BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13224
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of
The Yeast Chd1 Chromatin Remodeler
Length = 800
Score = 139 bits (351), Expect = 6e-34, Method: Composition-based stats.
Identities = 68/124 (54%), Positives = 86/124 (69%), Gaps = 1/124 (0%)
Query: 38 GKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLM 97
GK+ LD +L +LK GHRVLIF+QM RMLD+L +L+ G + RLDGT QR++ +
Sbjct: 556 GKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISI 615
Query: 98 ERFNM-DARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 156
+ FN D+ F F+LSTR+GG+GINL ADTVV +DSDWNP D QA R HRIGQ V
Sbjct: 616 DHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHV 675
Query: 157 HIYR 160
+YR
Sbjct: 676 MVYR 679
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF
EUKARYOTIC Rad54
Length = 644
Score = 96.7 bits (239), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 38 GKLQSLDVILRKLKAG-GHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVL 96
GK+ LD IL + +V++ + T+ LD+ E ++Y+RLDGT + +R +
Sbjct: 399 GKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKI 458
Query: 97 MERFNMDARI-FCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRD 155
+ERFN + F F+LS+++GG G+NL GA+ +V +D DWNP D QA R R GQ +
Sbjct: 459 VERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKT 518
Query: 156 VHIYR 160
+IYR
Sbjct: 519 CYIYR 523
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
pdb|1Z5Z|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
Length = 271
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 71/125 (56%), Gaps = 8/125 (6%)
Query: 40 LQSLDVILRKLKAGGHRVLIFTQMTRM----LDVLEAFLNFHGHIYLRLDGTTKVDQRQV 95
++++++I L G ++ IFTQ M +++E LN L G +R
Sbjct: 99 IRTMEIIEEALDEG-DKIAIFTQFVDMGKIIRNIIEKELNTEVPF---LYGELSKKERDD 154
Query: 96 LMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRD 155
++ +F + + +LS ++GG GINLT A+ V+ +D WNP ++ QA DR +RIGQTR+
Sbjct: 155 IISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRN 214
Query: 156 VHIYR 160
V +++
Sbjct: 215 VIVHK 219
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN
Length = 500
Score = 73.9 bits (180), Expect = 3e-14, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 71/125 (56%), Gaps = 8/125 (6%)
Query: 40 LQSLDVILRKLKAGGHRVLIFTQMTRM----LDVLEAFLNFHGHIYLRLDGTTKVDQRQV 95
++++++I L G ++ IFTQ M +++E LN L G +R
Sbjct: 328 IRTMEIIEEALDEG-DKIAIFTQFVDMGKIIRNIIEKELNTEVPF---LYGELSKKERDD 383
Query: 96 LMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRD 155
++ +F + + +LS ++GG GINLT A+ V+ +D WNP ++ QA DR +RIGQTR+
Sbjct: 384 IISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRN 443
Query: 156 VHIYR 160
V +++
Sbjct: 444 VIVHK 448
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
With Dsdna
pdb|1Z63|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
With Dsdna
Length = 500
Score = 71.6 bits (174), Expect = 2e-13, Method: Composition-based stats.
Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 7/111 (6%)
Query: 54 GHRVLIFTQMTR----MLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCF 109
G ++ IFTQ + +++E LN L G +R ++ +F + +
Sbjct: 341 GDKIAIFTQFVDXGKIIRNIIEKELNTEVPF---LYGELSKKERDDIISKFQNNPSVKFI 397
Query: 110 ILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 160
+LS ++GG GINLT A+ V+ +D WNP ++ QA DR +RIGQTR+V +++
Sbjct: 398 VLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHK 448
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 56 RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115
+ +IF + L A L+ GH L G V+QR ++ERF +++T
Sbjct: 268 QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK--VLVTTNV 325
Query: 116 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT 153
GI++ V+ +D + + + HRIG+T
Sbjct: 326 CARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRT 363
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 56 RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115
+ +IF + L A L+ GH L G V+QR ++ERF +++T
Sbjct: 284 QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK--VLVTTNV 341
Query: 116 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT 153
GI++ V+ +D + + + HRIG+T
Sbjct: 342 CARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRT 379
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 56 RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115
+ +IF + L A L+ GH L G V+QR ++ERF +++T
Sbjct: 305 QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK--VLVTTNV 362
Query: 116 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT 153
GI++ V+ +D + + + HRIG+T
Sbjct: 363 CARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRT 400
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 56 RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115
+ +IF + L A L+ GH L G V+QR ++ERF +++T
Sbjct: 335 QAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKE--KVLVTTNV 392
Query: 116 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT 153
GI++ V+ +D + + + HRIG+T
Sbjct: 393 CARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRT 430
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
pdb|3DMQ|B Chain B, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
Length = 968
Score = 32.0 bits (71), Expect = 0.14, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 110 ILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159
+L + G G N A V +D +NP + Q R RIGQ D+ I+
Sbjct: 560 LLCSEIGSEGRNFQFASHXVXFDLPFNPDLLEQRIGRLDRIGQAHDIQIH 609
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 8/119 (6%)
Query: 35 YDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQ 94
Y+ K ++ L ++F + R D L +FL+ + G QR+
Sbjct: 281 YEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQRE 340
Query: 95 VLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT 153
+ F + +++T G+++ V+ YD M ++ D HRIG+T
Sbjct: 341 QALRDFKNGS--MKVLIATSVASRGLDIKNIKHVINYD------MPSKIDDYVHRIGRT 391
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 39 KLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLME 98
K Q+L I + G + +IF Q R L + GH L G V+QR +++
Sbjct: 21 KYQALCNIYGSITIG--QAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQ 78
Query: 99 RFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT 153
RF D + I +T GI++ VV +D + + HRIG+T
Sbjct: 79 RFR-DGKEKVLI-TTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRT 131
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 58 LIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGG 117
+IF + + + + GH L G + QR +M+ F + +++T
Sbjct: 361 IIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTS--KVLVTTNVIA 418
Query: 118 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT 153
GI+++ + VV YD + Q HRIG+T
Sbjct: 419 RGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRT 454
>pdb|1YA0|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Smg7
pdb|1YA0|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Smg7
Length = 497
Score = 30.0 bits (66), Expect = 0.56, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 68 DVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100
D ++AF+ FHGH+YL R+ L E+F
Sbjct: 248 DFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQF 280
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 58 LIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGG 117
+IF + +VL L GH L G + +R L++ F + R I +T
Sbjct: 247 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFR-EGRSKVLI-TTNVLA 304
Query: 118 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT 153
GI++ VV YD A HRIG+T
Sbjct: 305 RGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRT 340
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 58 LIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGG 117
+IF + +VL L GH L G + +R L++ F + R I +T
Sbjct: 247 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFR-EGRSKVLI-TTNVLA 304
Query: 118 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT 153
GI++ VV YD A HRIG+T
Sbjct: 305 RGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRT 340
>pdb|1M2D|A Chain A, Crystal Structure At 1.05 Angstroms Resolution Of The
Cys59ser Variant Of The Thioredoxin-Like [2fe-2s]
Ferredoxin From Aquifex Aeolicus
pdb|1M2D|B Chain B, Crystal Structure At 1.05 Angstroms Resolution Of The
Cys59ser Variant Of The Thioredoxin-Like [2fe-2s]
Ferredoxin From Aquifex Aeolicus
Length = 110
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 94 QVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDW 135
Q ME+ D ++F + T +G + ++ G VV+ D W
Sbjct: 32 QAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVVVVYPDGVW 73
>pdb|1M2B|A Chain A, Crystal Structure At 1.25 Angstroms Resolution Of The
Cys55ser Variant Of The Thioredoxin-Like [2fe-2s]
Ferredoxin From Aquifex Aeolicus
pdb|1M2B|B Chain B, Crystal Structure At 1.25 Angstroms Resolution Of The
Cys55ser Variant Of The Thioredoxin-Like [2fe-2s]
Ferredoxin From Aquifex Aeolicus
Length = 110
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 94 QVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDW 135
Q ME+ D ++F + T +G + + G VV+ D W
Sbjct: 32 QAFMEKIQTDPQLFMTTVITPTGSMNACMMGPVVVVYPDGVW 73
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 58 LIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGG 117
+IF + +VL L GH L G + +R L++ F + R I +T
Sbjct: 41 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFR-EGRSKVLI-TTNVLA 98
Query: 118 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT 153
GI++ VV YD A HRIG+T
Sbjct: 99 RGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRT 134
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 58 LIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGG 117
+IF + +VL L GH L G + +R L++ F + R I +T
Sbjct: 40 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFR-EGRSKVLI-TTNVLA 97
Query: 118 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT 153
GI++ VV YD A HRIG+T
Sbjct: 98 RGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRT 133
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 58 LIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGG 117
+IF + +VL L GH L G + +R L++ F + R I +T
Sbjct: 39 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFR-EGRSKVLI-TTNVLA 96
Query: 118 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT 153
GI++ VV YD A HRIG+T
Sbjct: 97 RGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRT 132
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 44 DVILRKLKAGGHRVLIFTQ-MTRMLDVLEAFL 74
DVI+R+ ++G RVLI T + R +DV + L
Sbjct: 320 DVIMREFRSGSSRVLITTDLLARGIDVQQVSL 351
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 44 DVILRKLKAGGHRVLIFTQ-MTRMLDVLEAFL 74
DVI+R+ ++G RVLI T + R +DV + L
Sbjct: 294 DVIMREFRSGSSRVLITTDLLARGIDVQQVSL 325
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.141 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,450,637
Number of Sequences: 62578
Number of extensions: 159188
Number of successful extensions: 430
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 24
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.7 bits)