RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1322
(231 letters)
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 65.1 bits (159), Expect = 4e-13
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 13/111 (11%)
Query: 91 LFLHGFPESWYIWKHQMTEFSHEYWTVAVD---------IKTNFRTIADRYFLVDSLKVF 141
+ LHG S W+ + Y +A D ++ D L
Sbjct: 2 VLLHGAGGSAESWRPLAEALAAGYRVLAPDLPGHGDSDGPPRTPYSLED---DAADLAAL 58
Query: 142 LDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINAPHPAVFKQELR 192
LD LG +L+G GG++ + + PE V +++ +P ++ L
Sbjct: 59 LDALGLGPVVLVGHSLGGAVALAAAARRPER-VAGLVLISPPLRDLEELLA 108
Score = 32.0 bits (73), Expect = 0.17
Identities = 12/104 (11%), Positives = 34/104 (32%), Gaps = 12/104 (11%)
Query: 8 NRCILIGRDFGGSLVWSFLDKYPELVVKSIIINAPHPAVFKQELKKMSQLIKTRFLLSRT 67
+L+G GG++ + + PE V +++ +P ++ L +
Sbjct: 65 GPVVLVGHSLGGAVALAAAARRPER-VAGLVLISPPLRDLEELLAADAA---------AL 114
Query: 68 IGAFHENVHFNFVSAGSPKNPL-MLFLHGFPESWYIWKHQMTEF 110
+ + + + + +L +HG + +
Sbjct: 115 LALLRAALLDADLREALARLTVPVLVIHG-EDDPLVPPEAARRL 157
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
hydrolase superfamily) [General function prediction
only].
Length = 282
Score = 60.8 bits (146), Expect = 5e-11
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 6/113 (5%)
Query: 79 FVSAGSPKNPLMLFLHGFPESWYIWKHQMTEFSHE---YWTVAVDI---KTNFRTIADRY 132
P ++ LHGFP S +W+ Y +A D+ +
Sbjct: 13 AYREAGGGGPPLVLLHGFPGSSSVWRPVFKVLPALAARYRVIAPDLRGHGRSDPAGYSLS 72
Query: 133 FLVDSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINAPHPA 185
D L LD LG + +L+G GG++ + ++P+ V ++I P
Sbjct: 73 AYADDLAALLDALGLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPPP 125
Score = 31.1 bits (69), Expect = 0.46
Identities = 19/145 (13%), Positives = 37/145 (25%), Gaps = 13/145 (8%)
Query: 9 RCILIGRDFGGSLVWSFLDKYPELVVKSIIINAPHPAVFKQELKKMSQLIKTRFLLSRTI 68
+ +L+G GG++ + ++P+ V+ +++ P P E +
Sbjct: 89 KVVLVGHSMGGAVALALALRHPDR-VRGLVLIGPAPPPGLLEAALRQPAGAAPLAALADL 147
Query: 69 GAFHENVHFNFVSAGSPKNPLMLFLHGFPESWYIWKHQMTEFSHEYWTVAVDIKTNFRTI 128
G L + + +
Sbjct: 148 L------------LGLDAAAFAALLAALGLLAALAAAARAGLAEALRAPLLGAAAAAFAR 195
Query: 129 ADRYFLVDSLKVFLDHLGRNRCILI 153
A R L +L LD R I
Sbjct: 196 AARADLAAALLALLDRDLRAALARI 220
>gnl|CDD|178633 PLN03084, PLN03084, alpha/beta hydrolase fold protein; Provisional.
Length = 383
Score = 52.2 bits (125), Expect = 6e-08
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 13/115 (11%)
Query: 79 FVSAGSPKNPLMLFLHGFPESWYIWKHQMTEFSHEYWTVAVD-----------IKTNFRT 127
V +GS NP +L +HGFP Y ++ + S Y +A D F
Sbjct: 119 CVESGSNNNPPVLLIHGFPSQAYSYRKVLPVLSKNYHAIAFDWLGFGFSDKPQPGYGFNY 178
Query: 128 IADRYFLVDSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINAP 182
D Y V SL+ +D L ++ L+ + + V + +P+ + K I++N P
Sbjct: 179 TLDEY--VSSLESLIDELKSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPP 231
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 43.3 bits (102), Expect = 4e-05
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 134 LVDSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINAPHPAVFKQELR 192
L + L+ LD LG ++ L+G GG + ++ KYP+ V +++ HPA L
Sbjct: 28 LAEDLEALLDALGLDKVNLVGHSMGGLIALAYAAKYPDRVKALVLVGTVHPAGLSSPLT 86
Score = 38.7 bits (90), Expect = 0.001
Identities = 26/133 (19%), Positives = 43/133 (32%), Gaps = 7/133 (5%)
Query: 11 ILIGRDFGGSLVWSFLDKYPELVVKSIIINAPHPAVFK-----QELKKMSQLIKTRFLLS 65
L+G GG + ++ KYP+ V +++ HPA + L L
Sbjct: 45 NLVGHSMGGLIALAYAAKYPDRVKALVLVGTVHPAGLSSPLTPRGNLLGLLLDNFFNRLY 104
Query: 66 RTIGAFHENVHFNFVSAGSPKNPLMLFLHGFPESWYIWKHQMTEFSHEYWTVAVDIKTNF 125
++ A F + G P + FL F S I +
Sbjct: 105 DSVEALLGRAIKQFQALGRP--FVSDFLKQFELSSLIRFGETLALDGLLGYALGYDLVWD 162
Query: 126 RTIADRYFLVDSL 138
R+ A + V +L
Sbjct: 163 RSAALKDIDVPTL 175
>gnl|CDD|234315 TIGR03695, menH_SHCHC,
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase. This protein catalyzes the formation of
SHCHC, or (1 R,6
R)-2-succinyl-6-hydroxy-2,
4-cyclohexadiene-1-carboxylate, by elmination of
pyruvate from
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylate (SEPHCHC). Note that SHCHC synthase activity
previously was attributed to MenD, which in fact is
SEPHCHC synthase [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 252
Score = 41.0 bits (97), Expect = 2e-04
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 19/118 (16%)
Query: 88 PLMLFLHGFPESWYIWKHQMTEFSHEYWTVAVDI-------------KTNFRTIADRYFL 134
P+++FLHGF S W+ + + +A+D+ + +F IA
Sbjct: 3 PVLVFLHGFLGSGADWQALIELLGPHFRCLAIDLPGHGSSQSPSDIERYDFEEIAQ---- 58
Query: 135 VDSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINAPHPAVFKQELR 192
L LD LG L+G GG + + +YPE V I+ + P + +E R
Sbjct: 59 -LLLATLLDQLGIEPFFLVGYSMGGRIALYYALQYPERVQGLILESG-SPGLATEEER 114
>gnl|CDD|211851 TIGR03611, RutD, pyrimidine utilization protein D. This protein is
observed in operons extremely similar to that
characterized in E. coli K-12 responsible for the import
and catabolism of pyrimidines, primarily uracil. This
protein is a member of the hydrolase, alpha/beta fold
family defined by pfam00067.
Length = 248
Score = 38.9 bits (91), Expect = 0.001
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 11/107 (10%)
Query: 88 PLMLFLHGFPESWYIWKHQMTEFSHEYWTVAVDIK---TNFRTIADRY---FLVDSLKVF 141
P+++ G S W Q+ + + V D + + + Y + D +
Sbjct: 13 PVVVLSSGLGGSGSYWAPQLAVLTQRFHVVTYDHRGTGRSPGELPPDYSIAHMADDVLQL 72
Query: 142 LDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINA-----PH 183
LD LG R +G GG + YPE + ++IN PH
Sbjct: 73 LDALGIERFHFVGHALGGLIGLQLALDYPERLTSLVLINGWSRPDPH 119
>gnl|CDD|235135 PRK03592, PRK03592, haloalkane dehalogenase; Provisional.
Length = 295
Score = 38.8 bits (91), Expect = 0.001
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 15/117 (12%)
Query: 65 SRTIGAFHENVHFNFVSAGSPKNPLMLFLHGFPESWYIWKHQMTEFSHEYWTVAVDI--- 121
R + + + G P ++FLHG P S Y+W++ + + +A D+
Sbjct: 9 MRRVEVLGSRMAYIETGEGDP----IVFLHGNPTSSYLWRNIIPHLAGLGRCLAPDLIGM 64
Query: 122 ----KTNFRTIADRYF-LVDSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELV 173
K + I + L + D LG + +L+G D+G +L + + ++P+ V
Sbjct: 65 GASDKPD---IDYTFADHARYLDAWFDALGLDDVVLVGHDWGSALGFDWAARHPDRV 118
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This family
contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 34.7 bits (80), Expect = 0.015
Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 7/111 (6%)
Query: 89 LMLFLHGFPESWYIWKHQMTEFSHEYWTVAVDIKTNFRTIADRYFLVDSLKVFLDHLGR- 147
L++ LHG + + + V ++ + L
Sbjct: 1 LVVLLHGAGGDPEAYAPLARALASRGYNVVA---VDYPGHGAS-LGAPDAEAVLADAPLD 56
Query: 148 -NRCILIGRDFGGSLVWSFLDKYPELVVKSIIINAPHPAVFKQELRGLIVP 197
R +L+G GG + + P V ++++ A P +L L VP
Sbjct: 57 PERIVLVGHSLGGGVALLLAARDPR-VKAAVVLAAGDPPDALDDLAKLTVP 106
>gnl|CDD|132100 TIGR03056, bchO_mg_che_rel, putative magnesium chelatase accessory
protein. Members of this family belong to the
alpha/beta fold family hydrolases (pfam00561). Members
are found in bacterial genomes if and only if they
encoded for anoxygenic photosynthetic systems similar to
that of Rhodobacter capsulatus and other
alpha-Proteobacteria. Members often are encoded in the
same operon as subunits of the protoporphyrin IX
magnesium chelatase, and were once designated BchO. No
literature supports a role as an actual subunit of
magnesium chelatase, but an accessory role is possible,
as suggested by placement by its probable hydrolase
activity [Energy metabolism, Photosynthesis].
Length = 278
Score = 35.3 bits (81), Expect = 0.019
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 10/102 (9%)
Query: 66 RTIGAFHENVHFNFVSAGSPKNPLMLFLHGFPESWYIWKHQMTEFSHEYWTVAVDIKTNF 125
T+G FH +V G PL+L LHG S + W+ M + + VA D+ +
Sbjct: 11 VTVGPFHWHV----QDMGPTAGPLLLLLHGTGASTHSWRDLMPPLARSFRVVAPDLPGHG 66
Query: 126 RTIADRYF------LVDSLKVFLDHLGRNRCILIGRDFGGSL 161
T A F + + L G + +IG G ++
Sbjct: 67 FTRAPFRFRFTLPSMAEDLSALCAAEGLSPDGVIGHSAGAAI 108
>gnl|CDD|179554 PRK03204, PRK03204, haloalkane dehalogenase; Provisional.
Length = 286
Score = 34.1 bits (78), Expect = 0.045
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
Query: 88 PLMLFLHGFPESWYIWKHQMTEFSHEYWTVAVDI--------KTNF-RTIADRYFLVDSL 138
P +L HG P ++++ + + VA D + F I + +
Sbjct: 35 PPILLCHGNPTWSFLYRDIIVALRDRFRCVAPDYLGFGLSERPSGFGYQIDE---HARVI 91
Query: 139 KVFLDHLGRNRCILIGRDFGG 159
F+DHLG +R + +G+D+GG
Sbjct: 92 GEFVDHLGLDRYLSMGQDWGG 112
>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit
dihydrolipoyllysine-residue acetyltransferase;
Provisional.
Length = 371
Score = 33.0 bits (76), Expect = 0.097
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 133 FLVDSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELV 173
L ++ FLD LG R L+G GG++ + P+ V
Sbjct: 182 ELAAAVLAFLDALGIERAHLVGHSMGGAVALRLAARAPQRV 222
>gnl|CDD|150830 pfam10216, ChpXY, CO2 hydration protein (ChpXY). This small family
of proteins includes paralogues ChpX and ChpY in
Synechococcus sp. PCC7942 and other cyanobacteria,
associated with distinct NAD(P)H dehydrogenase
complexes. These proteins collectively enable
light-dependent CO2 hydration and CO2 uptake; loss of
both blocks growth at low CO2 concentrations.
Length = 353
Score = 33.1 bits (76), Expect = 0.10
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 80 VSAGSPKNPLMLFLHG-FPESWYIWKHQMTEFSH--EYWTVAVDIKTNFRTIADRY 132
+ A NPL+L LH FP+ Q+ +S ++W V DI F ++DRY
Sbjct: 113 IRAKFKGNPLLLGLHKLFPDFLPEQVRQLAYYSALGQFWRVMSDI---FLDLSDRY 165
>gnl|CDD|235628 PRK05855, PRK05855, short chain dehydrogenase; Validated.
Length = 582
Score = 33.0 bits (76), Expect = 0.13
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 83 GSPKNPLMLFLHGFPESWYIWKHQMTEFSHEYWTVAVDIK-----TNFRTIADRYF--LV 135
G P P ++ +HG+P++ +W + + VA D++ + + A L
Sbjct: 21 GDPDRPTVVLVHGYPDNHEVWDGVAPLLADRFRVVAYDVRGAGRSSAPKRTAAYTLARLA 80
Query: 136 DSLKVFLDHLGRNRCI-LIGRDFGGSLVWSFL 166
D +D + +R + L+ D+G W +
Sbjct: 81 DDFAAVIDAVSPDRPVHLLAHDWGSIQGWEAV 112
>gnl|CDD|218645 pfam05577, Peptidase_S28, Serine carboxypeptidase S28. These
serine proteases include several eukaryotic enzymes such
as lysosomal Pro-X carboxypeptidase,
dipeptidyl-peptidase II, and thymus-specific serine
peptidase.
Length = 433
Score = 32.3 bits (74), Expect = 0.19
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 128 IADRYFLVDSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINAP 182
+AD + ++ + L ++ I G + GSL KYP LVV ++ +AP
Sbjct: 93 LADVASFIKAMNQKFNGLSSSKWITFGGSYSGSLAAWARKKYPHLVVGAVASSAP 147
Score = 29.6 bits (67), Expect = 1.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 8 NRCILIGRDFGGSLVWSFLDKYPELVVKSIIINAP 42
++ I G + GSL KYP LVV ++ +AP
Sbjct: 113 SKWITFGGSYSGSLAAWARKKYPHLVVGAVASSAP 147
>gnl|CDD|131480 TIGR02427, protocat_pcaD, 3-oxoadipate enol-lactonase. Members of
this family are 3-oxoadipate enol-lactonase. Note that
the substrate is known as 3-oxoadipate enol-lactone,
2-oxo-2,3-dihydrofuran-5-acetate,
4,5-Dihydro-5-oxofuran-2-acetate, and
5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the
catalyzes the fourth step in the protocatechuate
degradation to beta-ketoadipate and then to succinyl-CoA
and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate,
and vanillate all can be converted in one step to
protocatechuate. This enzyme also acts in catechol
degradation. In genomes that catabolize both catechol
and protocatechuate, two forms of this enzyme may be
found. All members of the seed alignment for this model
were chosen from within protocatechuate degradation
operons of at least three genes of the pathway, from
genomes with the complete pathway through
beta-ketoadipate [Energy metabolism, Other].
Length = 251
Score = 31.2 bits (71), Expect = 0.36
Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 12/117 (10%)
Query: 75 VHFNFVSAGSPKNPLMLFLHGFPESWYIWKHQMTEFSHEYWTVAVDIKTNFR-------- 126
+H+ A P+++F++ +W + + ++ + D + +
Sbjct: 2 LHYRLDGAADGA-PVLVFINSLGTDLRMWDPVLPALTPDFRVLRYDKRGHGLSDAPEGPY 60
Query: 127 TIADRYFLVDSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINAPH 183
+I D L D + LDHLG R + G GG + + P+ V ++ N
Sbjct: 61 SIED---LADDVLALLDHLGIERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAA 114
>gnl|CDD|215315 PLN02578, PLN02578, hydrolase.
Length = 354
Score = 31.3 bits (71), Expect = 0.38
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 9/112 (8%)
Query: 75 VHFNFVSAGSPKNPLMLFLHGFPESWYIWKHQMTEFSHEYWTVAVD-IKTNFRTIA---- 129
+H+ G P ++ +HGF S + W++ + E + +Y A+D + + A
Sbjct: 78 IHYVVQGEGLP----IVLIHGFGASAFHWRYNIPELAKKYKVYALDLLGFGWSDKALIEY 133
Query: 130 DRYFLVDSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINA 181
D D + F+ + + +L+G GG S YPELV ++N+
Sbjct: 134 DAMVWRDQVADFVKEVVKEPAVLVGNSLGGFTALSTAVGYPELVAGVALLNS 185
>gnl|CDD|188121 TIGR01250, pro_imino_pep_2, proline-specific peptidase, Bacillus
coagulans-type subfamily. This model describes a
subfamily of the alpha/beta fold family of hydrolases.
Characterized members include prolinases (Pro-Xaa
dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC
3.4.11.5), and a leucyl aminopeptidase.
Length = 289
Score = 31.2 bits (71), Expect = 0.43
Identities = 32/142 (22%), Positives = 47/142 (33%), Gaps = 54/142 (38%)
Query: 75 VHFNFVSAGSPKNPLMLFLHGFPESWYIWKHQMTEFSHEYWTVAVDIKTNFRTIADR--- 131
F K L+L LHG P SHEY N R +
Sbjct: 14 HLFTKTGGEGEKIKLLL-LHGGPGM-----------SHEYLE-------NLRELLKEEGR 54
Query: 132 ---------------------------YFLVDSLKVFLDHLGRNRCILIGRDFGGSLVWS 164
YF VD L+ + LG ++ L+G +GG L
Sbjct: 55 EVIMYDQLGCGYSDQPDDSDEELWTIDYF-VDELEEVREKLGLDKFYLLGHSWGGMLAQE 113
Query: 165 FLDKYPE----LVVKSIIINAP 182
+ KY + L++ S++ +AP
Sbjct: 114 YALKYGQHLKGLIISSMLDSAP 135
>gnl|CDD|226584 COG4099, COG4099, Predicted peptidase [General function prediction
only].
Length = 387
Score = 29.9 bits (67), Expect = 1.1
Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 25/121 (20%)
Query: 80 VSAGSPKNPLMLFLHGFPE----------------SWYIWKHQMTEFSHEYWTV--AVDI 121
+ PL+LFLHG + +W + Q + +Y + +
Sbjct: 184 YAPDKKYYPLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQCFVLAPQYNPIFADSEE 243
Query: 122 KTNFRTIADRYFLVDSL-KVFLDH--LGRNRCILIGRDFGGSLVWSFLDKYPELVVKSII 178
KT I +D + +V + R+R +IG GG W+ +K+P+ ++
Sbjct: 244 KTLLYLIE----KIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVP 299
Query: 179 I 179
I
Sbjct: 300 I 300
>gnl|CDD|239735 cd03766, Gn_AT_II_novel, Gn_AT_II_novel. This asparagine
synthase-related domain is present in eukaryotes but its
function has not yet been determined. The glutaminase
domain catalyzes an amide nitrogen transfer from
glutamine to the appropriate substrate. In this process,
glutamine is hydrolyzed to glutamic acid and ammonia.
This domain is related to members of the Ntn (N-terminal
nucleophile) hydrolase superfamily and is found at the
N-terminus of enzymes such as glucosamine-fructose
6-phosphate synthase (GLMS or GFAT), glutamine
phosphoribosylpyrophosphate (Prpp) amidotransferase
(GPATase), asparagine synthetase B (AsnB), beta lactam
synthetase (beta-LS) and glutamate synthase (GltS). GLMS
catalyzes the formation of glucosamine 6-phosphate from
fructose 6-phosphate and glutamine in amino sugar
synthesis. GPATase catalyzes the first step in purine
biosynthesis, an amide transfer from glutamine to PRPP,
resulting in phosphoribosylamine, pyrophosphate and
glutamate. Asparagine synthetase B synthesizes
asparagine from aspartate and glutamine. Beta-LS
catalyzes the formation of the beta-lactam ring in the
beta-lactamase inhibitor clavulanic acid. GltS
synthesizes L-glutamate from 2-oxoglutarate and
L-glutamine. These enzymes are generally dimers, but
GPATase also exists as a homotetramer.
Length = 181
Score = 29.2 bits (66), Expect = 1.2
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 140 VFLDHLGRNRCILIGRDFGG--SLVWSFLDKYPELVVKSIIINAPHPAVFKQELRGLI 195
++ D + GRD G SL++ EL + S + + + F++ L G I
Sbjct: 126 IYYD--ASENKLYFGRDCLGRRSLLYKLDPNGFELSISS-VSGSSSGSGFQEVLAGGI 180
Score = 29.2 bits (66), Expect = 1.4
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 6 CRNRCILIGRDFGG--SLVWSFLDKYPELVVKSI 37
+ GRD G SL++ EL + S+
Sbjct: 130 ASENKLYFGRDCLGRRSLLYKLDPNGFELSISSV 163
>gnl|CDD|188696 cd08742, RGS_RGS12, Regulator of G protein signaling (RGS) domain
found in the RGS12 protein. RGS (Regulator of G-protein
Signaling) domain is an essential part of the RGS12
protein. RGS12 is a member of the RA/RGS subfamily of
RGS proteins family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). As a
major G-protein regulator, RGS domain containing
proteins are involved in many crucial cellular processes
such as regulation of intracellular trafficking, glial
differentiation, embryonic axis formation, skeletal and
muscle development, and cell migration during early
embryogenesis. RGS12 belong to the R12 RGS subfamily,
which includes RGS10 and RGS14, all of which are highly
selective for G-alpha-i1 over G-alpha-q. RGS12 exist in
multiple splice variants: RGS12s (short) contains the
core RGS/RBD/GoLoco domains, while RGS12L (long) has
additional N-terminal PDZ and PTB domains. RGS12 splice
variants show distinct expression patterns, suggesting
that they have discrete functions during mouse
embryogenesis. RGS12 also may play a critical role in
coordinating Ras-dependent signals that are required for
promoting and maintaining neuronal differentiation.
Length = 115
Score = 28.1 bits (62), Expect = 2.1
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 4/32 (12%)
Query: 38 IINAPHPAVFKQELKKMSQLIK----TRFLLS 65
I+NAPHP +FK++ ++ L+K TRFL S
Sbjct: 79 ILNAPHPDMFKEQQLQIFNLMKFDSYTRFLKS 110
>gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction
endonuclease-like fold, RmuC family [General function
prediction only].
Length = 448
Score = 28.9 bits (65), Expect = 2.6
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 101 YIWK-HQMTEFSHEYWTVAVDIKTNFRTIADRY 132
WK + + + E + F ADR
Sbjct: 343 NGWKTERQEKNAKEIAEEVGKLYDEFGKFADRL 375
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S. cerevisiae
phosphatidylinositol transfer protein (Sec14p). Domain
in homologues of a S. cerevisiae phosphatidylinositol
transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and
the RasGAP, neurofibromin (NF1). Lipid-binding domain.
The SEC14 domain of Dbl is known to associate with G
protein beta/gamma subunits.
Length = 158
Score = 28.0 bits (63), Expect = 3.1
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Query: 22 VWSFL-DKYPELVVKSIIINAPHPAVFKQELKKMSQLI------KTRFLLSRTIGAFHEN 74
+ L D YPE + K IIN P F+ K + + K RF+ + + E
Sbjct: 86 ILKILQDHYPERLGKVYIINP--PWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEY 143
Query: 75 V 75
+
Sbjct: 144 I 144
>gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha; Provisional.
Length = 762
Score = 28.7 bits (64), Expect = 3.2
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 50 ELKKMS--QLIKTRFLLSRTIGAFHENV 75
EL KM +L+K R L R IG F E V
Sbjct: 384 ELGKMDTEELLKHRMLKFRKIGGFQEGV 411
>gnl|CDD|219138 pfam06690, DUF1188, Protein of unknown function (DUF1188). This
family consists of several hypothetical archaeal
proteins of around 260 residues in length which seem to
be specific to Methanobacterium, Methanococcus and
Methanopyrus species. The function of this family is
unknown.
Length = 252
Score = 28.1 bits (63), Expect = 4.0
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 136 DSLKVFLDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIINAPHPAVFKQELRGLI 195
+++K FL+ + ++ G G+ + LDK E + + HP L+ ++
Sbjct: 31 NAIKYFLEGEEFKQALIFGAYLTGAFIAEALDKDCE-----VTVVDIHPH-----LKEIL 80
Query: 196 VPKSK-KEGRHD 206
K E +
Sbjct: 81 NEGIKFMESING 92
>gnl|CDD|182637 PRK10673, PRK10673, acyl-CoA esterase; Provisional.
Length = 255
Score = 27.8 bits (62), Expect = 5.1
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 142 LDHLGRNRCILIGRDFGGSLVWSFLDKYPELVVKSIIIN-AP 182
LD L + IG GG V + P+ + K + I+ AP
Sbjct: 75 LDALQIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAP 116
>gnl|CDD|220366 pfam09728, Taxilin, Myosin-like coiled-coil protein. Taxilin
contains an extraordinarily long coiled-coil domain in
its C-terminal half and is ubiquitously expressed. It is
a novel binding partner of several syntaxin family
members and is possibly involved in Ca2+-dependent
exocytosis in neuroendocrine cells. Gamma-taxilin,
described as leucine zipper protein Factor Inhibiting
ATF4-mediated Transcription (FIAT), localises to the
nucleus in osteoblasts and dimerises with ATF4 to form
inactive dimers, thus inhibiting ATF4-mediated
transcription.
Length = 309
Score = 27.3 bits (61), Expect = 6.5
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 47 FKQELKKMSQLIKT 60
FKQE++KMS+ IK
Sbjct: 242 FKQEMEKMSKKIKK 255
>gnl|CDD|225428 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid
transport and metabolism].
Length = 426
Score = 27.6 bits (62), Expect = 6.7
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 11/57 (19%)
Query: 18 GGSLVWSFLDKYPELVVKSIIINAPHPA----VFKQELKKMSQLIKTRFLLSRTIGA 70
GG W+ ++PE P P+ V+ + + +IK R L R +GA
Sbjct: 224 GGKFDWTANGRFPEF-------TTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGA 273
>gnl|CDD|224932 COG2021, MET2, Homoserine acetyltransferase [Amino acid transport
and metabolism].
Length = 368
Score = 27.3 bits (61), Expect = 6.9
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 127 TIADRYFLVDSLKVFLDHLGRNRC-ILIGRDFGGSLVWSFLDKYPELVVKSIIINAPHPA 185
TI D +V + ++ LD LG + ++G GG + +YP+ V ++I I
Sbjct: 128 TIRD---MVRAQRLLLDALGIKKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARL 184
>gnl|CDD|217163 pfam02646, RmuC, RmuC family. This family contains several
bacterial RmuC DNA recombination proteins. The function
of the RMUC protein is unknown but it is suspected that
it is either a structural protein that protects DNA
against nuclease action, or is itself involved in DNA
cleavage at the regions of DNA secondary structures.
Length = 301
Score = 27.2 bits (61), Expect = 7.8
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 101 YIWK-HQMTEFSHEYWTVAVDIKTNFRTIADRY 132
W+ ++ + + E +A ++ F ADR
Sbjct: 220 NGWRTERIEKNAKEIAELAGELYDEFGKFADRL 252
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.142 0.448
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,141,790
Number of extensions: 1165450
Number of successful extensions: 1235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1224
Number of HSP's successfully gapped: 48
Length of query: 231
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 137
Effective length of database: 6,768,326
Effective search space: 927260662
Effective search space used: 927260662
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.7 bits)