~~a~~A~~~Ga 104 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGAT-TLNTRDTIARTRALLDLGA 104 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEec-cCCHHHHHHHHHHHHHhCC
Confidence 34444445555555566443 334433 3444433 22222 234444443 2355677889999999999
Q ss_pred cEEEEee
Q psy13219 101 SAIVITM 107 (193)
Q Consensus 101 ~AlvvTV 107 (193)
.+++++-
T Consensus 105 d~vlv~~ 111 (309)
T cd00952 105 DGTMLGR 111 (309)
T ss_pred CEEEECC
Confidence 9999886
No 392
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.57 E-value=3.6e+02 Score=23.49 Aligned_cols=63 Identities=13% Similarity=0.118 Sum_probs=44.5
Q ss_pred HHHHHHHhccCceeeeccCccccHHHHHhhCC-CCceEEEEEeecCHH--HHHHHHHHHHHcCCcEE
Q psy13219 40 VATARAAGMMDAIMILSLMSTTSLEEVRAQNP-STTLWLQMYIFKDRA--LSLQMVQRAERSGYSAI 103 (193)
Q Consensus 40 ~~~araA~~~g~~~~lst~ss~s~eei~~~~~-~~~~wfQlY~~~dr~--~~~~ll~RAe~AG~~Al 103 (193)
..+++-+.+.++|.++.- +..+++++..... +....+|+-+.+--. ...++.+.|+++|.+..
T Consensus 218 ~~~~~l~~~~~~pia~dE-s~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~ 283 (354)
T cd03317 218 IDHAELQKLLKTPICLDE-SIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVW 283 (354)
T ss_pred HHHHHHHhhcCCCEEeCC-ccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEE
Confidence 355666677889987754 6677777765532 345689998877654 44688999999999753
No 393
>PRK09701 D-allose transporter subunit; Provisional
Probab=20.55 E-value=3e+02 Score=23.11 Aligned_cols=15 Identities=7% Similarity=-0.050 Sum_probs=8.2
Q ss_pred HHHHHHHhccCceee
Q psy13219 40 VATARAAGMMDAIMI 54 (193)
Q Consensus 40 ~~~araA~~~g~~~~ 54 (193)
.++.++|.+.|.-..
T Consensus 44 ~gi~~~a~~~g~~v~ 58 (311)
T PRK09701 44 KGIEDEAKTLGVSVD 58 (311)
T ss_pred HHHHHHHHHcCCeEE
Confidence 355555666665443
No 394
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=20.49 E-value=1.6e+02 Score=16.83 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEe
Q psy13219 86 ALSLQMVQRAERSGYSAIVIT 106 (193)
Q Consensus 86 ~~~~~ll~RAe~AG~~AlvvT 106 (193)
.....+++.+.+.|+..+.++
T Consensus 45 ~~~~~~~~~~~~~~~~~v~~~ 65 (65)
T cd04301 45 ALLEAAEEEARERGAKRLRLE 65 (65)
T ss_pred HHHHHHHHHHHHcCCcEEEeC
Confidence 455667788888899988764
No 395
>TIGR03854 F420_MSMEG_3544 probable F420-dependent oxidoreductase, MSMEG_3544 family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes a small family, closely related to other such families in the putative F420-binding region, exemplified by MSMEG_3544 in Mycobacterium smegmatis.
Probab=20.45 E-value=1.2e+02 Score=25.90 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=21.7
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeecc
Q psy13219 83 KDRALSLQMVQRAERSGYSAIVITMDT 109 (193)
Q Consensus 83 ~dr~~~~~ll~RAe~AG~~AlvvTVD~ 109 (193)
.+.+...++.++||++||.++++. |.
T Consensus 10 ~~~~~~~~~a~~AE~~Gfd~~w~~-eh 35 (290)
T TIGR03854 10 VAPAELPAIVDRLESTGVDSLWLS-EL 35 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEec-cc
Confidence 367778889999999999999875 54
No 396
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=20.39 E-value=3.6e+02 Score=23.07 Aligned_cols=69 Identities=20% Similarity=0.138 Sum_probs=51.8
Q ss_pred HHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHH-cC-CcEEEEeec
Q psy13219 40 VATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAER-SG-YSAIVITMD 108 (193)
Q Consensus 40 ~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~-AG-~~AlvvTVD 108 (193)
.++||.-.+.|..+++.--...-||+++...+.+....+..=-.|++.++++++.+.+ -| ...||-+.=
T Consensus 20 ~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDiLvNNAG 90 (246)
T COG4221 20 EATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDILVNNAG 90 (246)
T ss_pred HHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccEEEecCC
Confidence 5899999999999999988888999999887633344444456799999999987654 44 666655443
No 397
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=20.34 E-value=3.3e+02 Score=22.12 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=37.6
Q ss_pred ccHHHHHhh-----CCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeecc
Q psy13219 61 TSLEEVRAQ-----NPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDT 109 (193)
Q Consensus 61 ~s~eei~~~-----~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~ 109 (193)
++.|+|.+. +..|...+-+-...+...+.+-++.|++-|.+.|++|=..
T Consensus 93 y~yd~vFsRqveA~g~~GDvLigISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~ 146 (176)
T COG0279 93 YGYDEVFSRQVEALGQPGDVLIGISTSGNSKNVLKAIEAAKEKGMTVIALTGKD 146 (176)
T ss_pred ccHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCEEEEEecCC
Confidence 456666422 2345567788888888888999999999999999999653
No 398
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=20.34 E-value=95 Score=26.45 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=19.1
Q ss_pred CHHHHHHHHhcCCCCEEEecC
Q psy13219 172 DWDDVRSLVQATKLPIVCKGI 192 (193)
Q Consensus 172 tW~di~wlr~~~~lPivlKGI 192 (193)
+++|++.+|+..++||+-|+.
T Consensus 90 s~~~l~~v~~~v~~PvL~KDF 110 (247)
T PRK13957 90 SLEDLKSVSSELKIPVLRKDF 110 (247)
T ss_pred CHHHHHHHHHhcCCCEEeccc
Confidence 679999999999999999974
No 399
>PRK09389 (R)-citramalate synthase; Provisional
Probab=20.34 E-value=6.6e+02 Score=23.43 Aligned_cols=47 Identities=9% Similarity=0.020 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeec
Q psy13219 37 DGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFK 83 (193)
Q Consensus 37 ~gE~~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~ 83 (193)
.+|....+...+.+..-.+..++....++|..+...+..++.+|...
T Consensus 50 ~~d~e~v~~i~~~~~~~~i~a~~r~~~~di~~a~~~g~~~v~i~~~~ 96 (488)
T PRK09389 50 EGEREAIKAVTDEGLNAEICSFARAVKVDIDAALECDVDSVHLVVPT 96 (488)
T ss_pred HHHHHHHHHHHhcCCCcEEEeecccCHHHHHHHHhCCcCEEEEEEcc
Confidence 34444444444443333333333333444443332233445555543
No 400
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=20.30 E-value=3.9e+02 Score=22.22 Aligned_cols=61 Identities=11% Similarity=0.086 Sum_probs=33.4
Q ss_pred HHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeec
Q psy13219 42 TARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMD 108 (193)
Q Consensus 42 ~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD 108 (193)
++..+.+.++|++..+.++..+ .. ...+..|+++. .+......+++.+.+.|++-+++-.+
T Consensus 84 ~~~~~~~~~iP~i~~~~~~~~~---~~--~~~~~~~~~~~-~~~~~~~~~~~~l~~~g~~~v~~l~~ 144 (336)
T cd06326 84 ALPLLEEAGVPLVGPFTGASSL---RD--PPDRNVFNVRA-SYADEIAAIVRHLVTLGLKRIAVFYQ 144 (336)
T ss_pred HHHHHHHcCCeEEEecCCcHHh---cC--CCCCceEEeCC-ChHHHHHHHHHHHHHhCCceEEEEEe
Confidence 3344555666666543222111 11 11234566653 45666777888888888877655544
No 401
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.18 E-value=2.6e+02 Score=23.05 Aligned_cols=64 Identities=17% Similarity=0.045 Sum_probs=42.6
Q ss_pred HHHHHHhccCceeeeccCccccHHHHHhhCCCCceEEEEEeecCHHHHHHHHHHHHHcCCcEEEEeeccCCCC
Q psy13219 41 ATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLG 113 (193)
Q Consensus 41 ~~araA~~~g~~~~lst~ss~s~eei~~~~~~~~~wfQlY~~~dr~~~~~ll~RAe~AG~~AlvvTVD~pv~G 113 (193)
..++.|.++|.-|++|-..+..+=+.+.... -.|++.--.-++ +.+|.++|++.+-+ .|+-..|
T Consensus 78 ~~a~~a~~aGA~FivsP~~~~~vi~~a~~~~------i~~iPG~~TptE--i~~a~~~Ga~~vKl-FPa~~~g 141 (212)
T PRK05718 78 EQLAQAIEAGAQFIVSPGLTPPLLKAAQEGP------IPLIPGVSTPSE--LMLGMELGLRTFKF-FPAEASG 141 (212)
T ss_pred HHHHHHHHcCCCEEECCCCCHHHHHHHHHcC------CCEeCCCCCHHH--HHHHHHCCCCEEEE-ccchhcc
Confidence 6788999999999999876664433333321 235555333343 78899999999888 6654443
No 402
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=20.18 E-value=4.9e+02 Score=22.02 Aligned_cols=40 Identities=8% Similarity=-0.042 Sum_probs=22.2
Q ss_pred HHHHHhhCCCCceEEEEEeec-CHHHHHHHHHHHHHcCCcE
Q psy13219 63 LEEVRAQNPSTTLWLQMYIFK-DRALSLQMVQRAERSGYSA 102 (193)
Q Consensus 63 ~eei~~~~~~~~~wfQlY~~~-dr~~~~~ll~RAe~AG~~A 102 (193)
.++|..+...+..|+-++.+. |-+...+.++.|++.|++.
T Consensus 94 ~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v 134 (275)
T cd07937 94 ELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHV 134 (275)
T ss_pred HHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeE
Confidence 344443333345566666543 4456666777777777543
No 403
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=20.04 E-value=2.9e+02 Score=23.42 Aligned_cols=65 Identities=23% Similarity=0.245 Sum_probs=33.7
Q ss_pred HHHHHHHhcc--CceeeeccCcc-ccHHHHH---hhCCCCceEEEEEe-----ecC----HHHHHHHHHHHHHcCCc--E
Q psy13219 40 VATARAAGMM--DAIMILSLMST-TSLEEVR---AQNPSTTLWLQMYI-----FKD----RALSLQMVQRAERSGYS--A 102 (193)
Q Consensus 40 ~~~araA~~~--g~~~~lst~ss-~s~eei~---~~~~~~~~wfQlY~-----~~d----r~~~~~ll~RAe~AG~~--A 102 (193)
..++++|-++ |.+++-|-.+. ...+++. +..+ .+ ..=+.. +++ .+..++++++|+++|+. -
T Consensus 79 ~~v~eaaL~~~~G~~iINsIs~~~~~~~~~~~l~~~~g-~~-vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~ 156 (261)
T PRK07535 79 PAAIEAGLKVAKGPPLINSVSAEGEKLEVVLPLVKKYN-AP-VVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPED 156 (261)
T ss_pred HHHHHHHHHhCCCCCEEEeCCCCCccCHHHHHHHHHhC-CC-EEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhH
Confidence 3556666665 87777775542 2344442 2221 11 111111 111 25667788889999984 5
Q ss_pred EEEe
Q psy13219 103 IVIT 106 (193)
Q Consensus 103 lvvT 106 (193)
|++.
T Consensus 157 IilD 160 (261)
T PRK07535 157 IYID 160 (261)
T ss_pred EEEe
Confidence 5553
No 404
>TIGR03560 F420_Rv1855c probable F420-dependent oxidoreductase, Rv1855c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by Rv1855c from Mycobacterium tuberculosis.
Probab=20.02 E-value=1.2e+02 Score=24.87 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=22.3
Q ss_pred ecCHHHHHHHHHHHHHcCCcEEEEeecc
Q psy13219 82 FKDRALSLQMVQRAERSGYSAIVITMDT 109 (193)
Q Consensus 82 ~~dr~~~~~ll~RAe~AG~~AlvvTVD~ 109 (193)
..+-+...++++.||++||..+++. |.
T Consensus 9 ~~~~~~~~~~a~~AE~~Gfd~vw~~-eh 35 (227)
T TIGR03560 9 QQLYPDLLAVARAAEDAGFDALFRS-DH 35 (227)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEc-hh
Confidence 3456778899999999999999987 54
Done!