RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13219
(193 letters)
>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 359
Score = 93.8 bits (232), Expect = 1e-23
Identities = 82/190 (43%), Positives = 117/190 (61%), Gaps = 10/190 (5%)
Query: 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
++ +V + D T+LG + P+ IAP+AMQK+AH +GE ATARAA IM LS +T
Sbjct: 51 ILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWAT 110
Query: 61 TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
+S+EEV + P + Q+Y++KDR + Q+V+RAER+G+ AI +T+DT LG R D+K
Sbjct: 111 SSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIK 169
Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
N+F +PP+L+L NF + D + SGL+ YVA Q D S+ W DV L
Sbjct: 170 NRFVLPPFLTLKNFEGIDLGKMD---------KANDSGLSSYVAGQIDRSLSWKDVAWLQ 220
Query: 181 QATKLPIVCK 190
T LPI+ K
Sbjct: 221 TITSLPILVK 230
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 414
Score = 88.8 bits (219), Expect = 1e-21
Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 20/195 (10%)
Query: 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAH---ADGEVATARAAGMMDAIMILSL 57
++ +V D +LG+ P ++ +A+ KL + + +VA G+ ++S
Sbjct: 73 ILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMIST 132
Query: 58 MSTTSLEEVR--AQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSR 115
+++ S EE+ A + W Q+Y+ DR ++ +V+ E+ G A+ +T+D LG R
Sbjct: 133 LASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQR 192
Query: 116 YRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDD 175
+D+K KF+ A + + E S G + ++ D S+ W D
Sbjct: 193 EKDMKLKFSNTKAGPKAMKK---------------TNVEESQGASRALSKFIDPSLTWKD 237
Query: 176 VRSLVQATKLPIVCK 190
+ L + TKLPIV K
Sbjct: 238 IEELKKKTKLPIVIK 252
>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 349
Score = 85.7 bits (211), Expect = 1e-20
Identities = 61/190 (32%), Positives = 96/190 (50%), Gaps = 16/190 (8%)
Query: 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
+R++ D+ T+ G P+ I+P+A +A DGE +TARAA + ++S ++
Sbjct: 50 YLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYAS 109
Query: 61 TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
SLE++ A P W Q+Y+ D + QMVQRAE G+ A+VIT+DT VLG+R RD +
Sbjct: 110 YSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKR 169
Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
N+ + + L + R LK+ + S W+D+ L
Sbjct: 170 NQLNLEANILLKDLRALKEEKP----------------TQSVPVSFPKASFCWNDLSLLQ 213
Query: 181 QATKLPIVCK 190
T+LPI+ K
Sbjct: 214 SITRLPIILK 223
>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate
dehydrogenase {Pseudomonas putida [TaxId: 303]}
Length = 353
Score = 76.2 bits (186), Expect = 3e-17
Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 11/192 (5%)
Query: 1 MMRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST 60
+ +V R VLG R P+ I P+ + G++A ARAA +LS S
Sbjct: 50 RLVDVSRRSLQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASN 109
Query: 61 TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYRDLK 120
S+E++ Q R ++ MV +A +GY+ +V+T D AV G R RDL
Sbjct: 110 MSIEDLARQCD--GDLWFQLYVIHREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLH 167
Query: 121 NKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 180
N+F +PP+L+L NF + D + ++ Q D S +W+ +R L
Sbjct: 168 NRFKIPPFLTLKNFEGIDLGKMD---------KANLEMQAALMSRQMDASFNWEALRWLR 218
Query: 181 QATKLPIVCKGI 192
++ KG+
Sbjct: 219 DLWPHKLLVKGL 230
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase
{Bacillus subtilis [TaxId: 1423]}
Length = 329
Score = 68.3 bits (166), Expect = 1e-14
Identities = 14/133 (10%), Positives = 34/133 (25%), Gaps = 6/133 (4%)
Query: 3 RNVCDRDSGLTVLGTRYRCPVGIAP-SAMQKLAHADGEVATARAAGMMDAIMILSLMSTT 61
+ D + P+ I + + + ARAA + + +
Sbjct: 18 LALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSA 77
Query: 62 SLEEVRAQNPSTT-----LWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRY 116
+ + L A + Q + E G +A+ I ++
Sbjct: 78 LKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMP 137
Query: 117 RDLKNKFTMPPYL 129
++ +
Sbjct: 138 EGDRSFSGALKRI 150
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase
{Thermus thermophilus [TaxId: 274]}
Length = 310
Score = 64.1 bits (155), Expect = 4e-13
Identities = 27/187 (14%), Positives = 46/187 (24%), Gaps = 8/187 (4%)
Query: 4 NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSL 63
+ + D LG + P I + +A A AA + M+L
Sbjct: 20 ALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRILLE 79
Query: 64 EE-------VRAQNPSTTLWLQMYIFKDRALSLQMVQRA-ERSGYSAIVITMDTAVLGSR 115
VR P L + + + R + R E A+ ++ +
Sbjct: 80 RPEALRSFRVRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQ 139
Query: 116 YRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDDSVDWDD 175
D + + L E +A V W
Sbjct: 140 RGDTDFRGLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWAR 199
Query: 176 VRSLVQA 182
V V+
Sbjct: 200 VEEWVRF 206
>d2e9xb1 a.278.1.2 (B:62-173) DNA replication complex GINS protein
PSF2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 112
Score = 29.8 bits (67), Expect = 0.082
Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 126 PPYLSLANFRNLKQHNEDISKFRDISAE---ECSSGLTDYVANQFDDSVDWDDVRSLVQ 181
P ++ + ++ H F + + E + L ++ + D+ D++R+LV+
Sbjct: 2 PEWMDVEKLEKMRDHERKEETFTPMPSPYYMELTKLLLNHAS---DNIPKADEIRTLVK 57
>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 350
Score = 27.1 bits (59), Expect = 1.6
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 6/54 (11%)
Query: 116 YRDLKNKFTMPPYLSLANFRNLKQHNEDISKFRDISAEECSSGLTDYVANQFDD 169
+ + + P++ K D S F D EE + + +F +
Sbjct: 302 WIAIYQRKVEAPFIP-----KFK-GPGDTSNFDDYEEEEIRVSINEKCGKEFTE 349
>d1unfx2 d.44.1.1 (X:105-238) Fe superoxide dismutase (FeSOD)
{Cowpea (Vigna unguiculata) [TaxId: 3917]}
Length = 134
Score = 26.2 bits (57), Expect = 1.7
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 161 DYVANQFDDSVDWDDV-RSLVQATKLP 186
DY++ D V WD V L QA L
Sbjct: 107 DYISVFMDKLVSWDAVSSRLEQAKALS 133
>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli
[TaxId: 562]}
Length = 244
Score = 26.5 bits (57), Expect = 2.1
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 90 QMVQRAERSGYSAIVIT 106
+ +A++ G IT
Sbjct: 21 DYIAQAKQKGIKLFAIT 37
>d2g3ba2 a.121.1.1 (A:74-189) Putative transcriptional regulator
{Rhodococcus sp. rha1 [TaxId: 101510]}
Length = 116
Score = 25.0 bits (54), Expect = 4.3
Identities = 5/37 (13%), Positives = 12/37 (32%)
Query: 33 LAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQ 69
D + +++ + L S E+ R+
Sbjct: 70 SRSLDPQPTAVTMTALVEGLSGRWLCKEISTEDARSH 106
>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1
{House-dust mite (Dermatophagoides pteronyssinus)
[TaxId: 6956]}
Length = 302
Score = 25.4 bits (54), Expect = 4.8
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 131 LANFRNLKQHNEDISKFRDISAEE 154
L + + ++ + I+ D+S +E
Sbjct: 30 LESVKYVQSNGGAINHLSDLSLDE 53
>d1my6a2 d.44.1.1 (A:89-198) Fe superoxide dismutase (FeSOD)
{Thermosynechococcus elongatus [TaxId: 146786]}
Length = 110
Score = 24.5 bits (53), Expect = 5.1
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 161 DYVANQFDDSVDWDDVRSLVQA 182
D++ N + V+WD V + A
Sbjct: 89 DFIDNFLNQLVNWDFVAKNLAA 110
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of
malonyl-CoA ACP transacylase FabD {Streptomyces
coelicolor A3(2) [TaxId: 100226]}
Length = 253
Score = 24.9 bits (53), Expect = 6.5
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 25 IAPSAMQKLAHADGEVATARAAGMMDA 51
P A+ H+ GE+ A AG++D
Sbjct: 89 FTPGAV--AGHSVGEITAAVFAGVLDD 113
>d2a90a2 d.289.1.1 (A:132-211) Deltex (Dx) {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 80
Score = 23.8 bits (51), Expect = 7.3
Identities = 8/28 (28%), Positives = 9/28 (32%)
Query: 123 FTMPPYLSLANFRNLKQHNEDISKFRDI 150
T NF NL Q + R I
Sbjct: 41 NTHIGLPYTINFSNLTQLRQPSGPMRSI 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.132 0.382
Gapped
Lambda K H
0.267 0.0559 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 679,880
Number of extensions: 27820
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 20
Length of query: 193
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 112
Effective length of database: 1,295,466
Effective search space: 145092192
Effective search space used: 145092192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.4 bits)