Query psy13224
Match_columns 160
No_of_seqs 109 out of 1353
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 23:19:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13224.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13224hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0385|consensus 100.0 1.7E-30 3.7E-35 210.9 13.2 149 12-160 442-594 (971)
2 KOG0387|consensus 100.0 8.6E-30 1.9E-34 207.3 13.9 148 13-160 501-653 (923)
3 PLN03142 Probable chromatin-re 100.0 1.1E-29 2.4E-34 216.5 14.2 150 11-160 441-594 (1033)
4 KOG0391|consensus 100.0 1.3E-28 2.8E-33 206.3 14.2 143 18-160 1240-1382(1958)
5 KOG0389|consensus 99.9 2.4E-27 5.2E-32 193.0 13.4 128 33-160 756-883 (941)
6 KOG0384|consensus 99.9 3.8E-27 8.2E-32 198.5 10.7 151 10-160 644-806 (1373)
7 KOG0390|consensus 99.9 3.3E-26 7E-31 188.9 13.3 124 37-160 577-702 (776)
8 PRK04914 ATP-dependent helicas 99.9 8.4E-26 1.8E-30 192.2 12.5 123 36-160 477-600 (956)
9 KOG0392|consensus 99.9 7.1E-25 1.5E-29 184.8 13.2 144 17-160 1286-1449(1549)
10 KOG0388|consensus 99.9 6.7E-25 1.5E-29 177.7 11.1 126 34-160 1024-1149(1185)
11 KOG0386|consensus 99.9 1.1E-23 2.4E-28 175.2 10.1 150 11-160 679-833 (1157)
12 KOG0331|consensus 99.9 5E-23 1.1E-27 164.1 11.5 133 25-159 311-444 (519)
13 KOG1002|consensus 99.9 1.4E-22 3.1E-27 159.1 10.2 125 36-160 618-744 (791)
14 cd00079 HELICc Helicase superf 99.9 4.6E-22 1E-26 133.8 11.4 120 38-159 12-131 (131)
15 COG0553 HepA Superfamily II DN 99.9 1.2E-21 2.7E-26 167.2 14.2 126 35-160 688-817 (866)
16 KOG1015|consensus 99.9 6.7E-22 1.5E-26 164.1 11.7 125 36-160 1124-1272(1567)
17 KOG0333|consensus 99.9 1.1E-21 2.3E-26 154.7 10.4 128 27-158 492-619 (673)
18 PTZ00110 helicase; Provisional 99.9 8.5E-21 1.8E-25 155.4 12.2 122 36-159 359-480 (545)
19 KOG4439|consensus 99.8 9.9E-21 2.1E-25 153.3 11.6 125 36-160 727-853 (901)
20 KOG0330|consensus 99.8 8.1E-21 1.7E-25 145.2 8.9 139 14-156 262-400 (476)
21 KOG0345|consensus 99.8 2.4E-20 5.1E-25 145.5 10.5 152 2-159 207-360 (567)
22 KOG0328|consensus 99.8 2.7E-20 5.9E-25 137.6 10.0 114 39-156 253-366 (400)
23 PRK04837 ATP-dependent RNA hel 99.8 4.8E-20 1E-24 147.0 11.4 119 37-159 240-358 (423)
24 COG0513 SrmB Superfamily II DN 99.8 3.6E-20 7.9E-25 150.6 10.6 116 38-157 259-374 (513)
25 KOG0342|consensus 99.8 4.8E-20 1E-24 144.3 9.8 135 20-157 297-431 (543)
26 KOG1000|consensus 99.8 2.4E-19 5.1E-24 140.9 11.1 123 37-159 471-597 (689)
27 PRK11192 ATP-dependent RNA hel 99.8 5.2E-19 1.1E-23 141.4 12.4 117 38-158 231-347 (434)
28 PRK04537 ATP-dependent RNA hel 99.8 5.8E-19 1.3E-23 145.2 12.6 118 37-158 242-359 (572)
29 PLN00206 DEAD-box ATP-dependen 99.8 5.5E-19 1.2E-23 144.1 11.6 121 37-159 350-471 (518)
30 PRK11776 ATP-dependent RNA hel 99.8 8.7E-19 1.9E-23 141.1 12.5 118 37-158 227-344 (460)
31 PRK01297 ATP-dependent RNA hel 99.8 1.2E-18 2.5E-23 140.9 12.8 120 36-159 319-438 (475)
32 PRK10590 ATP-dependent RNA hel 99.8 1.4E-18 3.1E-23 139.8 12.2 117 38-158 231-347 (456)
33 TIGR00614 recQ_fam ATP-depende 99.8 1.4E-18 2.9E-23 140.4 12.0 117 40-159 213-329 (470)
34 PF00271 Helicase_C: Helicase 99.8 3.1E-19 6.8E-24 110.3 5.7 78 72-151 1-78 (78)
35 PRK13766 Hef nuclease; Provisi 99.8 3.8E-18 8.2E-23 145.0 13.3 117 36-154 345-471 (773)
36 PRK11634 ATP-dependent RNA hel 99.8 2.7E-18 5.9E-23 142.4 11.7 119 37-159 230-348 (629)
37 PHA02558 uvsW UvsW helicase; P 99.8 7.2E-18 1.6E-22 137.0 13.6 123 36-159 326-449 (501)
38 KOG0340|consensus 99.8 3.5E-18 7.5E-23 129.6 10.6 130 24-155 223-353 (442)
39 PRK11057 ATP-dependent DNA hel 99.8 6.3E-18 1.4E-22 140.1 12.9 116 39-158 223-338 (607)
40 COG1111 MPH1 ERCC4-like helica 99.8 1.3E-17 2.8E-22 131.5 12.3 121 35-158 345-476 (542)
41 KOG0341|consensus 99.7 4.2E-18 9E-23 130.9 7.9 114 42-157 409-522 (610)
42 TIGR01389 recQ ATP-dependent D 99.7 2.7E-17 5.8E-22 136.2 12.6 119 37-159 209-327 (591)
43 PTZ00424 helicase 45; Provisio 99.7 2.2E-17 4.7E-22 130.7 11.6 117 39-159 254-370 (401)
44 KOG0343|consensus 99.7 1.7E-17 3.7E-22 132.0 10.5 146 10-159 270-418 (758)
45 PLN03137 ATP-dependent DNA hel 99.7 2.6E-17 5.6E-22 141.0 11.7 104 54-159 680-783 (1195)
46 KOG0335|consensus 99.7 1.5E-17 3.3E-22 131.3 9.1 125 33-159 309-440 (482)
47 KOG0348|consensus 99.7 8.8E-17 1.9E-21 127.5 12.0 131 27-159 396-550 (708)
48 smart00490 HELICc helicase sup 99.7 3.4E-17 7.3E-22 101.3 7.4 81 69-151 2-82 (82)
49 KOG0336|consensus 99.7 2.3E-17 4.9E-22 127.5 7.8 130 24-156 436-565 (629)
50 TIGR00603 rad25 DNA repair hel 99.7 1.3E-16 2.7E-21 132.9 12.5 114 36-155 478-592 (732)
51 KOG0332|consensus 99.7 8.9E-17 1.9E-21 122.8 10.3 116 37-156 315-436 (477)
52 PRK12898 secA preprotein trans 99.7 2.8E-16 6.2E-21 129.5 11.6 121 34-158 453-581 (656)
53 PRK09200 preprotein translocas 99.7 4.9E-16 1.1E-20 130.5 12.7 120 35-158 409-536 (790)
54 KOG1001|consensus 99.7 5E-18 1.1E-22 140.6 0.7 125 36-160 520-645 (674)
55 KOG0326|consensus 99.7 3.6E-17 7.8E-22 123.0 5.2 122 28-153 298-419 (459)
56 KOG1016|consensus 99.7 3.5E-17 7.6E-22 134.4 5.3 125 36-160 701-844 (1387)
57 TIGR03817 DECH_helic helicase/ 99.7 2.8E-16 6E-21 132.7 10.3 111 46-158 263-381 (742)
58 KOG0344|consensus 99.6 2.6E-15 5.7E-20 120.0 11.2 118 36-157 371-489 (593)
59 TIGR00963 secA preprotein tran 99.6 6E-15 1.3E-19 122.7 13.0 119 37-159 388-513 (745)
60 COG0514 RecQ Superfamily II DN 99.6 4E-15 8.7E-20 121.0 11.6 104 53-158 229-332 (590)
61 TIGR03714 secA2 accessory Sec 99.6 4.1E-15 8.8E-20 124.2 11.8 119 36-159 406-533 (762)
62 KOG0338|consensus 99.6 2.1E-15 4.6E-20 119.3 8.7 114 37-154 411-524 (691)
63 TIGR01587 cas3_core CRISPR-ass 99.6 1.3E-14 2.9E-19 113.3 12.8 116 38-159 207-332 (358)
64 KOG0327|consensus 99.6 3.2E-15 6.9E-20 114.4 8.8 113 37-155 250-362 (397)
65 KOG0347|consensus 99.6 1.2E-15 2.7E-20 121.4 6.7 99 54-154 463-561 (731)
66 PRK13767 ATP-dependent helicas 99.6 8.4E-15 1.8E-19 125.8 12.3 109 41-151 271-385 (876)
67 TIGR00631 uvrb excinuclease AB 99.6 1.3E-14 2.9E-19 120.7 12.9 120 37-159 425-549 (655)
68 PRK05298 excinuclease ABC subu 99.6 1.9E-14 4.2E-19 120.1 13.3 119 37-158 429-552 (652)
69 KOG0350|consensus 99.6 4.4E-15 9.6E-20 117.1 8.1 129 24-156 401-533 (620)
70 KOG0334|consensus 99.6 6E-15 1.3E-19 124.3 8.9 133 24-159 583-716 (997)
71 KOG0339|consensus 99.6 8.6E-15 1.9E-19 115.9 8.8 119 37-158 452-570 (731)
72 PRK12906 secA preprotein trans 99.6 3.1E-14 6.8E-19 119.3 12.0 120 36-159 422-549 (796)
73 KOG4284|consensus 99.6 9.4E-15 2E-19 118.4 8.1 114 38-155 258-371 (980)
74 TIGR00580 mfd transcription-re 99.6 3.6E-14 7.9E-19 121.8 12.0 107 51-159 657-766 (926)
75 KOG0346|consensus 99.5 1.9E-14 4.2E-19 112.1 8.4 129 26-157 241-404 (569)
76 PRK10917 ATP-dependent DNA hel 99.5 1.1E-13 2.4E-18 116.3 12.9 120 38-159 455-585 (681)
77 KOG0354|consensus 99.5 1.1E-13 2.5E-18 114.3 12.2 122 35-159 392-526 (746)
78 TIGR02621 cas3_GSU0051 CRISPR- 99.5 7.9E-14 1.7E-18 117.7 11.5 100 51-155 269-382 (844)
79 PRK10689 transcription-repair 99.5 1E-13 2.2E-18 121.3 12.0 113 44-159 800-915 (1147)
80 TIGR00643 recG ATP-dependent D 99.5 2.7E-13 5.9E-18 113.1 13.1 117 41-159 435-562 (630)
81 PRK12900 secA preprotein trans 99.5 1.6E-13 3.4E-18 116.5 11.2 120 36-159 580-707 (1025)
82 COG1061 SSL2 DNA or RNA helica 99.5 3.7E-13 8E-18 108.0 12.7 118 36-157 266-384 (442)
83 PRK09751 putative ATP-dependen 99.4 1.4E-12 3.1E-17 115.6 11.4 103 45-150 236-371 (1490)
84 PHA02653 RNA helicase NPH-II; 99.4 2.6E-12 5.6E-17 107.3 11.5 96 53-151 394-503 (675)
85 KOG0298|consensus 99.4 5.4E-13 1.2E-17 114.4 6.7 119 36-160 1201-1321(1394)
86 TIGR01970 DEAH_box_HrpB ATP-de 99.4 5.7E-12 1.2E-16 107.3 12.3 97 53-151 208-325 (819)
87 PRK02362 ski2-like helicase; P 99.4 3.7E-12 8.1E-17 108.1 10.6 102 50-153 239-385 (737)
88 KOG0337|consensus 99.4 1.1E-12 2.4E-17 101.9 5.6 121 33-156 241-361 (529)
89 KOG0351|consensus 99.4 2.3E-12 4.9E-17 110.3 8.0 145 13-159 442-588 (941)
90 PRK12904 preprotein translocas 99.4 1.5E-11 3.3E-16 103.8 12.7 120 36-159 412-569 (830)
91 KOG0349|consensus 99.3 4.2E-12 9E-17 99.4 8.5 95 54-150 505-602 (725)
92 PRK11664 ATP-dependent RNA hel 99.3 1E-11 2.2E-16 105.9 11.0 97 53-151 211-328 (812)
93 PRK01172 ski2-like helicase; P 99.3 1.8E-11 3.9E-16 103.0 11.6 110 43-155 225-368 (674)
94 PRK13104 secA preprotein trans 99.3 3.4E-11 7.3E-16 102.1 12.5 120 36-159 426-583 (896)
95 TIGR03158 cas3_cyano CRISPR-as 99.3 3.7E-11 8E-16 94.1 9.7 100 38-148 251-357 (357)
96 PRK13107 preprotein translocas 99.3 6.4E-11 1.4E-15 100.3 11.6 121 35-159 430-587 (908)
97 PRK11448 hsdR type I restricti 99.2 1.2E-10 2.7E-15 102.0 13.0 103 54-159 698-812 (1123)
98 COG1201 Lhr Lhr-like helicases 99.2 9.8E-11 2.1E-15 98.8 11.2 110 43-154 242-353 (814)
99 KOG0352|consensus 99.2 1.7E-11 3.8E-16 95.8 6.1 102 56-159 257-358 (641)
100 PRK00254 ski2-like helicase; P 99.2 1.1E-10 2.5E-15 98.9 9.9 107 44-152 228-375 (720)
101 PRK09401 reverse gyrase; Revie 99.2 2.2E-10 4.8E-15 100.9 11.1 104 38-150 315-431 (1176)
102 PRK09694 helicase Cas3; Provis 99.2 3.9E-10 8.5E-15 96.6 12.1 109 41-153 548-665 (878)
103 PRK11131 ATP-dependent RNA hel 99.2 2.1E-10 4.4E-15 100.8 10.3 96 53-152 285-401 (1294)
104 TIGR01967 DEAH_box_HrpA ATP-de 99.1 7.4E-10 1.6E-14 97.6 11.3 109 39-151 263-393 (1283)
105 TIGR01054 rgy reverse gyrase. 99.0 3.4E-09 7.3E-14 93.6 11.4 90 40-137 315-411 (1171)
106 PRK14701 reverse gyrase; Provi 99.0 1.9E-09 4.1E-14 97.3 9.9 103 41-153 320-446 (1638)
107 COG1202 Superfamily II helicas 99.0 7.7E-10 1.7E-14 89.5 4.9 114 36-152 416-540 (830)
108 TIGR00595 priA primosomal prot 99.0 5.5E-09 1.2E-13 85.3 9.8 90 67-158 271-376 (505)
109 PRK12903 secA preprotein trans 98.9 3.3E-08 7.1E-13 83.8 11.7 122 34-159 406-535 (925)
110 COG1200 RecG RecG-like helicas 98.8 7.8E-08 1.7E-12 79.4 11.6 119 37-157 456-585 (677)
111 PRK12326 preprotein translocas 98.8 1.1E-07 2.3E-12 79.6 12.3 120 36-159 409-543 (764)
112 KOG0953|consensus 98.8 3.6E-08 7.8E-13 79.5 8.7 99 52-153 356-464 (700)
113 KOG0353|consensus 98.8 1.9E-08 4.1E-13 78.2 6.8 104 39-144 300-405 (695)
114 COG0556 UvrB Helicase subunit 98.8 1.8E-07 3.9E-12 75.4 12.3 112 40-153 429-548 (663)
115 PRK05580 primosome assembly pr 98.8 9.8E-08 2.1E-12 80.6 11.4 90 67-158 439-544 (679)
116 KOG1123|consensus 98.8 1.6E-07 3.6E-12 75.2 11.7 112 34-151 523-635 (776)
117 COG1203 CRISPR-associated heli 98.8 9.5E-08 2.1E-12 81.3 11.1 111 46-159 432-546 (733)
118 KOG0383|consensus 98.7 7.4E-09 1.6E-13 86.1 2.5 107 12-119 584-696 (696)
119 PRK13103 secA preprotein trans 98.6 5.8E-07 1.3E-11 76.9 10.3 122 34-159 429-587 (913)
120 PRK12901 secA preprotein trans 98.5 6.7E-07 1.5E-11 77.2 9.7 120 36-159 610-737 (1112)
121 PRK12899 secA preprotein trans 98.5 1.3E-06 2.8E-11 75.0 11.3 120 36-159 550-677 (970)
122 COG1197 Mfd Transcription-repa 98.5 1.5E-06 3.2E-11 75.7 11.7 108 46-156 796-906 (1139)
123 COG4098 comFA Superfamily II D 98.5 3.7E-06 8.1E-11 64.7 11.9 114 42-159 293-412 (441)
124 CHL00122 secA preprotein trans 98.4 6.8E-06 1.5E-10 70.2 12.3 85 36-123 406-491 (870)
125 COG1205 Distinct helicase fami 98.4 1.9E-06 4.1E-11 74.4 8.3 116 38-155 290-414 (851)
126 KOG0329|consensus 98.3 5.9E-07 1.3E-11 66.6 3.1 81 36-155 267-347 (387)
127 TIGR00348 hsdR type I site-spe 98.2 2.6E-05 5.6E-10 66.0 12.5 100 54-155 514-640 (667)
128 KOG4150|consensus 98.2 5E-06 1.1E-10 67.9 7.0 114 37-152 508-629 (1034)
129 PF13871 Helicase_C_4: Helicas 98.2 3.8E-06 8.3E-11 63.4 5.5 59 95-155 52-118 (278)
130 COG4096 HsdR Type I site-speci 98.1 1.3E-05 2.9E-10 67.7 8.5 94 55-150 427-525 (875)
131 COG1204 Superfamily II helicas 98.1 9.1E-06 2E-10 69.4 7.4 111 39-151 238-394 (766)
132 TIGR01407 dinG_rel DnaQ family 98.0 0.00013 2.8E-09 63.5 11.6 111 42-157 661-808 (850)
133 PF13307 Helicase_C_2: Helicas 97.9 4.4E-05 9.5E-10 53.7 7.0 82 52-137 7-94 (167)
134 COG1643 HrpA HrpA-like helicas 97.9 9.5E-05 2.1E-09 63.6 9.2 117 40-158 244-383 (845)
135 PRK12902 secA preprotein trans 97.8 0.00047 1E-08 59.5 11.8 84 37-123 422-506 (939)
136 KOG0952|consensus 97.7 0.0002 4.2E-09 62.2 8.3 98 52-151 347-477 (1230)
137 PRK08074 bifunctional ATP-depe 97.7 0.00091 2E-08 58.8 11.9 115 41-157 738-887 (928)
138 COG1199 DinG Rad3-related DNA 97.6 0.00075 1.6E-08 57.1 11.1 102 52-157 477-611 (654)
139 COG4889 Predicted helicase [Ge 97.6 0.00019 4E-09 61.7 7.0 93 63-155 480-577 (1518)
140 PF02399 Herpes_ori_bp: Origin 97.5 0.0031 6.6E-08 54.0 13.0 112 38-159 267-384 (824)
141 PF11496 HDA2-3: Class II hist 97.5 0.00084 1.8E-08 51.5 9.0 130 12-141 64-222 (297)
142 KOG0950|consensus 97.4 0.00034 7.3E-09 60.2 6.1 108 42-151 448-597 (1008)
143 PRK11747 dinG ATP-dependent DN 97.4 0.003 6.5E-08 54.0 11.5 92 40-136 520-617 (697)
144 PRK07246 bifunctional ATP-depe 97.4 0.004 8.6E-08 54.2 12.1 91 41-136 634-726 (820)
145 KOG0920|consensus 97.4 0.00059 1.3E-08 59.1 7.0 112 38-151 395-533 (924)
146 TIGR00604 rad3 DNA repair heli 97.4 0.0037 8.1E-08 53.5 11.6 93 41-135 508-615 (705)
147 COG0653 SecA Preprotein transl 97.3 0.00067 1.5E-08 58.1 6.9 115 37-155 412-537 (822)
148 PF06862 DUF1253: Protein of u 97.3 0.013 2.9E-07 47.2 13.3 113 36-150 279-396 (442)
149 KOG0951|consensus 97.3 0.0021 4.5E-08 57.2 9.0 70 80-151 609-688 (1674)
150 KOG0947|consensus 97.2 0.0024 5.3E-08 55.4 9.0 109 42-153 554-711 (1248)
151 COG1110 Reverse gyrase [DNA re 97.2 0.0033 7.2E-08 54.9 9.2 89 38-135 322-417 (1187)
152 smart00492 HELICc3 helicase su 97.2 0.0043 9.2E-08 42.5 8.2 53 82-136 26-80 (141)
153 KOG0922|consensus 97.0 0.011 2.3E-07 49.6 10.5 106 53-160 257-385 (674)
154 COG1198 PriA Primosomal protei 96.9 0.0071 1.5E-07 51.7 9.1 101 54-158 482-598 (730)
155 TIGR00595 priA primosomal prot 96.9 0.022 4.7E-07 47.1 11.3 96 34-132 5-101 (505)
156 TIGR00596 rad1 DNA repair prot 96.8 0.0023 5E-08 55.3 5.4 42 35-76 267-317 (814)
157 smart00491 HELICc2 helicase su 96.8 0.0072 1.6E-07 41.4 6.8 54 82-136 23-81 (142)
158 PRK10917 ATP-dependent DNA hel 96.8 0.031 6.8E-07 47.8 11.8 98 34-132 290-391 (681)
159 PRK05580 primosome assembly pr 96.8 0.033 7.1E-07 47.7 11.8 96 34-132 170-266 (679)
160 KOG0948|consensus 96.6 0.0043 9.3E-08 52.7 5.1 107 43-152 371-526 (1041)
161 COG1198 PriA Primosomal protei 96.5 0.015 3.3E-07 49.7 7.9 96 34-132 225-321 (730)
162 KOG0923|consensus 96.4 0.013 2.7E-07 49.4 6.9 105 53-159 472-603 (902)
163 TIGR00643 recG ATP-dependent D 96.3 0.079 1.7E-06 45.0 11.1 98 34-132 264-365 (630)
164 PRK14873 primosome assembly pr 96.1 0.14 3E-06 43.8 11.5 95 36-133 170-266 (665)
165 TIGR03117 cas_csf4 CRISPR-asso 96.1 0.16 3.5E-06 43.1 11.8 87 52-141 469-567 (636)
166 KOG1513|consensus 96.0 0.014 3E-07 50.1 5.1 62 96-159 849-919 (1300)
167 TIGR00580 mfd transcription-re 95.9 0.13 2.9E-06 45.5 11.0 98 34-132 480-581 (926)
168 KOG0949|consensus 95.6 0.02 4.3E-07 50.2 4.8 67 83-151 967-1034(1330)
169 PRK10689 transcription-repair 95.1 0.35 7.6E-06 43.9 11.1 98 34-132 629-730 (1147)
170 KOG0926|consensus 94.6 0.031 6.6E-07 48.2 2.9 73 80-154 606-696 (1172)
171 COG1200 RecG RecG-like helicas 94.0 1.1 2.4E-05 38.2 10.6 105 36-149 293-401 (677)
172 COG4581 Superfamily II RNA hel 93.2 0.18 3.8E-06 44.9 5.1 70 83-155 449-527 (1041)
173 TIGR02562 cas3_yersinia CRISPR 92.7 1.1 2.4E-05 40.3 9.1 99 58-159 761-892 (1110)
174 TIGR00614 recQ_fam ATP-depende 92.2 2.6 5.7E-05 34.5 10.5 98 32-133 32-136 (470)
175 KOG0924|consensus 92.1 0.44 9.6E-06 40.8 5.8 94 37-132 541-649 (1042)
176 PF13607 Succ_CoA_lig: Succiny 90.8 1.9 4.1E-05 29.3 7.0 84 56-160 3-88 (138)
177 PRK14701 reverse gyrase; Provi 90.3 3.8 8.3E-05 38.9 10.5 83 33-116 101-189 (1638)
178 PF10593 Z1: Z1 domain; Inter 90.0 1.9 4.2E-05 32.1 7.0 94 59-159 92-189 (239)
179 TIGR01054 rgy reverse gyrase. 89.5 3.6 7.9E-05 37.7 9.5 99 33-132 100-207 (1171)
180 COG1110 Reverse gyrase [DNA re 88.9 4.8 0.0001 36.2 9.4 87 33-120 104-196 (1187)
181 PRK11776 ATP-dependent RNA hel 88.5 8.5 0.00018 31.3 10.4 96 33-133 48-156 (460)
182 cd00046 DEXDc DEAD-like helica 88.1 5.1 0.00011 25.7 9.4 83 34-121 8-95 (144)
183 COG1197 Mfd Transcription-repa 88.1 8.7 0.00019 35.0 10.6 119 18-145 605-729 (1139)
184 PRK05728 DNA polymerase III su 87.9 1.8 3.9E-05 29.6 5.2 40 36-75 11-50 (142)
185 PRK06646 DNA polymerase III su 86.7 2.5 5.4E-05 29.4 5.4 40 36-75 11-50 (154)
186 TIGR00365 monothiol glutaredox 86.1 6.5 0.00014 24.8 8.7 58 54-112 11-74 (97)
187 PTZ00062 glutaredoxin; Provisi 85.9 11 0.00024 27.4 9.1 72 43-116 102-179 (204)
188 PRK09751 putative ATP-dependen 85.9 9.1 0.0002 36.1 9.9 95 33-132 3-132 (1490)
189 COG1205 Distinct helicase fami 85.7 5.6 0.00012 35.3 8.2 81 33-118 92-180 (851)
190 cd00268 DEADc DEAD-box helicas 85.7 10 0.00022 26.8 10.5 94 34-132 44-151 (203)
191 KOG2340|consensus 85.3 4.3 9.3E-05 34.0 6.8 93 55-149 553-647 (698)
192 PRK13766 Hef nuclease; Provisi 85.3 12 0.00026 32.6 10.1 95 33-133 36-140 (773)
193 PF13245 AAA_19: Part of AAA d 85.2 3.8 8.3E-05 24.7 5.1 41 34-74 18-62 (76)
194 PRK09401 reverse gyrase; Revie 84.2 16 0.00036 33.7 10.6 99 33-132 102-209 (1176)
195 cd01524 RHOD_Pyr_redox Member 84.1 2.4 5.3E-05 26.0 4.1 38 52-89 49-86 (90)
196 cd03028 GRX_PICOT_like Glutare 83.9 7.9 0.00017 23.9 7.5 58 54-112 7-70 (90)
197 COG4098 comFA Superfamily II D 83.0 4.1 8.9E-05 32.3 5.6 64 30-93 120-185 (441)
198 PRK11634 ATP-dependent RNA hel 82.6 23 0.00051 30.4 10.5 94 34-132 51-157 (629)
199 PF04364 DNA_pol3_chi: DNA pol 82.5 2.4 5.2E-05 28.7 3.8 37 40-76 15-51 (137)
200 cd03418 GRX_GRXb_1_3_like Glut 81.8 8.1 0.00017 22.5 7.7 58 57-114 2-60 (75)
201 TIGR00376 DNA helicase, putati 81.8 6.2 0.00014 33.8 6.8 53 35-87 182-234 (637)
202 cd06533 Glyco_transf_WecG_TagA 81.0 16 0.00036 25.6 9.2 73 38-111 30-105 (171)
203 TIGR01389 recQ ATP-dependent D 80.6 22 0.00049 30.0 9.7 82 31-116 33-114 (591)
204 PRK10824 glutaredoxin-4; Provi 80.5 14 0.0003 24.3 8.4 67 46-114 7-79 (115)
205 PF03808 Glyco_tran_WecB: Glyc 80.4 17 0.00037 25.4 9.1 74 38-112 32-108 (172)
206 COG2179 Predicted hydrolase of 80.1 18 0.0004 25.5 10.2 121 20-145 28-151 (175)
207 PRK10590 ATP-dependent RNA hel 80.0 31 0.00067 28.1 10.8 95 33-132 45-157 (456)
208 PRK04537 ATP-dependent RNA hel 79.9 27 0.00058 29.6 9.9 95 33-132 53-167 (572)
209 PRK11192 ATP-dependent RNA hel 79.3 31 0.00068 27.8 10.8 95 33-132 45-155 (434)
210 PRK04837 ATP-dependent RNA hel 78.3 33 0.00072 27.5 10.9 95 33-132 52-165 (423)
211 TIGR03817 DECH_helic helicase/ 77.6 29 0.00062 30.5 9.6 96 33-134 58-167 (742)
212 PRK11057 ATP-dependent DNA hel 77.6 38 0.00081 28.9 10.1 80 32-115 46-125 (607)
213 cd01523 RHOD_Lact_B Member of 77.6 4.8 0.0001 25.1 3.9 38 52-89 59-96 (100)
214 PTZ00110 helicase; Provisional 77.1 36 0.00078 28.6 9.8 95 33-132 174-285 (545)
215 cd01520 RHOD_YbbB Member of th 76.9 10 0.00022 25.1 5.4 39 52-90 84-123 (128)
216 TIGR00696 wecB_tagA_cpsF bacte 76.3 25 0.00054 25.0 9.6 64 39-102 33-98 (177)
217 PF13086 AAA_11: AAA domain; P 76.1 15 0.00033 26.1 6.7 42 35-76 26-75 (236)
218 PF00270 DEAD: DEAD/DEAH box h 76.0 21 0.00046 24.1 9.1 95 33-132 21-127 (169)
219 cd03027 GRX_DEP Glutaredoxin ( 75.8 13 0.00029 21.6 7.5 60 56-116 2-62 (73)
220 TIGR02717 AcCoA-syn-alpha acet 75.8 29 0.00062 28.4 8.7 85 55-160 151-237 (447)
221 cd01528 RHOD_2 Member of the R 75.3 14 0.0003 23.0 5.6 38 53-90 57-95 (101)
222 smart00450 RHOD Rhodanese Homo 75.2 7.6 0.00016 23.5 4.3 39 52-90 54-93 (100)
223 KOG0352|consensus 74.6 6.9 0.00015 32.0 4.7 63 55-117 62-125 (641)
224 cd01449 TST_Repeat_2 Thiosulfa 73.4 17 0.00036 23.3 5.7 49 41-89 64-114 (118)
225 cd01529 4RHOD_Repeats Member o 73.0 10 0.00022 23.5 4.4 38 52-89 54-92 (96)
226 PRK06381 threonine synthase; V 73.0 34 0.00073 26.4 8.2 68 33-100 41-108 (319)
227 KOG0385|consensus 72.9 26 0.00056 30.9 7.8 83 37-121 197-283 (971)
228 cd01534 4RHOD_Repeat_3 Member 72.7 7.6 0.00016 24.0 3.8 36 54-89 56-91 (95)
229 COG0513 SrmB Superfamily II DN 71.8 58 0.0013 27.2 10.2 94 34-132 74-182 (513)
230 TIGR01138 cysM cysteine syntha 71.6 36 0.00078 26.0 8.0 68 33-100 33-104 (290)
231 PLN03137 ATP-dependent DNA hel 70.3 56 0.0012 30.3 9.6 81 33-116 482-563 (1195)
232 cd01533 4RHOD_Repeat_2 Member 70.1 21 0.00046 22.5 5.6 48 43-90 54-104 (109)
233 COG0610 Type I site-specific r 69.3 12 0.00026 33.7 5.5 60 93-153 580-639 (962)
234 PF11019 DUF2608: Protein of u 69.3 27 0.00059 26.2 6.7 59 27-85 151-209 (252)
235 cd01526 RHOD_ThiF Member of th 68.2 8.5 0.00018 25.1 3.4 39 52-90 70-110 (122)
236 cd06448 L-Ser-dehyd Serine deh 67.8 41 0.00089 26.1 7.6 68 33-100 26-96 (316)
237 cd01518 RHOD_YceA Member of th 67.5 9.9 0.00021 23.7 3.5 38 52-89 59-97 (101)
238 COG0300 DltE Short-chain dehyd 67.4 53 0.0012 25.0 8.8 75 45-121 21-97 (265)
239 PRK13767 ATP-dependent helicas 67.3 63 0.0014 29.0 9.5 95 33-132 54-180 (876)
240 cd01561 CBS_like CBS_like: Thi 67.3 53 0.0011 24.9 8.1 68 33-100 27-98 (291)
241 PF00291 PALP: Pyridoxal-phosp 67.0 53 0.0011 24.8 8.8 67 34-100 35-101 (306)
242 PF04007 DUF354: Protein of un 66.8 42 0.00091 26.4 7.5 47 37-86 10-56 (335)
243 PRK11761 cysM cysteine synthas 66.4 57 0.0012 25.0 9.1 77 32-112 36-116 (296)
244 KOG0347|consensus 66.2 37 0.00079 28.9 7.2 47 53-99 260-312 (731)
245 cd03031 GRX_GRX_like Glutaredo 66.1 40 0.00087 23.2 7.7 46 56-101 1-53 (147)
246 COG2247 LytB Putative cell wal 66.1 48 0.001 26.0 7.4 68 42-112 67-139 (337)
247 COG0553 HepA Superfamily II DN 65.6 1.3 2.7E-05 38.7 -1.3 39 112-152 485-523 (866)
248 PLN00206 DEAD-box ATP-dependen 65.5 80 0.0017 26.3 10.1 95 33-132 165-278 (518)
249 cd01525 RHOD_Kc Member of the 65.4 14 0.00029 23.1 3.9 36 54-89 65-101 (105)
250 cd01521 RHOD_PspE2 Member of t 65.2 18 0.00039 23.0 4.5 39 52-90 62-102 (110)
251 cd01447 Polysulfide_ST Polysul 65.0 9.8 0.00021 23.6 3.2 38 52-89 59-97 (103)
252 cd01527 RHOD_YgaP Member of th 65.0 19 0.0004 22.3 4.5 39 52-90 52-91 (99)
253 COG0514 RecQ Superfamily II DN 64.7 26 0.00056 29.9 6.2 82 32-117 38-119 (590)
254 KOG1133|consensus 64.6 1E+02 0.0022 27.2 11.9 79 54-136 629-721 (821)
255 TIGR00963 secA preprotein tran 64.5 83 0.0018 27.8 9.3 65 33-97 76-144 (745)
256 KOG1805|consensus 64.5 86 0.0019 28.6 9.4 61 27-87 684-746 (1100)
257 PLN00125 Succinyl-CoA ligase [ 64.3 46 0.00099 25.8 7.1 62 55-116 151-216 (300)
258 PRK01122 potassium-transportin 64.1 88 0.0019 27.3 9.4 104 44-148 414-565 (679)
259 PRK09189 uroporphyrinogen-III 64.1 39 0.00085 24.8 6.6 76 40-116 104-182 (240)
260 PRK12898 secA preprotein trans 64.0 66 0.0014 27.9 8.6 63 33-95 123-189 (656)
261 cd01448 TST_Repeat_1 Thiosulfa 64.0 22 0.00048 22.9 4.8 49 42-90 66-117 (122)
262 PHA02558 uvsW UvsW helicase; P 64.0 75 0.0016 26.4 8.9 44 33-76 136-180 (501)
263 cd01519 RHOD_HSP67B2 Member of 63.8 15 0.00032 22.9 3.9 37 53-89 65-102 (106)
264 COG2927 HolC DNA polymerase II 63.4 30 0.00064 23.8 5.3 37 39-75 13-50 (144)
265 PRK15483 type III restriction- 63.1 6 0.00013 35.6 2.4 46 106-151 501-546 (986)
266 PF07652 Flavi_DEAD: Flaviviru 62.8 14 0.00029 25.6 3.6 104 35-150 13-121 (148)
267 cd01535 4RHOD_Repeat_4 Member 62.2 38 0.00083 23.0 5.9 50 41-91 37-87 (145)
268 TIGR03167 tRNA_sel_U_synt tRNA 61.7 33 0.00072 26.7 6.0 39 53-91 73-112 (311)
269 PHA03371 circ protein; Provisi 61.5 7.9 0.00017 28.6 2.4 45 115-159 29-87 (240)
270 COG1111 MPH1 ERCC4-like helica 60.9 85 0.0018 26.4 8.3 96 31-132 34-139 (542)
271 TIGR02621 cas3_GSU0051 CRISPR- 60.9 61 0.0013 29.0 8.0 111 33-149 38-195 (844)
272 cd01563 Thr-synth_1 Threonine 60.9 71 0.0015 24.6 7.8 68 33-100 48-115 (324)
273 PRK08329 threonine synthase; V 60.5 81 0.0018 24.8 9.6 68 33-100 82-149 (347)
274 cd00640 Trp-synth-beta_II Tryp 60.5 65 0.0014 23.6 9.9 67 34-100 26-95 (244)
275 cd01445 TST_Repeats Thiosulfat 60.4 36 0.00077 22.9 5.4 49 41-89 81-134 (138)
276 PRK13958 N-(5'-phosphoribosyl) 60.1 56 0.0012 23.7 6.7 53 40-94 39-91 (207)
277 PRK01297 ATP-dependent RNA hel 60.1 95 0.0021 25.4 10.5 96 33-132 131-245 (475)
278 PRK10329 glutaredoxin-like pro 59.9 36 0.00079 20.6 7.5 42 56-97 2-44 (81)
279 PRK05320 rhodanese superfamily 59.8 17 0.00036 27.5 4.0 39 53-91 174-213 (257)
280 PF02492 cobW: CobW/HypB/UreG, 59.7 43 0.00093 23.4 5.9 76 36-112 10-91 (178)
281 PF13344 Hydrolase_6: Haloacid 59.3 18 0.00039 22.9 3.6 39 43-81 19-58 (101)
282 PF00581 Rhodanese: Rhodanese- 59.2 27 0.00059 21.7 4.5 39 52-90 65-109 (113)
283 TIGR01139 cysK cysteine syntha 58.9 79 0.0017 24.1 7.8 68 33-100 31-102 (298)
284 PLN02356 phosphateglycerate ki 56.9 1.1E+02 0.0023 25.1 10.3 70 31-100 76-149 (423)
285 TIGR01136 cysKM cysteine synth 56.6 87 0.0019 23.9 7.8 68 33-100 32-103 (299)
286 cd01444 GlpE_ST GlpE sulfurtra 56.1 26 0.00057 21.3 4.0 46 43-89 46-92 (96)
287 PF09419 PGP_phosphatase: Mito 55.9 70 0.0015 22.6 6.9 57 42-102 63-129 (168)
288 PRK14873 primosome assembly pr 55.5 46 0.00099 28.9 6.3 76 68-158 441-534 (665)
289 PRK01222 N-(5'-phosphoribosyl) 54.9 80 0.0017 23.0 6.9 55 40-96 41-95 (210)
290 PF12622 NpwBP: mRNA biogenesi 54.7 6.9 0.00015 21.5 0.9 12 127-138 3-14 (48)
291 cd01562 Thr-dehyd Threonine de 54.2 95 0.0021 23.6 8.3 68 33-100 42-110 (304)
292 cd01532 4RHOD_Repeat_1 Member 52.8 34 0.00074 20.9 4.1 36 54-89 50-88 (92)
293 cd00158 RHOD Rhodanese Homolog 52.4 40 0.00086 19.8 4.3 38 52-89 48-86 (89)
294 PRK07476 eutB threonine dehydr 52.2 74 0.0016 24.6 6.6 68 33-100 44-112 (322)
295 COG1204 Superfamily II helicas 52.1 1E+02 0.0022 27.3 8.0 58 33-90 54-115 (766)
296 PRK10717 cysteine synthase A; 51.7 1.1E+02 0.0024 23.7 7.9 68 33-100 38-109 (330)
297 PF10740 DUF2529: Protein of u 51.3 34 0.00074 24.3 4.1 33 53-85 81-115 (172)
298 cd01522 RHOD_1 Member of the R 50.9 55 0.0012 21.1 5.0 38 52-89 62-100 (117)
299 PF10412 TrwB_AAD_bind: Type I 50.5 37 0.00079 27.2 4.8 38 35-72 24-61 (386)
300 TIGR03865 PQQ_CXXCW PQQ-depend 50.5 69 0.0015 22.2 5.7 49 43-91 103-155 (162)
301 PTZ00424 helicase 45; Provisio 50.1 1.3E+02 0.0027 23.8 10.7 95 33-132 72-178 (401)
302 PRK02362 ski2-like helicase; P 50.1 73 0.0016 27.8 6.9 58 33-91 46-107 (737)
303 TIGR01137 cysta_beta cystathio 49.9 1.3E+02 0.0027 24.5 7.9 68 33-100 36-107 (454)
304 PRK09200 preprotein translocas 49.7 1.4E+02 0.003 26.6 8.4 63 33-95 98-165 (790)
305 PLN02160 thiosulfate sulfurtra 49.7 49 0.0011 22.2 4.7 39 52-90 79-118 (136)
306 COG4152 ABC-type uncharacteriz 49.2 1.2E+02 0.0026 23.3 7.2 83 38-130 164-248 (300)
307 PRK03692 putative UDP-N-acetyl 49.2 1.1E+02 0.0024 22.9 9.6 72 39-111 90-163 (243)
308 TIGR00260 thrC threonine synth 49.0 1.2E+02 0.0027 23.4 8.8 68 33-100 49-117 (328)
309 PRK10638 glutaredoxin 3; Provi 48.7 57 0.0012 19.5 7.4 42 56-97 3-45 (83)
310 PRK05638 threonine synthase; V 48.2 1.5E+02 0.0033 24.2 9.1 69 32-100 89-157 (442)
311 PLN00011 cysteine synthase 48.1 1.3E+02 0.0028 23.4 9.2 68 33-100 42-114 (323)
312 PRK11784 tRNA 2-selenouridine 47.9 1.3E+02 0.0029 23.8 7.4 48 53-101 87-135 (345)
313 PF04851 ResIII: Type III rest 47.7 82 0.0018 21.3 5.8 40 33-75 32-71 (184)
314 COG0608 RecJ Single-stranded D 47.5 1.6E+02 0.0035 24.4 8.3 92 39-134 21-122 (491)
315 PRK00254 ski2-like helicase; P 47.2 1.1E+02 0.0023 26.7 7.4 59 33-91 46-108 (720)
316 PRK10287 thiosulfate:cyanide s 46.5 76 0.0016 20.2 6.0 47 43-89 48-95 (104)
317 KOG3849|consensus 46.3 77 0.0017 24.5 5.5 54 36-89 280-335 (386)
318 PRK11493 sseA 3-mercaptopyruva 46.0 72 0.0016 24.1 5.6 50 41-90 217-268 (281)
319 TIGR02981 phageshock_pspE phag 45.6 77 0.0017 20.0 6.2 37 53-89 57-93 (101)
320 PRK00162 glpE thiosulfate sulf 45.0 76 0.0017 19.9 5.3 47 43-90 48-95 (108)
321 KOG0389|consensus 44.5 2.1E+02 0.0045 25.8 8.4 94 37-132 429-532 (941)
322 PRK12326 preprotein translocas 44.1 2E+02 0.0043 25.6 8.3 65 33-97 98-166 (764)
323 KOG0701|consensus 43.7 12 0.00025 35.6 1.1 94 56-151 294-399 (1606)
324 PF04312 DUF460: Protein of un 43.0 55 0.0012 22.3 4.0 64 35-101 57-123 (138)
325 PLN02819 lysine-ketoglutarate 42.9 1.2E+02 0.0027 27.9 7.2 101 44-148 662-767 (1042)
326 PRK07409 threonine synthase; V 42.9 1.6E+02 0.0036 23.1 9.1 68 33-100 56-124 (353)
327 COG1201 Lhr Lhr-like helicases 42.8 74 0.0016 28.4 5.7 95 33-132 44-157 (814)
328 cd01124 KaiC KaiC is a circadi 42.6 70 0.0015 22.0 4.8 44 35-79 8-51 (187)
329 PRK06608 threonine dehydratase 42.5 1.7E+02 0.0036 23.0 9.0 68 33-100 48-117 (338)
330 PLN02723 3-mercaptopyruvate su 42.5 97 0.0021 24.1 5.9 49 41-89 255-305 (320)
331 PRK06553 lipid A biosynthesis 42.4 1.4E+02 0.003 23.0 6.8 56 46-101 124-179 (308)
332 PRK06352 threonine synthase; V 42.1 1.7E+02 0.0037 23.0 9.3 68 33-100 53-121 (351)
333 COG3587 Restriction endonuclea 42.0 23 0.00049 31.6 2.5 48 104-151 481-528 (985)
334 PF01591 6PF2K: 6-phosphofruct 41.7 75 0.0016 23.5 4.9 45 68-113 85-130 (222)
335 PRK09860 putative alcohol dehy 41.4 1.8E+02 0.004 23.2 8.2 20 67-86 48-67 (383)
336 cd05212 NAD_bind_m-THF_DH_Cycl 41.4 1.1E+02 0.0024 20.7 6.6 89 39-135 11-103 (140)
337 PRK08197 threonine synthase; V 41.1 1.9E+02 0.004 23.2 9.5 68 33-100 105-172 (394)
338 PRK11493 sseA 3-mercaptopyruva 40.6 75 0.0016 24.1 5.0 52 39-90 71-125 (281)
339 COG1560 HtrB Lauroyl/myristoyl 40.2 1.6E+02 0.0035 22.9 6.8 42 45-86 113-154 (308)
340 TIGR02196 GlrX_YruB Glutaredox 40.2 68 0.0015 17.9 7.2 44 58-101 3-47 (74)
341 COG1922 WecG Teichoic acid bio 40.0 1.6E+02 0.0036 22.3 9.4 73 38-111 92-167 (253)
342 PRK13103 secA preprotein trans 40.0 1.9E+02 0.0041 26.3 7.7 66 33-98 102-171 (913)
343 COG0541 Ffh Signal recognition 39.7 2.2E+02 0.0047 23.6 9.0 76 36-112 110-189 (451)
344 PRK07591 threonine synthase; V 39.7 2.1E+02 0.0045 23.3 9.3 76 33-112 115-190 (421)
345 PRK12906 secA preprotein trans 39.2 2.1E+02 0.0045 25.6 7.8 70 28-97 95-168 (796)
346 COG2607 Predicted ATPase (AAA+ 38.9 44 0.00096 25.4 3.3 26 37-62 121-146 (287)
347 PF09413 DUF2007: Domain of un 38.8 75 0.0016 18.1 3.8 30 58-87 3-32 (67)
348 PRK13700 conjugal transfer pro 38.6 42 0.00091 29.4 3.6 36 36-71 195-230 (732)
349 COG2519 GCD14 tRNA(1-methylade 38.5 1E+02 0.0022 23.4 5.2 33 48-80 182-214 (256)
350 PRK06450 threonine synthase; V 38.5 1.9E+02 0.0042 22.7 9.4 72 29-100 71-142 (338)
351 KOG1803|consensus 37.0 51 0.0011 28.2 3.7 40 36-75 211-250 (649)
352 PF00580 UvrD-helicase: UvrD/R 36.9 1.3E+02 0.0028 22.5 5.8 43 34-76 21-67 (315)
353 TIGR00511 ribulose_e2b2 ribose 36.8 2E+02 0.0043 22.3 8.9 76 51-130 113-189 (301)
354 PF01008 IF-2B: Initiation fac 36.8 1.1E+02 0.0024 23.0 5.4 77 51-131 105-183 (282)
355 PRK06721 threonine synthase; R 36.3 2.1E+02 0.0046 22.5 9.4 76 33-112 53-129 (352)
356 KOG0780|consensus 36.0 2.5E+02 0.0053 23.1 7.3 78 36-114 111-192 (483)
357 PRK00142 putative rhodanese-re 36.0 46 0.001 25.9 3.2 40 53-92 170-210 (314)
358 COG0607 PspE Rhodanese-related 35.5 45 0.00097 20.7 2.7 38 52-89 59-97 (110)
359 PRK08335 translation initiatio 35.2 2.1E+02 0.0045 22.0 9.1 77 50-130 106-183 (275)
360 PRK13104 secA preprotein trans 35.2 3.3E+02 0.0072 24.8 8.5 70 28-97 97-170 (896)
361 PF00782 DSPc: Dual specificit 35.0 68 0.0015 20.8 3.6 27 37-63 56-82 (133)
362 TIGR00096 probable S-adenosylm 34.9 1.8E+02 0.0039 22.3 6.2 42 58-100 28-69 (276)
363 PF13604 AAA_30: AAA domain; P 34.9 1.6E+02 0.0035 20.9 5.7 39 36-74 28-66 (196)
364 KOG0925|consensus 34.4 2.9E+02 0.0063 23.5 8.1 99 53-155 252-377 (699)
365 cd01446 DSP_MapKP N-terminal r 34.2 91 0.002 20.4 4.1 37 53-89 74-122 (132)
366 PRK06260 threonine synthase; V 34.1 2.5E+02 0.0053 22.6 9.3 68 33-100 93-161 (397)
367 COG0626 MetC Cystathionine bet 33.8 2.6E+02 0.0056 22.7 8.7 113 36-151 61-175 (396)
368 PRK08535 translation initiatio 33.5 2.3E+02 0.005 22.0 9.0 76 51-130 118-194 (310)
369 PF00702 Hydrolase: haloacid d 33.5 1.7E+02 0.0036 20.4 6.7 57 43-101 132-192 (215)
370 PLN02522 ATP citrate (pro-S)-l 33.2 3.2E+02 0.007 23.6 9.8 60 55-114 168-231 (608)
371 PRK00377 cbiT cobalt-precorrin 33.2 1.6E+02 0.0034 20.8 5.5 35 50-84 134-168 (198)
372 cd08186 Fe-ADH8 Iron-containin 33.1 2.5E+02 0.0054 22.3 9.5 64 38-101 9-81 (383)
373 cd01443 Cdc25_Acr2p Cdc25 enzy 32.9 1.2E+02 0.0026 19.1 4.4 36 54-89 66-109 (113)
374 PLN02363 phosphoribosylanthran 32.9 2.2E+02 0.0047 21.5 6.5 52 40-93 85-137 (256)
375 TIGR02991 ectoine_eutB ectoine 32.7 2.3E+02 0.0051 21.9 8.8 68 33-100 44-112 (317)
376 cd08191 HHD 6-hydroxyhexanoate 32.7 2.6E+02 0.0056 22.3 8.9 48 38-88 9-60 (386)
377 TIGR01274 ACC_deam 1-aminocycl 32.7 2.4E+02 0.0052 22.0 7.3 65 36-100 47-121 (337)
378 KOG0339|consensus 32.6 3.2E+02 0.0069 23.4 12.4 122 33-159 267-407 (731)
379 PTZ00187 succinyl-CoA syntheta 32.5 2.5E+02 0.0053 22.1 9.4 62 55-116 170-235 (317)
380 KOG1503|consensus 32.3 1.2E+02 0.0027 22.9 4.7 52 41-92 153-204 (354)
381 TIGR01127 ilvA_1Cterm threonin 32.1 2.6E+02 0.0056 22.2 7.5 68 33-100 25-93 (380)
382 PRK08762 molybdopterin biosynt 31.9 1.6E+02 0.0036 23.3 5.8 45 43-87 45-91 (376)
383 PF06745 KaiC: KaiC; InterPro 31.8 92 0.002 22.5 4.1 44 35-79 28-72 (226)
384 smart00487 DEXDc DEAD-like hel 31.7 1.6E+02 0.0035 19.7 8.6 45 33-77 31-77 (201)
385 PF02602 HEM4: Uroporphyrinoge 31.1 76 0.0016 22.8 3.6 75 40-116 104-180 (231)
386 PRK07920 lipid A biosynthesis 31.1 2.4E+02 0.0052 21.5 7.3 54 47-100 100-153 (298)
387 PRK05973 replicative DNA helic 31.1 1.2E+02 0.0026 22.6 4.6 44 36-80 74-117 (237)
388 TIGR02634 xylF D-xylose ABC tr 30.8 2.3E+02 0.0051 21.3 6.7 39 51-89 25-65 (302)
389 PRK08943 lipid A biosynthesis 30.4 2.5E+02 0.0055 21.6 7.4 56 46-101 122-177 (314)
390 COG1435 Tdk Thymidine kinase [ 30.4 1.4E+02 0.0029 21.9 4.6 30 36-65 14-43 (201)
391 TIGR01275 ACC_deam_rel pyridox 30.2 2.5E+02 0.0054 21.5 7.2 65 36-100 37-104 (311)
392 PLN02565 cysteine synthase 29.9 2.7E+02 0.0058 21.7 9.4 72 29-100 36-112 (322)
393 TIGR01459 HAD-SF-IIA-hyp4 HAD- 29.9 1E+02 0.0022 22.6 4.1 42 40-81 26-67 (242)
394 COG0159 TrpA Tryptophan syntha 29.5 2.6E+02 0.0056 21.4 9.1 31 70-100 139-169 (265)
395 PRK09492 treR trehalose repres 29.5 2.4E+02 0.0053 21.1 7.9 77 43-120 163-247 (315)
396 PF02399 Herpes_ori_bp: Origin 29.4 1.6E+02 0.0034 26.4 5.5 45 35-79 58-103 (824)
397 PRK14974 cell division protein 29.3 2.9E+02 0.0062 21.8 9.3 48 35-82 149-199 (336)
398 COG3700 AphA Acid phosphatase 29.2 72 0.0016 23.0 3.0 88 42-129 118-217 (237)
399 PF01206 TusA: Sulfurtransfera 29.0 1.2E+02 0.0026 17.4 5.4 41 43-84 17-57 (70)
400 PF00532 Peripla_BP_1: Peripla 28.8 2.5E+02 0.0055 21.0 6.3 102 42-155 19-121 (279)
401 PF00462 Glutaredoxin: Glutare 28.8 1.1E+02 0.0023 16.8 7.2 44 58-101 2-46 (60)
402 PRK14045 1-aminocyclopropane-1 28.6 2.8E+02 0.0061 21.5 7.4 65 36-100 51-118 (329)
403 COG2241 CobL Precorrin-6B meth 28.5 1E+02 0.0022 22.6 3.8 50 27-80 117-166 (210)
404 TIGR02208 lipid_A_msbB lipid A 28.5 2.7E+02 0.0059 21.3 7.6 57 46-102 113-169 (305)
405 KOG0951|consensus 28.3 3.9E+02 0.0085 25.7 7.8 98 51-152 1356-1486(1674)
406 PF03279 Lip_A_acyltrans: Bact 28.1 2.6E+02 0.0057 21.1 6.6 50 51-100 117-166 (295)
407 COG0075 Serine-pyruvate aminot 27.5 3.3E+02 0.0072 22.0 7.7 48 39-87 65-112 (383)
408 PF12646 DUF3783: Domain of un 27.3 1.2E+02 0.0027 17.0 3.4 24 56-79 2-26 (58)
409 cd01542 PBP1_TreR_like Ligand- 27.2 2.4E+02 0.0051 20.2 6.8 41 48-88 23-65 (259)
410 PRK01415 hypothetical protein; 27.2 1.2E+02 0.0026 22.8 4.1 39 53-91 170-209 (247)
411 PRK10867 signal recognition pa 27.1 3.6E+02 0.0077 22.2 9.5 76 36-112 110-190 (433)
412 cd02066 GRX_family Glutaredoxi 27.1 1.2E+02 0.0025 16.6 7.7 40 57-96 2-42 (72)
413 PRK08006 replicative DNA helic 27.0 3.7E+02 0.0079 22.3 9.6 65 36-100 234-301 (471)
414 PF00265 TK: Thymidine kinase; 27.0 1E+02 0.0022 21.7 3.5 31 35-65 10-40 (176)
415 PF13905 Thioredoxin_8: Thiore 27.0 1.5E+02 0.0032 17.8 8.0 71 40-112 20-90 (95)
416 TIGR03877 thermo_KaiC_1 KaiC d 27.0 1.7E+02 0.0038 21.4 4.9 44 35-79 30-73 (237)
417 PF01583 APS_kinase: Adenylyls 26.9 1.9E+02 0.0042 20.0 4.8 37 65-101 17-64 (156)
418 PF00448 SRP54: SRP54-type pro 26.9 2.4E+02 0.0052 20.2 8.0 50 34-83 9-61 (196)
419 PRK07411 hypothetical protein; 26.8 1.1E+02 0.0024 24.5 4.1 38 53-90 341-378 (390)
420 PRK14010 potassium-transportin 26.8 3.5E+02 0.0076 23.7 7.2 103 43-147 409-560 (673)
421 TIGR03190 benz_CoA_bzdN benzoy 26.7 2.9E+02 0.0063 22.0 6.4 53 38-90 300-355 (377)
422 cd08172 GlyDH-like1 Glycerol d 26.7 3.1E+02 0.0068 21.4 9.2 45 56-100 52-98 (347)
423 TIGR00537 hemK_rel_arch HemK-r 26.7 2.2E+02 0.0048 19.6 5.7 37 49-85 128-164 (179)
424 PF02739 5_3_exonuc_N: 5'-3' e 26.3 2.2E+02 0.0049 19.8 5.1 47 67-114 88-134 (169)
425 PF02875 Mur_ligase_C: Mur lig 26.1 1.6E+02 0.0034 17.8 5.5 52 39-91 26-84 (91)
426 cd00291 SirA_YedF_YeeD SirA, Y 26.1 1.3E+02 0.0029 16.9 6.0 34 52-85 24-57 (69)
427 PRK08246 threonine dehydratase 26.0 3.1E+02 0.0067 21.1 8.1 67 33-100 47-113 (310)
428 PRK08198 threonine dehydratase 26.0 3.5E+02 0.0075 21.7 7.6 69 32-100 46-115 (404)
429 KOG0351|consensus 25.9 2E+02 0.0044 26.3 5.7 61 57-117 307-368 (941)
430 CHL00200 trpA tryptophan synth 25.9 3E+02 0.0064 20.9 9.1 31 70-100 136-166 (263)
431 PRK05597 molybdopterin biosynt 25.8 1.1E+02 0.0024 24.2 3.9 38 53-90 313-351 (355)
432 TIGR03880 KaiC_arch_3 KaiC dom 25.7 1.9E+02 0.0041 20.8 4.8 26 36-61 26-51 (224)
433 PRK06548 ribonuclease H; Provi 25.6 2.4E+02 0.0052 19.7 5.4 41 40-80 47-90 (161)
434 PRK08506 replicative DNA helic 25.6 3.9E+02 0.0084 22.1 8.8 63 36-98 202-266 (472)
435 PRK05928 hemD uroporphyrinogen 25.6 2.6E+02 0.0056 20.1 6.5 43 39-82 110-152 (249)
436 TIGR01019 sucCoAalpha succinyl 25.5 3.2E+02 0.0069 21.1 7.4 63 55-117 144-210 (286)
437 PRK11070 ssDNA exonuclease Rec 25.4 4.3E+02 0.0094 22.6 8.5 41 39-79 54-98 (575)
438 PRK01172 ski2-like helicase; P 25.4 3.8E+02 0.0083 23.1 7.3 58 33-90 44-104 (674)
439 cd03789 GT1_LPS_heptosyltransf 25.3 2.9E+02 0.0062 20.5 8.7 85 41-133 140-226 (279)
440 PLN02591 tryptophan synthase 25.1 3E+02 0.0065 20.7 9.6 29 72-100 125-153 (250)
441 PLN02331 phosphoribosylglycina 25.0 2.8E+02 0.006 20.2 7.7 97 37-138 10-113 (207)
442 PRK06110 hypothetical protein; 25.0 3.3E+02 0.0071 21.1 7.8 68 33-100 46-115 (322)
443 PF11823 DUF3343: Protein of u 24.8 1.6E+02 0.0034 17.3 4.7 29 56-84 3-31 (73)
444 cd02067 B12-binding B12 bindin 24.6 2E+02 0.0042 18.3 6.5 21 67-87 39-59 (119)
445 KOG4175|consensus 24.5 3E+02 0.0064 20.4 8.6 54 64-121 134-187 (268)
446 COG1184 GCD2 Translation initi 24.4 3.5E+02 0.0075 21.1 8.6 78 51-132 117-195 (301)
447 PRK07048 serine/threonine dehy 24.2 3.4E+02 0.0073 20.9 7.3 68 33-100 49-117 (321)
448 cd06280 PBP1_LacI_like_4 Ligan 24.2 2.8E+02 0.0061 20.0 6.8 46 45-90 20-67 (263)
449 PF00465 Fe-ADH: Iron-containi 24.1 3.6E+02 0.0078 21.2 7.8 19 67-85 38-56 (366)
450 PF03796 DnaB_C: DnaB-like hel 24.1 2.6E+02 0.0057 20.6 5.5 63 36-98 29-94 (259)
451 PF01935 DUF87: Domain of unkn 24.0 1.2E+02 0.0026 21.8 3.6 38 33-70 30-68 (229)
452 PF03198 Glyco_hydro_72: Gluca 23.9 2.4E+02 0.0051 22.2 5.1 73 67-149 55-129 (314)
453 PF13167 GTP-bdg_N: GTP-bindin 23.9 2E+02 0.0043 18.2 4.6 34 67-100 46-79 (95)
454 PRK13556 azoreductase; Provisi 23.8 97 0.0021 22.2 3.0 30 122-151 87-119 (208)
455 TIGR01425 SRP54_euk signal rec 23.6 4.2E+02 0.0091 21.8 9.8 78 35-113 109-190 (429)
456 PRK12904 preprotein translocas 23.6 5.6E+02 0.012 23.2 9.0 77 21-97 89-169 (830)
457 cd03030 GRX_SH3BGR Glutaredoxi 23.5 2E+02 0.0042 18.0 7.2 36 65-100 17-52 (92)
458 PF03602 Cons_hypoth95: Conser 23.4 99 0.0021 21.9 2.9 26 124-149 113-139 (183)
459 KOG1180|consensus 23.2 3.5E+02 0.0076 23.4 6.2 73 55-133 116-194 (678)
460 PRK09629 bifunctional thiosulf 23.1 2.3E+02 0.0049 24.4 5.4 51 41-91 209-261 (610)
461 COG0467 RAD55 RecA-superfamily 23.0 2E+02 0.0044 21.3 4.7 43 36-79 33-75 (260)
462 KOG3432|consensus 22.8 2.3E+02 0.005 18.6 4.5 36 77-112 34-69 (121)
463 cd01530 Cdc25 Cdc25 phosphatas 22.8 1.6E+02 0.0035 19.0 3.7 37 53-89 67-117 (121)
464 cd06315 PBP1_ABC_sugar_binding 22.6 3.2E+02 0.0069 20.1 6.2 48 41-88 17-66 (280)
465 PF03205 MobB: Molybdopterin g 22.6 1.6E+02 0.0034 19.8 3.7 29 35-63 9-37 (140)
466 PRK12390 1-aminocyclopropane-1 22.4 3.8E+02 0.0082 20.9 8.5 52 36-87 48-101 (337)
467 PF03709 OKR_DC_1_N: Orn/Lys/A 22.3 2.3E+02 0.0049 18.3 8.3 105 39-147 2-111 (115)
468 PRK04328 hypothetical protein; 22.3 2.1E+02 0.0046 21.2 4.6 43 36-79 33-75 (249)
469 cd06449 ACCD Aminocyclopropane 22.2 3.6E+02 0.0079 20.6 8.5 65 36-100 33-107 (307)
470 PF07013 DUF1314: Protein of u 22.1 2.1E+02 0.0046 20.3 4.2 33 127-159 32-64 (177)
471 cd05014 SIS_Kpsf KpsF-like pro 22.1 1.2E+02 0.0025 19.5 2.9 38 52-89 46-85 (128)
472 TIGR02744 TrbI_Ftype type-F co 22.0 2.4E+02 0.0053 18.5 5.7 61 54-123 30-100 (112)
473 COG0159 TrpA Tryptophan syntha 22.0 3.7E+02 0.008 20.6 9.3 78 38-116 76-159 (265)
474 TIGR01587 cas3_core CRISPR-ass 21.9 3.8E+02 0.0082 20.7 6.8 56 33-88 6-64 (358)
475 cd02931 ER_like_FMN Enoate red 21.8 2.9E+02 0.0064 22.1 5.6 51 38-88 199-275 (382)
476 PRK01355 azoreductase; Reviewe 21.8 1.1E+02 0.0025 21.7 3.0 31 121-151 74-107 (199)
477 PF07315 DUF1462: Protein of u 21.6 1.7E+02 0.0036 18.5 3.2 58 63-120 18-82 (93)
478 PF13173 AAA_14: AAA domain 21.5 2.4E+02 0.0052 18.2 7.1 78 36-115 12-99 (128)
479 COG1099 Predicted metal-depend 21.4 3.6E+02 0.0079 20.3 6.3 78 37-121 137-218 (254)
480 TIGR00273 iron-sulfur cluster- 21.3 3.7E+02 0.0081 22.1 6.1 38 52-89 62-99 (432)
481 COG0529 CysC Adenylylsulfate k 21.3 3.3E+02 0.0072 19.8 5.1 37 63-99 36-83 (197)
482 KOG1802|consensus 21.3 2.5E+02 0.0054 24.9 5.1 51 36-86 435-486 (935)
483 PRK13555 azoreductase; Provisi 21.3 1.4E+02 0.0029 21.7 3.3 30 122-151 87-119 (208)
484 smart00195 DSPc Dual specifici 21.2 1.5E+02 0.0032 19.4 3.3 25 39-63 63-87 (138)
485 COG3260 Ni,Fe-hydrogenase III 21.1 2.9E+02 0.0062 19.0 4.8 53 80-132 51-110 (148)
486 TIGR01524 ATPase-IIIB_Mg magne 21.1 6.2E+02 0.014 22.9 8.5 107 37-146 515-658 (867)
487 KOG3201|consensus 21.0 3.1E+02 0.0066 19.7 4.8 46 43-89 122-168 (201)
488 smart00115 CASc Caspase, inter 20.9 3.5E+02 0.0076 20.0 9.7 47 55-102 9-66 (241)
489 KOG0921|consensus 20.7 1.6E+02 0.0036 26.9 4.1 95 54-150 643-762 (1282)
490 KOG0391|consensus 20.6 3.6E+02 0.0078 25.9 6.1 84 36-121 644-731 (1958)
491 cd05008 SIS_GlmS_GlmD_1 SIS (S 20.6 1.2E+02 0.0026 19.4 2.7 35 54-88 47-83 (126)
492 PF14417 MEDS: MEDS: MEthanoge 20.5 2.5E+02 0.0055 19.8 4.6 39 39-77 32-70 (191)
493 PF00290 Trp_syntA: Tryptophan 20.5 3.9E+02 0.0084 20.3 7.4 76 37-113 68-149 (259)
494 PRK04914 ATP-dependent helicas 20.5 2.9E+02 0.0064 25.3 5.7 80 36-118 179-260 (956)
495 TIGR01957 nuoB_fam NADH-quinon 20.4 3E+02 0.0065 18.9 4.9 33 79-111 58-90 (145)
496 cd08187 BDH Butanol dehydrogen 20.3 4.5E+02 0.0097 20.9 9.7 65 34-101 11-83 (382)
497 PRK05678 succinyl-CoA syntheta 20.3 4.1E+02 0.009 20.5 7.2 62 55-116 146-211 (291)
498 PF02589 DUF162: Uncharacteris 20.2 3.1E+02 0.0068 19.1 5.2 46 104-149 98-143 (189)
499 PRK07878 molybdopterin biosynt 20.1 1.9E+02 0.0042 23.2 4.3 39 52-90 341-380 (392)
500 PRK04930 glutathione-regulated 20.0 1E+02 0.0022 22.0 2.4 31 121-151 58-91 (184)
No 1
>KOG0385|consensus
Probab=99.97 E-value=1.7e-30 Score=210.86 Aligned_cols=149 Identities=50% Similarity=0.798 Sum_probs=134.7
Q ss_pred cchhccchhhhhhhc---CCCCccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCC
Q psy13224 12 KLRLLHPVTSAMCTQ---FPDPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTT 88 (160)
Q Consensus 12 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~ 88 (160)
.--|+||++..-..+ +....-+...|+|+..|.+||..+++.|.+||||+++..++|.|++++.-+++.|+.++|++
T Consensus 442 RKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt 521 (971)
T KOG0385|consen 442 RKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGST 521 (971)
T ss_pred HHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCC
Confidence 345799998766443 22222356679999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhccCC-CceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEeC
Q psy13224 89 KVDQRQVLMERFNMDA-RIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 160 (160)
Q Consensus 89 ~~~~r~~~~~~f~~~~-~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~r 160 (160)
+.++|...++.|+.++ ...|+|++|.++|.|+|+..|++||+||.+|||..-.|++.|+||+||+|+|.|||
T Consensus 522 ~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~R 594 (971)
T KOG0385|consen 522 SHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYR 594 (971)
T ss_pred CcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEE
Confidence 9999999999999654 58889999999999999999999999999999999999999999999999999997
No 2
>KOG0387|consensus
Probab=99.97 E-value=8.6e-30 Score=207.32 Aligned_cols=148 Identities=47% Similarity=0.763 Sum_probs=137.1
Q ss_pred chhccchhhhh----hhcCCCCccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHH-hcCCeEEEEECC
Q psy13224 13 LRLLHPVTSAM----CTQFPDPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLN-FHGHIYLRLDGT 87 (160)
Q Consensus 13 ~~~~~~~~~~~----~~~~~~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~-~~~~~~~~~~g~ 87 (160)
-.|+||.+..- ...-+|+...+..|+|+..+.+++..+..+|.++|+|+++..+++.|+..|. ..|+.|+.++|.
T Consensus 501 kICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGt 580 (923)
T KOG0387|consen 501 KICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGT 580 (923)
T ss_pred hhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCC
Confidence 45789976544 3445666566778999999999999999999999999999999999999999 689999999999
Q ss_pred CCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEeC
Q psy13224 88 TKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 160 (160)
Q Consensus 88 ~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~r 160 (160)
++.+.|..++++|++++...|+|++|.++|.|+||.+|+.||.|||.|||..-.|+..|+||+||+++|.|||
T Consensus 581 T~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYR 653 (923)
T KOG0387|consen 581 TPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYR 653 (923)
T ss_pred CccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEE
Confidence 9999999999999988999999999999999999999999999999999999999999999999999999997
No 3
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.97 E-value=1.1e-29 Score=216.54 Aligned_cols=150 Identities=46% Similarity=0.757 Sum_probs=130.7
Q ss_pred CcchhccchhhhhhhcCC---CCccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECC
Q psy13224 11 PKLRLLHPVTSAMCTQFP---DPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGT 87 (160)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~ 87 (160)
....++||++.......+ ....+...|+|+..|.++|..+...|.||||||++..+++.|.+.|...++.++.++|+
T Consensus 441 LRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGs 520 (1033)
T PLN03142 441 LRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGN 520 (1033)
T ss_pred HHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCC
Confidence 344578887754332211 11223446899999999999999899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhccCC-CceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEeC
Q psy13224 88 TKVDQRQVLMERFNMDA-RIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 160 (160)
Q Consensus 88 ~~~~~r~~~~~~f~~~~-~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~r 160 (160)
++..+|...++.|+.++ ...++|+++.++|.||||+.|++||+||++|||....||+||+||+||+++|.|||
T Consensus 521 ts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 521 TGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred CCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 99999999999998543 45688999999999999999999999999999999999999999999999999997
No 4
>KOG0391|consensus
Probab=99.96 E-value=1.3e-28 Score=206.26 Aligned_cols=143 Identities=80% Similarity=1.295 Sum_probs=137.2
Q ss_pred chhhhhhhcCCCCccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH
Q psy13224 18 PVTSAMCTQFPDPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLM 97 (160)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~ 97 (160)
.........|++..++.++++|+..|.-||..++..|+++|||++...++|.|+.+|.-+|+-|+.++|..+.++|+.++
T Consensus 1240 q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLm 1319 (1958)
T KOG0391|consen 1240 QTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALM 1319 (1958)
T ss_pred hccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHH
Confidence 33445567799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEeC
Q psy13224 98 ERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 160 (160)
Q Consensus 98 ~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~r 160 (160)
.+||.+....|+|+||.+++.|+||.++++|||||.+|||..-.|+-.|.|||||+++|+|||
T Consensus 1320 erFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYR 1382 (1958)
T KOG0391|consen 1320 ERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 1382 (1958)
T ss_pred HHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999998
No 5
>KOG0389|consensus
Probab=99.95 E-value=2.4e-27 Score=193.04 Aligned_cols=128 Identities=55% Similarity=0.898 Sum_probs=124.7
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS 112 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~ 112 (160)
.+..|+|.+.|.+||.+++..|++||||++|+.+++.|+..|...+++++.++|++...+|+.++++|+.+....|+|+|
T Consensus 756 ~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLS 835 (941)
T KOG0389|consen 756 LWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLS 835 (941)
T ss_pred hhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEe
Confidence 45579999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred ccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEeC
Q psy13224 113 TRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 160 (160)
Q Consensus 113 ~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~r 160 (160)
|.+||.|+||..|++||.+|-++||-.-.|+..|+||+||+|+|+|||
T Consensus 836 TKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~r 883 (941)
T KOG0389|consen 836 TKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYR 883 (941)
T ss_pred eccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEE
Confidence 999999999999999999999999999999999999999999999997
No 6
>KOG0384|consensus
Probab=99.94 E-value=3.8e-27 Score=198.54 Aligned_cols=151 Identities=48% Similarity=0.793 Sum_probs=133.2
Q ss_pred CCcchhccchhhhhhhc-----CCC------CccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcC
Q psy13224 10 RPKLRLLHPVTSAMCTQ-----FPD------PRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHG 78 (160)
Q Consensus 10 ~~~~~~~~~~~~~~~~~-----~~~------~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~ 78 (160)
+.+--|+||++...+.. +.+ ...+..+|+|+..|.+||-.+++.|++||||++...+++.|+++|..++
T Consensus 644 ELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ 723 (1373)
T KOG0384|consen 644 ELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRG 723 (1373)
T ss_pred HHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcC
Confidence 34455789987543322 221 1123446899999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCHHHHHHHHHHhccC-CCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceE
Q psy13224 79 HIYLRLDGTTKVDQRQVLMERFNMD-ARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVH 157 (160)
Q Consensus 79 ~~~~~~~g~~~~~~r~~~~~~f~~~-~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~ 157 (160)
+++-.++|+...+-|..+++.|+.+ +...|+|+||.+||.||||.-|++||+||.+|||..-.||..|+|||||++.|.
T Consensus 724 ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~Vn 803 (1373)
T KOG0384|consen 724 YPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVN 803 (1373)
T ss_pred CcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEE
Confidence 9999999999999999999999964 458899999999999999999999999999999999999999999999999999
Q ss_pred EeC
Q psy13224 158 IYR 160 (160)
Q Consensus 158 i~r 160 (160)
|||
T Consensus 804 VYR 806 (1373)
T KOG0384|consen 804 VYR 806 (1373)
T ss_pred EEE
Confidence 998
No 7
>KOG0390|consensus
Probab=99.94 E-value=3.3e-26 Score=188.92 Aligned_cols=124 Identities=40% Similarity=0.697 Sum_probs=113.9
Q ss_pred CchHHHHHHHHHHHhcC-CCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCc-eEEEEecc
Q psy13224 37 CGKLQSLDVILRKLKAG-GHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARI-FCFILSTR 114 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~-~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~-~vll~~~~ 114 (160)
++|+..|..++....+. ..++.+.++++.+++.++.+++-+|+.++.++|.++..+|+.+++.||+++.. .|+|+|+.
T Consensus 577 s~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsK 656 (776)
T KOG0390|consen 577 SGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSK 656 (776)
T ss_pred hhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecc
Confidence 67888888888655544 35788888899999999999999999999999999999999999999977665 99999999
Q ss_pred ccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEeC
Q psy13224 115 SGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 160 (160)
Q Consensus 115 ~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~r 160 (160)
++|+||||.+|+++|.|||+|||+...||++|+||.||+|+|+|||
T Consensus 657 Agg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYr 702 (776)
T KOG0390|consen 657 AGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYR 702 (776)
T ss_pred cccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEE
Confidence 9999999999999999999999999999999999999999999997
No 8
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.93 E-value=8.4e-26 Score=192.17 Aligned_cols=123 Identities=22% Similarity=0.224 Sum_probs=111.3
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHH-HhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecc
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFL-NFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTR 114 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l-~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~ 114 (160)
.++|...|.++++.. .++|+||||++..+++.+.+.| +..|++++.+||+++..+|.++++.|++.++...+|++|+
T Consensus 477 ~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTd 554 (956)
T PRK04914 477 FDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSE 554 (956)
T ss_pred cCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEech
Confidence 357999999999764 3679999999999999999999 5679999999999999999999999985443455778889
Q ss_pred ccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEeC
Q psy13224 115 SGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 160 (160)
Q Consensus 115 ~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~r 160 (160)
++++|+|++.+++||+||+||||..++||+||++|+||+++|.||.
T Consensus 555 vgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~ 600 (956)
T PRK04914 555 IGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHV 600 (956)
T ss_pred hhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999999999999999999999984
No 9
>KOG0392|consensus
Probab=99.92 E-value=7.1e-25 Score=184.83 Aligned_cols=144 Identities=44% Similarity=0.701 Sum_probs=122.4
Q ss_pred cchhhhhhhcCCCCccc---cccCchHHHHHHHHHHHh-c-------------CCCeEEEEeccHHHHHHHHHHHHhc--
Q psy13224 17 HPVTSAMCTQFPDPRLI---QYDCGKLQSLDVILRKLK-A-------------GGHRVLIFTQMTRMLDVLEAFLNFH-- 77 (160)
Q Consensus 17 ~~~~~~~~~~~~~~~~~---~~~~~K~~~l~~ll~~~~-~-------------~~~k~lif~~~~~~~~~l~~~l~~~-- 77 (160)
||-+.++.......... ...++|+.+|.+||.+=. + .++++||||++..+++.+++-|-+.
T Consensus 1286 hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~m 1365 (1549)
T KOG0392|consen 1286 HPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYM 1365 (1549)
T ss_pred cchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhc
Confidence 44444444443333222 245899999999997641 1 3469999999999999998887764
Q ss_pred -CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCce
Q psy13224 78 -GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 156 (160)
Q Consensus 78 -~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v 156 (160)
.+.|..++|+.++.+|.+++.+||+++...|+|++|.+||-|||+.+|++|||++.+|||-.-.|++.|+||+||++.|
T Consensus 1366 psVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392|consen 1366 PSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceee
Confidence 5567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeC
Q psy13224 157 HIYR 160 (160)
Q Consensus 157 ~i~r 160 (160)
.|||
T Consensus 1446 NVyR 1449 (1549)
T KOG0392|consen 1446 NVYR 1449 (1549)
T ss_pred eeee
Confidence 9998
No 10
>KOG0388|consensus
Probab=99.92 E-value=6.7e-25 Score=177.66 Aligned_cols=126 Identities=59% Similarity=1.003 Sum_probs=121.7
Q ss_pred cccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEec
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILST 113 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~ 113 (160)
.++|+|+..|.+||.+++++|+++|+|.+.+.+++.++++|..+++.+..++|+....+|..++.+|.. +...|+|++|
T Consensus 1024 itdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLST 1102 (1185)
T KOG0388|consen 1024 ITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLST 1102 (1185)
T ss_pred hccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC-CceEEEEEec
Confidence 456899999999999999999999999999999999999999999999999999999999999999985 7788999999
Q ss_pred cccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEeC
Q psy13224 114 RSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 160 (160)
Q Consensus 114 ~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~r 160 (160)
.++|.|+|+..+++|||||.+|||..-.|++.|+||.|||++|.|||
T Consensus 1103 RAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyr 1149 (1185)
T KOG0388|consen 1103 RAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYR 1149 (1185)
T ss_pred ccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeee
Confidence 99999999999999999999999999999999999999999999997
No 11
>KOG0386|consensus
Probab=99.90 E-value=1.1e-23 Score=175.19 Aligned_cols=150 Identities=51% Similarity=0.784 Sum_probs=134.2
Q ss_pred Ccchhccchhhhhh----hcCCCCccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEEC
Q psy13224 11 PKLRLLHPVTSAMC----TQFPDPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDG 86 (160)
Q Consensus 11 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g 86 (160)
..-.|+||++..-. ...-+...+...++|+..|..+|.++++.|++|+.|++.+..++.++++|.-.+++|..++|
T Consensus 679 LRKiCNHP~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG 758 (1157)
T KOG0386|consen 679 LRKLCNHPYLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDG 758 (1157)
T ss_pred HHHhcCCchhhhhhccccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecC
Confidence 34568999987433 22233344666799999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhccCC-CceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEeC
Q psy13224 87 TTKVDQRQVLMERFNMDA-RIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 160 (160)
Q Consensus 87 ~~~~~~r~~~~~~f~~~~-~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~r 160 (160)
.++..+|...+..|+.++ ...++|+++.+++.|+|+|-+++||.||+.|||-...||..|+||+||+++|.|+|
T Consensus 759 ~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 759 QTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred CcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 999999999999999754 47779999999999999999999999999999999999999999999999999986
No 12
>KOG0331|consensus
Probab=99.89 E-value=5e-23 Score=164.10 Aligned_cols=133 Identities=19% Similarity=0.264 Sum_probs=117.2
Q ss_pred hcCCCCccccccCchHHHHHHHHHHHh-cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccC
Q psy13224 25 TQFPDPRLIQYDCGKLQSLDVILRKLK-AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMD 103 (160)
Q Consensus 25 ~~~~~~~~~~~~~~K~~~l~~ll~~~~-~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~ 103 (160)
.+..+....+....|...|.++|.... +.+.|+||||++...++.|.+.|...++++..|||..++.+|...++.|+
T Consensus 311 ~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~Fr-- 388 (519)
T KOG0331|consen 311 HNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFR-- 388 (519)
T ss_pred cchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcc--
Confidence 334444445556789999999999887 33569999999999999999999999999999999999999999999995
Q ss_pred CCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 104 ARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 104 ~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
++..-+|++|+++++|||++++++||+||+|-+...|.||+||.+|.|++..+..|
T Consensus 389 eG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tf 444 (519)
T KOG0331|consen 389 EGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITF 444 (519)
T ss_pred cCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEE
Confidence 55566999999999999999999999999999999999999999999988876654
No 13
>KOG1002|consensus
Probab=99.88 E-value=1.4e-22 Score=159.13 Aligned_cols=125 Identities=36% Similarity=0.553 Sum_probs=118.4
Q ss_pred cCchHHHHHHHHHHHhcCCC--eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEec
Q psy13224 36 DCGKLQSLDVILRKLKAGGH--RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILST 113 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~--k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~ 113 (160)
.|.|.++|.+-|..+.+.+. |.|||++++.+++.+.=.|.+.|+.++-+.|+++++.|...++.|.++..+.|+|+|.
T Consensus 618 sSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSL 697 (791)
T KOG1002|consen 618 SSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSL 697 (791)
T ss_pred chhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEe
Confidence 57899999988877766554 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEeC
Q psy13224 114 RSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 160 (160)
Q Consensus 114 ~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~r 160 (160)
+++|..||+..+++|+.+||+|||+...|+..|+||+||.++|.|.|
T Consensus 698 kAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvr 744 (791)
T KOG1002|consen 698 KAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVR 744 (791)
T ss_pred ccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEE
Confidence 99999999999999999999999999999999999999999999865
No 14
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.88 E-value=4.6e-22 Score=133.76 Aligned_cols=120 Identities=28% Similarity=0.416 Sum_probs=109.8
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q psy13224 38 GKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGG 117 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~ 117 (160)
.|...+.+++....+.++++|||+++...++.+.+.|+..+..+..++|+.+..+|...++.|.+ +...+|+++.+++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~--~~~~ili~t~~~~ 89 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFRE--GEIVVLVATDVIA 89 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHc--CCCcEEEEcChhh
Confidence 69999999998766567899999999999999999999989999999999999999999999963 3355777899999
Q ss_pred cccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 118 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 118 ~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+|+|+++++++|+++++|++..+.|++||++|.|+++.|.+|
T Consensus 90 ~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 90 RGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999999988875
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.87 E-value=1.2e-21 Score=167.19 Aligned_cols=126 Identities=53% Similarity=0.885 Sum_probs=120.0
Q ss_pred ccC-chHHHHHHHH-HHHhcCCC--eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEE
Q psy13224 35 YDC-GKLQSLDVIL-RKLKAGGH--RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFI 110 (160)
Q Consensus 35 ~~~-~K~~~l~~ll-~~~~~~~~--k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll 110 (160)
..+ +|...+.+++ ..+..++. ++++|+++..+.+.+...++..++.++.++|+++.++|...++.|++++...+++
T Consensus 688 ~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~l 767 (866)
T COG0553 688 QLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFL 767 (866)
T ss_pred hccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEE
Confidence 345 8999999999 78888888 9999999999999999999999999999999999999999999999777789999
Q ss_pred EeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEeC
Q psy13224 111 LSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 160 (160)
Q Consensus 111 ~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~r 160 (160)
+++.+++.|+|+..+++||++||+|||....|++.|+||+||+++|.|||
T Consensus 768 ls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r 817 (866)
T COG0553 768 LSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYR 817 (866)
T ss_pred EEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEE
Confidence 99999999999999999999999999999999999999999999999997
No 16
>KOG1015|consensus
Probab=99.87 E-value=6.7e-22 Score=164.08 Aligned_cols=125 Identities=42% Similarity=0.684 Sum_probs=115.9
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHh----------------------cCCeEEEEECCCCHHHH
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNF----------------------HGHIYLRLDGTTKVDQR 93 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~----------------------~~~~~~~~~g~~~~~~r 93 (160)
.|+|+-.|.+||..-.+-|.|+|||+++...++.|..+|+. .|..|..|+|++...+|
T Consensus 1124 ~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R 1203 (1567)
T KOG1015|consen 1124 HSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSR 1203 (1567)
T ss_pred cCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHH
Confidence 58999999999988777799999999999999999999973 25678999999999999
Q ss_pred HHHHHHhccCCC--ceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEeC
Q psy13224 94 QVLMERFNMDAR--IFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 160 (160)
Q Consensus 94 ~~~~~~f~~~~~--~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~r 160 (160)
.++...||+..+ .+++|+||.+++.|+|+-.||+||+||-.|||..-.|++=|+||+||+|+|+|||
T Consensus 1204 ~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYR 1272 (1567)
T KOG1015|consen 1204 KKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYR 1272 (1567)
T ss_pred HHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehh
Confidence 999999996544 6779999999999999999999999999999999999999999999999999998
No 17
>KOG0333|consensus
Probab=99.87 E-value=1.1e-21 Score=154.74 Aligned_cols=128 Identities=20% Similarity=0.201 Sum_probs=113.9
Q ss_pred CCCCccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCc
Q psy13224 27 FPDPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARI 106 (160)
Q Consensus 27 ~~~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ 106 (160)
..+-......+.|..+|.++|+.. ..+.+|||.|+...+++|++.|++.|+++..+||+.++++|..++..|+++.
T Consensus 492 veQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t-- 567 (673)
T KOG0333|consen 492 VEQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGT-- 567 (673)
T ss_pred hheEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcC--
Confidence 444444555678999999999864 4579999999999999999999999999999999999999999999996444
Q ss_pred eEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEE
Q psy13224 107 FCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHI 158 (160)
Q Consensus 107 ~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i 158 (160)
.-+|++|+++++|+|+|++++||+||...+...|.|||||++|.|+...+.-
T Consensus 568 ~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiS 619 (673)
T KOG0333|consen 568 GDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAIS 619 (673)
T ss_pred CCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEE
Confidence 4499999999999999999999999999999999999999999999887643
No 18
>PTZ00110 helicase; Provisional
Probab=99.85 E-value=8.5e-21 Score=155.36 Aligned_cols=122 Identities=19% Similarity=0.308 Sum_probs=110.4
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccc
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~ 115 (160)
...|...|.+++..+...+.++||||++...++.+...|...++....+||+.++++|..+++.|++ +...+|++|++
T Consensus 359 ~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~--G~~~ILVaTdv 436 (545)
T PTZ00110 359 EHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKT--GKSPIMIATDV 436 (545)
T ss_pred chhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhc--CCCcEEEEcch
Confidence 4568899999998876667899999999999999999999999999999999999999999999963 33347889999
Q ss_pred cccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 116 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 116 ~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+++|+|++++++||+||+|+++..|.||+||++|.|.+..+..|
T Consensus 437 ~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~ 480 (545)
T PTZ00110 437 ASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTF 480 (545)
T ss_pred hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEE
Confidence 99999999999999999999999999999999999988776544
No 19
>KOG4439|consensus
Probab=99.85 E-value=9.9e-21 Score=153.32 Aligned_cols=125 Identities=34% Similarity=0.619 Sum_probs=117.6
Q ss_pred cCchHHHHHHHHHHH-hcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccC-CCceEEEEec
Q psy13224 36 DCGKLQSLDVILRKL-KAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMD-ARIFCFILST 113 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~-~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~-~~~~vll~~~ 113 (160)
-|.|+..+.++++.+ ....+|++|-++|..++..+...+...|+.|..++|....++|...++.|+.. ++.+|+|++.
T Consensus 727 ~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSL 806 (901)
T KOG4439|consen 727 PSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSL 806 (901)
T ss_pred chhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEE
Confidence 367999999999888 44567999999999999999999999999999999999999999999999964 5589999999
Q ss_pred cccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEeC
Q psy13224 114 RSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 160 (160)
Q Consensus 114 ~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~r 160 (160)
-++|-|||+.+++|+|.+|..|||..+.|+..|++|+||+|+|+|||
T Consensus 807 tAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR 853 (901)
T KOG4439|consen 807 TAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHR 853 (901)
T ss_pred ccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEE
Confidence 99999999999999999999999999999999999999999999997
No 20
>KOG0330|consensus
Probab=99.84 E-value=8.1e-21 Score=145.24 Aligned_cols=139 Identities=19% Similarity=0.248 Sum_probs=122.4
Q ss_pred hhccchhhhhhhcCCCCccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHH
Q psy13224 14 RLLHPVTSAMCTQFPDPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQR 93 (160)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r 93 (160)
.+..+..+...+...+.++....--|...|..||++.. |..+||||+++...+++.-+|...|+.+..+||.+++..|
T Consensus 262 ~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~--g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~R 339 (476)
T KOG0330|consen 262 KVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELA--GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKR 339 (476)
T ss_pred EEeccchhcchHHhhhheEeccccccchhHHHHHHhhc--CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHH
Confidence 34444556667777777777777789999999998754 5799999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCce
Q psy13224 94 QVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 156 (160)
Q Consensus 94 ~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v 156 (160)
...++.|. .+.+-+|++||++++|||+++++.||+||.|-+...|+||+||+.|.|+...+
T Consensus 340 lg~l~~Fk--~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ 400 (476)
T KOG0330|consen 340 LGALNKFK--AGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKA 400 (476)
T ss_pred HHHHHHHh--ccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcce
Confidence 99999995 45555999999999999999999999999999999999999999999976653
No 21
>KOG0345|consensus
Probab=99.83 E-value=2.4e-20 Score=145.51 Aligned_cols=152 Identities=16% Similarity=0.248 Sum_probs=127.1
Q ss_pred hhhhhhhcCCcchhccchhhhhhhcCCCCccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc--CC
Q psy13224 2 EAAMTAELRPKLRLLHPVTSAMCTQFPDPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH--GH 79 (160)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~--~~ 79 (160)
.+++++.++.+...-. -+++++....++..+....|+..+.++|.. ...+|.|||..++..++++...|... ..
T Consensus 207 raGLRNpv~V~V~~k~--~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~ 282 (567)
T KOG0345|consen 207 RAGLRNPVRVSVKEKS--KSATPSSLALEYLVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKR 282 (567)
T ss_pred HhhccCceeeeecccc--cccCchhhcceeeEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCC
Confidence 3455665555443222 223667778888888888899999999975 45679999999999999999998875 77
Q ss_pred eEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 80 IYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 80 ~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+...+||.++..+|.+.+..|.. ...-+|++||++++|||++++++||.||||.+|..+.||.||+.|.|+.....||
T Consensus 283 ~i~~iHGK~~q~~R~k~~~~F~~--~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivf 360 (567)
T KOG0345|consen 283 EIFSIHGKMSQKARAKVLEAFRK--LSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVF 360 (567)
T ss_pred cEEEecchhcchhHHHHHHHHHh--ccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEE
Confidence 89999999999999999999974 3444888999999999999999999999999999999999999999998887665
No 22
>KOG0328|consensus
Probab=99.83 E-value=2.7e-20 Score=137.56 Aligned_cols=114 Identities=19% Similarity=0.255 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccccc
Q psy13224 39 KLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGV 118 (160)
Q Consensus 39 K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~ 118 (160)
|.+.|.+|-+.+- -.+.+|||++...++||.+.++..++.+..+||.++++||++++++|+ .+..-+|+++++-++
T Consensus 253 KfdtLcdLYd~Lt--ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFR--sg~SrvLitTDVwaR 328 (400)
T KOG0328|consen 253 KFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFR--SGKSRVLITTDVWAR 328 (400)
T ss_pred hHhHHHHHhhhhe--hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhh--cCCceEEEEechhhc
Confidence 8888888777653 348999999999999999999999999999999999999999999996 344447789999999
Q ss_pred ccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCce
Q psy13224 119 GINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 156 (160)
Q Consensus 119 Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v 156 (160)
|+|+|.++.||+||.|-|...|+||+||.+|+|++.-+
T Consensus 329 GiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGva 366 (400)
T KOG0328|consen 329 GIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVA 366 (400)
T ss_pred cCCcceeEEEEecCCCccHHHHhhhhccccccCCcceE
Confidence 99999999999999999999999999999999987653
No 23
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.83 E-value=4.8e-20 Score=147.00 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=105.3
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
..|...|..++.. ....++||||++...++.+.+.|...|+++..+||++++++|..+++.|+ .+...+|++|+++
T Consensus 240 ~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~--~g~~~vLVaTdv~ 315 (423)
T PRK04837 240 EEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFT--RGDLDILVATDVA 315 (423)
T ss_pred HHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHH--cCCCcEEEEechh
Confidence 4577777777764 34579999999999999999999999999999999999999999999996 3344488899999
Q ss_pred ccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 117 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 117 ~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
++|+|++++++||+||+|+++..|.||+||++|.|+...+..|
T Consensus 316 ~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~ 358 (423)
T PRK04837 316 ARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISL 358 (423)
T ss_pred hcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEE
Confidence 9999999999999999999999999999999999988776543
No 24
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=3.6e-20 Score=150.59 Aligned_cols=116 Identities=22% Similarity=0.340 Sum_probs=104.3
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q psy13224 38 GKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGG 117 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~ 117 (160)
.|+..|..+++.. ...++||||++...++.+...|...|+++..+||++++++|.+.++.|+ .+..-+|++||+++
T Consensus 259 ~k~~~L~~ll~~~--~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~--~g~~~vLVaTDvaa 334 (513)
T COG0513 259 EKLELLLKLLKDE--DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFK--DGELRVLVATDVAA 334 (513)
T ss_pred HHHHHHHHHHhcC--CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHH--cCCCCEEEEechhh
Confidence 3889888888753 3448999999999999999999999999999999999999999999997 33344888999999
Q ss_pred cccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceE
Q psy13224 118 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVH 157 (160)
Q Consensus 118 ~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~ 157 (160)
+|||++++++||+||+|.++..|.||+||++|.|.+....
T Consensus 335 RGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai 374 (513)
T COG0513 335 RGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAI 374 (513)
T ss_pred ccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEE
Confidence 9999999999999999999999999999999999876644
No 25
>KOG0342|consensus
Probab=99.82 E-value=4.8e-20 Score=144.33 Aligned_cols=135 Identities=16% Similarity=0.232 Sum_probs=117.5
Q ss_pred hhhhhhcCCCCccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHH
Q psy13224 20 TSAMCTQFPDPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMER 99 (160)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~ 99 (160)
......-.++.+++.....++..+..+|++.... .|+|||+.++.......+.|+...+++..|||+.++..|.....+
T Consensus 297 ~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~ 375 (543)
T KOG0342|consen 297 ERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFE 375 (543)
T ss_pred CcchhhcccceEEeccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHH
Confidence 3444455677777777777888888999876543 799999999999999999999999999999999999999999999
Q ss_pred hccCCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceE
Q psy13224 100 FNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVH 157 (160)
Q Consensus 100 f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~ 157 (160)
|.... ..||++|+++++|+|+|++++||.|+||.+|..|+||+||.+|-|-+....
T Consensus 376 F~kae--sgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~al 431 (543)
T KOG0342|consen 376 FCKAE--SGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKAL 431 (543)
T ss_pred Hhhcc--cceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEE
Confidence 96444 449999999999999999999999999999999999999999988766543
No 26
>KOG1000|consensus
Probab=99.81 E-value=2.4e-19 Score=140.94 Aligned_cols=123 Identities=32% Similarity=0.504 Sum_probs=114.6
Q ss_pred CchHHHHHHHHHH---H-hcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe
Q psy13224 37 CGKLQSLDVILRK---L-KAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS 112 (160)
Q Consensus 37 ~~K~~~l~~ll~~---~-~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~ 112 (160)
-.|...+.+.|.. + -+.+.|++||+++..+++.|+..+.++++....|+|++++.+|..+++.|..++...|-+++
T Consensus 471 iaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvls 550 (689)
T KOG1000|consen 471 IAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLS 550 (689)
T ss_pred ccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEE
Confidence 4688888888876 2 23456999999999999999999999999999999999999999999999988999999999
Q ss_pred ccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 113 TRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 113 ~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
..+++.||++..++.|+|.+.+|||+.+.|+..|+||+||+..|.||
T Consensus 551 ItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ 597 (689)
T KOG1000|consen 551 ITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQ 597 (689)
T ss_pred EeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEE
Confidence 99999999999999999999999999999999999999999999886
No 27
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.80 E-value=5.2e-19 Score=141.42 Aligned_cols=117 Identities=17% Similarity=0.234 Sum_probs=102.9
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q psy13224 38 GKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGG 117 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~ 117 (160)
.|...|..+++. ....++||||++.+.++.+.+.|...++.+..+||++++.+|...++.|+ .+...+|++|++++
T Consensus 231 ~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~--~G~~~vLVaTd~~~ 306 (434)
T PRK11192 231 HKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLT--DGRVNVLVATDVAA 306 (434)
T ss_pred HHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHh--CCCCcEEEEccccc
Confidence 466666666642 24579999999999999999999999999999999999999999999996 34445888999999
Q ss_pred cccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEE
Q psy13224 118 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHI 158 (160)
Q Consensus 118 ~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i 158 (160)
+|+|++++++||+||+|+++..|.||+||++|.|....+..
T Consensus 307 ~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 307 RGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred cCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 99999999999999999999999999999999998776554
No 28
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.80 E-value=5.8e-19 Score=145.24 Aligned_cols=118 Identities=21% Similarity=0.326 Sum_probs=104.6
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
..|...+..++.. ..+.++||||++...++.+.+.|...++.+..+||++++.+|..+++.|+ .+...+|++|+++
T Consensus 242 ~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr--~G~~~VLVaTdv~ 317 (572)
T PRK04537 242 EEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQ--KGQLEILVATDVA 317 (572)
T ss_pred HHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHH--cCCCeEEEEehhh
Confidence 4566777666653 34679999999999999999999999999999999999999999999996 3445588899999
Q ss_pred ccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEE
Q psy13224 117 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHI 158 (160)
Q Consensus 117 ~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i 158 (160)
++|+|++++++||+||.|+++..|.|++||++|.|.+..+..
T Consensus 318 arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~ 359 (572)
T PRK04537 318 ARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAIS 359 (572)
T ss_pred hcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEE
Confidence 999999999999999999999999999999999998877654
No 29
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.80 E-value=5.5e-19 Score=144.07 Aligned_cols=121 Identities=20% Similarity=0.252 Sum_probs=105.4
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHh-cCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccc
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNF-HGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~-~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~ 115 (160)
..|...+.+++........++|||+++...++.+.+.|.. .++.+..+||+++.++|..+++.|.+ +..-+|++|++
T Consensus 350 ~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~--G~~~ILVaTdv 427 (518)
T PLN00206 350 KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV--GEVPVIVATGV 427 (518)
T ss_pred hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC--CCCCEEEEecH
Confidence 4577788888876544456899999999999999999975 69999999999999999999999963 33348889999
Q ss_pred cccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 116 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 116 ~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+++|+|++++++||+||+|.+...|.||+||++|.|.+..+.+|
T Consensus 428 l~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f 471 (518)
T PLN00206 428 LGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVF 471 (518)
T ss_pred hhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEE
Confidence 99999999999999999999999999999999999987776554
No 30
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.80 E-value=8.7e-19 Score=141.12 Aligned_cols=118 Identities=19% Similarity=0.304 Sum_probs=105.0
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
..|...+..++.. ..+.++||||++...++.+.+.|...++.+..+||++++.+|..+++.|++ +...+|++|+++
T Consensus 227 ~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~--g~~~vLVaTdv~ 302 (460)
T PRK11776 227 DERLPALQRLLLH--HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFAN--RSCSVLVATDVA 302 (460)
T ss_pred HHHHHHHHHHHHh--cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHc--CCCcEEEEeccc
Confidence 4588888888864 335689999999999999999999999999999999999999999999963 334478889999
Q ss_pred ccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEE
Q psy13224 117 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHI 158 (160)
Q Consensus 117 ~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i 158 (160)
++|+|++++++||++++|.++..|.||+||++|.|++..+..
T Consensus 303 ~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~ 344 (460)
T PRK11776 303 ARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALS 344 (460)
T ss_pred ccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEE
Confidence 999999999999999999999999999999999998776554
No 31
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.79 E-value=1.2e-18 Score=140.88 Aligned_cols=120 Identities=19% Similarity=0.249 Sum_probs=105.3
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccc
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~ 115 (160)
.+.|...+..++.. ....++||||+....++.+.+.|...++.+..++|.++.++|.+.++.|+ .+..-+|++|++
T Consensus 319 ~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr--~G~~~vLvaT~~ 394 (475)
T PRK01297 319 GSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFR--EGKIRVLVATDV 394 (475)
T ss_pred chhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHh--CCCCcEEEEccc
Confidence 45677777777753 33569999999999999999999999999999999999999999999996 333447888999
Q ss_pred cccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 116 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 116 ~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+++|+|++++++||++++|++...|.|++||++|.|+...+..|
T Consensus 395 l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~ 438 (475)
T PRK01297 395 AGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISF 438 (475)
T ss_pred cccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEE
Confidence 99999999999999999999999999999999999987765543
No 32
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.79 E-value=1.4e-18 Score=139.75 Aligned_cols=117 Identities=20% Similarity=0.216 Sum_probs=100.8
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q psy13224 38 GKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGG 117 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~ 117 (160)
.|...+..++.. ....++||||++...++.+.+.|...++.+..+||++++.+|..+++.|.+ +...+|++|++++
T Consensus 231 ~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~--g~~~iLVaTdv~~ 306 (456)
T PRK10590 231 RKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS--GDIRVLVATDIAA 306 (456)
T ss_pred HHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHc--CCCcEEEEccHHh
Confidence 344555554432 234699999999999999999999999999999999999999999999963 3344888999999
Q ss_pred cccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEE
Q psy13224 118 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHI 158 (160)
Q Consensus 118 ~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i 158 (160)
+|+|++++++||+|++|.++..|.|++||++|.|.+..+..
T Consensus 307 rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~ 347 (456)
T PRK10590 307 RGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALS 347 (456)
T ss_pred cCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEE
Confidence 99999999999999999999999999999999998877653
No 33
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.79 E-value=1.4e-18 Score=140.35 Aligned_cols=117 Identities=20% Similarity=0.250 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccc
Q psy13224 40 LQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVG 119 (160)
Q Consensus 40 ~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~G 119 (160)
...+.+++.. ...+++.||||++...++.+.+.|...|+.+..+||++++++|..+.+.|. .+...+|++|+++++|
T Consensus 213 ~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~--~g~~~vLVaT~~~~~G 289 (470)
T TIGR00614 213 LEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQ--RDEIQVVVATVAFGMG 289 (470)
T ss_pred HHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHH--cCCCcEEEEechhhcc
Confidence 3344444432 134567899999999999999999999999999999999999999999996 3333478889999999
Q ss_pred cccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 120 INLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 120 ldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+|+++++.||++++|.++..|.|++||++|.|+...+.+|
T Consensus 290 ID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 290 INKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred CCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 9999999999999999999999999999999988876654
No 34
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.78 E-value=3.1e-19 Score=110.32 Aligned_cols=78 Identities=32% Similarity=0.537 Sum_probs=71.7
Q ss_pred HHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcC
Q psy13224 72 AFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIG 151 (160)
Q Consensus 72 ~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 151 (160)
..|+..++++..+||+++..+|...++.|+.... .+|++|+++++|+|++.+++||+++++||+..+.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~--~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEI--RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS--SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCc--eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 3678899999999999999999999999974443 47788899999999999999999999999999999999999987
No 35
>PRK13766 Hef nuclease; Provisional
Probab=99.78 E-value=3.8e-18 Score=144.99 Aligned_cols=117 Identities=21% Similarity=0.363 Sum_probs=104.1
Q ss_pred cCchHHHHHHHHHHHh--cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECC--------CCHHHHHHHHHHhccCCC
Q psy13224 36 DCGKLQSLDVILRKLK--AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGT--------TKVDQRQVLMERFNMDAR 105 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~--~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~--------~~~~~r~~~~~~f~~~~~ 105 (160)
.++|...|.++|.+.. ..+.++||||++.++++.|.+.|...++.+..++|. +++.+|...+.+|++ +
T Consensus 345 ~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~-g- 422 (773)
T PRK13766 345 EHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRA-G- 422 (773)
T ss_pred CChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHc-C-
Confidence 4689999999998876 456799999999999999999999999999999986 788899999999974 3
Q ss_pred ceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCC
Q psy13224 106 IFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTR 154 (160)
Q Consensus 106 ~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~ 154 (160)
...+|++|+++++|+|++.+++||+|||+|++..++||.||++|.|+.+
T Consensus 423 ~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~~~ 471 (773)
T PRK13766 423 EFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEEGR 471 (773)
T ss_pred CCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCCCE
Confidence 3447788899999999999999999999999999999999999987643
No 36
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.77 E-value=2.7e-18 Score=142.41 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=105.7
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
..|...|..++.. ....++||||++...++.+.+.|...++.+..+||.+++++|...++.|. .+...+|++|+++
T Consensus 230 ~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr--~G~~~ILVATdv~ 305 (629)
T PRK11634 230 MRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK--DGRLDILIATDVA 305 (629)
T ss_pred hhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHh--CCCCCEEEEcchH
Confidence 4577888888763 33469999999999999999999999999999999999999999999996 3444588999999
Q ss_pred ccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 117 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 117 ~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
++|+|++++++||+||+|.++..|.|++||++|.|....+.+|
T Consensus 306 arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~ 348 (629)
T PRK11634 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLF 348 (629)
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEE
Confidence 9999999999999999999999999999999999987776544
No 37
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.77 E-value=7.2e-18 Score=137.05 Aligned_cols=123 Identities=12% Similarity=0.137 Sum_probs=107.3
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccc
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~ 115 (160)
...|...+.+++..+...+.+++||+...++++.|.+.|+..+.++..+||+++.++|....+.|+ .+...+++++++.
T Consensus 326 ~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~-~~~~~vLvaT~~~ 404 (501)
T PHA02558 326 HTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAE-GGKGIIIVASYGV 404 (501)
T ss_pred cHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHh-CCCCeEEEEEcce
Confidence 345677777787777667789999999999999999999999999999999999999999999996 4455566666799
Q ss_pred cccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCc-eEEe
Q psy13224 116 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRD-VHIY 159 (160)
Q Consensus 116 ~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~-v~i~ 159 (160)
+++|+|++++++||+++|+.+...+.|++||++|.+..|+ +.||
T Consensus 405 l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 405 FSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred eccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 9999999999999999999999999999999999987664 6776
No 38
>KOG0340|consensus
Probab=99.77 E-value=3.5e-18 Score=129.65 Aligned_cols=130 Identities=18% Similarity=0.190 Sum_probs=115.8
Q ss_pred hhcCCCCccccccCchHHHHHHHHHHHhc-CCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhcc
Q psy13224 24 CTQFPDPRLIQYDCGKLQSLDVILRKLKA-GGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNM 102 (160)
Q Consensus 24 ~~~~~~~~~~~~~~~K~~~l~~ll~~~~~-~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~ 102 (160)
+..+.+.++......|...|..+|....+ +...++||++.+..+..|...|+..++....+|+-+++.+|...+.+|+
T Consensus 223 vetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFr- 301 (442)
T KOG0340|consen 223 VETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFR- 301 (442)
T ss_pred hhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHh-
Confidence 34455666677778899999999988765 3569999999999999999999999999999999999999999999996
Q ss_pred CCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCc
Q psy13224 103 DARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRD 155 (160)
Q Consensus 103 ~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~ 155 (160)
.+..-+|++|+++++|||+|.+.-||++|.|.+|..|+||+||..|.|+...
T Consensus 302 -s~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 302 -SNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred -hcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcc
Confidence 4444488899999999999999999999999999999999999999998765
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.77 E-value=6.3e-18 Score=140.13 Aligned_cols=116 Identities=21% Similarity=0.206 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccccc
Q psy13224 39 KLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGV 118 (160)
Q Consensus 39 K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~ 118 (160)
+...+..++.. ..++++||||++...++.+...|...|+.+..+||++++++|..+++.|.. +...+|++|+++++
T Consensus 223 ~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~--g~~~VLVaT~a~~~ 298 (607)
T PRK11057 223 PLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQR--DDLQIVVATVAFGM 298 (607)
T ss_pred hHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHC--CCCCEEEEechhhc
Confidence 34444444432 346799999999999999999999999999999999999999999999963 33448889999999
Q ss_pred ccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEE
Q psy13224 119 GINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHI 158 (160)
Q Consensus 119 Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i 158 (160)
|+|+++++.||++++|.+...|.|++||++|.|....+.+
T Consensus 299 GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~il 338 (607)
T PRK11057 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (607)
T ss_pred cCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEE
Confidence 9999999999999999999999999999999998776544
No 40
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.76 E-value=1.3e-17 Score=131.45 Aligned_cols=121 Identities=22% Similarity=0.371 Sum_probs=105.0
Q ss_pred ccCchHHHHHHHHHHHh--cCCCeEEEEeccHHHHHHHHHHHHhcCCeEE-EEEC--------CCCHHHHHHHHHHhccC
Q psy13224 35 YDCGKLQSLDVILRKLK--AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYL-RLDG--------TTKVDQRQVLMERFNMD 103 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~--~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~-~~~g--------~~~~~~r~~~~~~f~~~ 103 (160)
...||+..+.+++++.. ..+.++|||+++.++++.+.+.|...+.+.. .+-| ++++.+..+.+++|+
T Consensus 345 v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr-- 422 (542)
T COG1111 345 VEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFR-- 422 (542)
T ss_pred CCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHh--
Confidence 35789999999999887 4467999999999999999999999988874 5555 689999999999995
Q ss_pred CCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEE
Q psy13224 104 ARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHI 158 (160)
Q Consensus 104 ~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i 158 (160)
.+...+|++|.++.+|||++.++.||||+|.-++-..+||.||++|. +...|+|
T Consensus 423 ~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~v 476 (542)
T COG1111 423 KGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVV 476 (542)
T ss_pred cCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEE
Confidence 45555888999999999999999999999999999999999999997 4444443
No 41
>KOG0341|consensus
Probab=99.75 E-value=4.2e-18 Score=130.87 Aligned_cols=114 Identities=19% Similarity=0.259 Sum_probs=102.3
Q ss_pred HHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccc
Q psy13224 42 SLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGIN 121 (160)
Q Consensus 42 ~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gld 121 (160)
++.-+|+.+.....+||||+.....++.+.++|--.|...+.|||+..+++|...+..|+. +.+-+|++|++++.|||
T Consensus 409 KiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~--gkKDVLVATDVASKGLD 486 (610)
T KOG0341|consen 409 KIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRA--GKKDVLVATDVASKGLD 486 (610)
T ss_pred hhhhHHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhc--CCCceEEEecchhccCC
Confidence 3444666667778899999999999999999999999999999999999999999999964 44448999999999999
Q ss_pred cccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceE
Q psy13224 122 LTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVH 157 (160)
Q Consensus 122 l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~ 157 (160)
+|++.|||+||.|-....|.+|+||.+|.|.+.-.+
T Consensus 487 Fp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiAT 522 (610)
T KOG0341|consen 487 FPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIAT 522 (610)
T ss_pred CccchhhccCCChHHHHHHHHHhcccCCCCCcceee
Confidence 999999999999999999999999999999876544
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.74 E-value=2.7e-17 Score=136.17 Aligned_cols=119 Identities=21% Similarity=0.192 Sum_probs=103.7
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
..+...+.+++... .+++.||||++...++.+.+.|...|+++..+||+++.++|..+.+.|.. +...+|++|+++
T Consensus 209 ~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~--g~~~vlVaT~a~ 284 (591)
T TIGR01389 209 NNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLY--DDVKVMVATNAF 284 (591)
T ss_pred CCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHc--CCCcEEEEechh
Confidence 34666666666542 36799999999999999999999999999999999999999999999963 334588899999
Q ss_pred ccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 117 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 117 ~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
++|+|+++++.||++++|++...|.|++||++|.|+...+.++
T Consensus 285 ~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~ 327 (591)
T TIGR01389 285 GMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILL 327 (591)
T ss_pred hccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEe
Confidence 9999999999999999999999999999999999987765543
No 43
>PTZ00424 helicase 45; Provisional
Probab=99.74 E-value=2.2e-17 Score=130.65 Aligned_cols=117 Identities=17% Similarity=0.231 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccccc
Q psy13224 39 KLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGV 118 (160)
Q Consensus 39 K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~ 118 (160)
|...+..+++. ....++||||++...++.+.+.|...++.+..+||+++.++|...++.|++ +...+|++|+++++
T Consensus 254 ~~~~l~~~~~~--~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~--g~~~vLvaT~~l~~ 329 (401)
T PTZ00424 254 KFDTLCDLYET--LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRS--GSTRVLITTDLLAR 329 (401)
T ss_pred HHHHHHHHHHh--cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHc--CCCCEEEEcccccC
Confidence 45555555543 234689999999999999999999999999999999999999999999963 33448889999999
Q ss_pred ccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 119 GINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 119 Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
|+|+++++.||++++|.+...+.|++||++|.|....+..+
T Consensus 330 GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l 370 (401)
T PTZ00424 330 GIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINF 370 (401)
T ss_pred CcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEE
Confidence 99999999999999999999999999999999987776553
No 44
>KOG0343|consensus
Probab=99.74 E-value=1.7e-17 Score=132.00 Aligned_cols=146 Identities=15% Similarity=0.177 Sum_probs=126.9
Q ss_pred CCcchhcc-chhhhhhhcCCCCccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc--CCeEEEEEC
Q psy13224 10 RPKLRLLH-PVTSAMCTQFPDPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDG 86 (160)
Q Consensus 10 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g 86 (160)
-|.....| ......+.++.++++...-..|++.|-.+++... ..|.|||.+++..+..+.+.+.+. |++...+||
T Consensus 270 dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G 347 (758)
T KOG0343|consen 270 DPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHG 347 (758)
T ss_pred CCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeecc
Confidence 34455556 2335667888888888888889999999998644 459999999999999999999875 999999999
Q ss_pred CCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 87 TTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 87 ~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
.+++..|.....+|. ....++|++|+++++|||++.+++||.+|.|-+...|+||+||..|++...+..+|
T Consensus 348 ~~~Q~~R~ev~~~F~--~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~ 418 (758)
T KOG0343|consen 348 TMSQKKRIEVYKKFV--RKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLM 418 (758)
T ss_pred chhHHHHHHHHHHHH--HhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEE
Confidence 999999999999995 45567999999999999999999999999999999999999999999988887765
No 45
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.73 E-value=2.6e-17 Score=141.03 Aligned_cols=104 Identities=19% Similarity=0.161 Sum_probs=95.6
Q ss_pred CCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCC
Q psy13224 54 GHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDS 133 (160)
Q Consensus 54 ~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~ 133 (160)
+++.||||.+...++.+.+.|...|+++..+||++++++|..+.+.|.. +...+|++|+++++|+|+++++.||+|++
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~--Gei~VLVATdAFGMGIDkPDVR~VIHydl 757 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSK--DEINIICATVAFGMGINKPDVRFVIHHSL 757 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhc--CCCcEEEEechhhcCCCccCCcEEEEcCC
Confidence 5689999999999999999999999999999999999999999999963 33447888999999999999999999999
Q ss_pred CCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 134 DWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 134 ~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
|.+...|.|++||++|.|+...|..|
T Consensus 758 PkSiEsYyQriGRAGRDG~~g~cILl 783 (1195)
T PLN03137 758 PKSIEGYHQECGRAGRDGQRSSCVLY 783 (1195)
T ss_pred CCCHHHHHhhhcccCCCCCCceEEEE
Confidence 99999999999999999998776554
No 46
>KOG0335|consensus
Probab=99.73 E-value=1.5e-17 Score=131.30 Aligned_cols=125 Identities=19% Similarity=0.253 Sum_probs=108.3
Q ss_pred ccccCchHHHHHHHHHHHhcC--C-----CeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCC
Q psy13224 33 IQYDCGKLQSLDVILRKLKAG--G-----HRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDAR 105 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~--~-----~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 105 (160)
......|..+|.++|...... . ++++||+++...++.+...|...++++..+||..++.+|.+.++.|++..
T Consensus 309 ~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~- 387 (482)
T KOG0335|consen 309 FVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGK- 387 (482)
T ss_pred eecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCC-
Confidence 444567888888888754421 2 38999999999999999999999999999999999999999999997333
Q ss_pred ceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 106 IFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 106 ~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
.-+|++|+++++|||+++++|||+||.|.+...|.||+||++|.|...-+..|
T Consensus 388 -~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf 440 (482)
T KOG0335|consen 388 -APVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSF 440 (482)
T ss_pred -cceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEE
Confidence 23888999999999999999999999999999999999999999987765543
No 47
>KOG0348|consensus
Probab=99.72 E-value=8.8e-17 Score=127.52 Aligned_cols=131 Identities=15% Similarity=0.266 Sum_probs=100.9
Q ss_pred CCCCccccccCchHHHHHHHHHHHhc--CCCeEEEEeccHHHHHHHHHHHHhc----------------------CCeEE
Q psy13224 27 FPDPRLIQYDCGKLQSLDVILRKLKA--GGHRVLIFTQMTRMLDVLEAFLNFH----------------------GHIYL 82 (160)
Q Consensus 27 ~~~~~~~~~~~~K~~~l~~ll~~~~~--~~~k~lif~~~~~~~~~l~~~l~~~----------------------~~~~~ 82 (160)
+.+.+.+...--++..|..+|...-+ ...|+|||.+..+.++.=.++|... +.++.
T Consensus 396 L~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~ 475 (708)
T KOG0348|consen 396 LLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFY 475 (708)
T ss_pred hhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEE
Confidence 33333333333345556666654432 3448899999999877665555421 44578
Q ss_pred EEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 83 RLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 83 ~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
.+||++++++|...++.|. .....+|++||++++|||+|++..||.||||.++..|.+|+||..|+|.......|
T Consensus 476 rLHGsm~QeeRts~f~~Fs--~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLf 550 (708)
T KOG0348|consen 476 RLHGSMEQEERTSVFQEFS--HSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLF 550 (708)
T ss_pred EecCchhHHHHHHHHHhhc--cccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEE
Confidence 9999999999999999995 44455999999999999999999999999999999999999999999988776554
No 48
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.71 E-value=3.4e-17 Score=101.31 Aligned_cols=81 Identities=30% Similarity=0.500 Sum_probs=73.7
Q ss_pred HHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHH
Q psy13224 69 VLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCH 148 (160)
Q Consensus 69 ~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~ 148 (160)
.+.+.|...++.+..+||++++++|...++.|+.. ...+|++++++++|+|++.+++||+++++|++..+.|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNG--KIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcC--CCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 46677888899999999999999999999999743 3468889999999999999999999999999999999999999
Q ss_pred hcC
Q psy13224 149 RIG 151 (160)
Q Consensus 149 R~g 151 (160)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 987
No 49
>KOG0336|consensus
Probab=99.71 E-value=2.3e-17 Score=127.54 Aligned_cols=130 Identities=19% Similarity=0.279 Sum_probs=114.3
Q ss_pred hhcCCCCccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccC
Q psy13224 24 CTQFPDPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMD 103 (160)
Q Consensus 24 ~~~~~~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~ 103 (160)
+.+..+..+...++.|+..+..++.. .....|+|||+.....++-|..-|-..|+..-.+||.-.+.+|++.+..|.
T Consensus 436 ~~sVkQ~i~v~~d~~k~~~~~~f~~~-ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~k-- 512 (629)
T KOG0336|consen 436 VKSVKQNIIVTTDSEKLEIVQFFVAN-MSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFK-- 512 (629)
T ss_pred eeeeeeeEEecccHHHHHHHHHHHHh-cCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhh--
Confidence 45556666677778899877777765 456679999999999999999999999999999999999999999999994
Q ss_pred CCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCce
Q psy13224 104 ARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 156 (160)
Q Consensus 104 ~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v 156 (160)
.+..-+|++|+.+++|||+++++||++||.|.|...|.+|+||++|-|++...
T Consensus 513 sG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~s 565 (629)
T KOG0336|consen 513 SGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTS 565 (629)
T ss_pred cCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcce
Confidence 55555888999999999999999999999999999999999999999988763
No 50
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=1.3e-16 Score=132.93 Aligned_cols=114 Identities=18% Similarity=0.322 Sum_probs=96.1
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccc
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~ 115 (160)
+..|+..+..+++.....++++||||+....++.+...|. ...++|++++.+|.++++.|+..+... +|+.+++
T Consensus 478 np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~-vLv~SkV 551 (732)
T TIGR00603 478 NPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVN-TIFLSKV 551 (732)
T ss_pred ChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCcc-EEEEecc
Confidence 4578888888887655568899999999998888888773 345899999999999999997444444 4555699
Q ss_pred cccccccccCCEEEEeCCCC-CcChhhHHHHHHHhcCCCCc
Q psy13224 116 GGVGINLTGADTVVFYDSDW-NPTMDAQAQDRCHRIGQTRD 155 (160)
Q Consensus 116 ~~~Gldl~~~~~vi~~~~~~-~~~~~~Q~~gR~~R~gq~~~ 155 (160)
+++|+|+|.++.+|++++++ ++..+.||.||+.|.+..+.
T Consensus 552 gdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~ 592 (732)
T TIGR00603 552 GDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSD 592 (732)
T ss_pred cccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCc
Confidence 99999999999999999876 89999999999999987654
No 51
>KOG0332|consensus
Probab=99.71 E-value=8.9e-17 Score=122.78 Aligned_cols=116 Identities=22% Similarity=0.208 Sum_probs=99.9
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
..|..+|.+|-.- . .-.+.||||++...+.|+...|...|..+..+||.+..++|..+++.|+ .+..-+|+.|++.
T Consensus 315 ~~K~~~l~~lyg~-~-tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr--~g~~kVLitTnV~ 390 (477)
T KOG0332|consen 315 DDKYQALVNLYGL-L-TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFR--EGKEKVLITTNVC 390 (477)
T ss_pred hhHHHHHHHHHhh-h-hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHh--cCcceEEEEechh
Confidence 3588887775532 2 2348899999999999999999999999999999999999999999995 4444588899999
Q ss_pred ccccccccCCEEEEeCCCCC------cChhhHHHHHHHhcCCCCce
Q psy13224 117 GVGINLTGADTVVFYDSDWN------PTMDAQAQDRCHRIGQTRDV 156 (160)
Q Consensus 117 ~~Gldl~~~~~vi~~~~~~~------~~~~~Q~~gR~~R~gq~~~v 156 (160)
+||+|.+.++.||+||.|-. +..|.||+||++|+|.+.-+
T Consensus 391 ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a 436 (477)
T KOG0332|consen 391 ARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLA 436 (477)
T ss_pred hcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceE
Confidence 99999999999999998764 67889999999999987643
No 52
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=2.8e-16 Score=129.52 Aligned_cols=121 Identities=20% Similarity=0.260 Sum_probs=100.2
Q ss_pred cccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEec
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILST 113 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~ 113 (160)
.+...|..+|.+++......+.++||||++.+.++.+...|...|+++..+||..+.. +..+..|....+ -++++|
T Consensus 453 ~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~r--E~~ii~~ag~~g--~VlVAT 528 (656)
T PRK12898 453 LTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDAE--EAAIVARAGQRG--RITVAT 528 (656)
T ss_pred eCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHH--HHHHHHHcCCCC--cEEEEc
Confidence 3445689999998887666678999999999999999999999999999999986644 444555542333 388899
Q ss_pred cccccccccc---cCC-----EEEEeCCCCCcChhhHHHHHHHhcCCCCceEE
Q psy13224 114 RSGGVGINLT---GAD-----TVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHI 158 (160)
Q Consensus 114 ~~~~~Gldl~---~~~-----~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i 158 (160)
+++++|+|++ ++. +||+++.|-+...+.|++||++|.|....+..
T Consensus 529 dmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~ 581 (656)
T PRK12898 529 NMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEA 581 (656)
T ss_pred cchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEE
Confidence 9999999998 554 99999999999999999999999998766543
No 53
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=4.9e-16 Score=130.48 Aligned_cols=120 Identities=18% Similarity=0.176 Sum_probs=104.0
Q ss_pred ccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecc
Q psy13224 35 YDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTR 114 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~ 114 (160)
+...|..++.+.+......+.++||||++.+.++.+...|...|+++..+||.+...++......+. .+ -++++|+
T Consensus 409 ~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~--~g--~VlIATd 484 (790)
T PRK09200 409 TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQ--KG--AVTVATN 484 (790)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCC--CC--eEEEEcc
Confidence 3456888888888776567889999999999999999999999999999999998888776666653 33 3888999
Q ss_pred cccccccc---ccCC-----EEEEeCCCCCcChhhHHHHHHHhcCCCCceEE
Q psy13224 115 SGGVGINL---TGAD-----TVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHI 158 (160)
Q Consensus 115 ~~~~Gldl---~~~~-----~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i 158 (160)
++|||+|+ +.+. +||+++.|-++..+.|+.||++|.|....+..
T Consensus 485 mAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~ 536 (790)
T PRK09200 485 MAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF 536 (790)
T ss_pred chhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE
Confidence 99999999 5887 99999999999999999999999998876543
No 54
>KOG1001|consensus
Probab=99.68 E-value=5e-18 Score=140.58 Aligned_cols=125 Identities=34% Similarity=0.582 Sum_probs=115.0
Q ss_pred cCchHHHHHHHHHHHhcCCC-eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecc
Q psy13224 36 DCGKLQSLDVILRKLKAGGH-RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTR 114 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~-k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~ 114 (160)
.+.|...+.++|........ +++||+++...++.+...|...++.+..++|.++...|.+.+..|...+...+++++..
T Consensus 520 ~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slk 599 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLK 599 (674)
T ss_pred hhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHH
Confidence 46788888888875443344 99999999999999999999999999999999999999999999997788899999999
Q ss_pred ccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEeC
Q psy13224 115 SGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 160 (160)
Q Consensus 115 ~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~r 160 (160)
+++-|+|+..+++|+..||.|||..+.|++.|+||+||+++|.|+|
T Consensus 600 ag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r 645 (674)
T KOG1001|consen 600 AGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSR 645 (674)
T ss_pred HhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeee
Confidence 9999999999999999999999999999999999999999999986
No 55
>KOG0326|consensus
Probab=99.68 E-value=3.6e-17 Score=122.95 Aligned_cols=122 Identities=16% Similarity=0.243 Sum_probs=108.1
Q ss_pred CCCccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCce
Q psy13224 28 PDPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIF 107 (160)
Q Consensus 28 ~~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~ 107 (160)
.+++-....+.|+.-|.-++.++.- .+.||||++...++.++..+.+.|+++..+|+.+.++.|..++-+|+ ++.++
T Consensus 298 tQyYafV~e~qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr-~G~cr 374 (459)
T KOG0326|consen 298 TQYYAFVEERQKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFR-NGKCR 374 (459)
T ss_pred hhheeeechhhhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhh-ccccc
Confidence 3444455567899999999987643 48999999999999999999999999999999999999999999997 45555
Q ss_pred EEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCC
Q psy13224 108 CFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT 153 (160)
Q Consensus 108 vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~ 153 (160)
.|++++...+|+|+|.++.||+||.|.+++.|.+|+||.+|+|.-
T Consensus 375 -nLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhl 419 (459)
T KOG0326|consen 375 -NLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHL 419 (459)
T ss_pred -eeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCc
Confidence 667889999999999999999999999999999999999999964
No 56
>KOG1016|consensus
Probab=99.68 E-value=3.5e-17 Score=134.37 Aligned_cols=125 Identities=39% Similarity=0.628 Sum_probs=112.6
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc------------------CCeEEEEECCCCHHHHHHHH
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH------------------GHIYLRLDGTTKVDQRQVLM 97 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~------------------~~~~~~~~g~~~~~~r~~~~ 97 (160)
.++|...+.+++++-...|.++|||++....++.|++.|.+. ...+..++|..+.++|.+++
T Consensus 701 n~pk~V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLi 780 (1387)
T KOG1016|consen 701 NGPKIVISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLI 780 (1387)
T ss_pred CCCceEEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHH
Confidence 367888888888877777899999999999999999999854 23477899999999999999
Q ss_pred HHhccCCCce-EEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEeC
Q psy13224 98 ERFNMDARIF-CFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 160 (160)
Q Consensus 98 ~~f~~~~~~~-vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~r 160 (160)
++|++..+.. .+++++.++..|+||-.++.+|.+|..|||-.-.|++.|++|+||+|+|+|||
T Consensus 781 nqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYR 844 (1387)
T KOG1016|consen 781 NQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYR 844 (1387)
T ss_pred HhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEe
Confidence 9999777766 57889999999999999999999999999999999999999999999999998
No 57
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.67 E-value=2.8e-16 Score=132.65 Aligned_cols=111 Identities=21% Similarity=0.193 Sum_probs=95.1
Q ss_pred HHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc--------CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q psy13224 46 ILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH--------GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGG 117 (160)
Q Consensus 46 ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~--------~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~ 117 (160)
++..+...+.++||||++...++.+...|... +.++..+||+.++++|.++.++|. .+...+|++|++++
T Consensus 263 ~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~--~G~i~vLVaTd~le 340 (742)
T TIGR03817 263 LLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALR--DGELLGVATTNALE 340 (742)
T ss_pred HHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHH--cCCceEEEECchHh
Confidence 34344445789999999999999999887753 567789999999999999999996 34445889999999
Q ss_pred cccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEE
Q psy13224 118 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHI 158 (160)
Q Consensus 118 ~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i 158 (160)
+|+|+++++.||+++.|-+...|.||+||++|.|+...+.+
T Consensus 341 rGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~ 381 (742)
T TIGR03817 341 LGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVL 381 (742)
T ss_pred ccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEE
Confidence 99999999999999999999999999999999998766443
No 58
>KOG0344|consensus
Probab=99.63 E-value=2.6e-15 Score=120.05 Aligned_cols=118 Identities=24% Similarity=0.235 Sum_probs=105.8
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHH-HhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecc
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFL-NFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTR 114 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l-~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~ 114 (160)
..+|+.++.+++..- -...++||.++.+.+..|.+.| .-.++.+.++||+.++.+|...++.|+ .+...+|++|+
T Consensus 371 e~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR--~g~IwvLicTd 446 (593)
T KOG0344|consen 371 EKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFR--IGKIWVLICTD 446 (593)
T ss_pred chhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHh--ccCeeEEEehh
Confidence 357999999999764 3459999999999999999999 567999999999999999999999995 45566899999
Q ss_pred ccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceE
Q psy13224 115 SGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVH 157 (160)
Q Consensus 115 ~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~ 157 (160)
+.++|+|+.+++.||+||.|-+-..|++|+||++|.|+.....
T Consensus 447 ll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Ai 489 (593)
T KOG0344|consen 447 LLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAI 489 (593)
T ss_pred hhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceE
Confidence 9999999999999999999999999999999999999876644
No 59
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.63 E-value=6e-15 Score=122.72 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=104.3
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
..|..++.+.+.+....|.++||||++.+..+.+...|...|+++..+||. +.+|+..+..|. ++...++++|+++
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~a--g~~g~VtIATnmA 463 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQA--GRKGAVTIATNMA 463 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhc--CCCceEEEEeccc
Confidence 458878777776667789999999999999999999999999999999999 678888999995 3444488899999
Q ss_pred cccccccc-------CCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 117 GVGINLTG-------ADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 117 ~~Gldl~~-------~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
|||+|++. .-+||++++|-+...+.|+.||++|.|....+..|
T Consensus 464 gRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ 513 (745)
T TIGR00963 464 GRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFF 513 (745)
T ss_pred cCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEE
Confidence 99999987 66999999999999999999999999998775543
No 60
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.63 E-value=4e-15 Score=121.02 Aligned_cols=104 Identities=17% Similarity=0.204 Sum_probs=95.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeC
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYD 132 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~ 132 (160)
.+...||||.+...++.+++.|...|++...+||+++.++|..+.+.|.+.+ ..++++|.+.|.|+|-+++..||+||
T Consensus 229 ~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~--~~iiVAT~AFGMGIdKpdVRfViH~~ 306 (590)
T COG0514 229 LSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDE--IKVMVATNAFGMGIDKPDVRFVIHYD 306 (590)
T ss_pred cCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCC--CcEEEEeccccCccCCCCceEEEEec
Confidence 3457899999999999999999999999999999999999999999997433 34888999999999999999999999
Q ss_pred CCCCcChhhHHHHHHHhcCCCCceEE
Q psy13224 133 SDWNPTMDAQAQDRCHRIGQTRDVHI 158 (160)
Q Consensus 133 ~~~~~~~~~Q~~gR~~R~gq~~~v~i 158 (160)
+|.+...|.|-+||++|.|....+..
T Consensus 307 lP~s~EsYyQE~GRAGRDG~~a~ail 332 (590)
T COG0514 307 LPGSIESYYQETGRAGRDGLPAEAIL 332 (590)
T ss_pred CCCCHHHHHHHHhhccCCCCcceEEE
Confidence 99999999999999999998877654
No 61
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.62 E-value=4.1e-15 Score=124.24 Aligned_cols=119 Identities=17% Similarity=0.183 Sum_probs=103.0
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccc
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~ 115 (160)
...|..++.+.+......+.++||||++.+..+.+...|...|+++..+||...+.++......+ ..+ -++++|++
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag--~~g--~VlIATdm 481 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAG--QKG--AVTVATSM 481 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcC--CCC--eEEEEccc
Confidence 45689998888887767788999999999999999999999999999999999988887766655 333 37899999
Q ss_pred cccccccc---------cCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 116 GGVGINLT---------GADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 116 ~~~Gldl~---------~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+|||+|++ +.+.|+++++|..... .|+.||++|.|....+..|
T Consensus 482 AgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~ 533 (762)
T TIGR03714 482 AGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFF 533 (762)
T ss_pred cccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEE
Confidence 99999999 9999999999988765 8999999999988765443
No 62
>KOG0338|consensus
Probab=99.61 E-value=2.1e-15 Score=119.27 Aligned_cols=114 Identities=18% Similarity=0.277 Sum_probs=102.4
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
..+...|..++.... ..+++||+.+...++.+.-.|...|+++.-+||++++.+|...+..|.. . ..-+|++|+++
T Consensus 411 ~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~-~-eidvLiaTDvA 486 (691)
T KOG0338|consen 411 GDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKK-E-EIDVLIATDVA 486 (691)
T ss_pred cccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHh-c-cCCEEEEechh
Confidence 457788888887765 4599999999999999999999999999999999999999999999963 3 23388899999
Q ss_pred ccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCC
Q psy13224 117 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTR 154 (160)
Q Consensus 117 ~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~ 154 (160)
++|||+.++.+||+|+.|.+...|.||+||..|.|+..
T Consensus 487 sRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaG 524 (691)
T KOG0338|consen 487 SRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAG 524 (691)
T ss_pred hccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCc
Confidence 99999999999999999999999999999999999754
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.61 E-value=1.3e-14 Score=113.27 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=94.9
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCC--eEEEEECCCCHHHHHHH----HHHhccCCCceEEEE
Q psy13224 38 GKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGH--IYLRLDGTTKVDQRQVL----MERFNMDARIFCFIL 111 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~--~~~~~~g~~~~~~r~~~----~~~f~~~~~~~vll~ 111 (160)
.|...+.++++.. ..++++||||++.+.++.+.+.|+..+. .+..+||+.++.+|.+. ++.|. .+...+|+
T Consensus 207 ~~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~--~~~~~ilv 283 (358)
T TIGR01587 207 GEISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMK--KNEKFVIV 283 (358)
T ss_pred cCHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhc--CCCCeEEE
Confidence 5677777777543 4567999999999999999999988765 58999999999999764 78885 34455888
Q ss_pred eccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCC----ceEEe
Q psy13224 112 STRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTR----DVHIY 159 (160)
Q Consensus 112 ~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~----~v~i~ 159 (160)
+|+++++|+|++ ++.+|.+..| +..+.||+||++|.|... .|+||
T Consensus 284 aT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~ 332 (358)
T TIGR01587 284 ATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYII 332 (358)
T ss_pred ECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEE
Confidence 999999999995 8888887765 678999999999999754 46665
No 64
>KOG0327|consensus
Probab=99.61 E-value=3.2e-15 Score=114.43 Aligned_cols=113 Identities=24% Similarity=0.288 Sum_probs=101.4
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
..|+.-|..+.+ .-.+.++||++.+.++.+...|..+++..+.+||.+.+.+|...+..|+ .+..-+|++++..
T Consensus 250 ~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~--~gssrvlIttdl~ 323 (397)
T KOG0327|consen 250 EEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFR--SGSSRVLITTDLL 323 (397)
T ss_pred cccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhh--cCCceEEeecccc
Confidence 448888888876 3458899999999999999999999999999999999999999999996 3444477888999
Q ss_pred ccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCc
Q psy13224 117 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRD 155 (160)
Q Consensus 117 ~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~ 155 (160)
++|+|++.++-||+|+.|-+...|.+|+||++|+|.+.-
T Consensus 324 argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~ 362 (397)
T KOG0327|consen 324 ARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGV 362 (397)
T ss_pred ccccchhhcceeeeeccccchhhhhhhcccccccCCCce
Confidence 999999999999999999999999999999999997654
No 65
>KOG0347|consensus
Probab=99.61 E-value=1.2e-15 Score=121.45 Aligned_cols=99 Identities=19% Similarity=0.267 Sum_probs=92.1
Q ss_pred CCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCC
Q psy13224 54 GHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDS 133 (160)
Q Consensus 54 ~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~ 133 (160)
.++.|||||..+.+..|...|+..+++...+|+.+.+.+|.+.+.+|.+. ...+|++|+++++|||+|++.|||+|.-
T Consensus 463 PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~--~~~VLiaTDVAARGLDIp~V~HVIHYqV 540 (731)
T KOG0347|consen 463 PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQS--PSGVLIATDVAARGLDIPGVQHVIHYQV 540 (731)
T ss_pred CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcC--CCeEEEeehhhhccCCCCCcceEEEeec
Confidence 45999999999999999999999999999999999999999999999654 4559999999999999999999999999
Q ss_pred CCCcChhhHHHHHHHhcCCCC
Q psy13224 134 DWNPTMDAQAQDRCHRIGQTR 154 (160)
Q Consensus 134 ~~~~~~~~Q~~gR~~R~gq~~ 154 (160)
|.+...|.||.||..|.+...
T Consensus 541 PrtseiYVHRSGRTARA~~~G 561 (731)
T KOG0347|consen 541 PRTSEIYVHRSGRTARANSEG 561 (731)
T ss_pred CCccceeEecccccccccCCC
Confidence 999999999999999987543
No 66
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.61 E-value=8.4e-15 Score=125.77 Aligned_cols=109 Identities=18% Similarity=0.091 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc------CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecc
Q psy13224 41 QSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH------GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTR 114 (160)
Q Consensus 41 ~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~------~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~ 114 (160)
..+...+..+...++++||||++...++.+...|... +..+..+||++++++|..+.+.|+ .+...+|++|+
T Consensus 271 ~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk--~G~i~vLVaTs 348 (876)
T PRK13767 271 EALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLK--RGELKVVVSST 348 (876)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHH--cCCCeEEEECC
Confidence 3444555555556789999999999999999888763 467889999999999999999996 33345888999
Q ss_pred ccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcC
Q psy13224 115 SGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIG 151 (160)
Q Consensus 115 ~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 151 (160)
++++|+|+++++.||++++|.+...+.||+||++|.+
T Consensus 349 ~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~ 385 (876)
T PRK13767 349 SLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRL 385 (876)
T ss_pred hHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCC
Confidence 9999999999999999999999999999999999864
No 67
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.60 E-value=1.3e-14 Score=120.75 Aligned_cols=120 Identities=20% Similarity=0.186 Sum_probs=104.1
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
.++++.|.+-+....+.+.+++|||++...++.+.+.|...|+++..+||..+..+|.+.+..|. .+...++++++.+
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr--~G~i~VLV~t~~L 502 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLR--LGEFDVLVGINLL 502 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHh--cCCceEEEEcChh
Confidence 45777777777777778899999999999999999999999999999999999999999999995 4445578889999
Q ss_pred ccccccccCCEEEEeC-----CCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 117 GVGINLTGADTVVFYD-----SDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 117 ~~Gldl~~~~~vi~~~-----~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
++|+|++.++.|+++| .|.+...++|++||++|.. ...|..|
T Consensus 503 ~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~G~vi~~ 549 (655)
T TIGR00631 503 REGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKVIMY 549 (655)
T ss_pred cCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-CCEEEEE
Confidence 9999999999999999 5778889999999999984 4445443
No 68
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.60 E-value=1.9e-14 Score=120.11 Aligned_cols=119 Identities=21% Similarity=0.208 Sum_probs=103.1
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
.+++..+.+.|......+.+++|||++...++.+.+.|...|+++..+||+.+..+|...+..|. .+...++++++.+
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~--~g~i~vlV~t~~L 506 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLR--LGEFDVLVGINLL 506 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHH--cCCceEEEEeCHH
Confidence 35677777777777778899999999999999999999999999999999999999999999995 3445577889999
Q ss_pred ccccccccCCEEEEeCC-----CCCcChhhHHHHHHHhcCCCCceEE
Q psy13224 117 GVGINLTGADTVVFYDS-----DWNPTMDAQAQDRCHRIGQTRDVHI 158 (160)
Q Consensus 117 ~~Gldl~~~~~vi~~~~-----~~~~~~~~Q~~gR~~R~gq~~~v~i 158 (160)
++|+|++.++.||++|. |.++..+.|++||++|. ....|..
T Consensus 507 ~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~ 552 (652)
T PRK05298 507 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIL 552 (652)
T ss_pred hCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEE
Confidence 99999999999999995 56888999999999995 4444443
No 69
>KOG0350|consensus
Probab=99.59 E-value=4.4e-15 Score=117.08 Aligned_cols=129 Identities=16% Similarity=0.184 Sum_probs=106.0
Q ss_pred hhcCCCCccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHH----hcCCeEEEEECCCCHHHHHHHHHH
Q psy13224 24 CTQFPDPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLN----FHGHIYLRLDGTTKVDQRQVLMER 99 (160)
Q Consensus 24 ~~~~~~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~----~~~~~~~~~~g~~~~~~r~~~~~~ 99 (160)
+.......+.....-|...+..++.. ....++|+|++..+.+..+...|+ .-.+++..++|..+.+.|.+.+..
T Consensus 401 p~~l~~~~vv~~~~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~ 478 (620)
T KOG0350|consen 401 PSSLSHRLVVTEPKFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEK 478 (620)
T ss_pred ChhhhhceeecccccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHH
Confidence 34444444333333688888888875 346799999999999999988887 236667779999999999999999
Q ss_pred hccCCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCce
Q psy13224 100 FNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 156 (160)
Q Consensus 100 f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v 156 (160)
|+ .+...+|+++|+++||+|+.+++.||+||||.+...|.||+||..|.||..-+
T Consensus 479 f~--~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a 533 (620)
T KOG0350|consen 479 FA--KGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYA 533 (620)
T ss_pred Hh--cCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceE
Confidence 96 34444788889999999999999999999999999999999999999998765
No 70
>KOG0334|consensus
Probab=99.58 E-value=6e-15 Score=124.30 Aligned_cols=133 Identities=18% Similarity=0.193 Sum_probs=116.7
Q ss_pred hhcCCCCccccc-cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhcc
Q psy13224 24 CTQFPDPRLIQY-DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNM 102 (160)
Q Consensus 24 ~~~~~~~~~~~~-~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~ 102 (160)
+....+...+.. .+.|+..|.+||....+ +.++|||++..+.++.+.+.|.+.|+.+..+||+.++.+|+..+.+|+
T Consensus 583 ~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK- 660 (997)
T KOG0334|consen 583 CKEVTQVVRVCAIENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFK- 660 (997)
T ss_pred eccceEEEEEecCchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHh-
Confidence 344444444555 67899999999988765 569999999999999999999999999999999999999999999995
Q ss_pred CCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 103 DARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 103 ~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
.+...+|+.|+++++|||+.....||+||.|-....|.+|.||++|-|++..+..|
T Consensus 661 -~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtF 716 (997)
T KOG0334|consen 661 -NGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTF 716 (997)
T ss_pred -ccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEE
Confidence 45556889999999999999999999999999999999999999999998876665
No 71
>KOG0339|consensus
Probab=99.58 E-value=8.6e-15 Score=115.89 Aligned_cols=119 Identities=21% Similarity=0.253 Sum_probs=105.3
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
..|+.+|.+-|.+.... .++|||+......+.++..|+..++++..+||...+++|.+.+.+|. .+..-+|+.++++
T Consensus 452 ~~Kl~wl~~~L~~f~S~-gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fK--kk~~~VlvatDva 528 (731)
T KOG0339|consen 452 EKKLNWLLRHLVEFSSE-GKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFK--KKRKPVLVATDVA 528 (731)
T ss_pred HHHHHHHHHHhhhhccC-CcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHh--hcCCceEEEeeHh
Confidence 46889888877765443 49999999999999999999999999999999999999999999995 4444488889999
Q ss_pred ccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEE
Q psy13224 117 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHI 158 (160)
Q Consensus 117 ~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i 158 (160)
++|+|++...+||+||.-.+...+.|++||.+|-|.+...+-
T Consensus 529 argldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayT 570 (731)
T KOG0339|consen 529 ARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYT 570 (731)
T ss_pred hcCCCccccceeecccccchhHHHHHHhhhcccccccceeeE
Confidence 999999999999999999999999999999999998765543
No 72
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=3.1e-14 Score=119.33 Aligned_cols=120 Identities=18% Similarity=0.244 Sum_probs=104.0
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccc
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~ 115 (160)
...|..++.+.+......+.++||||++.+..+.+...|.+.|+++..+||.....++..+...+ .++. ++++|++
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag--~~g~--VtIATnm 497 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAG--QRGA--VTIATNM 497 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcC--CCce--EEEEecc
Confidence 34688888888877677889999999999999999999999999999999998877777666666 3434 8889999
Q ss_pred cccccccc---cCC-----EEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 116 GGVGINLT---GAD-----TVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 116 ~~~Gldl~---~~~-----~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+|||+|+. ++. +||.++.|-+...+.|+.||++|.|....+..|
T Consensus 498 AGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~ 549 (796)
T PRK12906 498 AGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY 549 (796)
T ss_pred ccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEE
Confidence 99999995 778 999999999999999999999999988776543
No 73
>KOG4284|consensus
Probab=99.56 E-value=9.4e-15 Score=118.45 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=102.3
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q psy13224 38 GKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGG 117 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~ 117 (160)
-|+..|-++++.+ .-.+.||||+..-.++-++..|...|+.+..+.|.+++.+|..++++++ .-..-+|++|+..+
T Consensus 258 lklq~L~~vf~~i--py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr--~f~~rILVsTDLta 333 (980)
T KOG4284|consen 258 LKLQKLTHVFKSI--PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLR--AFRVRILVSTDLTA 333 (980)
T ss_pred HHHHHHHHHHhhC--chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhh--hceEEEEEecchhh
Confidence 3888888888754 3459999999999999999999999999999999999999999999995 33344899999999
Q ss_pred cccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCc
Q psy13224 118 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRD 155 (160)
Q Consensus 118 ~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~ 155 (160)
+|+|-.+++-||++|+|.+...|.|||||++|+|...-
T Consensus 334 RGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~ 371 (980)
T KOG4284|consen 334 RGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGA 371 (980)
T ss_pred ccCCccccceEEecCCCcchHHHHHHhhhcccccccce
Confidence 99999999999999999999999999999999997554
No 74
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.56 E-value=3.6e-14 Score=121.76 Aligned_cols=107 Identities=16% Similarity=0.156 Sum_probs=93.1
Q ss_pred hcCCCeEEEEeccHHHHHHHHHHHHhc--CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEE
Q psy13224 51 KAGGHRVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTV 128 (160)
Q Consensus 51 ~~~~~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~v 128 (160)
...+.++++||+..+.++.+.+.|+.. ++++..+||.+++++|..++.+|.+ +...+|++|+++++|+|++++++|
T Consensus 657 l~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~--Gk~~ILVaT~iie~GIDIp~v~~V 734 (926)
T TIGR00580 657 LLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK--GEFQVLVCTTIIETGIDIPNANTI 734 (926)
T ss_pred HHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc--CCCCEEEECChhhcccccccCCEE
Confidence 345789999999999999999999974 7899999999999999999999963 444588899999999999999999
Q ss_pred EEeCCC-CCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 129 VFYDSD-WNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 129 i~~~~~-~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
|+++++ +....+.|++||++|.|++..|.++
T Consensus 735 Ii~~a~~~gls~l~Qr~GRvGR~g~~g~aill 766 (926)
T TIGR00580 735 IIERADKFGLAQLYQLRGRVGRSKKKAYAYLL 766 (926)
T ss_pred EEecCCCCCHHHHHHHhcCCCCCCCCeEEEEE
Confidence 999885 4566788999999999988776543
No 75
>KOG0346|consensus
Probab=99.55 E-value=1.9e-14 Score=112.13 Aligned_cols=129 Identities=19% Similarity=0.190 Sum_probs=109.4
Q ss_pred cCCCCccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCC
Q psy13224 26 QFPDPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDAR 105 (160)
Q Consensus 26 ~~~~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 105 (160)
...++.+.+.+..|+..+..+++--.- -+|.|||.++.+.+-.+.-+|+.-|++.++++|+++...|..++++|| .+
T Consensus 241 qL~Qy~v~cse~DKflllyallKL~LI-~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFN--kG 317 (569)
T KOG0346|consen 241 QLTQYQVKCSEEDKFLLLYALLKLRLI-RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFN--KG 317 (569)
T ss_pred cceEEEEEeccchhHHHHHHHHHHHHh-cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhh--Cc
Confidence 345566667777899999999864333 359999999999999999999999999999999999999999999996 44
Q ss_pred ceEEEEecc-----------------------------------ccccccccccCCEEEEeCCCCCcChhhHHHHHHHhc
Q psy13224 106 IFCFILSTR-----------------------------------SGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRI 150 (160)
Q Consensus 106 ~~vll~~~~-----------------------------------~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 150 (160)
.+-++++|| ..++|+|+++++.|++||.|-+...|+||+||+.|-
T Consensus 318 ~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg 397 (569)
T KOG0346|consen 318 LYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARG 397 (569)
T ss_pred ceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccC
Confidence 445555555 246899999999999999999999999999999999
Q ss_pred CCCCceE
Q psy13224 151 GQTRDVH 157 (160)
Q Consensus 151 gq~~~v~ 157 (160)
|.+..+.
T Consensus 398 ~n~Gtal 404 (569)
T KOG0346|consen 398 NNKGTAL 404 (569)
T ss_pred CCCCceE
Confidence 9887754
No 76
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.54 E-value=1.1e-13 Score=116.29 Aligned_cols=120 Identities=14% Similarity=0.126 Sum_probs=94.9
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEeccHH--------HHHHHHHHHHhc--CCeEEEEECCCCHHHHHHHHHHhccCCCce
Q psy13224 38 GKLQSLDVILRKLKAGGHRVLIFTQMTR--------MLDVLEAFLNFH--GHIYLRLDGTTKVDQRQVLMERFNMDARIF 107 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~k~lif~~~~~--------~~~~l~~~l~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~ 107 (160)
.+...+.+.+....+.+++++|||+..+ .+..+.+.|... ++++..+||++++++|..++++|.+ +..
T Consensus 455 ~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~--g~~ 532 (681)
T PRK10917 455 SRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKA--GEI 532 (681)
T ss_pred ccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHc--CCC
Confidence 3445555566555577889999998533 344556666654 5789999999999999999999963 334
Q ss_pred EEEEeccccccccccccCCEEEEeCCCC-CcChhhHHHHHHHhcCCCCceEEe
Q psy13224 108 CFILSTRSGGVGINLTGADTVVFYDSDW-NPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 108 vll~~~~~~~~Gldl~~~~~vi~~~~~~-~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
.+|++|+++++|+|+++++.||+++++. ....+.|+.||++|.|.+..|.++
T Consensus 533 ~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill 585 (681)
T PRK10917 533 DILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLL 585 (681)
T ss_pred CEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEE
Confidence 4888999999999999999999999886 467788999999999987777654
No 77
>KOG0354|consensus
Probab=99.53 E-value=1.1e-13 Score=114.35 Aligned_cols=122 Identities=20% Similarity=0.259 Sum_probs=104.4
Q ss_pred ccCchHHHHHHHHHHHhcC--CCeEEEEeccHHHHHHHHHHHH-h--cCCeEEEEEC--------CCCHHHHHHHHHHhc
Q psy13224 35 YDCGKLQSLDVILRKLKAG--GHRVLIFTQMTRMLDVLEAFLN-F--HGHIYLRLDG--------TTKVDQRQVLMERFN 101 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~~~--~~k~lif~~~~~~~~~l~~~l~-~--~~~~~~~~~g--------~~~~~~r~~~~~~f~ 101 (160)
.+.+|+..+.+++.+.... +.++|||+.+++.++.|...|. . .|++...+.| ++++.+..+.++.|+
T Consensus 392 ~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr 471 (746)
T KOG0354|consen 392 KENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFR 471 (746)
T ss_pred ccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHh
Confidence 4578999999999887665 3599999999999999999998 3 3566666666 788889999999996
Q ss_pred cCCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 102 MDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 102 ~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
.+...+|++|.+|.+|||++.|+-||+||..-||-...||.|| +|.-..+-|.++
T Consensus 472 --~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~ns~~vll~ 526 (746)
T KOG0354|consen 472 --DGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRARNSKCVLLT 526 (746)
T ss_pred --CCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccccCCeEEEEE
Confidence 3556689999999999999999999999999999999999999 888777766654
No 78
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.53 E-value=7.9e-14 Score=117.67 Aligned_cols=100 Identities=23% Similarity=0.320 Sum_probs=84.5
Q ss_pred hcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHH-----HHHHHhcc----CC-----CceEEEEecccc
Q psy13224 51 KAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQ-----VLMERFNM----DA-----RIFCFILSTRSG 116 (160)
Q Consensus 51 ~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~-----~~~~~f~~----~~-----~~~vll~~~~~~ 116 (160)
...+.++||||++...++.+.+.|...++ ..+||.+++.+|. .+++.|.. .. ....+|++|+++
T Consensus 269 ~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVa 346 (844)
T TIGR02621 269 KDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAG 346 (844)
T ss_pred hhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchh
Confidence 34567999999999999999999998887 8999999999999 78899964 11 124688999999
Q ss_pred ccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCc
Q psy13224 117 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRD 155 (160)
Q Consensus 117 ~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~ 155 (160)
++|+|+.. +++|+...| ...|+||+||++|.|....
T Consensus 347 erGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~ 382 (844)
T TIGR02621 347 EVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQA 382 (844)
T ss_pred hhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCC
Confidence 99999986 888887766 4689999999999998544
No 79
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.53 E-value=1e-13 Score=121.29 Aligned_cols=113 Identities=17% Similarity=0.192 Sum_probs=94.9
Q ss_pred HHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc--CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccc
Q psy13224 44 DVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGIN 121 (160)
Q Consensus 44 ~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gld 121 (160)
..++.++. .+++++|||+..+.++.+.+.|... +..+..+||++++++|.+++.+|.+ +..-+|++|+++++|+|
T Consensus 800 ~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~--Gk~~VLVaTdIierGID 876 (1147)
T PRK10689 800 EAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH--QRFNVLVCTTIIETGID 876 (1147)
T ss_pred HHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh--cCCCEEEECchhhcccc
Confidence 34455543 4679999999999999999999887 7889999999999999999999974 33348889999999999
Q ss_pred cccCCEEEEeCCC-CCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 122 LTGADTVVFYDSD-WNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 122 l~~~~~vi~~~~~-~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
++++++||..+++ ++...+.|+.||++|.|++.-|+++
T Consensus 877 IP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll 915 (1147)
T PRK10689 877 IPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLL 915 (1147)
T ss_pred cccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEE
Confidence 9999999977653 6777899999999999988776653
No 80
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.51 E-value=2.7e-13 Score=113.08 Aligned_cols=117 Identities=17% Similarity=0.171 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhcCCCeEEEEeccHH--------HHHHHHHHHHh--cCCeEEEEECCCCHHHHHHHHHHhccCCCceEEE
Q psy13224 41 QSLDVILRKLKAGGHRVLIFTQMTR--------MLDVLEAFLNF--HGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFI 110 (160)
Q Consensus 41 ~~l~~ll~~~~~~~~k~lif~~~~~--------~~~~l~~~l~~--~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll 110 (160)
..+.+.+.+....+++++|||...+ .+..+.+.|.. .++.+..+||++++++|..+++.|.+ +...+|
T Consensus 435 ~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~--g~~~IL 512 (630)
T TIGR00643 435 DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFRE--GEVDIL 512 (630)
T ss_pred HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHc--CCCCEE
Confidence 4555555555567889999997652 34455566654 37889999999999999999999963 344588
Q ss_pred EeccccccccccccCCEEEEeCCCC-CcChhhHHHHHHHhcCCCCceEEe
Q psy13224 111 LSTRSGGVGINLTGADTVVFYDSDW-NPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 111 ~~~~~~~~Gldl~~~~~vi~~~~~~-~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
++|+++++|+|+++++.||+++++. +...+.|+.||++|.|.+..|.++
T Consensus 513 VaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~ 562 (630)
T TIGR00643 513 VATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLV 562 (630)
T ss_pred EECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEE
Confidence 8999999999999999999999875 567788999999999987776553
No 81
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.51 E-value=1.6e-13 Score=116.46 Aligned_cols=120 Identities=18% Similarity=0.219 Sum_probs=103.0
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccc
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~ 115 (160)
...|..++.+.+......+.++||||++.+..+.|.+.|...|+++..+|+ .+.+|...+..|. ++...++++|++
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~A--G~~g~VtIATNM 655 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEA--GQKGAVTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhc--CCCCeEEEeccC
Confidence 346889999999877778899999999999999999999999999999998 5678889999995 444448889999
Q ss_pred cccccccc---cCC-----EEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 116 GGVGINLT---GAD-----TVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 116 ~~~Gldl~---~~~-----~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+|||+|++ .+. +||.++.+-+...+.|+.||++|.|.......|
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ff 707 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFY 707 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEE
Confidence 99999998 343 348889999999999999999999988776443
No 82
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.50 E-value=3.7e-13 Score=108.02 Aligned_cols=118 Identities=18% Similarity=0.254 Sum_probs=102.4
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccc
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~ 115 (160)
...|...+..++.... .+.+++||+........+...|...++ +..++|..+..+|..+++.|+..+ ..+|+++.+
T Consensus 266 ~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~--~~~lv~~~v 341 (442)
T COG1061 266 SERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG--IKVLVTVKV 341 (442)
T ss_pred cHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC--CCEEEEeee
Confidence 3467777777777554 678999999999999999999998888 889999999999999999997433 668889999
Q ss_pred cccccccccCCEEEEeCCCCCcChhhHHHHHHHhc-CCCCceE
Q psy13224 116 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRI-GQTRDVH 157 (160)
Q Consensus 116 ~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~-gq~~~v~ 157 (160)
+.+|+|+|+++.+|...|+-++..+.|++||+.|. ...+.+.
T Consensus 342 l~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~ 384 (442)
T COG1061 342 LDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTL 384 (442)
T ss_pred ccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceE
Confidence 99999999999999999999999999999999994 4444433
No 83
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.42 E-value=1.4e-12 Score=115.59 Aligned_cols=103 Identities=19% Similarity=0.209 Sum_probs=86.2
Q ss_pred HHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcC---------------------------------CeEEEEECCCCHH
Q psy13224 45 VILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHG---------------------------------HIYLRLDGTTKVD 91 (160)
Q Consensus 45 ~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~---------------------------------~~~~~~~g~~~~~ 91 (160)
.++..+ ..+.++|||+++...++.+...|+... +....+||+++++
T Consensus 236 ~il~~i-~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSke 314 (1490)
T PRK09751 236 GILDEV-LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKE 314 (1490)
T ss_pred HHHHHH-hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHH
Confidence 344433 346799999999999999998887531 1246788999999
Q ss_pred HHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhc
Q psy13224 92 QRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRI 150 (160)
Q Consensus 92 ~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 150 (160)
+|..+.+.|+ .+..-+|++|++++.|+|++.++.||+++.|.+...+.||+||++|.
T Consensus 315 eR~~IE~~fK--~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 315 QRAITEQALK--SGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHHHHHHHHH--hCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 9999999996 33345888999999999999999999999999999999999999985
No 84
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.41 E-value=2.6e-12 Score=107.25 Aligned_cols=96 Identities=15% Similarity=0.163 Sum_probs=79.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhc--CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEE
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVF 130 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~ 130 (160)
.++++|||++....++.+.+.|+.. ++.+..+||++++. .+.+++|. +.+...+|++|+++++|+|++++++||.
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff-~~gk~kILVATdIAERGIDIp~V~~VID 470 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVY-SSKNPSIIISTPYLESSVTIRNATHVYD 470 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHh-ccCceeEEeccChhhccccccCeeEEEE
Confidence 3568999999999999999999987 79999999999974 45566663 2344568899999999999999999999
Q ss_pred eC---CCC---------CcChhhHHHHHHHhcC
Q psy13224 131 YD---SDW---------NPTMDAQAQDRCHRIG 151 (160)
Q Consensus 131 ~~---~~~---------~~~~~~Q~~gR~~R~g 151 (160)
++ .|. +.+.+.||.||++|.+
T Consensus 471 ~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~ 503 (675)
T PHA02653 471 TGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVS 503 (675)
T ss_pred CCCccCCCcccCcccccCHHHHHHhccCcCCCC
Confidence 97 222 5567889999999983
No 85
>KOG0298|consensus
Probab=99.39 E-value=5.4e-13 Score=114.39 Aligned_cols=119 Identities=29% Similarity=0.324 Sum_probs=99.1
Q ss_pred cCchHHHHHHHHHHHhcC--CCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEec
Q psy13224 36 DCGKLQSLDVILRKLKAG--GHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILST 113 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~--~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~ 113 (160)
-++|.+.+...+..++-. -+++|+|+++....+.++..+...++......++. +-...+..|. +..|+++..
T Consensus 1201 fg~kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~---d~~dc~~~fk---~I~clll~~ 1274 (1394)
T KOG0298|consen 1201 FGTKIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETE---DFDDCIICFK---SIDCLLLFV 1274 (1394)
T ss_pred hccCchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCc---chhhhhhhcc---cceEEEEEe
Confidence 357888887777666443 46999999999999999999999888865544322 3344666663 488899999
Q ss_pred cccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEeC
Q psy13224 114 RSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 160 (160)
Q Consensus 114 ~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~r 160 (160)
..++-|+|+-++.||+..+|--||+.+.|++||+||+||++++.|||
T Consensus 1275 ~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~ 1321 (1394)
T KOG0298|consen 1275 SKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHR 1321 (1394)
T ss_pred ccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhhh
Confidence 99999999999999999999999999999999999999999999886
No 86
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.38 E-value=5.7e-12 Score=107.34 Aligned_cols=97 Identities=13% Similarity=0.136 Sum_probs=83.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHh---cCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEE
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNF---HGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVV 129 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~---~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi 129 (160)
.+.++|||++....++.+.+.|+. .++.+..+||++++++|..+++.|. .+..-+|++|+++++|+|++++++||
T Consensus 208 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~--~G~rkVlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 208 ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDP--QGRRKVVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcc--cCCeEEEEecchHhhcccccCceEEE
Confidence 356899999999999999999987 4789999999999999999999994 45556888999999999999999999
Q ss_pred EeCCCC----CcCh--------------hhHHHHHHHhcC
Q psy13224 130 FYDSDW----NPTM--------------DAQAQDRCHRIG 151 (160)
Q Consensus 130 ~~~~~~----~~~~--------------~~Q~~gR~~R~g 151 (160)
.++.+. ++.. +.||.||++|.+
T Consensus 286 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~ 325 (819)
T TIGR01970 286 DSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLE 325 (819)
T ss_pred EcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCC
Confidence 999764 3333 679999999983
No 87
>PRK02362 ski2-like helicase; Provisional
Probab=99.38 E-value=3.7e-12 Score=108.06 Aligned_cols=102 Identities=19% Similarity=0.190 Sum_probs=83.7
Q ss_pred HhcCCCeEEEEeccHHHHHHHHHHHHhc------------------------------------CCeEEEEECCCCHHHH
Q psy13224 50 LKAGGHRVLIFTQMTRMLDVLEAFLNFH------------------------------------GHIYLRLDGTTKVDQR 93 (160)
Q Consensus 50 ~~~~~~k~lif~~~~~~~~~l~~~l~~~------------------------------------~~~~~~~~g~~~~~~r 93 (160)
....++++||||++...+..++..|... ...+..+||++++++|
T Consensus 239 ~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR 318 (737)
T PRK02362 239 TLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHR 318 (737)
T ss_pred HHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHH
Confidence 3446789999999999877776666432 1356789999999999
Q ss_pred HHHHHHhccCCCceEEEEeccccccccccccCCEEEE----eC-----CCCCcChhhHHHHHHHhcCCC
Q psy13224 94 QVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVF----YD-----SDWNPTMDAQAQDRCHRIGQT 153 (160)
Q Consensus 94 ~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~----~~-----~~~~~~~~~Q~~gR~~R~gq~ 153 (160)
..+.+.|+ .+..-+|++|+++++|+|+|..+.||. || .|.+...+.|++||++|.|..
T Consensus 319 ~~ve~~Fr--~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 319 ELVEDAFR--DRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred HHHHHHHH--cCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 99999996 344458889999999999999988886 66 477888999999999999975
No 88
>KOG0337|consensus
Probab=99.35 E-value=1.1e-12 Score=101.95 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=104.2
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS 112 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~ 112 (160)
.+....|..+|..++..... +++.++|+.+...++.+...|...|+....++|++.+..|.....+|+. ...-+++.
T Consensus 241 ~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~--~k~~~lvv 317 (529)
T KOG0337|consen 241 RVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRG--RKTSILVV 317 (529)
T ss_pred eeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccC--CccceEEE
Confidence 33345677777777765432 4589999999999999999999999999999999999999999999963 33348888
Q ss_pred ccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCce
Q psy13224 113 TRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 156 (160)
Q Consensus 113 ~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v 156 (160)
|+++++|+|++..++||+||.|-++..+.+|+||+.|-|++.-.
T Consensus 318 TdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~a 361 (529)
T KOG0337|consen 318 TDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRA 361 (529)
T ss_pred ehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceE
Confidence 99999999999999999999999999999999999999987654
No 89
>KOG0351|consensus
Probab=99.35 E-value=2.3e-12 Score=110.25 Aligned_cols=145 Identities=16% Similarity=0.124 Sum_probs=115.4
Q ss_pred chhccchhhhhhhcCCCCccccccCchHHHHHHHHHHH--hcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCH
Q psy13224 13 LRLLHPVTSAMCTQFPDPRLIQYDCGKLQSLDVILRKL--KAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKV 90 (160)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~ll~~~--~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~ 90 (160)
|..-.|.+.....+.++.+.......=...+..++... ...+...||||.+...++.++..|...+++...+|+++++
T Consensus 442 L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~ 521 (941)
T KOG0351|consen 442 LGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPP 521 (941)
T ss_pred hCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCH
Confidence 33444445566666666666553222013333344333 2346799999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 91 DQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 91 ~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
.+|..+...|.. ++ ..++++|-+.|.|+|.+++.-||+|..|.+...|.|-+||++|.|+...|..|
T Consensus 522 ~~R~~Vq~~w~~-~~-~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~ 588 (941)
T KOG0351|consen 522 KERETVQKAWMS-DK-IRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLL 588 (941)
T ss_pred HHHHHHHHHHhc-CC-CeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEe
Confidence 999999999973 33 44888889999999999999999999999999999999999999998887765
No 90
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.35 E-value=1.5e-11 Score=103.81 Aligned_cols=120 Identities=18% Similarity=0.209 Sum_probs=104.4
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccc
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~ 115 (160)
...|..++.+.+.+....|.++||||++.+..+.+...|...|+++..+||. +.+|...+..|. ++...++++|++
T Consensus 412 ~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~A--g~~g~VtIATNm 487 (830)
T PRK12904 412 EKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQA--GRPGAVTIATNM 487 (830)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhc--CCCceEEEeccc
Confidence 3468999999888777788999999999999999999999999999999996 678999999995 444458889999
Q ss_pred cccccccc-c-------------------------------------CCEEEEeCCCCCcChhhHHHHHHHhcCCCCceE
Q psy13224 116 GGVGINLT-G-------------------------------------ADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVH 157 (160)
Q Consensus 116 ~~~Gldl~-~-------------------------------------~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~ 157 (160)
+|||+|++ + .=|||-.+.+-|.....|..||++|.|......
T Consensus 488 AGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~ 567 (830)
T PRK12904 488 AGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSR 567 (830)
T ss_pred ccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCcee
Confidence 99999986 4 458899999999999999999999999987765
Q ss_pred Ee
Q psy13224 158 IY 159 (160)
Q Consensus 158 i~ 159 (160)
.|
T Consensus 568 f~ 569 (830)
T PRK12904 568 FY 569 (830)
T ss_pred EE
Confidence 54
No 91
>KOG0349|consensus
Probab=99.35 E-value=4.2e-12 Score=99.43 Aligned_cols=95 Identities=22% Similarity=0.268 Sum_probs=86.4
Q ss_pred CCeEEEEeccHHHHHHHHHHHHhc---CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEE
Q psy13224 54 GHRVLIFTQMTRMLDVLEAFLNFH---GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVF 130 (160)
Q Consensus 54 ~~k~lif~~~~~~~~~l~~~l~~~---~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~ 130 (160)
..+.||||.+...++-|++++... .++++.+||...+.||...++.| +..+.-+|++++++++|+|+.+...+|+
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~F--kk~dvkflictdvaargldi~g~p~~in 582 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESF--KKFDVKFLICTDVAARGLDITGLPFMIN 582 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhh--hhcCeEEEEEehhhhccccccCCceEEE
Confidence 459999999999999999999986 56789999999999999999999 4555559999999999999999999999
Q ss_pred eCCCCCcChhhHHHHHHHhc
Q psy13224 131 YDSDWNPTMDAQAQDRCHRI 150 (160)
Q Consensus 131 ~~~~~~~~~~~Q~~gR~~R~ 150 (160)
...|-+...|.+|+||++|.
T Consensus 583 vtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 583 VTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EecCcccchhhhhhhccchh
Confidence 99999999999999998874
No 92
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.34 E-value=1e-11 Score=105.92 Aligned_cols=97 Identities=15% Similarity=0.120 Sum_probs=84.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHh---cCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEE
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNF---HGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVV 129 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~---~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi 129 (160)
.++.+|||++....++.+.+.|.. .++.+..+||+++.++|.+.+..| ..+..-+|++|+++++|+|++++++||
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~--~~G~rkVlvATnIAErsLtIp~V~~VI 288 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPA--PAGRRKVVLATNIAETSLTIEGIRLVV 288 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccc--cCCCeEEEEecchHHhcccccCceEEE
Confidence 357999999999999999999987 578899999999999999999998 455566899999999999999999999
Q ss_pred EeCCCCCc------------------ChhhHHHHHHHhcC
Q psy13224 130 FYDSDWNP------------------TMDAQAQDRCHRIG 151 (160)
Q Consensus 130 ~~~~~~~~------------------~~~~Q~~gR~~R~g 151 (160)
.++.+..+ ..+.||.||++|.+
T Consensus 289 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~ 328 (812)
T PRK11664 289 DSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLE 328 (812)
T ss_pred ECCCcccccccccCCcceeEEEeechhhhhhhccccCCCC
Confidence 97765432 25789999999984
No 93
>PRK01172 ski2-like helicase; Provisional
Probab=99.32 E-value=1.8e-11 Score=103.02 Aligned_cols=110 Identities=21% Similarity=0.252 Sum_probs=84.6
Q ss_pred HHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc-----C--------------------CeEEEEECCCCHHHHHHHH
Q psy13224 43 LDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH-----G--------------------HIYLRLDGTTKVDQRQVLM 97 (160)
Q Consensus 43 l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~-----~--------------------~~~~~~~g~~~~~~r~~~~ 97 (160)
+..++......++++|||+++...++.+...|... . ..+..+||++++++|..+.
T Consensus 225 ~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve 304 (674)
T PRK01172 225 INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIE 304 (674)
T ss_pred HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHH
Confidence 44556555566789999999999888887777542 1 2366789999999999999
Q ss_pred HHhccCCCceEEEEeccccccccccccCCEEEEeCC---------CCCcChhhHHHHHHHhcCCCCc
Q psy13224 98 ERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDS---------DWNPTMDAQAQDRCHRIGQTRD 155 (160)
Q Consensus 98 ~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~---------~~~~~~~~Q~~gR~~R~gq~~~ 155 (160)
+.|. .+..-+|++|+++++|+|+|. ..||+.+. ++++..+.|++||++|.|....
T Consensus 305 ~~f~--~g~i~VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 368 (674)
T PRK01172 305 EMFR--NRYIKVIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQY 368 (674)
T ss_pred HHHH--cCCCeEEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCc
Confidence 9996 344458889999999999997 46666554 3456677899999999996443
No 94
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.31 E-value=3.4e-11 Score=102.11 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=106.1
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccc
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~ 115 (160)
...|..++.+-+......|..+||||.+.+..+.+..+|...|+++.++|+...+.++..+...|. .+. ++++|++
T Consensus 426 ~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~--~G~--VtIATNm 501 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGR--PGA--VTIATNM 501 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCC--CCc--EEEeccC
Confidence 456888888888888888999999999999999999999999999999999999999999999995 333 8889999
Q ss_pred cccccccc--------------------------------------cCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceE
Q psy13224 116 GGVGINLT--------------------------------------GADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVH 157 (160)
Q Consensus 116 ~~~Gldl~--------------------------------------~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~ 157 (160)
+|||+|+. +.=+||-.+.+-|.....|-.||++|.|......
T Consensus 502 AGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~ 581 (896)
T PRK13104 502 AGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSR 581 (896)
T ss_pred ccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceE
Confidence 99999986 2347888888999999999999999999887765
Q ss_pred Ee
Q psy13224 158 IY 159 (160)
Q Consensus 158 i~ 159 (160)
.|
T Consensus 582 f~ 583 (896)
T PRK13104 582 FY 583 (896)
T ss_pred EE
Confidence 54
No 95
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.26 E-value=3.7e-11 Score=94.15 Aligned_cols=100 Identities=19% Similarity=0.214 Sum_probs=77.6
Q ss_pred chHHHHHHHHHHHh-----cCCCeEEEEeccHHHHHHHHHHHHhcC--CeEEEEECCCCHHHHHHHHHHhccCCCceEEE
Q psy13224 38 GKLQSLDVILRKLK-----AGGHRVLIFTQMTRMLDVLEAFLNFHG--HIYLRLDGTTKVDQRQVLMERFNMDARIFCFI 110 (160)
Q Consensus 38 ~K~~~l~~ll~~~~-----~~~~k~lif~~~~~~~~~l~~~l~~~~--~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll 110 (160)
-|...+..+++.+. ..++++|||+++...++.+...|+..+ +.+..+||..++.+|.+.. ...+|
T Consensus 251 ~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~--------~~~iL 322 (357)
T TIGR03158 251 FKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM--------QFDIL 322 (357)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc--------cCCEE
Confidence 35555555444432 246799999999999999999999864 5788899999999886543 23388
Q ss_pred EeccccccccccccCCEEEEeCCCCCcChhhHHHHHHH
Q psy13224 111 LSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCH 148 (160)
Q Consensus 111 ~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~ 148 (160)
++|+++++|+|++.. .+| ++ |.++..|.||+||++
T Consensus 323 VaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 323 LGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 999999999999875 666 56 678889999999974
No 96
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.26 E-value=6.4e-11 Score=100.33 Aligned_cols=121 Identities=15% Similarity=0.171 Sum_probs=106.5
Q ss_pred ccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecc
Q psy13224 35 YDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTR 114 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~ 114 (160)
+...|..++.+-+..+.+.|.++||||.+.+..+.+..+|...|+++..+|+..+..++..+...|. .+. ++++|+
T Consensus 430 t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~--~G~--VtIATn 505 (908)
T PRK13107 430 TADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGR--TGA--VTIATN 505 (908)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCC--CCc--EEEecC
Confidence 3457888888888888888999999999999999999999999999999999999999999999995 344 888999
Q ss_pred ccccccccc-------------------------------------cCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceE
Q psy13224 115 SGGVGINLT-------------------------------------GADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVH 157 (160)
Q Consensus 115 ~~~~Gldl~-------------------------------------~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~ 157 (160)
++|||+|+. +.=+||-.+.+-|.....|..||++|.|......
T Consensus 506 mAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~ 585 (908)
T PRK13107 506 MAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSR 585 (908)
T ss_pred CcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCcee
Confidence 999999986 3348999999999999999999999999877655
Q ss_pred Ee
Q psy13224 158 IY 159 (160)
Q Consensus 158 i~ 159 (160)
.|
T Consensus 586 f~ 587 (908)
T PRK13107 586 FY 587 (908)
T ss_pred EE
Confidence 44
No 97
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.25 E-value=1.2e-10 Score=102.00 Aligned_cols=103 Identities=17% Similarity=0.289 Sum_probs=84.2
Q ss_pred CCeEEEEeccHHHHHHHHHHHHhc------CC---eEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccccccccccc
Q psy13224 54 GHRVLIFTQMTRMLDVLEAFLNFH------GH---IYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTG 124 (160)
Q Consensus 54 ~~k~lif~~~~~~~~~l~~~l~~~------~~---~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~ 124 (160)
+.|+||||...++++.+.+.|... ++ .+..++|+.+ ++..++++|.+ +....++++++++++|+|+|.
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~-~~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKN-ERLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhC-CCCCeEEEEecccccCCCccc
Confidence 369999999999999888877653 22 3467888875 56789999974 344468889999999999999
Q ss_pred CCEEEEeCCCCCcChhhHHHHHHHhcCC---CCceEEe
Q psy13224 125 ADTVVFYDSDWNPTMDAQAQDRCHRIGQ---TRDVHIY 159 (160)
Q Consensus 125 ~~~vi~~~~~~~~~~~~Q~~gR~~R~gq---~~~v~i~ 159 (160)
+..||++.|+.+...+.|++||+.|... +....||
T Consensus 775 v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~ 812 (1123)
T PRK11448 775 ICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIF 812 (1123)
T ss_pred ccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEE
Confidence 9999999999999999999999999864 4445554
No 98
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.23 E-value=9.8e-11 Score=98.84 Aligned_cols=110 Identities=24% Similarity=0.229 Sum_probs=93.2
Q ss_pred HHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcC-CeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccc
Q psy13224 43 LDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHG-HIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGIN 121 (160)
Q Consensus 43 l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gld 121 (160)
+.+.+.++.++...+|||+|+..+++.+...|+..+ ..+..-||+.+.+.|...-++|.+ ++ --.+++|.+..-|+|
T Consensus 242 ~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~-G~-lravV~TSSLELGID 319 (814)
T COG1201 242 LYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKE-GE-LKAVVATSSLELGID 319 (814)
T ss_pred HHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhc-CC-ceEEEEccchhhccc
Confidence 333444444555699999999999999999999886 889999999999999999999973 33 447778899999999
Q ss_pred cccCCEEEEeCCCCCcChhhHHHHHH-HhcCCCC
Q psy13224 122 LTGADTVVFYDSDWNPTMDAQAQDRC-HRIGQTR 154 (160)
Q Consensus 122 l~~~~~vi~~~~~~~~~~~~Q~~gR~-~R~gq~~ 154 (160)
+.+++.||++..|.+-+.+.||+||+ ||.|.+.
T Consensus 320 iG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~S 353 (814)
T COG1201 320 IGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVS 353 (814)
T ss_pred cCCceEEEEeCCcHHHHHHhHhccccccccCCcc
Confidence 99999999999999999999999999 6677533
No 99
>KOG0352|consensus
Probab=99.23 E-value=1.7e-11 Score=95.78 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=94.8
Q ss_pred eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCCCC
Q psy13224 56 RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDW 135 (160)
Q Consensus 56 k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~ 135 (160)
--||||.+.+.++.++-.|+..|+....+|.++...||..+.+.|.+.... +|+.|.+.|.|+|-+++..||+.+++.
T Consensus 257 CGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P--vI~AT~SFGMGVDKp~VRFViHW~~~q 334 (641)
T KOG0352|consen 257 CGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP--VIAATVSFGMGVDKPDVRFVIHWSPSQ 334 (641)
T ss_pred ceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC--EEEEEeccccccCCcceeEEEecCchh
Confidence 679999999999999999999999999999999999999999999854444 888899999999999999999999999
Q ss_pred CcChhhHHHHHHHhcCCCCceEEe
Q psy13224 136 NPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 136 ~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
|..-|.|-.||++|.|-+.=|..|
T Consensus 335 n~AgYYQESGRAGRDGk~SyCRLY 358 (641)
T KOG0352|consen 335 NLAGYYQESGRAGRDGKRSYCRLY 358 (641)
T ss_pred hhHHHHHhccccccCCCccceeee
Confidence 999999999999999988777776
No 100
>PRK00254 ski2-like helicase; Provisional
Probab=99.19 E-value=1.1e-10 Score=98.85 Aligned_cols=107 Identities=16% Similarity=0.108 Sum_probs=79.5
Q ss_pred HHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHh---------------------------------cCCeEEEEECCCCH
Q psy13224 44 DVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNF---------------------------------HGHIYLRLDGTTKV 90 (160)
Q Consensus 44 ~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~---------------------------------~~~~~~~~~g~~~~ 90 (160)
..++......++++||||++...+..++..|.. ....+..+||++++
T Consensus 228 ~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~ 307 (720)
T PRK00254 228 ESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGR 307 (720)
T ss_pred HHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCH
Confidence 344444445678999999998877655544421 12347889999999
Q ss_pred HHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEE-------eCC-CCCcChhhHHHHHHHhcCC
Q psy13224 91 DQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVF-------YDS-DWNPTMDAQAQDRCHRIGQ 152 (160)
Q Consensus 91 ~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~-------~~~-~~~~~~~~Q~~gR~~R~gq 152 (160)
++|..+.+.|+ .+...+|++|+++++|+|++..+.||. ++. +.....+.|++||++|.|.
T Consensus 308 ~eR~~ve~~F~--~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~ 375 (720)
T PRK00254 308 TERVLIEDAFR--EGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKY 375 (720)
T ss_pred HHHHHHHHHHH--CCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCc
Confidence 99999999996 344458889999999999999888884 222 2234467999999999874
No 101
>PRK09401 reverse gyrase; Reviewed
Probab=99.18 E-value=2.2e-10 Score=100.85 Aligned_cols=104 Identities=16% Similarity=0.150 Sum_probs=85.0
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEeccHHH---HHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe--
Q psy13224 38 GKLQSLDVILRKLKAGGHRVLIFTQMTRM---LDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS-- 112 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~k~lif~~~~~~---~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~-- 112 (160)
.|...|.+++..+ +..+||||++... ++.+.+.|+..|+++..+||++ .+.+++|. ++...+++.+
T Consensus 315 ~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~-~G~~~VLVatas 385 (1176)
T PRK09401 315 DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFE-EGEVDVLVGVAS 385 (1176)
T ss_pred cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHH-CCCCCEEEEecC
Confidence 5777788887643 4689999998766 9999999999999999999999 22459997 4555656554
Q ss_pred -cccccccccccc-CCEEEEeCCCC------CcChhhHHHHHHHhc
Q psy13224 113 -TRSGGVGINLTG-ADTVVFYDSDW------NPTMDAQAQDRCHRI 150 (160)
Q Consensus 113 -~~~~~~Gldl~~-~~~vi~~~~~~------~~~~~~Q~~gR~~R~ 150 (160)
++++++|||+++ +++||||+.|. ....+.+++||+...
T Consensus 386 ~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 386 YYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred CCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 799999999998 89999999998 566778999998644
No 102
>PRK09694 helicase Cas3; Provisional
Probab=99.17 E-value=3.9e-10 Score=96.60 Aligned_cols=109 Identities=15% Similarity=0.117 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcC---CeEEEEECCCCHHHH----HHHHHHhccCCC--ceEEEE
Q psy13224 41 QSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHG---HIYLRLDGTTKVDQR----QVLMERFNMDAR--IFCFIL 111 (160)
Q Consensus 41 ~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~---~~~~~~~g~~~~~~r----~~~~~~f~~~~~--~~vll~ 111 (160)
..+..+++. ...|++++||+|+.+.+..+.+.|+..+ .++..+||..+..+| .++++.|..++. ...+|+
T Consensus 548 ~~l~~i~~~-~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILV 626 (878)
T PRK09694 548 TLLQRMIAA-ANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILV 626 (878)
T ss_pred HHHHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEE
Confidence 344444443 4567899999999999999999999764 678999999999998 457778832222 135889
Q ss_pred eccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCC
Q psy13224 112 STRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT 153 (160)
Q Consensus 112 ~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~ 153 (160)
+|+++.+|+|+ +++.+|....| ...++||+||++|.|..
T Consensus 627 aTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 627 ATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred ECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 99999999999 57888886655 45789999999999863
No 103
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.16 E-value=2.1e-10 Score=100.84 Aligned_cols=96 Identities=19% Similarity=0.219 Sum_probs=79.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhcCCe---EEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEE
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNFHGHI---YLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVV 129 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~~~~~---~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi 129 (160)
....+|||++....++.+.+.|+..+++ +..+||++++++|.++++.+ +..-+|++|+++++|++++++++||
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~----g~rkIIVATNIAEtSITIpgI~yVI 360 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH----SGRRIVLATNVAETSLTVPGIKYVI 360 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc----CCeeEEEeccHHhhccccCcceEEE
Confidence 3468999999999999999999987764 67899999999999887643 3455889999999999999999999
Q ss_pred EeC---------------CCCCc---ChhhHHHHHHHhcCC
Q psy13224 130 FYD---------------SDWNP---TMDAQAQDRCHRIGQ 152 (160)
Q Consensus 130 ~~~---------------~~~~~---~~~~Q~~gR~~R~gq 152 (160)
.++ ++..+ ..+.||.||++|.+.
T Consensus 361 D~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~ 401 (1294)
T PRK11131 361 DPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSE 401 (1294)
T ss_pred ECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCC
Confidence 985 23222 568899999999853
No 104
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.11 E-value=7.4e-10 Score=97.56 Aligned_cols=109 Identities=18% Similarity=0.222 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHhc-CCCeEEEEeccHHHHHHHHHHHHhcC---CeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecc
Q psy13224 39 KLQSLDVILRKLKA-GGHRVLIFTQMTRMLDVLEAFLNFHG---HIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTR 114 (160)
Q Consensus 39 K~~~l~~ll~~~~~-~~~k~lif~~~~~~~~~l~~~l~~~~---~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~ 114 (160)
+...+...+..+.. ..+.+|||++....++.+.+.|...+ +.+..+||+++.++|.++++.+ +.+-+|++|+
T Consensus 263 ~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~----~~rkIVLATN 338 (1283)
T TIGR01967 263 QLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH----SGRRIVLATN 338 (1283)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC----CCceEEEecc
Confidence 44555555655443 34699999999999999999999764 4578899999999999885443 2345888999
Q ss_pred ccccccccccCCEEEEeCCCC------------------CcChhhHHHHHHHhcC
Q psy13224 115 SGGVGINLTGADTVVFYDSDW------------------NPTMDAQAQDRCHRIG 151 (160)
Q Consensus 115 ~~~~Gldl~~~~~vi~~~~~~------------------~~~~~~Q~~gR~~R~g 151 (160)
++++|++++++.+||.++.+. +...+.||.||++|.|
T Consensus 339 IAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~ 393 (1283)
T TIGR01967 339 VAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA 393 (1283)
T ss_pred HHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC
Confidence 999999999999999987432 3346789999999998
No 105
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.01 E-value=3.4e-09 Score=93.61 Aligned_cols=90 Identities=20% Similarity=0.237 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeccH---HHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe---c
Q psy13224 40 LQSLDVILRKLKAGGHRVLIFTQMT---RMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS---T 113 (160)
Q Consensus 40 ~~~l~~ll~~~~~~~~k~lif~~~~---~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~---~ 113 (160)
...|.++++.+ +.+.|||+++. +.++.+...|+..|+++..+||+.+. ..+++|+ .+...+++.+ +
T Consensus 315 ~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr-~G~~~vLVata~~t 386 (1171)
T TIGR01054 315 KETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFA-EGEIDVLIGVASYY 386 (1171)
T ss_pred HHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHH-cCCCCEEEEecccc
Confidence 45666676543 56899999998 88999999999999999999999873 6889997 4555655554 6
Q ss_pred ccccccccccc-CCEEEEeCCCCCc
Q psy13224 114 RSGGVGINLTG-ADTVVFYDSDWNP 137 (160)
Q Consensus 114 ~~~~~Gldl~~-~~~vi~~~~~~~~ 137 (160)
+++++|||+++ +++||||++|...
T Consensus 387 dv~aRGIDip~~V~~vI~~~~P~~~ 411 (1171)
T TIGR01054 387 GTLVRGLDLPERVRYAVFLGVPKFK 411 (1171)
T ss_pred CcccccCCCCccccEEEEECCCCEE
Confidence 99999999998 8999999998753
No 106
>PRK14701 reverse gyrase; Provisional
Probab=99.01 E-value=1.9e-09 Score=97.32 Aligned_cols=103 Identities=17% Similarity=0.251 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhcCCCeEEEEeccHHH---HHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEec----
Q psy13224 41 QSLDVILRKLKAGGHRVLIFTQMTRM---LDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILST---- 113 (160)
Q Consensus 41 ~~l~~ll~~~~~~~~k~lif~~~~~~---~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~---- 113 (160)
..+.++++. .+...||||++... ++.+.+.|...|+++..+||+ |...+++|. .+... +|++|
T Consensus 320 ~~L~~ll~~---~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~-~G~~~-VLVaT~s~~ 389 (1638)
T PRK14701 320 EHVRELLKK---LGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFE-EGEID-YLIGVATYY 389 (1638)
T ss_pred HHHHHHHHh---CCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHH-cCCCC-EEEEecCCC
Confidence 456666654 35789999998764 589999999999999999994 889999997 44444 55555
Q ss_pred ccccccccccc-CCEEEEeCCCC---CcChhhHHH-------------HHHHhcCCC
Q psy13224 114 RSGGVGINLTG-ADTVVFYDSDW---NPTMDAQAQ-------------DRCHRIGQT 153 (160)
Q Consensus 114 ~~~~~Gldl~~-~~~vi~~~~~~---~~~~~~Q~~-------------gR~~R~gq~ 153 (160)
+++++|||+|+ +.+|||++.|. +...+.|.. ||++|.|..
T Consensus 390 gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 390 GTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred CeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 68999999997 99999999999 666666655 888888864
No 107
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.96 E-value=7.7e-10 Score=89.45 Aligned_cols=114 Identities=15% Similarity=0.173 Sum_probs=93.7
Q ss_pred cCchHHHHHHHHHHHhcC----C--CeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEE
Q psy13224 36 DCGKLQSLDVILRKLKAG----G--HRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCF 109 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~----~--~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vl 109 (160)
.+.|.+.+.++++.-... | .+.|||+++...++.|++.|...|++...+|++++..+|..+-..|.+ +.--.
T Consensus 416 e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~--q~l~~ 493 (830)
T COG1202 416 ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAA--QELAA 493 (830)
T ss_pred chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhc--CCcce
Confidence 467999999999755321 2 399999999999999999999999999999999999999999999963 33347
Q ss_pred EEeccccccccccccCCEEEEeC-----CCCCcChhhHHHHHHHhcCC
Q psy13224 110 ILSTRSGGVGINLTGADTVVFYD-----SDWNPTMDAQAQDRCHRIGQ 152 (160)
Q Consensus 110 l~~~~~~~~Gldl~~~~~vi~~~-----~~~~~~~~~Q~~gR~~R~gq 152 (160)
+++|.+.+.|+|+|. +.|||=. -+.++..+.|-.||++|.+=
T Consensus 494 VVTTAAL~AGVDFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~y 540 (830)
T COG1202 494 VVTTAALAAGVDFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDY 540 (830)
T ss_pred EeehhhhhcCCCCch-HHHHHHHHHcccccCCHHHHHHHhcccCCCCc
Confidence 778899999999985 4444422 35578889999999999873
No 108
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.95 E-value=5.5e-09 Score=85.31 Aligned_cols=90 Identities=20% Similarity=0.200 Sum_probs=70.7
Q ss_pred HHHHHHHHHhc--CCeEEEEECCCCHHHH--HHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCCCC--C----
Q psy13224 67 LDVLEAFLNFH--GHIYLRLDGTTKVDQR--QVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDW--N---- 136 (160)
Q Consensus 67 ~~~l~~~l~~~--~~~~~~~~g~~~~~~r--~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~--~---- 136 (160)
.+.+++.|++. +.++..+|++.+..++ ...++.|.+ +..-+|+.|++.+.|+|+++++.|+.++.+. +
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~--g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ 348 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFAN--GKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDF 348 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhc--CCCCEEEeCcccccCCCCCcccEEEEEcCcccccCccc
Confidence 46777888776 7889999998876655 889999963 3344888999999999999999997665442 2
Q ss_pred ------cChhhHHHHHHHhcCCCCceEE
Q psy13224 137 ------PTMDAQAQDRCHRIGQTRDVHI 158 (160)
Q Consensus 137 ------~~~~~Q~~gR~~R~gq~~~v~i 158 (160)
...+.|+.||++|.+....|.|
T Consensus 349 ra~E~~~~ll~q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 349 RAAERGFQLLTQVAGRAGRAEDPGQVII 376 (505)
T ss_pred chHHHHHHHHHHHHhccCCCCCCCEEEE
Confidence 2457899999999888777764
No 109
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.87 E-value=3.3e-08 Score=83.84 Aligned_cols=122 Identities=15% Similarity=0.164 Sum_probs=98.1
Q ss_pred cccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEec
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILST 113 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~ 113 (160)
.+...|..++.+-+....+.|..+||.|.+.+..+.|...|...|+++-++++.....|- .++. - .+..-.+-++|
T Consensus 406 ~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~EA-~IIa-~--AG~~GaVTIAT 481 (925)
T PRK12903 406 GTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREA-EIIA-K--AGQKGAITIAT 481 (925)
T ss_pred EcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhHH-HHHH-h--CCCCCeEEEec
Confidence 334578888888887777889999999999999999999999999999999997553332 2332 1 23334477789
Q ss_pred cccccccccccCC--------EEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 114 RSGGVGINLTGAD--------TVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 114 ~~~~~Gldl~~~~--------~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
.++|||.|+.-.. |||..+.+-|.....|..||++|.|.......|
T Consensus 482 NMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 482 NMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred ccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 9999999987433 999999999999999999999999988776544
No 110
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=98.81 E-value=7.8e-08 Score=79.38 Aligned_cols=119 Identities=15% Similarity=0.138 Sum_probs=92.7
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHH--------HHHHHHHHHhc--CCeEEEEECCCCHHHHHHHHHHhccCCCc
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRM--------LDVLEAFLNFH--GHIYLRLDGTTKVDQRQVLMERFNMDARI 106 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~--------~~~l~~~l~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ 106 (160)
..+...+.+.++.-...|+++-+.|.-.+. +..+.+.|+.. ++++..+||.+++++++.++..|++.+..
T Consensus 456 ~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ 535 (677)
T COG1200 456 HERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEID 535 (677)
T ss_pred cccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCc
Confidence 356666677776666789999999976553 33445555532 67789999999999999999999744434
Q ss_pred eEEEEeccccccccccccCCEEEEeCCC-CCcChhhHHHHHHHhcCCCCceE
Q psy13224 107 FCFILSTRSGGVGINLTGADTVVFYDSD-WNPTMDAQAQDRCHRIGQTRDVH 157 (160)
Q Consensus 107 ~vll~~~~~~~~Gldl~~~~~vi~~~~~-~~~~~~~Q~~gR~~R~gq~~~v~ 157 (160)
+|++|-+..-|+|+|+++-+|..++. +-.+.+-|--||++|-+.+.-|.
T Consensus 536 --ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~ 585 (677)
T COG1200 536 --ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCV 585 (677)
T ss_pred --EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEE
Confidence 89999999999999999999999964 44566679999999987666554
No 111
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.80 E-value=1.1e-07 Score=79.63 Aligned_cols=120 Identities=17% Similarity=0.208 Sum_probs=97.6
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccc
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~ 115 (160)
...|..++.+-+....+.|..|||.+.+.+..+.|...|.+.|+++-++++.....| ..++.+- +..-.+-++|..
T Consensus 409 ~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~E-A~IIa~A---G~~gaVTIATNM 484 (764)
T PRK12326 409 AAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEE-ARIIAEA---GKYGAVTVSTQM 484 (764)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhH-HHHHHhc---CCCCcEEEEecC
Confidence 346888877777777788999999999999999999999999999999998866443 3344332 333337788999
Q ss_pred cccccccc---------------cCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 116 GGVGINLT---------------GADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 116 ~~~Gldl~---------------~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+|||.|+. +.=+||-.+.+-|.....|..||++|.|.......|
T Consensus 485 AGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 485 AGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred CCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 99999986 445899999999999999999999999988776554
No 112
>KOG0953|consensus
Probab=98.78 E-value=3.6e-08 Score=79.55 Aligned_cols=99 Identities=18% Similarity=0.261 Sum_probs=80.4
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEE
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVF 130 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~ 130 (160)
..|.-++-|+. ...-.+...++++|.. +++|+|+++++.|..-...||++.+..-+|+++|+.|.|||+ ++++|||
T Consensus 356 k~GDCvV~FSk--k~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF 432 (700)
T KOG0953|consen 356 KPGDCVVAFSK--KDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIF 432 (700)
T ss_pred CCCCeEEEeeh--hhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEE
Confidence 45678888875 4556778888888766 999999999999999999999777777789999999999996 6889999
Q ss_pred eCCCC---------CcChhhHHHHHHHhcCCC
Q psy13224 131 YDSDW---------NPTMDAQAQDRCHRIGQT 153 (160)
Q Consensus 131 ~~~~~---------~~~~~~Q~~gR~~R~gq~ 153 (160)
++... ......|-.||++|+|..
T Consensus 433 ~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 433 YSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred eecccCCcccceeccHHHHHHHhhcccccccC
Confidence 98752 233445999999999854
No 113
>KOG0353|consensus
Probab=98.78 E-value=1.9e-08 Score=78.17 Aligned_cols=104 Identities=15% Similarity=0.122 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHhcC--CCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 39 KLQSLDVILRKLKAG--GHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 39 K~~~l~~ll~~~~~~--~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
-.+.+.++.+.+... |..-||||-+...++.+...|+.+|+..-.+|..+.+.+|...-+.|. .+...+++.+-+.
T Consensus 300 ~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~--a~eiqvivatvaf 377 (695)
T KOG0353|consen 300 EDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWI--AGEIQVIVATVAF 377 (695)
T ss_pred hHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccc--ccceEEEEEEeee
Confidence 344555555554433 668999999999999999999999999999999999999999999994 4445577788999
Q ss_pred ccccccccCCEEEEeCCCCCcChhhHHH
Q psy13224 117 GVGINLTGADTVVFYDSDWNPTMDAQAQ 144 (160)
Q Consensus 117 ~~Gldl~~~~~vi~~~~~~~~~~~~Q~~ 144 (160)
+.|+|-|++..||+-..|.+...|.|+.
T Consensus 378 gmgidkpdvrfvihhsl~ksienyyqas 405 (695)
T KOG0353|consen 378 GMGIDKPDVRFVIHHSLPKSIENYYQAS 405 (695)
T ss_pred cccCCCCCeeEEEecccchhHHHHHHHH
Confidence 9999999999999999999999999943
No 114
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.77 E-value=1.8e-07 Score=75.40 Aligned_cols=112 Identities=20% Similarity=0.202 Sum_probs=93.8
Q ss_pred HHHHHHHHHHH---hcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 40 LQSLDVILRKL---KAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 40 ~~~l~~ll~~~---~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
...+.+++.++ .+.+++++|=+=+..+++.|.++|...|+++..+|+....-+|.+++.+.+ .+..-+|+..+..
T Consensus 429 ~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR--~G~~DvLVGINLL 506 (663)
T COG0556 429 KGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLR--LGEFDVLVGINLL 506 (663)
T ss_pred CCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHh--cCCccEEEeehhh
Confidence 33444444444 456789999999999999999999999999999999999999999999996 4444477888999
Q ss_pred ccccccccCCEEEEeCCC-----CCcChhhHHHHHHHhcCCC
Q psy13224 117 GVGINLTGADTVVFYDSD-----WNPTMDAQAQDRCHRIGQT 153 (160)
Q Consensus 117 ~~Gldl~~~~~vi~~~~~-----~~~~~~~Q~~gR~~R~gq~ 153 (160)
.+|||+|.++-|-.+|-+ .+-..++|.+||+.|--..
T Consensus 507 REGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~G 548 (663)
T COG0556 507 REGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 (663)
T ss_pred hccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCC
Confidence 999999999999999964 4566789999999996543
No 115
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.77 E-value=9.8e-08 Score=80.62 Aligned_cols=90 Identities=21% Similarity=0.192 Sum_probs=71.1
Q ss_pred HHHHHHHHHhc--CCeEEEEECCCC--HHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCCCC--Cc---
Q psy13224 67 LDVLEAFLNFH--GHIYLRLDGTTK--VDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDW--NP--- 137 (160)
Q Consensus 67 ~~~l~~~l~~~--~~~~~~~~g~~~--~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~--~~--- 137 (160)
.+.+++.|++. +.++..+|+.+. ..++++.++.|.+ +..-+|++|+++++|+|+++++.|+.++.+. +.
T Consensus 439 ~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~--g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdf 516 (679)
T PRK05580 439 TERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFAR--GEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDF 516 (679)
T ss_pred HHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhc--CCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCcc
Confidence 45777788775 788999999876 4678999999963 3334888999999999999999998776542 22
Q ss_pred -------ChhhHHHHHHHhcCCCCceEE
Q psy13224 138 -------TMDAQAQDRCHRIGQTRDVHI 158 (160)
Q Consensus 138 -------~~~~Q~~gR~~R~gq~~~v~i 158 (160)
..+.|+.||++|.+....|.|
T Consensus 517 ra~Er~~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 517 RASERTFQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred chHHHHHHHHHHHHhhccCCCCCCEEEE
Confidence 457899999999887777765
No 116
>KOG1123|consensus
Probab=98.76 E-value=1.6e-07 Score=75.25 Aligned_cols=112 Identities=19% Similarity=0.324 Sum_probs=88.1
Q ss_pred cccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEec
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILST 113 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~ 113 (160)
.....|+++..=|++.....|.|+|||++..-.+...+-.| +-+ .|+|.+++.+|-++++.|..++...-+++|
T Consensus 523 vMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl---~Kp--fIYG~Tsq~ERm~ILqnFq~n~~vNTIFlS- 596 (776)
T KOG1123|consen 523 VMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKL---GKP--FIYGPTSQNERMKILQNFQTNPKVNTIFLS- 596 (776)
T ss_pred ecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHc---CCc--eEECCCchhHHHHHHHhcccCCccceEEEe-
Confidence 33567999988888887778999999998766554444443 333 489999999999999999866665545554
Q ss_pred cccccccccccCCEEEEeCCCCCc-ChhhHHHHHHHhcC
Q psy13224 114 RSGGVGINLTGADTVVFYDSDWNP-TMDAQAQDRCHRIG 151 (160)
Q Consensus 114 ~~~~~Gldl~~~~~vi~~~~~~~~-~~~~Q~~gR~~R~g 151 (160)
+++.+.+|+|.++-+|..+..... ..+.||.||+.|.-
T Consensus 597 KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 597 KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 999999999999999999876654 45679999999964
No 117
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.76 E-value=9.5e-08 Score=81.35 Aligned_cols=111 Identities=15% Similarity=0.176 Sum_probs=86.5
Q ss_pred HHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhcc--CCCceEEEEeccccccccccc
Q psy13224 46 ILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNM--DARIFCFILSTRSGGVGINLT 123 (160)
Q Consensus 46 ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~--~~~~~vll~~~~~~~~Gldl~ 123 (160)
.+......+.+++|.+|+...+..+.+.|+..+.++..+|+.....+|.+....... +.....++++|++...|+|+.
T Consensus 432 ~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid 511 (733)
T COG1203 432 LISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID 511 (733)
T ss_pred cchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc
Confidence 333335678899999999999999999999998889999999999999888875542 233445888999999999987
Q ss_pred cCCEEEEeCCCCCcChhhHHHHHHHhcC--CCCceEEe
Q psy13224 124 GADTVVFYDSDWNPTMDAQAQDRCHRIG--QTRDVHIY 159 (160)
Q Consensus 124 ~~~~vi~~~~~~~~~~~~Q~~gR~~R~g--q~~~v~i~ 159 (160)
.+.+| .+ .......+||.||++|.| ....+.+|
T Consensus 512 -fd~mI-Te-~aPidSLIQR~GRv~R~g~~~~~~~~v~ 546 (733)
T COG1203 512 -FDVLI-TE-LAPIDSLIQRAGRVNRHGKKENGKIYVY 546 (733)
T ss_pred -cCeee-ec-CCCHHHHHHHHHHHhhcccccCCceeEe
Confidence 44443 33 334556789999999999 55556665
No 118
>KOG0383|consensus
Probab=98.70 E-value=7.4e-09 Score=86.14 Aligned_cols=107 Identities=43% Similarity=0.737 Sum_probs=88.7
Q ss_pred cchhccchhhhhhhcCCCCcc-----ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEEC
Q psy13224 12 KLRLLHPVTSAMCTQFPDPRL-----IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDG 86 (160)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g 86 (160)
+-.++||+++....+.....- +...++|+..|..+++++.+.|++|+||+++..+.|.+++.++..+ .+..++|
T Consensus 584 ~K~~~hpy~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG 662 (696)
T KOG0383|consen 584 RKQCNHPYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDG 662 (696)
T ss_pred HHhhcCcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccC
Confidence 345688888766332221111 2335889999999999999999999999999999999999999999 9999999
Q ss_pred CCCHHHHHHHHHHhccC-CCceEEEEeccccccc
Q psy13224 87 TTKVDQRQVLMERFNMD-ARIFCFILSTRSGGVG 119 (160)
Q Consensus 87 ~~~~~~r~~~~~~f~~~-~~~~vll~~~~~~~~G 119 (160)
..+..+|+..++.|+.+ +...|+|+||.++|.|
T Consensus 663 ~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 663 PITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred CccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99999999999999954 5578899999999876
No 119
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.57 E-value=5.8e-07 Score=76.87 Aligned_cols=122 Identities=17% Similarity=0.198 Sum_probs=98.3
Q ss_pred cccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEec
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILST 113 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~ 113 (160)
.+...|..++.+-+..+.+.|..|||-+.+.+..+.|+.+|...|+++-+++......| ..++.. .+..-.+-++|
T Consensus 429 ~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~E-A~IIa~---AG~~GaVTIAT 504 (913)
T PRK13103 429 LTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKE-AEIIAQ---AGRPGALTIAT 504 (913)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccchhH-HHHHHc---CCCCCcEEEec
Confidence 33457888888888888888999999999999999999999999999999988765333 233332 23333377789
Q ss_pred cccccccccc-------------------------------------cCCEEEEeCCCCCcChhhHHHHHHHhcCCCCce
Q psy13224 114 RSGGVGINLT-------------------------------------GADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 156 (160)
Q Consensus 114 ~~~~~Gldl~-------------------------------------~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v 156 (160)
..+|||.|+. +.=+||-.+.+-|.....|..||++|.|.....
T Consensus 505 NMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS 584 (913)
T PRK13103 505 NMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSS 584 (913)
T ss_pred cCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 9999999985 445899999999999999999999999988776
Q ss_pred EEe
Q psy13224 157 HIY 159 (160)
Q Consensus 157 ~i~ 159 (160)
..|
T Consensus 585 ~f~ 587 (913)
T PRK13103 585 RFY 587 (913)
T ss_pred EEE
Confidence 544
No 120
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.53 E-value=6.7e-07 Score=77.17 Aligned_cols=120 Identities=16% Similarity=0.212 Sum_probs=97.8
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccc
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~ 115 (160)
...|..++.+-+..+.+.|..|||-+.+.+.-+.|+++|...|+++-+++......|- .++..= +..-.+-++|..
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EA-eIVA~A---G~~GaVTIATNM 685 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEA-EIVAEA---GQPGTVTIATNM 685 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHH-HHHHhc---CCCCcEEEeccC
Confidence 3578888888888888899999999999999999999999999999999887654433 333322 222337778999
Q ss_pred cccccccc--------cCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 116 GGVGINLT--------GADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 116 ~~~Gldl~--------~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+|||.|+. +.=+||-.+.+-|.....|..||++|.|.......|
T Consensus 686 AGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 686 AGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred cCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 99999987 667999999999999999999999999987765443
No 121
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.53 E-value=1.3e-06 Score=74.99 Aligned_cols=120 Identities=16% Similarity=0.264 Sum_probs=96.5
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccc
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~ 115 (160)
...|..++.+-+....+.|..+||-+.+.+..+.+...|...|+++.+++......|- .++..- +..-.+.++|..
T Consensus 550 ~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea-~iia~A---G~~g~VTIATNm 625 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEA-EIIAGA---GKLGAVTVATNM 625 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHH-HHHHhc---CCCCcEEEeecc
Confidence 3478888888777777889999999999999999999999999999999997554332 333322 333347788999
Q ss_pred cccccccc--------cCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 116 GGVGINLT--------GADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 116 ~~~Gldl~--------~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+|||.|+. +.=+||....+-|.....|..||++|.|.......|
T Consensus 626 AGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~ 677 (970)
T PRK12899 626 AGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF 677 (970)
T ss_pred ccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE
Confidence 99999975 344899999999999999999999999988775544
No 122
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.52 E-value=1.5e-06 Score=75.67 Aligned_cols=108 Identities=17% Similarity=0.174 Sum_probs=86.6
Q ss_pred HHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc--CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccc
Q psy13224 46 ILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLT 123 (160)
Q Consensus 46 ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~ 123 (160)
+++++ ..|+++..-++..+....+.+.|+.. ...+++.||.++..+-+.++.+|.+ +..-+|+||-....|+|+|
T Consensus 796 I~REl-~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~--g~~dVLv~TTIIEtGIDIP 872 (1139)
T COG1197 796 ILREL-LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYN--GEYDVLVCTTIIETGIDIP 872 (1139)
T ss_pred HHHHH-hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHc--CCCCEEEEeeeeecCcCCC
Confidence 44444 45678888888888888888888875 6678999999999999999999974 3344788888899999999
Q ss_pred cCCEEEEeCC-CCCcChhhHHHHHHHhcCCCCce
Q psy13224 124 GADTVVFYDS-DWNPTMDAQAQDRCHRIGQTRDV 156 (160)
Q Consensus 124 ~~~~vi~~~~-~~~~~~~~Q~~gR~~R~gq~~~v 156 (160)
+||++|.-+- -+..+.+.|--||++|-.++.=+
T Consensus 873 nANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYA 906 (1139)
T COG1197 873 NANTIIIERADKFGLAQLYQLRGRVGRSNKQAYA 906 (1139)
T ss_pred CCceEEEeccccccHHHHHHhccccCCccceEEE
Confidence 9999998774 45567788999999997765433
No 123
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.49 E-value=3.7e-06 Score=64.73 Aligned_cols=114 Identities=20% Similarity=0.249 Sum_probs=89.4
Q ss_pred HHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc--CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccc
Q psy13224 42 SLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVG 119 (160)
Q Consensus 42 ~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~G 119 (160)
+|...|++....+..++||.+..+.++.++..|+.. ....+..|+.. ..|.+.+..|++ +..-+|++|....+|
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~--G~~~lLiTTTILERG 368 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRD--GKITLLITTTILERG 368 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHc--CceEEEEEeehhhcc
Confidence 678889888888999999999999999999999543 23334555543 368889999963 334488899999999
Q ss_pred cccccCCEEEEeCCC--CCcChhhHHHHHHHhcC--CCCceEEe
Q psy13224 120 INLTGADTVVFYDSD--WNPTMDAQAQDRCHRIG--QTRDVHIY 159 (160)
Q Consensus 120 ldl~~~~~vi~~~~~--~~~~~~~Q~~gR~~R~g--q~~~v~i~ 159 (160)
+.+++++..++-.-. ++-+.+.|-.||++|.- .+.+|..|
T Consensus 369 VTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 369 VTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred cccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 999999999988755 77888899999999964 35555543
No 124
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.40 E-value=6.8e-06 Score=70.19 Aligned_cols=85 Identities=15% Similarity=0.166 Sum_probs=65.7
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHH-HHHHHHhccCCCceEEEEecc
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQR-QVLMERFNMDARIFCFILSTR 114 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r-~~~~~~f~~~~~~~vll~~~~ 114 (160)
...|..++.+-+....+.|..|||-+.+.+..+.++..|...|+++-++++.....++ ..++.+= +..-.+-++|.
T Consensus 406 ~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~A---G~~G~VTIATN 482 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQA---GRKGSITIATN 482 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhc---CCCCcEEEecc
Confidence 3468887777777777889999999999999999999999999999999997533233 3344332 33333778899
Q ss_pred ccccccccc
Q psy13224 115 SGGVGINLT 123 (160)
Q Consensus 115 ~~~~Gldl~ 123 (160)
.+|||.|+.
T Consensus 483 MAGRGTDI~ 491 (870)
T CHL00122 483 MAGRGTDII 491 (870)
T ss_pred ccCCCcCee
Confidence 999999875
No 125
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.36 E-value=1.9e-06 Score=74.38 Aligned_cols=116 Identities=19% Similarity=0.219 Sum_probs=98.5
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHH----HHHHhcC----CeEEEEECCCCHHHHHHHHHHhccCCCceEE
Q psy13224 38 GKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLE----AFLNFHG----HIYLRLDGTTKVDQRQVLMERFNMDARIFCF 109 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~----~~l~~~~----~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vl 109 (160)
++...+..++..+...+-+.|+|+.+...+..+. ..+...+ .......|++...+|.++...|. .+.-..
T Consensus 290 s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~--~g~~~~ 367 (851)
T COG1205 290 SALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFK--EGELLG 367 (851)
T ss_pred chHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHh--cCCccE
Confidence 6778888888888888999999999999888775 4444445 56788999999999999999995 444448
Q ss_pred EEeccccccccccccCCEEEEeCCCC-CcChhhHHHHHHHhcCCCCc
Q psy13224 110 ILSTRSGGVGINLTGADTVVFYDSDW-NPTMDAQAQDRCHRIGQTRD 155 (160)
Q Consensus 110 l~~~~~~~~Gldl~~~~~vi~~~~~~-~~~~~~Q~~gR~~R~gq~~~ 155 (160)
++++.++.-|+|+..++.||...-|- +...+.|+.||++|.+|.-.
T Consensus 368 ~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l 414 (851)
T COG1205 368 VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESL 414 (851)
T ss_pred EecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCce
Confidence 88999999999999999999999888 77889999999999996554
No 126
>KOG0329|consensus
Probab=98.28 E-value=5.9e-07 Score=66.60 Aligned_cols=81 Identities=22% Similarity=0.292 Sum_probs=64.1
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccc
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~ 115 (160)
+..|..++.++|+.+- =.+++||..+... | . | ..+ +++++.
T Consensus 267 e~eKNrkl~dLLd~Le--FNQVvIFvKsv~R-------l-----------------------~-f----~kr--~vat~l 307 (387)
T KOG0329|consen 267 ENEKNRKLNDLLDVLE--FNQVVIFVKSVQR-------L-----------------------S-F----QKR--LVATDL 307 (387)
T ss_pred hhhhhhhhhhhhhhhh--hcceeEeeehhhh-------h-----------------------h-h----hhh--hHHhhh
Confidence 4568888888887652 2489999876553 0 0 3 112 667899
Q ss_pred cccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCc
Q psy13224 116 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRD 155 (160)
Q Consensus 116 ~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~ 155 (160)
.++|+|+.+++-+++||.|-++..|.++++|++|+|.+.-
T Consensus 308 fgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkgl 347 (387)
T KOG0329|consen 308 FGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 347 (387)
T ss_pred hccccCcccceeeeccCCCCCchHHHHHhhhhhccccccc
Confidence 9999999999999999999999999999999999996543
No 127
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.24 E-value=2.6e-05 Score=66.04 Aligned_cols=100 Identities=14% Similarity=0.071 Sum_probs=75.4
Q ss_pred CCeEEEEeccHHHHHHHHHHHHhc-----CCeEEEEECCCCHH---------------------HHHHHHHHhccCCCce
Q psy13224 54 GHRVLIFTQMTRMLDVLEAFLNFH-----GHIYLRLDGTTKVD---------------------QRQVLMERFNMDARIF 107 (160)
Q Consensus 54 ~~k~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~g~~~~~---------------------~r~~~~~~f~~~~~~~ 107 (160)
+.|.+|||.+...+..+.+.|.+. +...++++++.+.+ ....++++|.+.+...
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 479999999999998888887654 34556777754432 1246888897443444
Q ss_pred EEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhc-CCCCc
Q psy13224 108 CFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRI-GQTRD 155 (160)
Q Consensus 108 vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~-gq~~~ 155 (160)
+|+.++...+|.|.|.++++++.-|..+.. +.|++||+.|. +..|+
T Consensus 594 -ilIVvdmllTGFDaP~l~tLyldKplk~h~-LlQai~R~nR~~~~~K~ 640 (667)
T TIGR00348 594 -LLIVVDMLLTGFDAPILNTLYLDKPLKYHG-LLQAIARTNRIDGKDKT 640 (667)
T ss_pred -EEEEEcccccccCCCccceEEEeccccccH-HHHHHHHhccccCCCCC
Confidence 556669999999999999999999988765 68999999994 54443
No 128
>KOG4150|consensus
Probab=98.20 E-value=5e-06 Score=67.94 Aligned_cols=114 Identities=14% Similarity=0.186 Sum_probs=93.3
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHH----hcCC----eEEEEECCCCHHHHHHHHHHhccCCCceE
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLN----FHGH----IYLRLDGTTKVDQRQVLMERFNMDARIFC 108 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~----~~~~----~~~~~~g~~~~~~r~~~~~~f~~~~~~~v 108 (160)
+.|......++..+...+-+.|-||.....++.+..... +.+- .+..+.|+...++|.++-.+. -++.-+
T Consensus 508 ~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~--F~G~L~ 585 (1034)
T KOG4150|consen 508 SSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDL--FGGKLC 585 (1034)
T ss_pred hhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHh--hCCeee
Confidence 567777888888887788899999998887776654332 2111 245788999999999998887 456666
Q ss_pred EEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCC
Q psy13224 109 FILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQ 152 (160)
Q Consensus 109 ll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq 152 (160)
-+++|.+...|+|+.+.+-|+....|.+.+.+.|..||++|-+.
T Consensus 586 giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 586 GIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred EEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCC
Confidence 88899999999999999999999999999999999999998664
No 129
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.17 E-value=3.8e-06 Score=63.43 Aligned_cols=59 Identities=22% Similarity=0.322 Sum_probs=46.2
Q ss_pred HHHHHhccCCCceEEEEecccccccccccc--------CCEEEEeCCCCCcChhhHHHHHHHhcCCCCc
Q psy13224 95 VLMERFNMDARIFCFILSTRSGGVGINLTG--------ADTVVFYDSDWNPTMDAQAQDRCHRIGQTRD 155 (160)
Q Consensus 95 ~~~~~f~~~~~~~vll~~~~~~~~Gldl~~--------~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~ 155 (160)
...+.|. ++...++|+ ++++++|++++. -..-|.+++||+....+|..||+||-||..+
T Consensus 52 ~e~~~F~-~g~k~v~ii-s~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~ 118 (278)
T PF13871_consen 52 AEKQAFM-DGEKDVAII-SDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSA 118 (278)
T ss_pred HHHHHHh-CCCceEEEE-ecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccC
Confidence 5667887 344555555 599999999873 2345688999999999999999999999554
No 130
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.14 E-value=1.3e-05 Score=67.69 Aligned_cols=94 Identities=15% Similarity=0.214 Sum_probs=80.0
Q ss_pred CeEEEEeccHHHHHHHHHHHHhc-----CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEE
Q psy13224 55 HRVLIFTQMTRMLDVLEAFLNFH-----GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVV 129 (160)
Q Consensus 55 ~k~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi 129 (160)
.|.||||....+++.+...|... +--+..|+|+.... ...++.|..++....|.++.+.+.+|+|.+.+..++
T Consensus 427 ~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlV 504 (875)
T COG4096 427 GKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLV 504 (875)
T ss_pred CceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeee
Confidence 49999999999999999999864 33356777776643 456777776677777889999999999999999999
Q ss_pred EeCCCCCcChhhHHHHHHHhc
Q psy13224 130 FYDSDWNPTMDAQAQDRCHRI 150 (160)
Q Consensus 130 ~~~~~~~~~~~~Q~~gR~~R~ 150 (160)
|+.+..|...+.|-+||.-|.
T Consensus 505 F~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 505 FDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred ehhhhhhHHHHHHHhcCcccc
Confidence 999999999999999999885
No 131
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.12 E-value=9.1e-06 Score=69.45 Aligned_cols=111 Identities=16% Similarity=0.126 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHh----c---------------------------------CCeE
Q psy13224 39 KLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNF----H---------------------------------GHIY 81 (160)
Q Consensus 39 K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~----~---------------------------------~~~~ 81 (160)
+.+...+++....+.++++|||+++.......+..+.. . ...+
T Consensus 238 ~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gv 317 (766)
T COG1204 238 IDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGV 317 (766)
T ss_pred chHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCc
Confidence 34566666666677889999999988866555555541 0 0114
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCCCCC---------cChhhHHHHHHHhcC
Q psy13224 82 LRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWN---------PTMDAQAQDRCHRIG 151 (160)
Q Consensus 82 ~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~---------~~~~~Q~~gR~~R~g 151 (160)
+.-|++++.++|.-+-+.|+ .+..-+|++|...+.|+|+|.-..||----.|+ .-.+.|-.||++|.|
T Consensus 318 afHhAGL~~~~R~~vE~~Fr--~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg 394 (766)
T COG1204 318 AFHHAGLPREDRQLVEDAFR--KGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPG 394 (766)
T ss_pred cccccCCCHHHHHHHHHHHh--cCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCC
Confidence 56788999999999999996 344448888999999999996665553222333 445679999999988
No 132
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.96 E-value=0.00013 Score=63.48 Aligned_cols=111 Identities=21% Similarity=0.215 Sum_probs=74.5
Q ss_pred HHHHHHHHHhc-CCCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 42 SLDVILRKLKA-GGHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 42 ~l~~ll~~~~~-~~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
.+.+.+..+.. .++++|||+++...++.+...|.. .++. .+..+.. .+|.++++.|.. +...+|+++++.
T Consensus 661 ~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~--~~~~iLlgt~sf 735 (850)
T TIGR01407 661 EIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNN--GEKAILLGTSSF 735 (850)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHh--CCCeEEEEccee
Confidence 44444444433 456899999999999999999875 2443 2333333 478889999964 333366678999
Q ss_pred ccccccccCC--EEEEeCCCCCc-C-----------------------------hhhHHHHHHHhcCCCCceE
Q psy13224 117 GVGINLTGAD--TVVFYDSDWNP-T-----------------------------MDAQAQDRCHRIGQTRDVH 157 (160)
Q Consensus 117 ~~Gldl~~~~--~vi~~~~~~~~-~-----------------------------~~~Q~~gR~~R~gq~~~v~ 157 (160)
.+|+|+++.. .||....|+.+ . .+.|++||+.|-.+.+.+.
T Consensus 736 ~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v 808 (850)
T TIGR01407 736 WEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSI 808 (850)
T ss_pred ecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEE
Confidence 9999998544 66677766542 1 1248888888877666543
No 133
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.94 E-value=4.4e-05 Score=53.72 Aligned_cols=82 Identities=21% Similarity=0.149 Sum_probs=53.5
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCC--eEEEEECCCCHHHHHHHHHHhccCCCceEEEEecc--ccccccccc--cC
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGH--IYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTR--SGGVGINLT--GA 125 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~--~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~--~~~~Gldl~--~~ 125 (160)
..++.++||+++-..++.+.+.+..... ...++.. +..++...++.|... ...+|+++. ...+|+|++ .+
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~--~~~il~~v~~g~~~EGiD~~~~~~ 82 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRG--EGAILLAVAGGSFSEGIDFPGDLL 82 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCS--SSEEEEEETTSCCGSSS--ECESE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhc--cCeEEEEEecccEEEeecCCCchh
Confidence 4567999999999999999998886531 1122332 356788899999743 333666666 889999998 58
Q ss_pred CEEEEeCCCCCc
Q psy13224 126 DTVVFYDSDWNP 137 (160)
Q Consensus 126 ~~vi~~~~~~~~ 137 (160)
..+|....|+.+
T Consensus 83 r~vii~glPfp~ 94 (167)
T PF13307_consen 83 RAVIIVGLPFPP 94 (167)
T ss_dssp EEEEEES-----
T ss_pred heeeecCCCCCC
Confidence 899999988753
No 134
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.88 E-value=9.5e-05 Score=63.65 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhcC-CCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecc
Q psy13224 40 LQSLDVILRKLKAG-GHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTR 114 (160)
Q Consensus 40 ~~~l~~ll~~~~~~-~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~ 114 (160)
...+...+.....+ .+.+|||-.-....+...+.|+. ..+.+..++|.++.++..++++-- .++.+-++++|+
T Consensus 244 ~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~--~~~~RKVVlATN 321 (845)
T COG1643 244 LDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPA--PGGKRKVVLATN 321 (845)
T ss_pred HHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCC--CCCcceEEEEcc
Confidence 34455555555444 45999999999998988888887 457889999999999988865433 344355888999
Q ss_pred ccccccccccCCEEEEeC--------CC----------CCcChhhHHHHHHHhcCCCCceEE
Q psy13224 115 SGGVGINLTGADTVVFYD--------SD----------WNPTMDAQAQDRCHRIGQTRDVHI 158 (160)
Q Consensus 115 ~~~~Gldl~~~~~vi~~~--------~~----------~~~~~~~Q~~gR~~R~gq~~~v~i 158 (160)
++.++|.++++.+||=-. +- -+-+.-.||.||++|-+--.-.+.
T Consensus 322 IAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRL 383 (845)
T COG1643 322 IAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRL 383 (845)
T ss_pred ccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEe
Confidence 999999999999998433 21 122334588888888765443333
No 135
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.79 E-value=0.00047 Score=59.45 Aligned_cols=84 Identities=18% Similarity=0.205 Sum_probs=65.8
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHH-HHHHHHhccCCCceEEEEeccc
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQR-QVLMERFNMDARIFCFILSTRS 115 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r-~~~~~~f~~~~~~~vll~~~~~ 115 (160)
..|..++.+-+....+.|..+||-+.+.+..+.+...|...|+++-+++......++ ..++..= +..--+-++|..
T Consensus 422 ~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~A---G~~GaVTIATNM 498 (939)
T PRK12902 422 IAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQA---GRKGAVTIATNM 498 (939)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhc---CCCCcEEEeccC
Confidence 478888888777778889999999999999999999999999999999997333233 3344332 233337778899
Q ss_pred cccccccc
Q psy13224 116 GGVGINLT 123 (160)
Q Consensus 116 ~~~Gldl~ 123 (160)
+|||.|+.
T Consensus 499 AGRGTDIk 506 (939)
T PRK12902 499 AGRGTDII 506 (939)
T ss_pred CCCCcCEe
Confidence 99999976
No 136
>KOG0952|consensus
Probab=97.71 E-value=0.0002 Score=62.22 Aligned_cols=98 Identities=17% Similarity=0.131 Sum_probs=77.3
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhc----CC-------------------eEEEEECCCCHHHHHHHHHHhccCCCceE
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFH----GH-------------------IYLRLDGTTKVDQRQVLMERFNMDARIFC 108 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~----~~-------------------~~~~~~g~~~~~~r~~~~~~f~~~~~~~v 108 (160)
.+|.+++||++.....-..++.|... |. ...+-|+++..++|...-+.| .++..-
T Consensus 347 ~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F--~~G~i~ 424 (1230)
T KOG0952|consen 347 QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEF--KEGHIK 424 (1230)
T ss_pred HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHH--hcCCce
Confidence 46899999999888666655555421 11 245677889999999999999 455555
Q ss_pred EEEeccccccccccccCCEEEEeCCCCCcCh----------hhHHHHHHHhcC
Q psy13224 109 FILSTRSGGVGINLTGADTVVFYDSDWNPTM----------DAQAQDRCHRIG 151 (160)
Q Consensus 109 ll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~----------~~Q~~gR~~R~g 151 (160)
+|++|...+.|+|||.-..||--.+.|++.. ..|-.||++|.+
T Consensus 425 vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPq 477 (1230)
T KOG0952|consen 425 VLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQ 477 (1230)
T ss_pred EEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCC
Confidence 8999999999999999888888888887655 569999999975
No 137
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.65 E-value=0.00091 Score=58.84 Aligned_cols=115 Identities=21% Similarity=0.213 Sum_probs=74.4
Q ss_pred HHHHHHHHHHh-cCCCeEEEEeccHHHHHHHHHHHHhcCC--eEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q psy13224 41 QSLDVILRKLK-AGGHRVLIFTQMTRMLDVLEAFLNFHGH--IYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGG 117 (160)
Q Consensus 41 ~~l~~ll~~~~-~~~~k~lif~~~~~~~~~l~~~l~~~~~--~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~ 117 (160)
..+.+.+..+. ..+++++|++.+-..++.+.+.|..... .+..+.-+.+...|.++++.|.. .... +|+.+.+..
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~-~~~~-iLlG~~sFw 815 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQ-FDKA-ILLGTSSFW 815 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHh-cCCe-EEEecCccc
Confidence 34444454443 3455788877778888888888875422 12223323333457889999974 2233 566678999
Q ss_pred ccccccc--CCEEEEeCCCCC-cChh-----------------------------hHHHHHHHhcCCCCceE
Q psy13224 118 VGINLTG--ADTVVFYDSDWN-PTMD-----------------------------AQAQDRCHRIGQTRDVH 157 (160)
Q Consensus 118 ~Gldl~~--~~~vi~~~~~~~-~~~~-----------------------------~Q~~gR~~R~gq~~~v~ 157 (160)
+|+|+++ +..||..-.|+. |..+ .|++||.-|-.+.+.+.
T Consensus 816 EGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v 887 (928)
T PRK08074 816 EGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTV 887 (928)
T ss_pred CccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEE
Confidence 9999984 588999887773 3321 37788888877666543
No 138
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.65 E-value=0.00075 Score=57.12 Aligned_cols=102 Identities=21% Similarity=0.193 Sum_probs=73.6
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccc--cCCEE
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLT--GADTV 128 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~--~~~~v 128 (160)
..+.+++||+.+-+.++.+.+.+...... .+...|..+ +...++.|...+.. -+++.+...++|+|++ .+..|
T Consensus 477 ~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~~v 552 (654)
T COG1199 477 ASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG-LILVGGGSFWEGVDFPGDALRLV 552 (654)
T ss_pred hcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC-eEEEeeccccCcccCCCCCeeEE
Confidence 34558889998889999999999877653 344444444 44788888754443 5888889999999998 55888
Q ss_pred EEeCCCCC-cC-----------------------------hhhHHHHHHHhcCCCCceE
Q psy13224 129 VFYDSDWN-PT-----------------------------MDAQAQDRCHRIGQTRDVH 157 (160)
Q Consensus 129 i~~~~~~~-~~-----------------------------~~~Q~~gR~~R~gq~~~v~ 157 (160)
|....|+- |. ...|++||+.|--+.+.+.
T Consensus 553 vI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~i 611 (654)
T COG1199 553 VIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVI 611 (654)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEE
Confidence 88888776 11 1249999999966555543
No 139
>COG4889 Predicted helicase [General function prediction only]
Probab=97.63 E-value=0.00019 Score=61.69 Aligned_cols=93 Identities=19% Similarity=0.241 Sum_probs=65.4
Q ss_pred cHHHHHHHHHHHHhc--CC--eEEEEECCCCHHHHHHHHHHhcc-CCCceEEEEeccccccccccccCCEEEEeCCCCCc
Q psy13224 63 MTRMLDVLEAFLNFH--GH--IYLRLDGTTKVDQRQVLMERFNM-DARIFCFILSTRSGGVGINLTGADTVVFYDSDWNP 137 (160)
Q Consensus 63 ~~~~~~~l~~~l~~~--~~--~~~~~~g~~~~~~r~~~~~~f~~-~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~ 137 (160)
+.+.+++.-..|... ++ .+.-++|.+...+|..+...-+. .+...-+|-...+.++|+|+|..+.|||++|--+.
T Consensus 480 Fe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~sm 559 (1518)
T COG4889 480 FETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSM 559 (1518)
T ss_pred HHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhH
Confidence 334444444344332 33 34567788888888554433321 23333477788899999999999999999999999
Q ss_pred ChhhHHHHHHHhcCCCCc
Q psy13224 138 TMDAQAQDRCHRIGQTRD 155 (160)
Q Consensus 138 ~~~~Q~~gR~~R~gq~~~ 155 (160)
....|++||+-|....|+
T Consensus 560 VDIVQaVGRVMRKa~gK~ 577 (1518)
T COG4889 560 VDIVQAVGRVMRKAKGKK 577 (1518)
T ss_pred HHHHHHHHHHHHhCcCCc
Confidence 999999999999865443
No 140
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.54 E-value=0.0031 Score=54.04 Aligned_cols=112 Identities=18% Similarity=0.363 Sum_probs=80.9
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q psy13224 38 GKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGG 117 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~ 117 (160)
.+.....+|+..+ ..|+++-|||++....+.++++....+.++..+++..+..+ ++.| +...+++.|.+..
T Consensus 267 ~~~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W----~~~~VviYT~~it 337 (824)
T PF02399_consen 267 DETTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESW----KKYDVVIYTPVIT 337 (824)
T ss_pred chhhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----cccc----cceeEEEEeceEE
Confidence 4555666666654 57889999999999999999999999989999988777552 2334 2233666777777
Q ss_pred cccccc--cCCEEEEe--CCCCCcCh--hhHHHHHHHhcCCCCceEEe
Q psy13224 118 VGINLT--GADTVVFY--DSDWNPTM--DAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 118 ~Gldl~--~~~~vi~~--~~~~~~~~--~~Q~~gR~~R~gq~~~v~i~ 159 (160)
-|+++- +.+.++.| .....|.. ..|.+||+.....+ +++||
T Consensus 338 vG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~~-ei~v~ 384 (824)
T PF02399_consen 338 VGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLDN-EIYVY 384 (824)
T ss_pred EEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhccC-eEEEE
Confidence 788874 78888877 33344543 47999999988744 45444
No 141
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=97.54 E-value=0.00084 Score=51.55 Aligned_cols=130 Identities=18% Similarity=0.273 Sum_probs=73.7
Q ss_pred cchhccchhh---hhhhcCCC---CccccccCchHHHHHHHHHHH-----hcCCCeEEEEeccHHHHHHHHHHHHhcCCe
Q psy13224 12 KLRLLHPVTS---AMCTQFPD---PRLIQYDCGKLQSLDVILRKL-----KAGGHRVLIFTQMTRMLDVLEAFLNFHGHI 80 (160)
Q Consensus 12 ~~~~~~~~~~---~~~~~~~~---~~~~~~~~~K~~~l~~ll~~~-----~~~~~k~lif~~~~~~~~~l~~~l~~~~~~ 80 (160)
...+.||++. .|+.++.. .....+.|+|+..|.+|+..+ ...+-+++|.++.....+.++..|-..++.
T Consensus 64 ~~V~~HP~LlvdH~mPk~ll~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~ 143 (297)
T PF11496_consen 64 RLVANHPSLLVDHYMPKQLLLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLN 143 (297)
T ss_dssp HHHHH-GGGT--TT--S-S-STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSE
T ss_pred HHhccCccccccccCccccccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCee
Confidence 3567888762 11222211 112445699999999999998 555669999999999999999999999999
Q ss_pred EEEEECCCCHHHHHHHH------------HHhcc--CCCceEEEEecccccc----ccccccCCEEEEeCCCCCcChhh
Q psy13224 81 YLRLDGTTKVDQRQVLM------------ERFNM--DARIFCFILSTRSGGV----GINLTGADTVVFYDSDWNPTMDA 141 (160)
Q Consensus 81 ~~~~~g~~~~~~r~~~~------------~~f~~--~~~~~vll~~~~~~~~----Gldl~~~~~vi~~~~~~~~~~~~ 141 (160)
+-.+.|..-..+....- ..... .....+.|++++-... .++-..++.||.+|+.+++..+.
T Consensus 144 ~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~ 222 (297)
T PF11496_consen 144 YKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPS 222 (297)
T ss_dssp EEESSS--S--S---S----------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHH
T ss_pred EEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChH
Confidence 99998865544433322 11111 1345556666664433 23344789999999999987654
No 142
>KOG0950|consensus
Probab=97.43 E-value=0.00034 Score=60.21 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHH--------------------------------------hcCCeEEE
Q psy13224 42 SLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLN--------------------------------------FHGHIYLR 83 (160)
Q Consensus 42 ~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~--------------------------------------~~~~~~~~ 83 (160)
.+..++.+...++.++||||+.+.-+..++..+. .-.+.++.
T Consensus 448 ~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAy 527 (1008)
T KOG0950|consen 448 HLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAY 527 (1008)
T ss_pred ceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheecccccee
Confidence 4444555555667789999987764444332111 00223567
Q ss_pred EECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeC----CCCCcChhhHHHHHHHhcC
Q psy13224 84 LDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYD----SDWNPTMDAQAQDRCHRIG 151 (160)
Q Consensus 84 ~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~----~~~~~~~~~Q~~gR~~R~g 151 (160)
.|.+.+.++|..+-..|+ .+...+++++...+.|+|+|.-..+|-.. +.-+.-.|.|.+||++|.|
T Consensus 528 HhaGLT~eER~~iE~afr--~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~g 597 (1008)
T KOG0950|consen 528 HHAGLTSEEREIIEAAFR--EGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTG 597 (1008)
T ss_pred cccccccchHHHHHHHHH--hcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcc
Confidence 788999999999999995 45555777888888899998766655433 2344557789999999998
No 143
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.40 E-value=0.003 Score=54.01 Aligned_cols=92 Identities=16% Similarity=0.200 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc-CCeEEEEECCCCHHHHHHHHHHhccC---CCceEEEEeccc
Q psy13224 40 LQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH-GHIYLRLDGTTKVDQRQVLMERFNMD---ARIFCFILSTRS 115 (160)
Q Consensus 40 ~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~-~~~~~~~~g~~~~~~r~~~~~~f~~~---~~~~vll~~~~~ 115 (160)
.+.+.+.+..+...++.++||+.+-..++.+...|... +. .+...|.. .+..+++.|... +... +|+.+..
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~-~ll~Q~~~---~~~~ll~~f~~~~~~~~~~-VL~g~~s 594 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRL-MLLVQGDQ---PRQRLLEKHKKRVDEGEGS-VLFGLQS 594 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCC-cEEEeCCc---hHHHHHHHHHHHhccCCCe-EEEEecc
Confidence 44555555555445556788887788888888888743 33 34556643 466788777532 2333 5666688
Q ss_pred cccccccc--cCCEEEEeCCCCC
Q psy13224 116 GGVGINLT--GADTVVFYDSDWN 136 (160)
Q Consensus 116 ~~~Gldl~--~~~~vi~~~~~~~ 136 (160)
..+|+|++ .++.||....|+.
T Consensus 595 f~EGVD~pGd~l~~vII~kLPF~ 617 (697)
T PRK11747 595 FAEGLDLPGDYLTQVIITKIPFA 617 (697)
T ss_pred ccccccCCCCceEEEEEEcCCCC
Confidence 99999998 4789999987774
No 144
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.38 E-value=0.004 Score=54.18 Aligned_cols=91 Identities=13% Similarity=0.098 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccccccc
Q psy13224 41 QSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGI 120 (160)
Q Consensus 41 ~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gl 120 (160)
..+.+.+..+...+++++|++.+-+.++.+.+.|....+.. ...|... .+.+++++|.. +..-+|+.+.+..+|+
T Consensus 634 ~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~--~~~~vLlG~~sFwEGV 708 (820)
T PRK07246 634 EEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDR--GEQQILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHc--CCCeEEEecchhhCCC
Confidence 35555555555556688888888888888888887655443 5555433 25668999974 2233667779999999
Q ss_pred ccc--cCCEEEEeCCCCC
Q psy13224 121 NLT--GADTVVFYDSDWN 136 (160)
Q Consensus 121 dl~--~~~~vi~~~~~~~ 136 (160)
|++ ....+|..-.|+.
T Consensus 709 D~p~~~~~~viI~kLPF~ 726 (820)
T PRK07246 709 DFVQADRMIEVITRLPFD 726 (820)
T ss_pred CCCCCCeEEEEEecCCCC
Confidence 996 3455666675544
No 145
>KOG0920|consensus
Probab=97.38 E-value=0.00059 Score=59.11 Aligned_cols=112 Identities=16% Similarity=0.217 Sum_probs=87.8
Q ss_pred chHHHHHHHHHHHhcCC--CeEEEEeccHHHHHHHHHHHHhc-------CCeEEEEECCCCHHHHHHHHHHhccCCCceE
Q psy13224 38 GKLQSLDVILRKLKAGG--HRVLIFTQMTRMLDVLEAFLNFH-------GHIYLRLDGTTKVDQRQVLMERFNMDARIFC 108 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~--~k~lif~~~~~~~~~l~~~l~~~-------~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~v 108 (160)
-..+.+.+++..+.+.+ +.+|||-........+.+.|+.+ .+.+..+|+.++..+...++... ..+.+-
T Consensus 395 id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~p--p~g~RK 472 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRP--PKGTRK 472 (924)
T ss_pred ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCC--CCCcch
Confidence 46778888888775543 59999999999888888888742 36678999999999988888777 667777
Q ss_pred EEEeccccccccccccCCEEE--------EeCCCCC----------cChhhHHHHHHHhcC
Q psy13224 109 FILSTRSGGVGINLTGADTVV--------FYDSDWN----------PTMDAQAQDRCHRIG 151 (160)
Q Consensus 109 ll~~~~~~~~Gldl~~~~~vi--------~~~~~~~----------~~~~~Q~~gR~~R~g 151 (160)
++++|..+...+.+.++-+|| .|||..+ .+.-.||.||++|.-
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~ 533 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVR 533 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCcc
Confidence 999999999999999998887 4555333 233459999999863
No 146
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.35 E-value=0.0037 Score=53.49 Aligned_cols=93 Identities=14% Similarity=0.196 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhc-CCCeEEEEeccHHHHHHHHHHHHhcCC-------eEEEEECCCCHHHHHHHHHHhccC---CCceEE
Q psy13224 41 QSLDVILRKLKA-GGHRVLIFTQMTRMLDVLEAFLNFHGH-------IYLRLDGTTKVDQRQVLMERFNMD---ARIFCF 109 (160)
Q Consensus 41 ~~l~~ll~~~~~-~~~k~lif~~~~~~~~~l~~~l~~~~~-------~~~~~~g~~~~~~r~~~~~~f~~~---~~~~vl 109 (160)
..+.+.|..+.. .++.+|||..+-..++.+.+.+...++ +.+.+.+... .++..+++.|... +... +
T Consensus 508 ~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~-~~~~~~l~~f~~~~~~~~ga-v 585 (705)
T TIGR00604 508 RNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDA-QETSDALERYKQAVSEGRGA-V 585 (705)
T ss_pred HHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCc-chHHHHHHHHHHHHhcCCce-E
Confidence 445555544433 356888888888888888777765432 3455555433 6788899999632 2233 5
Q ss_pred EEec--cccccccccc--cCCEEEEeCCCC
Q psy13224 110 ILST--RSGGVGINLT--GADTVVFYDSDW 135 (160)
Q Consensus 110 l~~~--~~~~~Gldl~--~~~~vi~~~~~~ 135 (160)
|+++ ...++|+|++ .+..||....|+
T Consensus 586 L~av~gGk~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 586 LLSVAGGKVSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred EEEecCCcccCccccCCCCCcEEEEEccCC
Confidence 5555 6789999998 589999999887
No 147
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.34 E-value=0.00067 Score=58.06 Aligned_cols=115 Identities=17% Similarity=0.218 Sum_probs=86.9
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
..|..++.+-+......|.++||.+.+.+..+.+.+.|.+.|++.-+++......+-..+. + .+..--+=++|..+
T Consensus 412 ~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia--~--AG~~gaVTiATNMA 487 (822)
T COG0653 412 EEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEIIA--Q--AGQPGAVTIATNMA 487 (822)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHHHHh--h--cCCCCccccccccc
Confidence 3588888777777788899999999999999999999999999999999988855444333 2 22223366789999
Q ss_pred ccccccc-cCC----------EEEEeCCCCCcChhhHHHHHHHhcCCCCc
Q psy13224 117 GVGINLT-GAD----------TVVFYDSDWNPTMDAQAQDRCHRIGQTRD 155 (160)
Q Consensus 117 ~~Gldl~-~~~----------~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~ 155 (160)
|+|-|+. +.+ +||=.+-.-+...-.|--||++|.|....
T Consensus 488 GRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~ 537 (822)
T COG0653 488 GRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGS 537 (822)
T ss_pred cCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcch
Confidence 9999987 444 45555555555555699999999995443
No 148
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.28 E-value=0.013 Score=47.24 Aligned_cols=113 Identities=17% Similarity=0.174 Sum_probs=85.7
Q ss_pred cCchHHHHHH-HHHHHh-c-CCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe
Q psy13224 36 DCGKLQSLDV-ILRKLK-A-GGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS 112 (160)
Q Consensus 36 ~~~K~~~l~~-ll~~~~-~-~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~ 112 (160)
...++..+.+ ++..+. . ....+|||..+=-..-.+...|+..++.++.++.-.+..+-.++-..|. .+...++|.
T Consensus 279 ~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~-~G~~~iLL~- 356 (442)
T PF06862_consen 279 PDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFF-HGRKPILLY- 356 (442)
T ss_pred hhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHH-cCCceEEEE-
Confidence 3467777666 555555 2 3469999998777777899999999999999999999999999999997 444554444
Q ss_pred ccccc--cccccccCCEEEEeCCCCCcChhhHHHHHHHhc
Q psy13224 113 TRSGG--VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRI 150 (160)
Q Consensus 113 ~~~~~--~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 150 (160)
|.-+- +=..+.++.+||||.||-+|.-|..-++-+..-
T Consensus 357 TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~ 396 (442)
T PF06862_consen 357 TERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDES 396 (442)
T ss_pred EhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhccc
Confidence 44322 455678999999999999999888777655443
No 149
>KOG0951|consensus
Probab=97.26 E-value=0.0021 Score=57.19 Aligned_cols=70 Identities=19% Similarity=0.222 Sum_probs=55.7
Q ss_pred eEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEE----eCCCC------CcChhhHHHHHHHh
Q psy13224 80 IYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVF----YDSDW------NPTMDAQAQDRCHR 149 (160)
Q Consensus 80 ~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~----~~~~~------~~~~~~Q~~gR~~R 149 (160)
.+++-|++++..+|...-+-|. .+...++++|...++|+|++.-+.+|- |+|.. +|-...|..||++|
T Consensus 609 gfaIHhAGl~R~dR~~~EdLf~--~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragr 686 (1674)
T KOG0951|consen 609 GFAIHHAGLNRKDRELVEDLFA--DGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGR 686 (1674)
T ss_pred cceeeccCCCcchHHHHHHHHh--cCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCC
Confidence 4788999999999999999995 445558899999999999997666663 44432 35566799999999
Q ss_pred cC
Q psy13224 150 IG 151 (160)
Q Consensus 150 ~g 151 (160)
.+
T Consensus 687 p~ 688 (1674)
T KOG0951|consen 687 PQ 688 (1674)
T ss_pred Cc
Confidence 76
No 150
>KOG0947|consensus
Probab=97.23 E-value=0.0024 Score=55.36 Aligned_cols=109 Identities=18% Similarity=0.200 Sum_probs=77.0
Q ss_pred HHHHHHHHHhcCC-CeEEEEeccHHHHHHHHHHHHhcCC---------------------------------------eE
Q psy13224 42 SLDVILRKLKAGG-HRVLIFTQMTRMLDVLEAFLNFHGH---------------------------------------IY 81 (160)
Q Consensus 42 ~l~~ll~~~~~~~-~k~lif~~~~~~~~~l~~~l~~~~~---------------------------------------~~ 81 (160)
....++.++.... -.+++|+-+...++.-+++|...++ ..
T Consensus 554 ~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGi 633 (1248)
T KOG0947|consen 554 TWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGI 633 (1248)
T ss_pred hHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcc
Confidence 3666777665443 3888998888877777777652221 14
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCC---------CCCcChhhHHHHHHHhcCC
Q psy13224 82 LRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDS---------DWNPTMDAQAQDRCHRIGQ 152 (160)
Q Consensus 82 ~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~---------~~~~~~~~Q~~gR~~R~gq 152 (160)
++-||+.=+--++-+---| +.+..-+|.+|...+.|+|+|. ..|||-.. .-.|+.|.|..||++|-|-
T Consensus 634 aVHH~GlLPivKE~VE~LF--qrGlVKVLFATETFAMGVNMPA-RtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGl 710 (1248)
T KOG0947|consen 634 AVHHGGLLPIVKEVVELLF--QRGLVKVLFATETFAMGVNMPA-RTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGL 710 (1248)
T ss_pred hhhcccchHHHHHHHHHHH--hcCceEEEeehhhhhhhcCCCc-eeEEeeehhhccCcceeecCChhHHhhhcccccccc
Confidence 5677777766666566666 5555558889999999999884 55666554 4469999999999999985
Q ss_pred C
Q psy13224 153 T 153 (160)
Q Consensus 153 ~ 153 (160)
.
T Consensus 711 D 711 (1248)
T KOG0947|consen 711 D 711 (1248)
T ss_pred C
Confidence 3
No 151
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.17 E-value=0.0033 Score=54.91 Aligned_cols=89 Identities=20% Similarity=0.284 Sum_probs=68.6
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEecc---HHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe--
Q psy13224 38 GKLQSLDVILRKLKAGGHRVLIFTQM---TRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS-- 112 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~k~lif~~~---~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~-- 112 (160)
+=...+.++++.+ |.=.|||++. .+.++.+.+.|+.+|+++..++.+. .+.++.|. .+...+++..
T Consensus 322 ~~~e~~~elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~~-----~~~le~F~-~GeidvLVGvAs 392 (1187)
T COG1110 322 ESLEKVVELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAEK-----EEALEDFE-EGEVDVLVGVAS 392 (1187)
T ss_pred ccHHHHHHHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeeccc-----hhhhhhhc-cCceeEEEEecc
Confidence 3455566677654 4567999998 8889999999999999998887732 56889997 5556655542
Q ss_pred -ccccccccccc-cCCEEEEeCCCC
Q psy13224 113 -TRSGGVGINLT-GADTVVFYDSDW 135 (160)
Q Consensus 113 -~~~~~~Gldl~-~~~~vi~~~~~~ 135 (160)
..+.-+|+|+| .+.++||+..|.
T Consensus 393 yYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 393 YYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred cccceeecCCchhheeEEEEecCCc
Confidence 23566999998 999999999883
No 152
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.16 E-value=0.0043 Score=42.48 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=35.9
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccc--cCCEEEEeCCCCC
Q psy13224 82 LRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLT--GADTVVFYDSDWN 136 (160)
Q Consensus 82 ~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~--~~~~vi~~~~~~~ 136 (160)
....+ .+..+...+++.|...... .+|+++...++|+|++ .+..||+...|+.
T Consensus 26 i~~e~-~~~~~~~~~l~~f~~~~~~-~iL~~~~~~~EGiD~~g~~~r~vii~glPfp 80 (141)
T smart00492 26 LLVQG-EDGKETGKLLEKYVEACEN-AILLATARFSEGVDFPGDYLRAVIIDGLPFP 80 (141)
T ss_pred EEEeC-CChhHHHHHHHHHHHcCCC-EEEEEccceecceecCCCCeeEEEEEecCCC
Confidence 34444 4444678899999743322 4666666699999998 4678888886653
No 153
>KOG0922|consensus
Probab=97.02 E-value=0.011 Score=49.55 Aligned_cols=106 Identities=21% Similarity=0.246 Sum_probs=75.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhc----CC----eEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccccccccccc
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNFH----GH----IYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTG 124 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~~----~~----~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~ 124 (160)
...-+|||-.-.+..+...+.|.+. +- -+..++|+++.++..++++.- +++.+-++++|+.+.+.+.+++
T Consensus 257 ~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~--p~g~RKvIlsTNIAETSlTI~G 334 (674)
T KOG0922|consen 257 PPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPA--PPGKRKVILSTNIAETSLTIDG 334 (674)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCC--CCCcceEEEEcceeeeeEEecc
Confidence 3458999999988888888777753 11 246799999999988777554 5678889999999999999999
Q ss_pred CCEEE--------EeCCCCCcC-------hhhHHHHHHHhcCCCCceEEeC
Q psy13224 125 ADTVV--------FYDSDWNPT-------MDAQAQDRCHRIGQTRDVHIYR 160 (160)
Q Consensus 125 ~~~vi--------~~~~~~~~~-------~~~Q~~gR~~R~gq~~~v~i~r 160 (160)
+.+|| .|+|-.-.. .-.|+.-|++|.|++.+-..||
T Consensus 335 I~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyR 385 (674)
T KOG0922|consen 335 IRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYR 385 (674)
T ss_pred eEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEE
Confidence 99987 344321111 2235666666666666666665
No 154
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.94 E-value=0.0071 Score=51.67 Aligned_cols=101 Identities=21% Similarity=0.227 Sum_probs=72.1
Q ss_pred CCeEEEEeccHHHHHHHHHHHHhc--CCeEEEEECCCCHHH--HHHHHHHhccCCCceEEEEeccccccccccccCCEEE
Q psy13224 54 GHRVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDGTTKVDQ--RQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVV 129 (160)
Q Consensus 54 ~~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~~~~--r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi 129 (160)
|...|+++-.- .+.+++.|+.. +.++..++++..... -...+..|.+.+.+ ||+.|+..+.|+|+++.+-|.
T Consensus 482 gs~~L~~~G~G--terieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~d--ILiGTQmiaKG~~fp~vtLVg 557 (730)
T COG1198 482 GSEHLRAVGPG--TERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEAD--ILIGTQMIAKGHDFPNVTLVG 557 (730)
T ss_pred CCCeeEEeccc--HHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCC--eeecchhhhcCCCcccceEEE
Confidence 44556665432 35666666654 778888988776543 46788999644434 888999999999999999988
Q ss_pred EeCCCCC------------cChhhHHHHHHHhcCCCCceEE
Q psy13224 130 FYDSDWN------------PTMDAQAQDRCHRIGQTRDVHI 158 (160)
Q Consensus 130 ~~~~~~~------------~~~~~Q~~gR~~R~gq~~~v~i 158 (160)
.++.+-. ...+.|..||++|-+....|.|
T Consensus 558 vl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvI 598 (730)
T COG1198 558 VLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVI 598 (730)
T ss_pred EEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEE
Confidence 8875322 3345699999999877766654
No 155
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.89 E-value=0.022 Score=47.06 Aligned_cols=96 Identities=11% Similarity=0.132 Sum_probs=71.9
Q ss_pred cccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc-CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH-GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS 112 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~-~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~ 112 (160)
.++|+|......++......|+++|+-+.....+..+.+.|+.. +..+..+||+.+..+|......-. .+...+++.+
T Consensus 5 ~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~-~g~~~IVVGT 83 (505)
T TIGR00595 5 VTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVK-NGEILVVIGT 83 (505)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHH-cCCCCEEECC
Confidence 46789999998888887788889999999988887777777754 678899999999999887776664 3344555544
Q ss_pred ccccccccccccCCEEEEeC
Q psy13224 113 TRSGGVGINLTGADTVVFYD 132 (160)
Q Consensus 113 ~~~~~~Gldl~~~~~vi~~~ 132 (160)
..+. =+.+.+...||.-+
T Consensus 84 rsal--f~p~~~l~lIIVDE 101 (505)
T TIGR00595 84 RSAL--FLPFKNLGLIIVDE 101 (505)
T ss_pred hHHH--cCcccCCCEEEEEC
Confidence 4333 13466777777665
No 156
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.82 E-value=0.0023 Score=55.34 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=35.0
Q ss_pred ccCchHHHHHHHHHHHhcC---------CCeEEEEeccHHHHHHHHHHHHh
Q psy13224 35 YDCGKLQSLDVILRKLKAG---------GHRVLIFTQMTRMLDVLEAFLNF 76 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~~~---------~~k~lif~~~~~~~~~l~~~l~~ 76 (160)
...||...|.++|+++... +.++||||+..+++..|.+.|..
T Consensus 267 Ee~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 267 EENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred ccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 3589999999999887543 35899999999999998888865
No 157
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.80 E-value=0.0072 Score=41.38 Aligned_cols=54 Identities=13% Similarity=0.316 Sum_probs=33.8
Q ss_pred EEEECCCCHHHHHHHHHHhccCCC-ceEEEEeccc--ccccccccc--CCEEEEeCCCCC
Q psy13224 82 LRLDGTTKVDQRQVLMERFNMDAR-IFCFILSTRS--GGVGINLTG--ADTVVFYDSDWN 136 (160)
Q Consensus 82 ~~~~g~~~~~~r~~~~~~f~~~~~-~~vll~~~~~--~~~Gldl~~--~~~vi~~~~~~~ 136 (160)
..+.+..+ .+..++++.|..... ...+|+++.. .++|+|+++ ++.||....|+.
T Consensus 23 i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp 81 (142)
T smart00491 23 VFIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFP 81 (142)
T ss_pred EEEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCC
Confidence 44444433 345778888874221 0135555554 899999984 678888887764
No 158
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.77 E-value=0.031 Score=47.78 Aligned_cols=98 Identities=12% Similarity=0.085 Sum_probs=72.6
Q ss_pred cccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHH----HHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEE
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLE----AFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCF 109 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~----~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vl 109 (160)
.++|+|.......+-.....|.++++-+.+...+.... +.++..++++..++|+.+..+|........ .+...++
T Consensus 290 ~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~-~g~~~Iv 368 (681)
T PRK10917 290 DVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIA-SGEADIV 368 (681)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHh-CCCCCEE
Confidence 34789998766555444566889999999888765544 444455899999999999999999888886 4456666
Q ss_pred EEeccccccccccccCCEEEEeC
Q psy13224 110 ILSTRSGGVGINLTGADTVVFYD 132 (160)
Q Consensus 110 l~~~~~~~~Gldl~~~~~vi~~~ 132 (160)
+.++......+.+.+...+|.=+
T Consensus 369 VgT~~ll~~~v~~~~l~lvVIDE 391 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVIIDE 391 (681)
T ss_pred EchHHHhcccchhcccceEEEec
Confidence 66666666677788888887744
No 159
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.77 E-value=0.033 Score=47.65 Aligned_cols=96 Identities=10% Similarity=0.047 Sum_probs=72.3
Q ss_pred cccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc-CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH-GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS 112 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~-~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~ 112 (160)
.++|+|......++......|.++||-+.....+..+.+.|+.. +..+..+||+.+..+|........ .+...+++.+
T Consensus 170 ~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~-~g~~~IVVgT 248 (679)
T PRK05580 170 VTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAK-RGEAKVVIGA 248 (679)
T ss_pred CCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHH-cCCCCEEEec
Confidence 45789999988888777777889999999999888888888764 788999999999999887777765 3344555544
Q ss_pred ccccccccccccCCEEEEeC
Q psy13224 113 TRSGGVGINLTGADTVVFYD 132 (160)
Q Consensus 113 ~~~~~~Gldl~~~~~vi~~~ 132 (160)
..+. =+.+.+...||.-+
T Consensus 249 rsal--~~p~~~l~liVvDE 266 (679)
T PRK05580 249 RSAL--FLPFKNLGLIIVDE 266 (679)
T ss_pred cHHh--cccccCCCEEEEEC
Confidence 3332 24566777777766
No 160
>KOG0948|consensus
Probab=96.58 E-value=0.0043 Score=52.72 Aligned_cols=107 Identities=15% Similarity=0.121 Sum_probs=73.8
Q ss_pred HHHHHHHHhc-CCCeEEEEeccHHHHHHHHHHHHhcCCe---------------------------------------EE
Q psy13224 43 LDVILRKLKA-GGHRVLIFTQMTRMLDVLEAFLNFHGHI---------------------------------------YL 82 (160)
Q Consensus 43 l~~ll~~~~~-~~~k~lif~~~~~~~~~l~~~l~~~~~~---------------------------------------~~ 82 (160)
+.++++.+.. ....+||||-+...++.++..+.+..++ ..
T Consensus 371 i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIG 450 (1041)
T KOG0948|consen 371 IYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIG 450 (1041)
T ss_pred HHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccc
Confidence 3445555544 3569999999888888776655433222 23
Q ss_pred EEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCC---------CCCcChhhHHHHHHHhcCC
Q psy13224 83 RLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDS---------DWNPTMDAQAQDRCHRIGQ 152 (160)
Q Consensus 83 ~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~---------~~~~~~~~Q~~gR~~R~gq 152 (160)
+-|+++-+--++-+---| .++-.-+|.+|...+.|||.|. .+|+|... +-+.+.|+|-.||++|-|-
T Consensus 451 IHHsGLLPIlKE~IEILF--qEGLvKvLFATETFsiGLNMPA-kTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~ 526 (1041)
T KOG0948|consen 451 IHHSGLLPILKEVIEILF--QEGLVKVLFATETFSIGLNMPA-KTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGI 526 (1041)
T ss_pred cccccchHHHHHHHHHHH--hccHHHHHHhhhhhhhccCCcc-eeEEEeeccccCCcceeeecccceEEecccccccCC
Confidence 566666665555555566 5665557889999999999874 55666553 3357789999999999984
No 161
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.48 E-value=0.015 Score=49.70 Aligned_cols=96 Identities=15% Similarity=0.100 Sum_probs=74.0
Q ss_pred cccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc-CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH-GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS 112 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~-~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~ 112 (160)
.++|+|.+...+++....+.|+++||-..-......+...|+.. |.+++++|+++++.+|.....+.. .+..++++.+
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~-~G~~~vVIGt 303 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRAR-RGEARVVIGT 303 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHh-cCCceEEEEe
Confidence 45799999999999999999999999998777666666666654 788999999999999998888886 5666666655
Q ss_pred ccccccccccccCCEEEEeC
Q psy13224 113 TRSGGVGINLTGADTVVFYD 132 (160)
Q Consensus 113 ~~~~~~Gldl~~~~~vi~~~ 132 (160)
-.+. =+.+.+.--||..+
T Consensus 304 RSAl--F~Pf~~LGLIIvDE 321 (730)
T COG1198 304 RSAL--FLPFKNLGLIIVDE 321 (730)
T ss_pred chhh--cCchhhccEEEEec
Confidence 4433 23455666666654
No 162
>KOG0923|consensus
Probab=96.44 E-value=0.013 Score=49.37 Aligned_cols=105 Identities=14% Similarity=0.144 Sum_probs=73.2
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHh----c-----CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccc
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNF----H-----GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLT 123 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~----~-----~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~ 123 (160)
...-+|||-.-.+......+.|.. . .+-++.+++.++.+...++++-- +++.+-++++|+.+.+.|.+.
T Consensus 472 p~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePt--P~gaRKVVLATNIAETSlTId 549 (902)
T KOG0923|consen 472 PLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPT--PPGARKVVLATNIAETSLTID 549 (902)
T ss_pred CCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCC--CCCceeEEEeecchhhceeec
Confidence 345788998766655555444442 2 44478899999988887776544 566777888999999999999
Q ss_pred cCCEEEEeCC------------------CCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 124 GADTVVFYDS------------------DWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 124 ~~~~vi~~~~------------------~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
++.+||==.. |-+.+.-.||.||++|-|..|=-.+|
T Consensus 550 gI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLY 603 (902)
T KOG0923|consen 550 GIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLY 603 (902)
T ss_pred CeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEee
Confidence 9999873221 11233446999999998866544444
No 163
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.28 E-value=0.079 Score=44.96 Aligned_cols=98 Identities=14% Similarity=0.118 Sum_probs=71.6
Q ss_pred cccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHH----HhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEE
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFL----NFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCF 109 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l----~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vl 109 (160)
.++|+|.......+-.....|.++++-+.+...+....+.+ ...|+++..++|+.+..+|........ .+...++
T Consensus 264 ~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~-~g~~~Ii 342 (630)
T TIGR00643 264 DVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIA-SGQIHLV 342 (630)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHh-CCCCCEE
Confidence 45789998654443334456789999999888766554444 445899999999999999988888875 4455667
Q ss_pred EEeccccccccccccCCEEEEeC
Q psy13224 110 ILSTRSGGVGINLTGADTVVFYD 132 (160)
Q Consensus 110 l~~~~~~~~Gldl~~~~~vi~~~ 132 (160)
+.++......+.+.+...+|+=+
T Consensus 343 VgT~~ll~~~~~~~~l~lvVIDE 365 (630)
T TIGR00643 343 VGTHALIQEKVEFKRLALVIIDE 365 (630)
T ss_pred EecHHHHhccccccccceEEEec
Confidence 76666666777888888877754
No 164
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.08 E-value=0.14 Score=43.81 Aligned_cols=95 Identities=15% Similarity=0.024 Sum_probs=73.0
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc-C-CeEEEEECCCCHHHHHHHHHHhccCCCceEEEEec
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH-G-HIYLRLDGTTKVDQRQVLMERFNMDARIFCFILST 113 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~-~-~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~ 113 (160)
+|+|.+...+++......|+++||-.........+.+.|+.. + -.++.+|+++++.+|.+...... .+...+++.+-
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~-~G~~~IViGtR 248 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVL-RGQARVVVGTR 248 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHh-CCCCcEEEEcc
Confidence 689999999999999999999999999888888888888764 3 67899999999999998888875 44455555443
Q ss_pred cccccccccccCCEEEEeCC
Q psy13224 114 RSGGVGINLTGADTVVFYDS 133 (160)
Q Consensus 114 ~~~~~Gldl~~~~~vi~~~~ 133 (160)
.++ =+.+++..-||..|-
T Consensus 249 SAv--FaP~~~LgLIIvdEE 266 (665)
T PRK14873 249 SAV--FAPVEDLGLVAIWDD 266 (665)
T ss_pred eeE--EeccCCCCEEEEEcC
Confidence 322 234556666666653
No 165
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=96.07 E-value=0.16 Score=43.09 Aligned_cols=87 Identities=9% Similarity=0.117 Sum_probs=59.2
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccC--CCceEEEEecccccccccc-------
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMD--ARIFCFILSTRSGGVGINL------- 122 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~--~~~~vll~~~~~~~~Gldl------- 122 (160)
..|...++|+++ ..+..+.+.|...--..+.+.|..+ .+..++++|... .+..-+|+.+.+.-+|+|+
T Consensus 469 ~~G~~lvLfTS~-~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p 545 (636)
T TIGR03117 469 AQGGTLVLTTAF-SHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSP 545 (636)
T ss_pred cCCCEEEEechH-HHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCC
Confidence 345677777775 4567777777654223356666443 456688889743 2334478888999999999
Q ss_pred -c--cCCEEEEeCCCCCcChhh
Q psy13224 123 -T--GADTVVFYDSDWNPTMDA 141 (160)
Q Consensus 123 -~--~~~~vi~~~~~~~~~~~~ 141 (160)
+ .++.||+.-.|+.+....
T Consensus 546 ~~G~~Ls~ViI~kLPF~~~dp~ 567 (636)
T TIGR03117 546 DKDNLLTDLIITCAPFGLNRSL 567 (636)
T ss_pred CCCCcccEEEEEeCCCCcCChH
Confidence 2 589999999888775554
No 166
>KOG1513|consensus
Probab=95.97 E-value=0.014 Score=50.13 Aligned_cols=62 Identities=23% Similarity=0.390 Sum_probs=44.9
Q ss_pred HHHHhccCCCceEEEEeccccccccccccCCEE--------EEeCCCCCcChhhHHHHHHHhcCC-CCceEEe
Q psy13224 96 LMERFNMDARIFCFILSTRSGGVGINLTGADTV--------VFYDSDWNPTMDAQAQDRCHRIGQ-TRDVHIY 159 (160)
Q Consensus 96 ~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~v--------i~~~~~~~~~~~~Q~~gR~~R~gq-~~~v~i~ 159 (160)
-.++|. ++...|.|+ +.+++-|+.||.=..| |-+++||+...-+|..||.||-+| ..+=+||
T Consensus 849 EKqrFM-~GeK~vAII-SEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvF 919 (1300)
T KOG1513|consen 849 EKQRFM-DGEKLVAII-SEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVF 919 (1300)
T ss_pred HHhhhc-cccceeeee-ehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEE
Confidence 345665 444444444 4888889999854443 568899999999999999999998 4444444
No 167
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.90 E-value=0.13 Score=45.51 Aligned_cols=98 Identities=9% Similarity=0.051 Sum_probs=73.0
Q ss_pred cccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHHHhccCCCceEE
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLMERFNMDARIFCF 109 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vl 109 (160)
..+++|.......+-.....+.+++|-+.+...+....+.+.. .++++..++|..+..++.+..+... .+...++
T Consensus 480 dTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~-~g~~dIV 558 (926)
T TIGR00580 480 DVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELA-SGKIDIL 558 (926)
T ss_pred CCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHH-cCCceEE
Confidence 3468999876554444445678999999999987776665554 4678889999999988888888886 3456667
Q ss_pred EEeccccccccccccCCEEEEeC
Q psy13224 110 ILSTRSGGVGINLTGADTVVFYD 132 (160)
Q Consensus 110 l~~~~~~~~Gldl~~~~~vi~~~ 132 (160)
+.++......+.+.+...+|.=+
T Consensus 559 IGTp~ll~~~v~f~~L~llVIDE 581 (926)
T TIGR00580 559 IGTHKLLQKDVKFKDLGLLIIDE 581 (926)
T ss_pred EchHHHhhCCCCcccCCEEEeec
Confidence 77776777778888888888754
No 168
>KOG0949|consensus
Probab=95.64 E-value=0.02 Score=50.15 Aligned_cols=67 Identities=19% Similarity=0.194 Sum_probs=54.0
Q ss_pred EEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeC-CCCCcChhhHHHHHHHhcC
Q psy13224 83 RLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYD-SDWNPTMDAQAQDRCHRIG 151 (160)
Q Consensus 83 ~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~-~~~~~~~~~Q~~gR~~R~g 151 (160)
+-|++++...|..+---|+ .+.--+|++|...+.|+|.|.-+.|+-.| .-.+|-.|.|..||++|-|
T Consensus 967 ~HHaglNr~yR~~VEvLFR--~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRG 1034 (1330)
T KOG0949|consen 967 VHHAGLNRKYRSLVEVLFR--QGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRG 1034 (1330)
T ss_pred ccccccchHHHHHHHHHhh--cCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccc
Confidence 4788999999998888895 44455788999999999998766665555 3456778899999999987
No 169
>PRK10689 transcription-repair coupling factor; Provisional
Probab=95.14 E-value=0.35 Score=43.92 Aligned_cols=98 Identities=7% Similarity=-0.022 Sum_probs=70.4
Q ss_pred cccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHHHhccCCCceEE
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLMERFNMDARIFCF 109 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vl 109 (160)
.++++|.......+-.....+.+++|-+.+...+.-..+.+.. .++.+..++|..+.+++...+.... .+...++
T Consensus 629 ~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~-~g~~dIV 707 (1147)
T PRK10689 629 DVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAA-EGKIDIL 707 (1147)
T ss_pred CCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHH-hCCCCEE
Confidence 3467999765443333345678999999999887766665553 3567788999999999888888775 3456677
Q ss_pred EEeccccccccccccCCEEEEeC
Q psy13224 110 ILSTRSGGVGINLTGADTVVFYD 132 (160)
Q Consensus 110 l~~~~~~~~Gldl~~~~~vi~~~ 132 (160)
+.++......+++.++..+|.=+
T Consensus 708 VgTp~lL~~~v~~~~L~lLVIDE 730 (1147)
T PRK10689 708 IGTHKLLQSDVKWKDLGLLIVDE 730 (1147)
T ss_pred EECHHHHhCCCCHhhCCEEEEec
Confidence 77777666667778888887744
No 170
>KOG0926|consensus
Probab=94.58 E-value=0.031 Score=48.18 Aligned_cols=73 Identities=16% Similarity=0.245 Sum_probs=54.7
Q ss_pred eEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCC-----------------CC-CcChhh
Q psy13224 80 IYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDS-----------------DW-NPTMDA 141 (160)
Q Consensus 80 ~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~-----------------~~-~~~~~~ 141 (160)
.+..+++-++.++..++++.- +.+.+.++++|+++.+.|.+|++.+||=..- .| +-+.-.
T Consensus 606 yvLPLYSLLs~~~Q~RVF~~~--p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASad 683 (1172)
T KOG0926|consen 606 YVLPLYSLLSTEKQMRVFDEV--PKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASAD 683 (1172)
T ss_pred EEeehhhhcCHHHhhhhccCC--CCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccc
Confidence 356677778877777777665 6788999999999999999999999985442 11 122235
Q ss_pred HHHHHHHhcCCCC
Q psy13224 142 QAQDRCHRIGQTR 154 (160)
Q Consensus 142 Q~~gR~~R~gq~~ 154 (160)
||.||++|.|-.+
T Consensus 684 QRAGRAGRtgpGH 696 (1172)
T KOG0926|consen 684 QRAGRAGRTGPGH 696 (1172)
T ss_pred hhccccCCCCCCc
Confidence 9999999988543
No 171
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=93.96 E-value=1.1 Score=38.19 Aligned_cols=105 Identities=13% Similarity=0.121 Sum_probs=79.9
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHH----HHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEE
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTR----MLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFIL 111 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~----~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~ 111 (160)
+|+|.....--+-...+.|.++.+-+.+.= +.+.+.++|+..|+.+..++|++...+|.+...... ++...+++.
T Consensus 293 GSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~-~G~~~ivVG 371 (677)
T COG1200 293 GSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLA-SGEIDIVVG 371 (677)
T ss_pred CCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHh-CCCCCEEEE
Confidence 478876543333334677888888887543 456677888888999999999999999999999997 455666776
Q ss_pred eccccccccccccCCEEEEeCCCCCcChhhHHHHHHHh
Q psy13224 112 STRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHR 149 (160)
Q Consensus 112 ~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R 149 (160)
+.......+++++.-.||. ++.||.|=..|
T Consensus 372 THALiQd~V~F~~LgLVIi--------DEQHRFGV~QR 401 (677)
T COG1200 372 THALIQDKVEFHNLGLVII--------DEQHRFGVHQR 401 (677)
T ss_pred cchhhhcceeecceeEEEE--------eccccccHHHH
Confidence 6667888999999998887 44677776655
No 172
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=93.23 E-value=0.18 Score=44.93 Aligned_cols=70 Identities=21% Similarity=0.226 Sum_probs=55.8
Q ss_pred EEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCC---------CCCcChhhHHHHHHHhcCCC
Q psy13224 83 RLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDS---------DWNPTMDAQAQDRCHRIGQT 153 (160)
Q Consensus 83 ~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~---------~~~~~~~~Q~~gR~~R~gq~ 153 (160)
+-|+++=+..+.-+...| ..+-.-+++.|.+.+.|+|.|. .+|++... +-++..|.|-.||++|-|..
T Consensus 449 vHH~GlLP~~K~~vE~Lf--q~GLvkvvFaTeT~s~GiNmPa-rtvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD 525 (1041)
T COG4581 449 VHHAGLLPAIKELVEELF--QEGLVKVVFATETFAIGINMPA-RTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLD 525 (1041)
T ss_pred hhccccchHHHHHHHHHH--hccceeEEeehhhhhhhcCCcc-cceeeeeeEEecCCceeecChhHHHHhhhhhcccccc
Confidence 677888888888888888 6666668889999999999874 45555543 45688999999999999986
Q ss_pred Cc
Q psy13224 154 RD 155 (160)
Q Consensus 154 ~~ 155 (160)
..
T Consensus 526 ~~ 527 (1041)
T COG4581 526 VL 527 (1041)
T ss_pred cc
Confidence 54
No 173
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=92.69 E-value=1.1 Score=40.26 Aligned_cols=99 Identities=15% Similarity=0.104 Sum_probs=60.4
Q ss_pred EEEeccHHHH---HHHHHHHHhc--CCeEEEEECCCCHHHHHHHHHHh---------------------c-cC--CCceE
Q psy13224 58 LIFTQMTRML---DVLEAFLNFH--GHIYLRLDGTTKVDQRQVLMERF---------------------N-MD--ARIFC 108 (160)
Q Consensus 58 lif~~~~~~~---~~l~~~l~~~--~~~~~~~~g~~~~~~r~~~~~~f---------------------~-~~--~~~~v 108 (160)
|.+++....+ ..+...+... .+.++.+|+..+...|...-+.. - +. .+..+
T Consensus 761 iR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~ 840 (1110)
T TIGR02562 761 IRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLF 840 (1110)
T ss_pred EEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCe
Confidence 4555544433 3333333333 34588899988777765543331 1 11 13557
Q ss_pred EEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCc----eEEe
Q psy13224 109 FILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRD----VHIY 159 (160)
Q Consensus 109 ll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~----v~i~ 159 (160)
++++|.+...|+|+- .+.+|- + +-.....+|+.||+.|.|+... +.||
T Consensus 841 i~v~Tqv~E~g~D~d-fd~~~~-~-~~~~~sliQ~aGR~~R~~~~~~~~~N~~i~ 892 (1110)
T TIGR02562 841 IVLATPVEEVGRDHD-YDWAIA-D-PSSMRSIIQLAGRVNRHRLEKVQQPNIVIL 892 (1110)
T ss_pred EEEEeeeEEEEeccc-CCeeee-c-cCcHHHHHHHhhcccccccCCCCCCcEEEe
Confidence 999999999999964 455443 2 2234567899999999987544 5554
No 174
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.24 E-value=2.6 Score=34.48 Aligned_cols=98 Identities=12% Similarity=0.176 Sum_probs=68.7
Q ss_pred cccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEE
Q psy13224 32 LIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFIL 111 (160)
Q Consensus 32 ~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~ 111 (160)
..+++++|.... ++-.+ ..+..+||.+...+.+....+.|...|+....+++..+..++..+..... .+...++++
T Consensus 32 ~apTGsGKTl~y--~lp~l-~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~-~~~~~il~~ 107 (470)
T TIGR00614 32 VMPTGGGKSLCY--QLPAL-CSDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLK-DGKIKLLYV 107 (470)
T ss_pred EcCCCCcHhHHH--HHHHH-HcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh-cCCCCEEEE
Confidence 356678998642 22222 23568899999988877777788888999999999999988888887775 455677777
Q ss_pred ecccccccc-------ccccCCEEEEeCC
Q psy13224 112 STRSGGVGI-------NLTGADTVVFYDS 133 (160)
Q Consensus 112 ~~~~~~~Gl-------dl~~~~~vi~~~~ 133 (160)
++....... ...++..+|+-+-
T Consensus 108 TPe~l~~~~~~~~~l~~~~~i~~iViDEa 136 (470)
T TIGR00614 108 TPEKCSASNRLLQTLEERKGITLIAVDEA 136 (470)
T ss_pred CHHHHcCchhHHHHHHhcCCcCEEEEeCC
Confidence 776544322 3446667666553
No 175
>KOG0924|consensus
Probab=92.07 E-value=0.44 Score=40.78 Aligned_cols=94 Identities=12% Similarity=0.144 Sum_probs=66.6
Q ss_pred CchHHHHHHHHHHH----hc-CCCeEEEEeccHH----HHHHHHHHHHhc------CCeEEEEECCCCHHHHHHHHHHhc
Q psy13224 37 CGKLQSLDVILRKL----KA-GGHRVLIFTQMTR----MLDVLEAFLNFH------GHIYLRLDGTTKVDQRQVLMERFN 101 (160)
Q Consensus 37 ~~K~~~l~~ll~~~----~~-~~~k~lif~~~~~----~~~~l~~~l~~~------~~~~~~~~g~~~~~~r~~~~~~f~ 101 (160)
.+-.+.+...++.. .. ...-+|||-.-.+ +++.+.+.|... ++.+..|++.++..-..++++.-
T Consensus 541 ~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a- 619 (1042)
T KOG0924|consen 541 TPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKA- 619 (1042)
T ss_pred CchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccC-
Confidence 34555555555443 22 2257889986444 455566655542 67889999999988777777655
Q ss_pred cCCCceEEEEeccccccccccccCCEEEEeC
Q psy13224 102 MDARIFCFILSTRSGGVGINLTGADTVVFYD 132 (160)
Q Consensus 102 ~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~ 132 (160)
.++.+-++++|.++.+.|.++++.+||=..
T Consensus 620 -~~~vRK~IvATNIAETSLTi~gI~yVID~G 649 (1042)
T KOG0924|consen 620 -EGGVRKCIVATNIAETSLTIPGIRYVIDTG 649 (1042)
T ss_pred -CCCceeEEEeccchhhceeecceEEEEecC
Confidence 567777999999999999999999998654
No 176
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=90.75 E-value=1.9 Score=29.32 Aligned_cols=84 Identities=17% Similarity=0.144 Sum_probs=51.4
Q ss_pred eEEEEeccHHHHHHHHHHHHhcCC--eEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCC
Q psy13224 56 RVLIFTQMTRMLDVLEAFLNFHGH--IYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDS 133 (160)
Q Consensus 56 k~lif~~~~~~~~~l~~~l~~~~~--~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~ 133 (160)
.+=+++++-.....+...+...|+ ...+-.|....-.-..+++.|.+++..+++++.....+
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E~~~---------------- 66 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYLEGIG---------------- 66 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEES--S----------------
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEccCCC----------------
Confidence 455888888888888888888754 45666666665667789999998888888887755443
Q ss_pred CCCcChhhHHHHHHHhcCCCCceEEeC
Q psy13224 134 DWNPTMDAQAQDRCHRIGQTRDVHIYR 160 (160)
Q Consensus 134 ~~~~~~~~Q~~gR~~R~gq~~~v~i~r 160 (160)
++..+.....|+.| +|||.+||
T Consensus 67 --d~~~f~~~~~~a~~---~KPVv~lk 88 (138)
T PF13607_consen 67 --DGRRFLEAARRAAR---RKPVVVLK 88 (138)
T ss_dssp ---HHHHHHHHHHHCC---CS-EEEEE
T ss_pred --CHHHHHHHHHHHhc---CCCEEEEe
Confidence 34455555555543 37877764
No 177
>PRK14701 reverse gyrase; Provisional
Probab=90.34 E-value=3.8 Score=38.87 Aligned_cols=83 Identities=11% Similarity=0.078 Sum_probs=57.0
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHh------cCCeEEEEECCCCHHHHHHHHHHhccCCCc
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNF------HGHIYLRLDGTTKVDQRQVLMERFNMDARI 106 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~------~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ 106 (160)
.+++++|.....-+.......+.+++|.+.+.+.+..+.+.|.. .++.++.++|+.+..++......+. .+..
T Consensus 101 APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~-~g~~ 179 (1638)
T PRK14701 101 APTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIE-NGDF 179 (1638)
T ss_pred EcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHh-cCCC
Confidence 55678999843322222233567999999999887777766665 2567788999999998888887775 3445
Q ss_pred eEEEEecccc
Q psy13224 107 FCFILSTRSG 116 (160)
Q Consensus 107 ~vll~~~~~~ 116 (160)
.++++++...
T Consensus 180 dILV~TPgrL 189 (1638)
T PRK14701 180 DILVTTAQFL 189 (1638)
T ss_pred CEEEECCchh
Confidence 5666665543
No 178
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=89.96 E-value=1.9 Score=32.12 Aligned_cols=94 Identities=13% Similarity=0.080 Sum_probs=63.9
Q ss_pred EEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCC--CceEEEEeccccccccccccCCEEEEeCCCCC
Q psy13224 59 IFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDA--RIFCFILSTRSGGVGINLTGADTVVFYDSDWN 136 (160)
Q Consensus 59 if~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~--~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~ 136 (160)
..-++.+....|...+.. ++.+.+++++.+... -.|.+.+ +..+|++.-...+||+.+.+.....+.-.+.+
T Consensus 92 ~~~s~~ei~~~l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~ 165 (239)
T PF10593_consen 92 DPPSWEEIKPELPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQ 165 (239)
T ss_pred CCcCHHHHHHHHHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCch
Confidence 334555666777777776 799999998776543 3443222 13778889999999999999999999998875
Q ss_pred cChhhHHHHHH--HhcCCCCceEEe
Q psy13224 137 PTMDAQAQDRC--HRIGQTRDVHIY 159 (160)
Q Consensus 137 ~~~~~Q~~gR~--~R~gq~~~v~i~ 159 (160)
...+ +..||= +|.|=..-|.||
T Consensus 166 ~DTL-~QmgRwFGYR~gY~dl~Ri~ 189 (239)
T PF10593_consen 166 YDTL-MQMGRWFGYRPGYEDLCRIY 189 (239)
T ss_pred HHHH-HHHhhcccCCcccccceEEe
Confidence 5554 556665 333423335554
No 179
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=89.45 E-value=3.6 Score=37.72 Aligned_cols=99 Identities=16% Similarity=0.100 Sum_probs=64.5
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHh----cCCeEE---EEECCCCHHHHHHHHHHhccCCC
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNF----HGHIYL---RLDGTTKVDQRQVLMERFNMDAR 105 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~----~~~~~~---~~~g~~~~~~r~~~~~~f~~~~~ 105 (160)
.+++++|.....-++..+...+.+++|.+.+.+.+..+.+.+.. .++... .++|+.+.+++......+. +++
T Consensus 100 ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~-~~~ 178 (1171)
T TIGR01054 100 APTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIE-NGD 178 (1171)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHh-cCC
Confidence 45578999765544444445578999999999877666655553 344433 5799999998888888876 344
Q ss_pred ceEEEEeccccccccc-cc-cCCEEEEeC
Q psy13224 106 IFCFILSTRSGGVGIN-LT-GADTVVFYD 132 (160)
Q Consensus 106 ~~vll~~~~~~~~Gld-l~-~~~~vi~~~ 132 (160)
..+++.++......++ +. +++.+|.=+
T Consensus 179 ~dIlV~Tp~rL~~~~~~l~~~~~~iVvDE 207 (1171)
T TIGR01054 179 FDILITTTMFLSKNYDELGPKFDFIFVDD 207 (1171)
T ss_pred CCEEEECHHHHHHHHHHhcCCCCEEEEeC
Confidence 5666666654443322 12 566666655
No 180
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=88.89 E-value=4.8 Score=36.23 Aligned_cols=87 Identities=16% Similarity=0.114 Sum_probs=59.5
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHH----hcC-CeEEE-EECCCCHHHHHHHHHHhccCCCc
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLN----FHG-HIYLR-LDGTTKVDQRQVLMERFNMDARI 106 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~----~~~-~~~~~-~~g~~~~~~r~~~~~~f~~~~~~ 106 (160)
.+++.+|.-...-+-..+...|+++.+...+...+....+.|+ ..+ +.... +|+.++.+++...++++. +++.
T Consensus 104 APTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~-~gdf 182 (1187)
T COG1110 104 APTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIE-SGDF 182 (1187)
T ss_pred cCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHh-cCCc
Confidence 4456788887766666666678888888888776555444444 444 44433 899999999999999997 4556
Q ss_pred eEEEEecccccccc
Q psy13224 107 FCFILSTRSGGVGI 120 (160)
Q Consensus 107 ~vll~~~~~~~~Gl 120 (160)
.+++.++.-...-.
T Consensus 183 dIlitTs~FL~k~~ 196 (1187)
T COG1110 183 DILITTSQFLSKRF 196 (1187)
T ss_pred cEEEEeHHHHHhhH
Confidence 66666655444333
No 181
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=88.46 E-value=8.5 Score=31.31 Aligned_cols=96 Identities=14% Similarity=0.139 Sum_probs=61.1
Q ss_pred ccccCchHHHH-HHHHHHHhcC--CCeEEEEeccHHHHHHHHHHHHh-----cCCeEEEEECCCCHHHHHHHHHHhccCC
Q psy13224 33 IQYDCGKLQSL-DVILRKLKAG--GHRVLIFTQMTRMLDVLEAFLNF-----HGHIYLRLDGTTKVDQRQVLMERFNMDA 104 (160)
Q Consensus 33 ~~~~~~K~~~l-~~ll~~~~~~--~~k~lif~~~~~~~~~l~~~l~~-----~~~~~~~~~g~~~~~~r~~~~~~f~~~~ 104 (160)
.+++++|.... .-++..+... ..+++|.+.+.+.+..+.+.++. .++.+..++|+.+.......+ ..
T Consensus 48 a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l-----~~ 122 (460)
T PRK11776 48 AKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSL-----EH 122 (460)
T ss_pred CCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHh-----cC
Confidence 35578999763 4444443222 23789999999987777766654 267888999998876544333 23
Q ss_pred CceEEEEecccc-----ccccccccCCEEEEeCC
Q psy13224 105 RIFCFILSTRSG-----GVGINLTGADTVVFYDS 133 (160)
Q Consensus 105 ~~~vll~~~~~~-----~~Gldl~~~~~vi~~~~ 133 (160)
+..++++++... ...+++.+...+|+=+-
T Consensus 123 ~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEa 156 (460)
T PRK11776 123 GAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEA 156 (460)
T ss_pred CCCEEEEChHHHHHHHHcCCccHHHCCEEEEECH
Confidence 445566554332 23567788888887653
No 182
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=88.08 E-value=5.1 Score=25.65 Aligned_cols=83 Identities=13% Similarity=0.048 Sum_probs=56.1
Q ss_pred cccCchHHHHHHHHHHHhc--CCCeEEEEeccHHHHHHHHHHHHhcC---CeEEEEECCCCHHHHHHHHHHhccCCCceE
Q psy13224 34 QYDCGKLQSLDVILRKLKA--GGHRVLIFTQMTRMLDVLEAFLNFHG---HIYLRLDGTTKVDQRQVLMERFNMDARIFC 108 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~--~~~k~lif~~~~~~~~~l~~~l~~~~---~~~~~~~g~~~~~~r~~~~~~f~~~~~~~v 108 (160)
..+++|...+..++..... ...++++.+..........+.+.... ..+..+++.....+.. ... .....+
T Consensus 8 ~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~i 82 (144)
T cd00046 8 PTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE---KLL--SGKTDI 82 (144)
T ss_pred CCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH---HHh--cCCCCE
Confidence 3467899888888877654 34699999999888888777776543 7788888876655444 222 344556
Q ss_pred EEEeccccccccc
Q psy13224 109 FILSTRSGGVGIN 121 (160)
Q Consensus 109 ll~~~~~~~~Gld 121 (160)
++.+.+.......
T Consensus 83 ~i~t~~~~~~~~~ 95 (144)
T cd00046 83 VVGTPGRLLDELE 95 (144)
T ss_pred EEECcHHHHHHHH
Confidence 7766665554443
No 183
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=88.07 E-value=8.7 Score=35.01 Aligned_cols=119 Identities=14% Similarity=0.119 Sum_probs=83.2
Q ss_pred chhhhhhhcCCCCccccccC--chHHHHHHHHHHHhcCCCeEEEEeccHHH----HHHHHHHHHhcCCeEEEEECCCCHH
Q psy13224 18 PVTSAMCTQFPDPRLIQYDC--GKLQSLDVILRKLKAGGHRVLIFTQMTRM----LDVLEAFLNFHGHIYLRLDGTTKVD 91 (160)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~--~K~~~l~~ll~~~~~~~~k~lif~~~~~~----~~~l~~~l~~~~~~~~~~~g~~~~~ 91 (160)
.....|.+.-|=..+++.+- +|.+.-..-.=.....|++|.|.+.++-. .+.+.+.+..-++++-.++.=.+.+
T Consensus 605 eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~k 684 (1139)
T COG1197 605 EVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAK 684 (1139)
T ss_pred HHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHH
Confidence 33344444444334444432 68777555554445678999999997664 3445555555577778888889999
Q ss_pred HHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHH
Q psy13224 92 QRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQD 145 (160)
Q Consensus 92 ~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~g 145 (160)
+....++... .+...+++.+....+.++-+.+.--+|. +++||.|
T Consensus 685 E~~~il~~la-~G~vDIvIGTHrLL~kdv~FkdLGLlII--------DEEqRFG 729 (1139)
T COG1197 685 EQKEILKGLA-EGKVDIVIGTHRLLSKDVKFKDLGLLII--------DEEQRFG 729 (1139)
T ss_pred HHHHHHHHHh-cCCccEEEechHhhCCCcEEecCCeEEE--------echhhcC
Confidence 9999999997 5667778888888999999999888887 4477665
No 184
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=87.94 E-value=1.8 Score=29.58 Aligned_cols=40 Identities=20% Similarity=0.106 Sum_probs=35.2
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHH
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLN 75 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~ 75 (160)
..++...+.+|+++....|.+++|.|...+.++.|-+.|=
T Consensus 11 ~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW 50 (142)
T PRK05728 11 LSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALW 50 (142)
T ss_pred chhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc
Confidence 4568999999999999999999999998888888888774
No 185
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=86.74 E-value=2.5 Score=29.37 Aligned_cols=40 Identities=20% Similarity=0.153 Sum_probs=35.4
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHH
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLN 75 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~ 75 (160)
.++++..+.+|+++....|.+++|.+...+.+..|-+.|=
T Consensus 11 ~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LW 50 (154)
T PRK06646 11 DELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLW 50 (154)
T ss_pred CChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhc
Confidence 4689999999999999999999999988888888887773
No 186
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=86.08 E-value=6.5 Score=24.81 Aligned_cols=58 Identities=14% Similarity=0.084 Sum_probs=40.2
Q ss_pred CCeEEEEec------cHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe
Q psy13224 54 GHRVLIFTQ------MTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS 112 (160)
Q Consensus 54 ~~k~lif~~------~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~ 112 (160)
..+++||+. ++-.+....+.|...++++..++=...++.+..+..... ......+.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg-~~tvP~vfi~ 74 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSN-WPTIPQLYVK 74 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhC-CCCCCEEEEC
Confidence 359999974 567788899999999999988887666666666555443 2333334444
No 187
>PTZ00062 glutaredoxin; Provisional
Probab=85.94 E-value=11 Score=27.39 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCCeEEEEec------cHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 43 LDVILRKLKAGGHRVLIFTQ------MTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 43 l~~ll~~~~~~~~k~lif~~------~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
+.+.++++.. ..+++||.. ++..+..+.+.|+..++++..++=....+.|..+. .+........+.+.-+..
T Consensus 102 ~~~~v~~li~-~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~-~~sg~~TvPqVfI~G~~I 179 (204)
T PTZ00062 102 TVEKIERLIR-NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELK-VYSNWPTYPQLYVNGELI 179 (204)
T ss_pred HHHHHHHHHh-cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHH-HHhCCCCCCeEEECCEEE
Confidence 4455555543 369999987 57788899999999999998888777766666544 454344444555554433
No 188
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=85.88 E-value=9.1 Score=36.10 Aligned_cols=95 Identities=18% Similarity=0.121 Sum_probs=61.6
Q ss_pred ccccCchHHHHHH-HHHHHhc------------CCCeEEEEeccHHHHHHHHHHHHh----------------cCCeEEE
Q psy13224 33 IQYDCGKLQSLDV-ILRKLKA------------GGHRVLIFTQMTRMLDVLEAFLNF----------------HGHIYLR 83 (160)
Q Consensus 33 ~~~~~~K~~~l~~-ll~~~~~------------~~~k~lif~~~~~~~~~l~~~l~~----------------~~~~~~~ 83 (160)
.+++|+|.....- +|+.+.. .+-++|+.+..+.....+.+.|+. .++.+..
T Consensus 3 APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~v 82 (1490)
T PRK09751 3 APTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGI 82 (1490)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEE
Confidence 3567888766433 4544432 134899999988876666655532 3678889
Q ss_pred EECCCCHHHHHHHHHHhccCCCceEEEEeccccc-----cc-cccccCCEEEEeC
Q psy13224 84 LDGTTKVDQRQVLMERFNMDARIFCFILSTRSGG-----VG-INLTGADTVVFYD 132 (160)
Q Consensus 84 ~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~-----~G-ldl~~~~~vi~~~ 132 (160)
.+|+.+.++|.+.++ ....++++++.... .+ ..+.++.+||.=+
T Consensus 83 rtGDt~~~eR~rll~-----~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE 132 (1490)
T PRK09751 83 RTGDTPAQERSKLTR-----NPPDILITTPESLYLMLTSRARETLRGVETVIIDE 132 (1490)
T ss_pred EECCCCHHHHHHHhc-----CCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEec
Confidence 999999998877653 22345666665332 22 2467888888765
No 189
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=85.74 E-value=5.6 Score=35.31 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=56.3
Q ss_pred ccccCchHHHHHH-HHHHHhcCC-CeEEEEeccHH----HHHHHHHHHHhcC--CeEEEEECCCCHHHHHHHHHHhccCC
Q psy13224 33 IQYDCGKLQSLDV-ILRKLKAGG-HRVLIFTQMTR----MLDVLEAFLNFHG--HIYLRLDGTTKVDQRQVLMERFNMDA 104 (160)
Q Consensus 33 ~~~~~~K~~~l~~-ll~~~~~~~-~k~lif~~~~~----~~~~l~~~l~~~~--~~~~~~~g~~~~~~r~~~~~~f~~~~ 104 (160)
..++|+|.....- +++.+.... .+.|++..++. ..+.+.+.....+ +.+..++|..++++|..++ ..
T Consensus 92 TgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~-----~~ 166 (851)
T COG1205 92 TGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAII-----RN 166 (851)
T ss_pred CCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHH-----hC
Confidence 3446889876544 445444333 36788888766 4666777777666 8899999999999987555 34
Q ss_pred CceEEEEecccccc
Q psy13224 105 RIFCFILSTRSGGV 118 (160)
Q Consensus 105 ~~~vll~~~~~~~~ 118 (160)
...|++.++++.-.
T Consensus 167 pp~IllTNpdMLh~ 180 (851)
T COG1205 167 PPDILLTNPDMLHY 180 (851)
T ss_pred CCCEEEeCHHHHHH
Confidence 55678888887653
No 190
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=85.71 E-value=10 Score=26.76 Aligned_cols=94 Identities=17% Similarity=0.194 Sum_probs=57.2
Q ss_pred cccCchHHH-HHHHHHHHhcC----CCeEEEEeccHHHHHHHHHHHH----hcCCeEEEEECCCCHHHHHHHHHHhccCC
Q psy13224 34 QYDCGKLQS-LDVILRKLKAG----GHRVLIFTQMTRMLDVLEAFLN----FHGHIYLRLDGTTKVDQRQVLMERFNMDA 104 (160)
Q Consensus 34 ~~~~~K~~~-l~~ll~~~~~~----~~k~lif~~~~~~~~~l~~~l~----~~~~~~~~~~g~~~~~~r~~~~~~f~~~~ 104 (160)
+++++|... +..++..+... +.+++|.+.....+......++ ..++.+..++|+.+..+..... ..
T Consensus 44 ~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 118 (203)
T cd00268 44 QTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL-----KR 118 (203)
T ss_pred CCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh-----cC
Confidence 356789654 55555555443 4589999998876665544443 3478888999988876554333 23
Q ss_pred CceEEEEecccc-----ccccccccCCEEEEeC
Q psy13224 105 RIFCFILSTRSG-----GVGINLTGADTVVFYD 132 (160)
Q Consensus 105 ~~~vll~~~~~~-----~~Gldl~~~~~vi~~~ 132 (160)
+..+++++++.. ..-.++.+...+|+=+
T Consensus 119 ~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE 151 (203)
T cd00268 119 GPHIVVATPGRLLDLLERGKLDLSKVKYLVLDE 151 (203)
T ss_pred CCCEEEEChHHHHHHHHcCCCChhhCCEEEEeC
Confidence 445566554321 2225566777777655
No 191
>KOG2340|consensus
Probab=85.32 E-value=4.3 Score=33.98 Aligned_cols=93 Identities=14% Similarity=0.213 Sum_probs=67.3
Q ss_pred CeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccc--cccccccCCEEEEeC
Q psy13224 55 HRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGG--VGINLTGADTVVFYD 132 (160)
Q Consensus 55 ~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~--~Gldl~~~~~vi~~~ 132 (160)
.-+|||..+=-..-.+...+++..+.++.++.-.+.+.-..+-.-|- .+...++| .|.-+- +-..+.++..||||.
T Consensus 553 s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~-qgr~~vlL-yTER~hffrR~~ikGVk~vVfYq 630 (698)
T KOG2340|consen 553 SGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFF-QGRKSVLL-YTERAHFFRRYHIKGVKNVVFYQ 630 (698)
T ss_pred CceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHH-hcCceEEE-EehhhhhhhhheecceeeEEEec
Confidence 36788887766677888999999999988888777776666667775 34445444 444332 567789999999999
Q ss_pred CCCCcChhhHHHHHHHh
Q psy13224 133 SDWNPTMDAQAQDRCHR 149 (160)
Q Consensus 133 ~~~~~~~~~Q~~gR~~R 149 (160)
||-+|--|---+.=..|
T Consensus 631 pP~~P~FYsEiinm~~k 647 (698)
T KOG2340|consen 631 PPNNPHFYSEIINMSDK 647 (698)
T ss_pred CCCCcHHHHHHHhhhhh
Confidence 99999777544443333
No 192
>PRK13766 Hef nuclease; Provisional
Probab=85.31 E-value=12 Score=32.60 Aligned_cols=95 Identities=15% Similarity=0.244 Sum_probs=59.0
Q ss_pred ccccCchHHHHHHHHHHH-hcCCCeEEEEeccHHHHHHHHHHHHhc-C---CeEEEEECCCCHHHHHHHHHHhccCCCce
Q psy13224 33 IQYDCGKLQSLDVILRKL-KAGGHRVLIFTQMTRMLDVLEAFLNFH-G---HIYLRLDGTTKVDQRQVLMERFNMDARIF 107 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~-~~~~~k~lif~~~~~~~~~l~~~l~~~-~---~~~~~~~g~~~~~~r~~~~~~f~~~~~~~ 107 (160)
..++++|.....-++... ...+.++|+.+.+...+....+.++.. + .++..++|+.+..+|...... ..
T Consensus 36 ~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~------~~ 109 (773)
T PRK13766 36 LPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEK------AK 109 (773)
T ss_pred cCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhC------CC
Confidence 556789997544444332 345679999999877765555555542 3 378889999998877654422 24
Q ss_pred EEEEeccccc-----cccccccCCEEEEeCC
Q psy13224 108 CFILSTRSGG-----VGINLTGADTVVFYDS 133 (160)
Q Consensus 108 vll~~~~~~~-----~Gldl~~~~~vi~~~~ 133 (160)
++++++..+. .-+++.+.+.+|+-+-
T Consensus 110 iiv~T~~~l~~~l~~~~~~~~~~~liVvDEa 140 (773)
T PRK13766 110 VIVATPQVIENDLIAGRISLEDVSLLIFDEA 140 (773)
T ss_pred EEEECHHHHHHHHHcCCCChhhCcEEEEECC
Confidence 5665554332 2344556677776653
No 193
>PF13245 AAA_19: Part of AAA domain
Probab=85.18 E-value=3.8 Score=24.70 Aligned_cols=41 Identities=29% Similarity=0.370 Sum_probs=34.6
Q ss_pred cccCchHHHHHHHHHHHhcC----CCeEEEEeccHHHHHHHHHHH
Q psy13224 34 QYDCGKLQSLDVILRKLKAG----GHRVLIFTQMTRMLDVLEAFL 74 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~----~~k~lif~~~~~~~~~l~~~l 74 (160)
..+++|...+.+++..+... ++++++.+.....++.+.+.+
T Consensus 18 ~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 18 PPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 34689999999998888754 779999999999999998887
No 194
>PRK09401 reverse gyrase; Reviewed
Probab=84.20 E-value=16 Score=33.70 Aligned_cols=99 Identities=15% Similarity=0.094 Sum_probs=62.0
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc----CCeEEEEECCC--CHHHHHHHHHHhccCCCc
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH----GHIYLRLDGTT--KVDQRQVLMERFNMDARI 106 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~----~~~~~~~~g~~--~~~~r~~~~~~f~~~~~~ 106 (160)
.+++++|.....-++..+...+.+++|.+.+.+.+..+.+.++.. ++.+..+.|+. +.+++......+. .+..
T Consensus 102 ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~-~~~~ 180 (1176)
T PRK09401 102 APTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLK-EGDF 180 (1176)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHh-cCCC
Confidence 466789997655444444455789999999999877777666643 55555555543 4566776777764 3345
Q ss_pred eEEEEeccccccc---cccccCCEEEEeC
Q psy13224 107 FCFILSTRSGGVG---INLTGADTVVFYD 132 (160)
Q Consensus 107 ~vll~~~~~~~~G---ldl~~~~~vi~~~ 132 (160)
.++++++.....- ++...++.+|.=+
T Consensus 181 ~IlV~Tp~rL~~~~~~l~~~~~~~lVvDE 209 (1176)
T PRK09401 181 DILVTTSQFLSKNFDELPKKKFDFVFVDD 209 (1176)
T ss_pred CEEEECHHHHHHHHHhccccccCEEEEEC
Confidence 5666665444332 3334466666544
No 195
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=84.06 E-value=2.4 Score=25.99 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=30.7
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCC
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTK 89 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~ 89 (160)
..++++++||+...........|+..|+.+..++|+..
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 44678999998766677778888889998888999875
No 196
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=83.90 E-value=7.9 Score=23.92 Aligned_cols=58 Identities=19% Similarity=0.110 Sum_probs=39.6
Q ss_pred CCeEEEEec------cHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe
Q psy13224 54 GHRVLIFTQ------MTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS 112 (160)
Q Consensus 54 ~~k~lif~~------~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~ 112 (160)
..+++||+. ++..+....+.|...++++..++=....+.+..+.+.-. ......+++.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g-~~tvP~vfi~ 70 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSN-WPTFPQLYVN 70 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhC-CCCCCEEEEC
Confidence 359999986 677888999999999999988886666555554444332 2333334443
No 197
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=83.04 E-value=4.1 Score=32.30 Aligned_cols=64 Identities=17% Similarity=-0.019 Sum_probs=54.2
Q ss_pred CccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc--CCeEEEEECCCCHHHH
Q psy13224 30 PRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDGTTKVDQR 93 (160)
Q Consensus 30 ~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~~~~r 93 (160)
......+++|.+.+.+-++...+.|..+.|-+...+.+-.|+..|+.. +.....+||+.++.-|
T Consensus 120 lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~fr 185 (441)
T COG4098 120 LVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSYFR 185 (441)
T ss_pred EEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchhcc
Confidence 334556789999999999999999999999999999999999999875 6778889998875543
No 198
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=82.58 E-value=23 Score=30.35 Aligned_cols=94 Identities=13% Similarity=0.149 Sum_probs=58.0
Q ss_pred cccCchHHHHH-HHHHHHhc--CCCeEEEEeccHHHHHHHHHHHHh-----cCCeEEEEECCCCHHHHHHHHHHhccCCC
Q psy13224 34 QYDCGKLQSLD-VILRKLKA--GGHRVLIFTQMTRMLDVLEAFLNF-----HGHIYLRLDGTTKVDQRQVLMERFNMDAR 105 (160)
Q Consensus 34 ~~~~~K~~~l~-~ll~~~~~--~~~k~lif~~~~~~~~~l~~~l~~-----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 105 (160)
++.++|...+. -++..+.. .+.++||.+.+.+.+..+.+.+.. .++.++.++|+.+.......+ ..+
T Consensus 51 pTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l-----~~~ 125 (629)
T PRK11634 51 QTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL-----RQG 125 (629)
T ss_pred CCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh-----cCC
Confidence 45789987643 33444322 234899999999877766665543 278889999998765543333 234
Q ss_pred ceEEEEecccc----c-cccccccCCEEEEeC
Q psy13224 106 IFCFILSTRSG----G-VGINLTGADTVVFYD 132 (160)
Q Consensus 106 ~~vll~~~~~~----~-~Gldl~~~~~vi~~~ 132 (160)
..+++.++... . ..+++.++..+|+=+
T Consensus 126 ~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDE 157 (629)
T PRK11634 126 PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDE 157 (629)
T ss_pred CCEEEECHHHHHHHHHcCCcchhhceEEEecc
Confidence 45566554322 2 235677777777644
No 199
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=82.50 E-value=2.4 Score=28.74 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHh
Q psy13224 40 LQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNF 76 (160)
Q Consensus 40 ~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~ 76 (160)
...+.+|+++....|.+++|+|...+.++.|-+.|=.
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~ 51 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWT 51 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHC
Confidence 5888999999999999999999999998888888743
No 200
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=81.82 E-value=8.1 Score=22.51 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=39.9
Q ss_pred EEEEe-ccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecc
Q psy13224 57 VLIFT-QMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTR 114 (160)
Q Consensus 57 ~lif~-~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~ 114 (160)
+.+|+ .++..+......|+..++++..++-...++.+..+...........++++.-.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCE
Confidence 55666 45667888999999999999999888876667666655542214444555433
No 201
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=81.77 E-value=6.2 Score=33.80 Aligned_cols=53 Identities=26% Similarity=0.306 Sum_probs=45.7
Q ss_pred ccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECC
Q psy13224 35 YDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGT 87 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~ 87 (160)
.+++|...+.+++..+...|.++++.+.+...++.+.+.|...+.+++.+...
T Consensus 182 PGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~vvRlg~~ 234 (637)
T TIGR00376 182 PGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQKIVRLGHP 234 (637)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCcEEEeCCc
Confidence 35789999999999888888899999999999999999999878887776553
No 202
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=81.03 E-value=16 Score=25.55 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=51.3
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc--CCeEEE-EECCCCHHHHHHHHHHhccCCCceEEEE
Q psy13224 38 GKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH--GHIYLR-LDGTTKVDQRQVLMERFNMDARIFCFIL 111 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~--~~~~~~-~~g~~~~~~r~~~~~~f~~~~~~~vll~ 111 (160)
+=.+.+..+++.....+.++.++-...+.++.+.+.|++. ++..+- .+|.....+...+++.-+. .+..++++
T Consensus 30 ~g~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~-~~pdiv~v 105 (171)
T cd06533 30 TGSDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINA-SGADILFV 105 (171)
T ss_pred CcHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHH-cCCCEEEE
Confidence 3456777788776666778889999999999888888876 677665 6777776666666666663 33344444
No 203
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=80.58 E-value=22 Score=30.00 Aligned_cols=82 Identities=10% Similarity=0.077 Sum_probs=57.8
Q ss_pred ccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEE
Q psy13224 31 RLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFI 110 (160)
Q Consensus 31 ~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll 110 (160)
...+++++|..... +-.+. .+..++|.+.....+..-.+.|...|+.+..+++..+..++........ .+...+++
T Consensus 33 v~~PTG~GKTl~y~--lpal~-~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~-~~~~~il~ 108 (591)
T TIGR01389 33 VVMPTGGGKSLCYQ--VPALL-LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALV-NGELKLLY 108 (591)
T ss_pred EEcCCCccHhHHHH--HHHHH-cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh-CCCCCEEE
Confidence 34566789987642 22222 3457788899888777667778888999999999999998888877775 34455666
Q ss_pred Eecccc
Q psy13224 111 LSTRSG 116 (160)
Q Consensus 111 ~~~~~~ 116 (160)
+++...
T Consensus 109 ~tpe~l 114 (591)
T TIGR01389 109 VAPERL 114 (591)
T ss_pred EChhHh
Confidence 665543
No 204
>PRK10824 glutaredoxin-4; Provisional
Probab=80.50 E-value=14 Score=24.34 Aligned_cols=67 Identities=10% Similarity=0.104 Sum_probs=42.5
Q ss_pred HHHHHhcCCCeEEEEec------cHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecc
Q psy13224 46 ILRKLKAGGHRVLIFTQ------MTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTR 114 (160)
Q Consensus 46 ll~~~~~~~~k~lif~~------~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~ 114 (160)
.++.+.+ ..+|+||+. ++-.+....+.|...++.+..++=....+.|.. +..+...+....+++.-.
T Consensus 7 ~v~~~I~-~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~-l~~~sg~~TVPQIFI~G~ 79 (115)
T PRK10824 7 KIQRQIA-ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAE-LPKYANWPTFPQLWVDGE 79 (115)
T ss_pred HHHHHHh-cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHH-HHHHhCCCCCCeEEECCE
Confidence 3444433 359999987 577888999999999888777766555554554 444433344444444433
No 205
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=80.43 E-value=17 Score=25.44 Aligned_cols=74 Identities=15% Similarity=0.222 Sum_probs=52.6
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc--CCeEE-EEECCCCHHHHHHHHHHhccCCCceEEEEe
Q psy13224 38 GKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH--GHIYL-RLDGTTKVDQRQVLMERFNMDARIFCFILS 112 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~--~~~~~-~~~g~~~~~~r~~~~~~f~~~~~~~vll~~ 112 (160)
+=.+.+..+++.....+.++-++-...+.++.+...|++. ++.++ ..+|..+.++...+++.-+. .+..++++.
T Consensus 32 ~g~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~-~~pdiv~vg 108 (172)
T PF03808_consen 32 TGSDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINA-SGPDIVFVG 108 (172)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHH-cCCCEEEEE
Confidence 4566777778766666778888888899999999999887 66655 45555667777888877773 344444443
No 206
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=80.06 E-value=18 Score=25.55 Aligned_cols=121 Identities=12% Similarity=0.064 Sum_probs=75.0
Q ss_pred hhhhhhcCCCCccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHH
Q psy13224 20 TSAMCTQFPDPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMER 99 (160)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~ 99 (160)
+.....++++.-+......=...+.+.+.++++.|-+++|++|..+ ..+....+..|+++..--+.-....-.+++++
T Consensus 28 ikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e--~RV~~~~~~l~v~fi~~A~KP~~~~fr~Al~~ 105 (175)
T COG2179 28 IKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNNKE--SRVARAAEKLGVPFIYRAKKPFGRAFRRALKE 105 (175)
T ss_pred CcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCCCH--HHHHhhhhhcCCceeecccCccHHHHHHHHHH
Confidence 3444555666666555555566777888888888999999999555 57777777778887555555555666788888
Q ss_pred hccCCCceEEEE---eccccccccccccCCEEEEeCCCCCcChhhHHHH
Q psy13224 100 FNMDARIFCFIL---STRSGGVGINLTGADTVVFYDSDWNPTMDAQAQD 145 (160)
Q Consensus 100 f~~~~~~~vll~---~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~g 145 (160)
++-+.+..+++. -||+. |-|..++.+| +..|--.+..+.-.++
T Consensus 106 m~l~~~~vvmVGDqL~TDVl--ggnr~G~~tI-lV~Pl~~~d~~~t~~n 151 (175)
T COG2179 106 MNLPPEEVVMVGDQLFTDVL--GGNRAGMRTI-LVEPLVAPDGWITKIN 151 (175)
T ss_pred cCCChhHEEEEcchhhhhhh--cccccCcEEE-EEEEeccccchhhhhh
Confidence 875554433332 12333 4555555544 4555444444443333
No 207
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=79.99 E-value=31 Score=28.12 Aligned_cols=95 Identities=14% Similarity=0.157 Sum_probs=57.9
Q ss_pred ccccCchHHHH-HHHHHHHhcC--------CCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHHH
Q psy13224 33 IQYDCGKLQSL-DVILRKLKAG--------GHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLMER 99 (160)
Q Consensus 33 ~~~~~~K~~~l-~~ll~~~~~~--------~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~~ 99 (160)
.+++++|.... .-++..+... ..++||.+.+.+.+..+.+.+.. .++....+.|+.+..+... .
T Consensus 45 apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~ 121 (456)
T PRK10590 45 AQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM---K 121 (456)
T ss_pred CCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHH---H
Confidence 34578998653 3334433221 12789999999887666655553 4678888899888655332 2
Q ss_pred hccCCCceEEEEecccc-----ccccccccCCEEEEeC
Q psy13224 100 FNMDARIFCFILSTRSG-----GVGINLTGADTVVFYD 132 (160)
Q Consensus 100 f~~~~~~~vll~~~~~~-----~~Gldl~~~~~vi~~~ 132 (160)
+ .+...++++++... ...+++.++..+|+=+
T Consensus 122 l--~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDE 157 (456)
T PRK10590 122 L--RGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDE 157 (456)
T ss_pred H--cCCCcEEEEChHHHHHHHHcCCcccccceEEEeec
Confidence 3 23455666665432 3455677787777754
No 208
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=79.92 E-value=27 Score=29.56 Aligned_cols=95 Identities=16% Similarity=0.181 Sum_probs=57.5
Q ss_pred ccccCchHHHHHH-HHHHHhc---------CCCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHH
Q psy13224 33 IQYDCGKLQSLDV-ILRKLKA---------GGHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLME 98 (160)
Q Consensus 33 ~~~~~~K~~~l~~-ll~~~~~---------~~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~ 98 (160)
..+.++|.....- ++..+.. .+.++||.+.+.+.+..+.+.+.. .++.+..++|+.+.......+.
T Consensus 53 ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~ 132 (572)
T PRK04537 53 AQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ 132 (572)
T ss_pred cCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh
Confidence 3456899866433 3333321 134899999999987666655543 4788899999988766554442
Q ss_pred HhccCCCceEEEEecccc----cc--ccccccCCEEEEeC
Q psy13224 99 RFNMDARIFCFILSTRSG----GV--GINLTGADTVVFYD 132 (160)
Q Consensus 99 ~f~~~~~~~vll~~~~~~----~~--Gldl~~~~~vi~~~ 132 (160)
.+..+++.++... .. .+++..+..+|+=+
T Consensus 133 -----~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 133 -----QGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred -----CCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 2344566554332 11 35566677666644
No 209
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=79.33 E-value=31 Score=27.75 Aligned_cols=95 Identities=12% Similarity=0.102 Sum_probs=58.1
Q ss_pred ccccCchHHHH-HHHHHHHhc------CCCeEEEEeccHHHHHHHHHHH----HhcCCeEEEEECCCCHHHHHHHHHHhc
Q psy13224 33 IQYDCGKLQSL-DVILRKLKA------GGHRVLIFTQMTRMLDVLEAFL----NFHGHIYLRLDGTTKVDQRQVLMERFN 101 (160)
Q Consensus 33 ~~~~~~K~~~l-~~ll~~~~~------~~~k~lif~~~~~~~~~l~~~l----~~~~~~~~~~~g~~~~~~r~~~~~~f~ 101 (160)
.+++++|.... .-++..+.. .+.++||.+.+.+.+..+.+.+ +..++++..++|+.+..++...+
T Consensus 45 apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l---- 120 (434)
T PRK11192 45 APTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF---- 120 (434)
T ss_pred CCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh----
Confidence 44578998653 333333321 1248999999888665554433 34588999999999877655444
Q ss_pred cCCCceEEEEecccc-----ccccccccCCEEEEeC
Q psy13224 102 MDARIFCFILSTRSG-----GVGINLTGADTVVFYD 132 (160)
Q Consensus 102 ~~~~~~vll~~~~~~-----~~Gldl~~~~~vi~~~ 132 (160)
.+...++++++... ...+++.++..+|+=+
T Consensus 121 -~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDE 155 (434)
T PRK11192 121 -SENQDIVVATPGRLLQYIKEENFDCRAVETLILDE 155 (434)
T ss_pred -cCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEEC
Confidence 23345566555322 2355677778777755
No 210
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=78.35 E-value=33 Score=27.54 Aligned_cols=95 Identities=19% Similarity=0.144 Sum_probs=58.2
Q ss_pred ccccCchHHHH-HHHHHHHhc---------CCCeEEEEeccHHHHHHHHHHHH----hcCCeEEEEECCCCHHHHHHHHH
Q psy13224 33 IQYDCGKLQSL-DVILRKLKA---------GGHRVLIFTQMTRMLDVLEAFLN----FHGHIYLRLDGTTKVDQRQVLME 98 (160)
Q Consensus 33 ~~~~~~K~~~l-~~ll~~~~~---------~~~k~lif~~~~~~~~~l~~~l~----~~~~~~~~~~g~~~~~~r~~~~~ 98 (160)
.+++++|.... .-++..+.. .+.++||-+.+.+.+..+.+.+. ..++.+..++|+.+.......
T Consensus 52 ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~-- 129 (423)
T PRK04837 52 AQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV-- 129 (423)
T ss_pred CCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH--
Confidence 34568897653 333333321 23479999999998776654443 348888889998775543332
Q ss_pred HhccCCCceEEEEecccc-----ccccccccCCEEEEeC
Q psy13224 99 RFNMDARIFCFILSTRSG-----GVGINLTGADTVVFYD 132 (160)
Q Consensus 99 ~f~~~~~~~vll~~~~~~-----~~Gldl~~~~~vi~~~ 132 (160)
. ..+..++++++... ...+++.++..+|+=+
T Consensus 130 -l--~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 130 -L--ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred -h--cCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 2 23445677666433 2346677888888755
No 211
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=77.64 E-value=29 Score=30.46 Aligned_cols=96 Identities=16% Similarity=0.059 Sum_probs=62.9
Q ss_pred ccccCchHHHH-HHHHHHHhc-CCCeEEEEeccHHHHHHHHHHHHhc---CCeEEEEECCCCHHHHHHHHHHhccCCCce
Q psy13224 33 IQYDCGKLQSL-DVILRKLKA-GGHRVLIFTQMTRMLDVLEAFLNFH---GHIYLRLDGTTKVDQRQVLMERFNMDARIF 107 (160)
Q Consensus 33 ~~~~~~K~~~l-~~ll~~~~~-~~~k~lif~~~~~~~~~l~~~l~~~---~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~ 107 (160)
.+++|+|.... .-++..+.. .+.++|+.+.+.+.+......++.. ++.+..++|..+.++|..+. .+..
T Consensus 58 apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~------~~~~ 131 (742)
T TIGR03817 58 TGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWAR------EHAR 131 (742)
T ss_pred CCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHh------cCCC
Confidence 44578898764 334444433 3458999999998877766666653 67888999999977764332 2345
Q ss_pred EEEEecccccccc---------ccccCCEEEEeCCC
Q psy13224 108 CFILSTRSGGVGI---------NLTGADTVVFYDSD 134 (160)
Q Consensus 108 vll~~~~~~~~Gl---------dl~~~~~vi~~~~~ 134 (160)
+++.+++....++ .+.++.++|+=+-.
T Consensus 132 IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah 167 (742)
T TIGR03817 132 YVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECH 167 (742)
T ss_pred EEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChh
Confidence 6777776654332 25678888886643
No 212
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=77.63 E-value=38 Score=28.90 Aligned_cols=80 Identities=14% Similarity=0.130 Sum_probs=56.1
Q ss_pred cccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEE
Q psy13224 32 LIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFIL 111 (160)
Q Consensus 32 ~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~ 111 (160)
..+++++|..... +-.+. .+..+||.+.....+....+.|...|+....+++..+.++......... .+...++++
T Consensus 46 ~apTGsGKTl~y~--lpal~-~~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~-~g~~~il~~ 121 (607)
T PRK11057 46 VMPTGGGKSLCYQ--IPALV-LDGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCR-TGQIKLLYI 121 (607)
T ss_pred EcCCCchHHHHHH--HHHHH-cCCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHh-CCCCcEEEE
Confidence 3556789976421 22222 2457889999888877777888888999999999999888877777665 344555665
Q ss_pred eccc
Q psy13224 112 STRS 115 (160)
Q Consensus 112 ~~~~ 115 (160)
++..
T Consensus 122 tPe~ 125 (607)
T PRK11057 122 APER 125 (607)
T ss_pred ChHH
Confidence 5543
No 213
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=77.57 E-value=4.8 Score=25.11 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=30.8
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCC
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTK 89 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~ 89 (160)
..+++++++|..-.........|...|+.+..+.|+..
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 45678999999876777888899999999777888765
No 214
>PTZ00110 helicase; Provisional
Probab=77.11 E-value=36 Score=28.59 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=56.4
Q ss_pred ccccCchHHHH-HHHHHHHhc-------CCCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSL-DVILRKLKA-------GGHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l-~~ll~~~~~-------~~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
..++|+|.... .-++..+.. .+..+||.+.+.+.+..+.+.+.. .++....+.|+.+.......+
T Consensus 174 ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l--- 250 (545)
T PTZ00110 174 AETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYAL--- 250 (545)
T ss_pred eCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHH---
Confidence 44568998752 233333221 245789999999887777666664 356777888887765433322
Q ss_pred ccCCCceEEEEecc----cccc-ccccccCCEEEEeC
Q psy13224 101 NMDARIFCFILSTR----SGGV-GINLTGADTVVFYD 132 (160)
Q Consensus 101 ~~~~~~~vll~~~~----~~~~-Gldl~~~~~vi~~~ 132 (160)
..+..++++++. .... -+++.++..+|+=+
T Consensus 251 --~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDE 285 (545)
T PTZ00110 251 --RRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDE 285 (545)
T ss_pred --HcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeeh
Confidence 223455666552 2222 34566777777654
No 215
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=76.86 E-value=10 Score=25.05 Aligned_cols=39 Identities=21% Similarity=0.138 Sum_probs=29.1
Q ss_pred cCCCeEEEEec-cHHHHHHHHHHHHhcCCeEEEEECCCCH
Q psy13224 52 AGGHRVLIFTQ-MTRMLDVLEAFLNFHGHIYLRLDGTTKV 90 (160)
Q Consensus 52 ~~~~k~lif~~-~~~~~~~l~~~l~~~~~~~~~~~g~~~~ 90 (160)
..++++++||+ .-.........|+..|+++..++|+.+.
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~a 123 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYKA 123 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHHH
Confidence 44679999997 3344555667888889998899998764
No 216
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=76.25 E-value=25 Score=24.95 Aligned_cols=64 Identities=8% Similarity=0.105 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc--CCeEEEEECCCCHHHHHHHHHHhcc
Q psy13224 39 KLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDGTTKVDQRQVLMERFNM 102 (160)
Q Consensus 39 K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~~~~r~~~~~~f~~ 102 (160)
=.+.+..+++.....+.++.++-..++.++...+.|++. ++.++-.+|-.++++...+++.-+.
T Consensus 33 G~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~ 98 (177)
T TIGR00696 33 GPDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIAR 98 (177)
T ss_pred hHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHH
Confidence 357777788766556668888888888888888888876 6776666888877766666666653
No 217
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=76.12 E-value=15 Score=26.13 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=35.2
Q ss_pred ccCchHHHHHHHHHHH--------hcCCCeEEEEeccHHHHHHHHHHHHh
Q psy13224 35 YDCGKLQSLDVILRKL--------KAGGHRVLIFTQMTRMLDVLEAFLNF 76 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~--------~~~~~k~lif~~~~~~~~~l~~~l~~ 76 (160)
.++||...+..++..+ ...+.++|+-+.+...++.+.+.|..
T Consensus 26 PGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 26 PGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp TTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 3679999999999888 56678999999999999998888877
No 218
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=75.96 E-value=21 Score=24.07 Aligned_cols=95 Identities=15% Similarity=0.148 Sum_probs=59.9
Q ss_pred ccccCchHHHHHHHHH-HHhcC-CCeEEEEeccHHHHHHHHHHHHhc----CCeEEEEECCCCHH-HHHHHHHHhccCCC
Q psy13224 33 IQYDCGKLQSLDVILR-KLKAG-GHRVLIFTQMTRMLDVLEAFLNFH----GHIYLRLDGTTKVD-QRQVLMERFNMDAR 105 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~-~~~~~-~~k~lif~~~~~~~~~l~~~l~~~----~~~~~~~~g~~~~~-~r~~~~~~f~~~~~ 105 (160)
.++++||.....-.+. .+.+. ..++++.+.+...+....+.+... +.....++|+.+.+ +....+ ..+
T Consensus 21 aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 95 (169)
T PF00270_consen 21 APTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL-----SNQ 95 (169)
T ss_dssp CSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH-----HTT
T ss_pred CCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccccccccccccccc-----ccc
Confidence 3456899988775443 34443 239999999988777766666553 56788889988855 333333 234
Q ss_pred ceEEEEecccccc-----ccccccCCEEEEeC
Q psy13224 106 IFCFILSTRSGGV-----GINLTGADTVVFYD 132 (160)
Q Consensus 106 ~~vll~~~~~~~~-----Gldl~~~~~vi~~~ 132 (160)
..+++++++.... .+++.+.+.+|+=+
T Consensus 96 ~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE 127 (169)
T PF00270_consen 96 ADILVTTPEQLLDLISNGKINISRLSLIVIDE 127 (169)
T ss_dssp SSEEEEEHHHHHHHHHTTSSTGTTESEEEEET
T ss_pred ccccccCcchhhccccccccccccceeeccCc
Confidence 5667777765432 23566777766633
No 219
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=75.85 E-value=13 Score=21.65 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=40.0
Q ss_pred eEEEEecc-HHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 56 RVLIFTQM-TRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 56 k~lif~~~-~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
++.+|+.. +..+......|+..++++..++=...+..+..+.+... .....++++.-...
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g-~~~vP~v~i~~~~i 62 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTG-SSVVPQIFFNEKLV 62 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhC-CCCcCEEEECCEEE
Confidence 56666654 56788999999999999998888777665555544432 34444455554433
No 220
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=75.79 E-value=29 Score=28.42 Aligned_cols=85 Identities=12% Similarity=0.121 Sum_probs=58.9
Q ss_pred CeEEEEeccHHHHHHHHHHHHhc--CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeC
Q psy13224 55 HRVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYD 132 (160)
Q Consensus 55 ~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~ 132 (160)
..+=+++++-.....+...+..+ |+.+++-.|....-+-...++.|.+++..+++++......
T Consensus 151 G~valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~d~~~~d~l~~l~~D~~t~~I~ly~E~~~--------------- 215 (447)
T TIGR02717 151 GGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKADIDESDLLEYLADDPDTKVILLYLEGIK--------------- 215 (447)
T ss_pred CCEEEEechHHHHHHHHHHHHhcCCCcceEEECCchhhCCHHHHHHHHhhCCCCCEEEEEecCCC---------------
Confidence 35778888888888888887776 5566666666655566778888988888888887755332
Q ss_pred CCCCcChhhHHHHHHHhcCCCCceEEeC
Q psy13224 133 SDWNPTMDAQAQDRCHRIGQTRDVHIYR 160 (160)
Q Consensus 133 ~~~~~~~~~Q~~gR~~R~gq~~~v~i~r 160 (160)
++..+..+..|+.| .|+|.+||
T Consensus 216 ---~~~~f~~aa~~a~~---~KPVv~~k 237 (447)
T TIGR02717 216 ---DGRKFLKTAREISK---KKPIVVLK 237 (447)
T ss_pred ---CHHHHHHHHHHHcC---CCCEEEEe
Confidence 34455566655543 67877765
No 221
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=75.33 E-value=14 Score=23.01 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=29.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCCH
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTKV 90 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~ 90 (160)
.+.++++||+...........|...|+. +..+.|+...
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~ 95 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDA 95 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHH
Confidence 3679999999876667777778888885 6788887664
No 222
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=75.24 E-value=7.6 Score=23.47 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=31.3
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCCH
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTKV 90 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~ 90 (160)
..+..+++||............|...|+. +..+.|+...
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~~ 93 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKE 93 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHHH
Confidence 34569999998877788888999999988 7788887753
No 223
>KOG0352|consensus
Probab=74.57 E-value=6.9 Score=32.03 Aligned_cols=63 Identities=8% Similarity=0.089 Sum_probs=52.6
Q ss_pred CeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhcc-CCCceEEEEeccccc
Q psy13224 55 HRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNM-DARIFCFILSTRSGG 117 (160)
Q Consensus 55 ~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~-~~~~~vll~~~~~~~ 117 (160)
.-.|||+........=.+.|....+++..+++.++..||.+++.+... ++..+++.+.+..++
T Consensus 62 gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AA 125 (641)
T KOG0352|consen 62 GITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAA 125 (641)
T ss_pred CeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhh
Confidence 388999998887777778888889999999999999999999998873 567788888877665
No 224
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=73.43 E-value=17 Score=23.28 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=34.5
Q ss_pred HHHHHHHHHHh-cCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCC
Q psy13224 41 QSLDVILRKLK-AGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTK 89 (160)
Q Consensus 41 ~~l~~ll~~~~-~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~ 89 (160)
..+.+++..+. ..++++++||+.-.........|...|++ +..+.|+..
T Consensus 64 ~~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 114 (118)
T cd01449 64 EELRALFAALGITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWS 114 (118)
T ss_pred HHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHH
Confidence 45555665442 24569999999866677788888888985 677777653
No 225
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=73.02 E-value=10 Score=23.45 Aligned_cols=38 Identities=18% Similarity=0.087 Sum_probs=28.7
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCC-eEEEEECCCC
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGH-IYLRLDGTTK 89 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~-~~~~~~g~~~ 89 (160)
..+.++++||+...........|...|+ ++..++|+..
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 4467899999886766777778888888 4677787764
No 226
>PRK06381 threonine synthase; Validated
Probab=72.95 E-value=34 Score=26.40 Aligned_cols=68 Identities=12% Similarity=0.032 Sum_probs=55.4
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
.+..|-|.+....++....+.|.+.||=+.+-++...++-.-...|+++.++-....+..+.+.++.|
T Consensus 41 nptGS~K~R~a~~~l~~a~~~g~~~lv~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l~~~ 108 (319)
T PRK06381 41 NPTGTQKDRIAEAHVRRAMRLGYSGITVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKY 108 (319)
T ss_pred CCccCcHHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHc
Confidence 45678899999999998888887777767777888888888888899988887776767777777777
No 227
>KOG0385|consensus
Probab=72.90 E-value=26 Score=30.93 Aligned_cols=83 Identities=17% Similarity=0.141 Sum_probs=63.0
Q ss_pred CchHHHHHHHHHHHhc---CCCeEEEEeccHHHHHHHHHHHHhc-CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe
Q psy13224 37 CGKLQSLDVILRKLKA---GGHRVLIFTQMTRMLDVLEAFLNFH-GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS 112 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~---~~~k~lif~~~~~~~~~l~~~l~~~-~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~ 112 (160)
-+|...-..+|..++. ..+..||-+.......|..++-+-. +++++.++|.. ++|......+...+...|++.+
T Consensus 197 LGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~~~~~Gdk--~eR~~~~r~~~~~~~fdV~iTs 274 (971)
T KOG0385|consen 197 LGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKRFTPSLNVVVYHGDK--EERAALRRDIMLPGRFDVCITS 274 (971)
T ss_pred cchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHHhCCCcceEEEeCCH--HHHHHHHHHhhccCCCceEeeh
Confidence 4688777777766643 3469999999888878877776654 88899999976 7888888888866778888888
Q ss_pred ccccccccc
Q psy13224 113 TRSGGVGIN 121 (160)
Q Consensus 113 ~~~~~~Gld 121 (160)
..++=.--+
T Consensus 275 YEi~i~dk~ 283 (971)
T KOG0385|consen 275 YEIAIKDKS 283 (971)
T ss_pred HHHHHhhHH
Confidence 887654444
No 228
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=72.72 E-value=7.6 Score=23.98 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=27.7
Q ss_pred CCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCC
Q psy13224 54 GHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTK 89 (160)
Q Consensus 54 ~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~ 89 (160)
+.++++||..-.........|...|+++..+.|+..
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 568999998765556667778888999767888764
No 229
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=71.83 E-value=58 Score=27.19 Aligned_cols=94 Identities=18% Similarity=0.215 Sum_probs=61.7
Q ss_pred cccCchHHH-HHHHHHHHh--cCCC-e-EEEEeccHHHHHHHHHHHHh----c-CCeEEEEECCCCHHHHHHHHHHhccC
Q psy13224 34 QYDCGKLQS-LDVILRKLK--AGGH-R-VLIFTQMTRMLDVLEAFLNF----H-GHIYLRLDGTTKVDQRQVLMERFNMD 103 (160)
Q Consensus 34 ~~~~~K~~~-l~~ll~~~~--~~~~-k-~lif~~~~~~~~~l~~~l~~----~-~~~~~~~~g~~~~~~r~~~~~~f~~~ 103 (160)
.++++|..+ +.-+|+.+. .... . .||.+.+.+.+..+.+.+.. . ++.++.+.|+.+...+...++.
T Consensus 74 ~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---- 149 (513)
T COG0513 74 QTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---- 149 (513)
T ss_pred CCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc----
Confidence 346788665 345555544 2222 2 89999999988887776664 2 5778999999997766644433
Q ss_pred CCceEEEEecc----ccccc-cccccCCEEEEeC
Q psy13224 104 ARIFCFILSTR----SGGVG-INLTGADTVVFYD 132 (160)
Q Consensus 104 ~~~~vll~~~~----~~~~G-ldl~~~~~vi~~~ 132 (160)
+..+++.++. ...+| +++.++.++|+-+
T Consensus 150 -~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDE 182 (513)
T COG0513 150 -GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDE 182 (513)
T ss_pred -CCCEEEECccHHHHHHHcCCcchhhcCEEEecc
Confidence 3555555442 34444 7788888888754
No 230
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=71.62 E-value=36 Score=25.99 Aligned_cols=68 Identities=15% Similarity=0.056 Sum_probs=56.0
Q ss_pred ccccCchHHHHHHHHHHHhcCCC----eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGH----RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~----k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
.+..|-|.+....++....+.+. +.+|=+..-++...++-.-...|+++.++-....+..+...++.|
T Consensus 33 nptGS~K~R~a~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~ 104 (290)
T TIGR01138 33 NPAGSVKDRPALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAY 104 (290)
T ss_pred CCCccHHHHHHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHc
Confidence 44578899998888888766664 557777778888899998889999999998888778888888888
No 231
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=70.26 E-value=56 Score=30.32 Aligned_cols=81 Identities=7% Similarity=0.026 Sum_probs=57.2
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhcc-CCCceEEEE
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNM-DARIFCFIL 111 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~-~~~~~vll~ 111 (160)
.+++++|-....--+ + ..+..+||.+.....+..-...|...++..+.+.|+.+..++...+..... .+...++++
T Consensus 482 mPTGSGKSLcYQLPA--L-~~~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyv 558 (1195)
T PLN03137 482 MPTGGGKSLTYQLPA--L-ICPGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYV 558 (1195)
T ss_pred cCCCccHHHHHHHHH--H-HcCCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 466788887632211 2 235689999998887654445566679999999999999888888877752 255677777
Q ss_pred ecccc
Q psy13224 112 STRSG 116 (160)
Q Consensus 112 ~~~~~ 116 (160)
++...
T Consensus 559 TPERL 563 (1195)
T PLN03137 559 TPEKV 563 (1195)
T ss_pred ChHHh
Confidence 77654
No 232
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=70.09 E-value=21 Score=22.53 Aligned_cols=48 Identities=13% Similarity=-0.058 Sum_probs=32.2
Q ss_pred HHHHHHHHhc-CCCeEEEEeccHHHHHHHHHHHHhcCCe--EEEEECCCCH
Q psy13224 43 LDVILRKLKA-GGHRVLIFTQMTRMLDVLEAFLNFHGHI--YLRLDGTTKV 90 (160)
Q Consensus 43 l~~ll~~~~~-~~~k~lif~~~~~~~~~l~~~l~~~~~~--~~~~~g~~~~ 90 (160)
+...+..+.. .+.++++||..-.........|...|++ +..+.|+...
T Consensus 54 l~~~~~~l~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~ 104 (109)
T cd01533 54 LVLRVGELAPDPRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQG 104 (109)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHH
Confidence 3334444422 3568999998765555567888888984 6778888754
No 233
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=69.34 E-value=12 Score=33.74 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=41.5
Q ss_pred HHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCC
Q psy13224 93 RQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT 153 (160)
Q Consensus 93 r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~ 153 (160)
+.....+|..+....-+|+-++..-+|.|-|..+++..--|-. .-.++|++.|+.|.-..
T Consensus 580 ~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYvDK~Lk-~H~L~QAisRtNR~~~~ 639 (962)
T COG0610 580 KKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYVDKPLK-YHNLIQAISRTNRVFPG 639 (962)
T ss_pred HhhhhhhhcCcCCCCCEEEEEccccccCCccccceEEeccccc-cchHHHHHHHhccCCCC
Confidence 3445555433333333555569999999999999987766544 44678999999997544
No 234
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=69.33 E-value=27 Score=26.24 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=43.9
Q ss_pred CCCCccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEE
Q psy13224 27 FPDPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLD 85 (160)
Q Consensus 27 ~~~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~ 85 (160)
+.+..+-..+-.|=..|..++..+....+++|...+..+.+..+.+.++..++.+.-+|
T Consensus 151 ~~~GIlft~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~ 209 (252)
T PF11019_consen 151 FYDGILFTGGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFH 209 (252)
T ss_pred eecCeEEeCCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEE
Confidence 34444444456799999999998765566777777778889999999999988875444
No 235
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=68.19 E-value=8.5 Score=25.12 Aligned_cols=39 Identities=10% Similarity=-0.008 Sum_probs=30.9
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCC--eEEEEECCCCH
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGH--IYLRLDGTTKV 90 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~--~~~~~~g~~~~ 90 (160)
..++++++||+...........|...|+ ++..++|+...
T Consensus 70 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~ 110 (122)
T cd01526 70 DKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKA 110 (122)
T ss_pred CCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHH
Confidence 3456899999887667778889999999 57888888754
No 236
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=67.83 E-value=41 Score=26.05 Aligned_cols=68 Identities=6% Similarity=-0.139 Sum_probs=53.4
Q ss_pred ccccCchHHHHHHHHHHHhcCC---CeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGG---HRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~---~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
.+..|-|.+....++....+.+ .+.+|=+..-++...++-.-...|+++.++-....+..+...+..|
T Consensus 26 nptGS~K~R~a~~~l~~a~~~g~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~l~~~ 96 (316)
T cd06448 26 QPSGSFKIRGIGHLCQKSAKQGLNECVHVVCSSGGNAGLAAAYAARKLGVPCTIVVPESTKPRVVEKLRDE 96 (316)
T ss_pred CCcCChHHHHHHHHHHHHHHhhcccCCeEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHc
Confidence 4457789998888887776665 4555555566788888888888999999998888878888888888
No 237
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=67.51 E-value=9.9 Score=23.72 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=27.8
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCC
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTK 89 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~ 89 (160)
..+.++++||+.-.........|...|++ +..+.|+..
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 34568999998755555667788888985 667887754
No 238
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=67.35 E-value=53 Score=25.00 Aligned_cols=75 Identities=12% Similarity=0.154 Sum_probs=50.8
Q ss_pred HHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc-CCeEEEEECCCCHHH-HHHHHHHhccCCCceEEEEeccccccccc
Q psy13224 45 VILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH-GHIYLRLDGTTKVDQ-RQVLMERFNMDARIFCFILSTRSGGVGIN 121 (160)
Q Consensus 45 ~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~-~~~~~~~~g~~~~~~-r~~~~~~f~~~~~~~vll~~~~~~~~Gld 121 (160)
++.+.+.+.|..+++.....+-++.+++.|+.. +..+.++.-+.+..+ ..++.+.-.......-+|+. .+|.|..
T Consensus 21 ~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVN--NAG~g~~ 97 (265)
T COG0300 21 ELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGPIDVLVN--NAGFGTF 97 (265)
T ss_pred HHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCCcccEEEE--CCCcCCc
Confidence 455666778999999999999999999999874 688888888877654 45555555433222224433 4454544
No 239
>PRK13767 ATP-dependent helicase; Provisional
Probab=67.28 E-value=63 Score=28.96 Aligned_cols=95 Identities=14% Similarity=0.077 Sum_probs=55.2
Q ss_pred ccccCchHHHH-HHHHHHHhc--------CCCeEEEEeccHHHHHHHHHHHH---------------h-cCCeEEEEECC
Q psy13224 33 IQYDCGKLQSL-DVILRKLKA--------GGHRVLIFTQMTRMLDVLEAFLN---------------F-HGHIYLRLDGT 87 (160)
Q Consensus 33 ~~~~~~K~~~l-~~ll~~~~~--------~~~k~lif~~~~~~~~~l~~~l~---------------~-~~~~~~~~~g~ 87 (160)
.+++|+|.... .-++..+.. .+-++|+.+.....+..+.+.|. . .++.+...+|+
T Consensus 54 APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gd 133 (876)
T PRK13767 54 SPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGD 133 (876)
T ss_pred CCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCC
Confidence 45578998763 334444322 12368888888776554443222 1 15678899999
Q ss_pred CCHHHHHHHHHHhccCCCceEEEEecccccccc-------ccccCCEEEEeC
Q psy13224 88 TKVDQRQVLMERFNMDARIFCFILSTRSGGVGI-------NLTGADTVVFYD 132 (160)
Q Consensus 88 ~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gl-------dl~~~~~vi~~~ 132 (160)
.+..++.+.+. ....++++++.....-+ .+.++..||+=+
T Consensus 134 t~~~~r~~~l~-----~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE 180 (876)
T PRK13767 134 TSSYEKQKMLK-----KPPHILITTPESLAILLNSPKFREKLRTVKWVIVDE 180 (876)
T ss_pred CCHHHHHHHHh-----CCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEec
Confidence 99888776553 22345666655432111 345677777644
No 240
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=67.27 E-value=53 Score=24.94 Aligned_cols=68 Identities=10% Similarity=0.007 Sum_probs=53.8
Q ss_pred ccccCchHHHHHHHHHHHhcCCC----eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGH----RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~----k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
....|-|.+....++..+.+.+. ..++-+..-+....+.-.-...|+++.++-....+..+...+..|
T Consensus 27 ~ptgS~K~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~ 98 (291)
T cd01561 27 NPGGSVKDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRAL 98 (291)
T ss_pred CCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHc
Confidence 44478899999999988876664 556667777888889988888999998888877667777777777
No 241
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=66.97 E-value=53 Score=24.81 Aligned_cols=67 Identities=12% Similarity=-0.037 Sum_probs=54.9
Q ss_pred cccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
+..|-|.+.+.-++....+.+.+.|+-+..-++...+.......|+++.++-....+..+...+..|
T Consensus 35 ptgs~K~R~a~~~l~~a~~~~~~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~ 101 (306)
T PF00291_consen 35 PTGSFKDRGAYYLLSRAKEKGGRTVVGASSGNHGRALAYAAARLGLKCTIVVPEDVSPEKLKQMRAL 101 (306)
T ss_dssp TTSBTHHHHHHHHHHHHHHTTTSEEEEESSSHHHHHHHHHHHHHTCEEEEEEETTSHHHHHHHHHHT
T ss_pred CcCCcccccchhhhhhccccccceeeeeccCCceehhhhhhhhccccceeeeccccccccccceeee
Confidence 3567899999999998777776766777777888889988888899998888777777777788777
No 242
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=66.79 E-value=42 Score=26.44 Aligned_cols=47 Identities=26% Similarity=0.395 Sum_probs=37.1
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEEC
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDG 86 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g 86 (160)
++-...+..+++++.+.|..++|.+...+ .+.+.|+..|+.+..+.+
T Consensus 10 p~hvhfFk~~I~eL~~~GheV~it~R~~~---~~~~LL~~yg~~y~~iG~ 56 (335)
T PF04007_consen 10 PAHVHFFKNIIRELEKRGHEVLITARDKD---ETEELLDLYGIDYIVIGK 56 (335)
T ss_pred chHHHHHHHHHHHHHhCCCEEEEEEeccc---hHHHHHHHcCCCeEEEcC
Confidence 45677788899999888999999997554 566777778999887755
No 243
>PRK11761 cysM cysteine synthase B; Provisional
Probab=66.37 E-value=57 Score=25.00 Aligned_cols=77 Identities=10% Similarity=0.008 Sum_probs=59.3
Q ss_pred cccccCchHHHHHHHHHHHhcCCC----eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCce
Q psy13224 32 LIQYDCGKLQSLDVILRKLKAGGH----RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIF 107 (160)
Q Consensus 32 ~~~~~~~K~~~l~~ll~~~~~~~~----k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~ 107 (160)
..++.|-|.+....++....+.+. +.+|=++.-++...++-.-...|+++.++-....+.++...++.| +-.
T Consensus 36 ~nptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~----GA~ 111 (296)
T PRK11761 36 NNPAGSVKDRPALSMIVQAEKRGEIKPGDTLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAY----GAE 111 (296)
T ss_pred cCCCCCchhHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHc----CCE
Confidence 355678899998888888766654 556667777888888888888999999888887778888888888 334
Q ss_pred EEEEe
Q psy13224 108 CFILS 112 (160)
Q Consensus 108 vll~~ 112 (160)
++++.
T Consensus 112 v~~~~ 116 (296)
T PRK11761 112 LILVP 116 (296)
T ss_pred EEEeC
Confidence 45554
No 244
>KOG0347|consensus
Probab=66.23 E-value=37 Score=28.93 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=40.0
Q ss_pred CCCe--EEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHHH
Q psy13224 53 GGHR--VLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLMER 99 (160)
Q Consensus 53 ~~~k--~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~~ 99 (160)
.+.+ .||++.+.+.+..+...|.. .++.++.|.|+++....+.++++
T Consensus 260 k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~ 312 (731)
T KOG0347|consen 260 KYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ 312 (731)
T ss_pred ccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc
Confidence 3446 89999999999888888876 49999999999999888888865
No 245
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=66.14 E-value=40 Score=23.16 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=36.3
Q ss_pred eEEEEecc-------HHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhc
Q psy13224 56 RVLIFTQM-------TRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFN 101 (160)
Q Consensus 56 k~lif~~~-------~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~ 101 (160)
+++||+.+ ...+.....+|+..++++..++=++..+.++++.+...
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g 53 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLG 53 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhC
Confidence 46777765 56788899999999999998888888777777766553
No 246
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=66.10 E-value=48 Score=26.03 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhcc-----CCCceEEEEe
Q psy13224 42 SLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNM-----DARIFCFILS 112 (160)
Q Consensus 42 ~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~-----~~~~~vll~~ 112 (160)
.+.++++ -..++|||.-.......-.+..|+.-|+.+..+.|....+.-.++...|.+ .++..+++++
T Consensus 67 ~~~eI~~---lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~ 139 (337)
T COG2247 67 VLDEIIE---LNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVY 139 (337)
T ss_pred HHHHHHh---hCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEe
Confidence 3444554 234699999988888888899999999999999998887777777777742 2445667766
No 247
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=65.59 E-value=1.3 Score=38.67 Aligned_cols=39 Identities=13% Similarity=-0.006 Sum_probs=33.3
Q ss_pred eccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCC
Q psy13224 112 STRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQ 152 (160)
Q Consensus 112 ~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq 152 (160)
....+++|.++..++..+.++.+|+| ..|++++.|++++
T Consensus 485 kn~~s~~~~~l~~~~~~~~~~LtgTP--len~l~eL~sl~~ 523 (866)
T COG0553 485 KNDQSSEGKALQFLKALNRLDLTGTP--LENRLGELWSLLQ 523 (866)
T ss_pred hhhhhHHHHHHHHHhhcceeeCCCCh--HhhhHHHHHHHHH
Confidence 44566778888888899999999999 5899999999876
No 248
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=65.46 E-value=80 Score=26.33 Aligned_cols=95 Identities=14% Similarity=0.094 Sum_probs=54.8
Q ss_pred ccccCchHHH-HHHHHHHHh---------cCCCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHH
Q psy13224 33 IQYDCGKLQS-LDVILRKLK---------AGGHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLME 98 (160)
Q Consensus 33 ~~~~~~K~~~-l~~ll~~~~---------~~~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~ 98 (160)
..++|+|... +.-++..+. ..+.++||.+.+.+.+..+.+.++. .++..+.+.|+.+..+...
T Consensus 165 ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~--- 241 (518)
T PLN00206 165 ADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLY--- 241 (518)
T ss_pred ecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHH---
Confidence 4556899864 333343321 1345899999999887666555543 2566677777766544322
Q ss_pred HhccCCCceEEEEecccc-----ccccccccCCEEEEeC
Q psy13224 99 RFNMDARIFCFILSTRSG-----GVGINLTGADTVVFYD 132 (160)
Q Consensus 99 ~f~~~~~~~vll~~~~~~-----~~Gldl~~~~~vi~~~ 132 (160)
.. ..+..++++++... ..++++.++..+|+=+
T Consensus 242 ~l--~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDE 278 (518)
T PLN00206 242 RI--QQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDE 278 (518)
T ss_pred Hh--cCCCCEEEECHHHHHHHHHcCCccchheeEEEeec
Confidence 22 23345555554321 2356777777777755
No 249
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=65.38 E-value=14 Score=23.12 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=27.9
Q ss_pred CCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCC
Q psy13224 54 GHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTK 89 (160)
Q Consensus 54 ~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~ 89 (160)
++.+++||............|...|+. +..+.|+..
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 568999998766666777788888886 667888764
No 250
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=65.25 E-value=18 Score=23.01 Aligned_cols=39 Identities=8% Similarity=-0.069 Sum_probs=29.5
Q ss_pred cCCCeEEEEeccH--HHHHHHHHHHHhcCCeEEEEECCCCH
Q psy13224 52 AGGHRVLIFTQMT--RMLDVLEAFLNFHGHIYLRLDGTTKV 90 (160)
Q Consensus 52 ~~~~k~lif~~~~--~~~~~l~~~l~~~~~~~~~~~g~~~~ 90 (160)
..+.++++||+.. .........|...|+++..+.|+...
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~~ 102 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLDW 102 (110)
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHHH
Confidence 4567999999864 24566777888889988888887753
No 251
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=65.02 E-value=9.8 Score=23.58 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=28.5
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCC
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTK 89 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~ 89 (160)
..+.++++||............|...|+. +..+.|+..
T Consensus 59 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~ 97 (103)
T cd01447 59 AEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFK 97 (103)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHH
Confidence 44669999998765566777888888876 667877764
No 252
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=64.95 E-value=19 Score=22.25 Aligned_cols=39 Identities=10% Similarity=0.045 Sum_probs=29.3
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCC-eEEEEECCCCH
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGH-IYLRLDGTTKV 90 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~-~~~~~~g~~~~ 90 (160)
..++++++||..-.........|.+.|+ ++..+.|+...
T Consensus 52 ~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~ 91 (99)
T cd01527 52 VGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDA 91 (99)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHH
Confidence 4457999999987666777888888777 56678887643
No 253
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=64.69 E-value=26 Score=29.86 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=59.5
Q ss_pred cccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEE
Q psy13224 32 LIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFIL 111 (160)
Q Consensus 32 ~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~ 111 (160)
+.+++++|-.- .++=. +...| -+||.+.-...+.-=.+.|...|+.++.+++.++.++|..+..... .+..+.+.+
T Consensus 38 vmPTGgGKSlC-yQiPA-ll~~G-~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~-~g~~klLyi 113 (590)
T COG0514 38 VMPTGGGKSLC-YQIPA-LLLEG-LTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLK-SGQLKLLYI 113 (590)
T ss_pred EccCCCCcchH-hhhHH-HhcCC-CEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHh-cCceeEEEE
Confidence 34555566432 22222 22234 7888898887777777888889999999999999999999999996 556777888
Q ss_pred eccccc
Q psy13224 112 STRSGG 117 (160)
Q Consensus 112 ~~~~~~ 117 (160)
++.-..
T Consensus 114 sPErl~ 119 (590)
T COG0514 114 SPERLM 119 (590)
T ss_pred Cchhhc
Confidence 876543
No 254
>KOG1133|consensus
Probab=64.59 E-value=1e+02 Score=27.15 Aligned_cols=79 Identities=15% Similarity=0.117 Sum_probs=49.1
Q ss_pred CCeEEEEeccHHHHHHHHHHHHhcCC-------eEEEEECCCCHHHHHHHHHHhcc---CCCceEEEEe--ccccccccc
Q psy13224 54 GHRVLIFTQMTRMLDVLEAFLNFHGH-------IYLRLDGTTKVDQRQVLMERFNM---DARIFCFILS--TRSGGVGIN 121 (160)
Q Consensus 54 ~~k~lif~~~~~~~~~l~~~l~~~~~-------~~~~~~g~~~~~~r~~~~~~f~~---~~~~~vll~~--~~~~~~Gld 121 (160)
.+=+++|..+-+....+....+..|+ +.+......+ -..++..|.. .+... +|++ ..-+++|+|
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~Ga-iLlaVVGGKlSEGIN 704 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGA-ILLAVVGGKLSEGIN 704 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCe-EEEEEeccccccccc
Confidence 34678888888888888777775443 3344444444 2345666652 12223 3333 234679999
Q ss_pred cc--cCCEEEEeCCCCC
Q psy13224 122 LT--GADTVVFYDSDWN 136 (160)
Q Consensus 122 l~--~~~~vi~~~~~~~ 136 (160)
+. =+.-|+....|+.
T Consensus 705 F~D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 705 FSDDLGRAVVVVGLPYP 721 (821)
T ss_pred cccccccEEEEeecCCC
Confidence 97 5778888888876
No 255
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=64.52 E-value=83 Score=27.76 Aligned_cols=65 Identities=12% Similarity=0.013 Sum_probs=42.7
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHH----HHHHHhcCCeEEEEECCCCHHHHHHHH
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVL----EAFLNFHGHIYLRLDGTTKVDQRQVLM 97 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l----~~~l~~~~~~~~~~~g~~~~~~r~~~~ 97 (160)
..++++|.....--+--..-.|..+.|-+.+...+... ....+..|+++..+.|+.+.++|....
T Consensus 76 m~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y 144 (745)
T TIGR00963 76 MKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAY 144 (745)
T ss_pred ecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhc
Confidence 45578897654322211123467899999887755444 444555699999999999987766544
No 256
>KOG1805|consensus
Probab=64.51 E-value=86 Score=28.58 Aligned_cols=61 Identities=26% Similarity=0.294 Sum_probs=49.3
Q ss_pred CCCCccccc--cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECC
Q psy13224 27 FPDPRLIQY--DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGT 87 (160)
Q Consensus 27 ~~~~~~~~~--~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~ 87 (160)
..++.++.. +++|...+..+++.+...|++||+-+.+.-.++-|...|...++.++.+...
T Consensus 684 aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~ 746 (1100)
T KOG1805|consen 684 AEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSE 746 (1100)
T ss_pred ccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCCc
Confidence 344444333 4689999999999999999999999998888999999999888887766543
No 257
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=64.30 E-value=46 Score=25.84 Aligned_cols=62 Identities=16% Similarity=0.007 Sum_probs=46.5
Q ss_pred CeEEEEeccHHHHHHHHHHHHhc--CCeEEEEECCC--CHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 55 HRVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDGTT--KVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 55 ~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g~~--~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
..+=+++++-.....+..++..+ |+..++-.|.. ..-+-...++.|.+++..+++++....+
T Consensus 151 G~ValiSQSG~l~~~l~~~~~~~giG~S~~VS~Gn~~~adv~~~d~L~yl~~Dp~T~~I~ly~E~~ 216 (300)
T PLN00125 151 GRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFVKDPQTEGIILIGEIG 216 (300)
T ss_pred CcEEEEeCCccHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhhCCCCcEEEEEeccC
Confidence 36778888888777888877766 55666667766 5566677888888888888888877653
No 258
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=64.07 E-value=88 Score=27.28 Aligned_cols=104 Identities=13% Similarity=0.106 Sum_probs=60.9
Q ss_pred HHHHHHHhcCCCeEEEEecc-------------HHHHHHHHHHHHhcCCeEEEEEC--------------------CCCH
Q psy13224 44 DVILRKLKAGGHRVLIFTQM-------------TRMLDVLEAFLNFHGHIYLRLDG--------------------TTKV 90 (160)
Q Consensus 44 ~~ll~~~~~~~~k~lif~~~-------------~~~~~~l~~~l~~~~~~~~~~~g--------------------~~~~ 90 (160)
.+.++.+...|.+++.++.. +..+...-+.|++.|+++..++| +.+|
T Consensus 414 ~~~~~~~a~~G~~~l~va~~~~~lG~i~l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~A~~~P 493 (679)
T PRK01122 414 DAAVDEVARKGGTPLVVAEDNRVLGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLAEATP 493 (679)
T ss_pred HHHHHHHHhCCCcEEEEEECCeEEEEEEEeccCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEEccCCH
Confidence 34444555567677766532 23455555677888998888777 4778
Q ss_pred HHHHHHHHHhccCCCceEEEEec--------------cccccccccc-cCCEEEEeCCCCCcChhhHHHHHHH
Q psy13224 91 DQRQVLMERFNMDARIFCFILST--------------RSGGVGINLT-GADTVVFYDSDWNPTMDAQAQDRCH 148 (160)
Q Consensus 91 ~~r~~~~~~f~~~~~~~vll~~~--------------~~~~~Gldl~-~~~~vi~~~~~~~~~~~~Q~~gR~~ 148 (160)
+++.+.++.+...+ ..|.++.- -+++.|-|.- .+..+|.+|...+.-...-.+||--
T Consensus 494 edK~~iV~~lQ~~G-~~VaMtGDGvNDAPALa~ADVGIAMgsGTdvAkeAADiVLldd~~s~Iv~av~~GR~~ 565 (679)
T PRK01122 494 EDKLALIRQEQAEG-RLVAMTGDGTNDAPALAQADVGVAMNSGTQAAKEAGNMVDLDSNPTKLIEVVEIGKQL 565 (679)
T ss_pred HHHHHHHHHHHHcC-CeEEEECCCcchHHHHHhCCEeEEeCCCCHHHHHhCCEEEeCCCHHHHHHHHHHHHHH
Confidence 88888888886332 22333221 1233555553 6667777775554444444555543
No 259
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=64.05 E-value=39 Score=24.78 Aligned_cols=76 Identities=13% Similarity=-0.031 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEE--EEE-CCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 40 LQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYL--RLD-GTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 40 ~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~--~~~-g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
-+.|.+++......++++++++... .-+.+.+.|.+.|+.+. ..+ ............+.+....-+.+++.|+..+
T Consensus 104 ~e~L~~~~~~~~~~~~~vL~~rg~~-~r~~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~i~f~S~~~~ 182 (240)
T PRK09189 104 GVRLAETVAAALAPTARLLYLAGRP-RAPVFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAILGGAPFDAVLLYSRVAA 182 (240)
T ss_pred HHHHHHHHHHhcCCCCcEEEeccCc-ccchhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHHhcCCCCEEEEeCHHHH
Confidence 4445555543334567888888754 34789999999887743 222 2222222334555565333445555555443
No 260
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=64.02 E-value=66 Score=27.89 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=45.3
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHH----HHHHHHHhcCCeEEEEECCCCHHHHHH
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLD----VLEAFLNFHGHIYLRLDGTTKVDQRQV 95 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~----~l~~~l~~~~~~~~~~~g~~~~~~r~~ 95 (160)
..++++|.....-.+-.....|..++|-+.+...+. ++...++..|+++..+.|+.++++|..
T Consensus 123 ~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~ 189 (656)
T PRK12898 123 MQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRA 189 (656)
T ss_pred eeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHH
Confidence 455788988766544444456789999999887654 444555557999999999988776654
No 261
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=63.99 E-value=22 Score=22.88 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=32.7
Q ss_pred HHHHHHHHH-hcCCCeEEEEecc-HHHHHHHHHHHHhcCCe-EEEEECCCCH
Q psy13224 42 SLDVILRKL-KAGGHRVLIFTQM-TRMLDVLEAFLNFHGHI-YLRLDGTTKV 90 (160)
Q Consensus 42 ~l~~ll~~~-~~~~~k~lif~~~-~~~~~~l~~~l~~~~~~-~~~~~g~~~~ 90 (160)
.+.+++... ...+..+++||.. ..........|...|++ +..+.|+...
T Consensus 66 ~~~~~~~~~~~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~ 117 (122)
T cd01448 66 EFAELLGSLGISNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQA 117 (122)
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHH
Confidence 444455432 2345689999987 35666677788888876 7778887653
No 262
>PHA02558 uvsW UvsW helicase; Provisional
Probab=63.99 E-value=75 Score=26.35 Aligned_cols=44 Identities=16% Similarity=0.091 Sum_probs=32.9
Q ss_pred ccccCchHHHHHHHHHHHhcCCC-eEEEEeccHHHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGH-RVLIFTQMTRMLDVLEAFLNF 76 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~-k~lif~~~~~~~~~l~~~l~~ 76 (160)
..++++|......+.....+.++ ++||.+++.+.+.-..+.+..
T Consensus 136 apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~ 180 (501)
T PHA02558 136 LPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVD 180 (501)
T ss_pred eCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHH
Confidence 55678999877766655444444 999999999988777777765
No 263
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=63.81 E-value=15 Score=22.93 Aligned_cols=37 Identities=5% Similarity=-0.014 Sum_probs=28.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCC
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTK 89 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~ 89 (160)
.+..+++||..-.........|...|++ +..+.|+..
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~ 102 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWL 102 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHH
Confidence 3568999999877777788888888985 566666653
No 264
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=63.45 E-value=30 Score=23.81 Aligned_cols=37 Identities=24% Similarity=0.199 Sum_probs=31.5
Q ss_pred hHH-HHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHH
Q psy13224 39 KLQ-SLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLN 75 (160)
Q Consensus 39 K~~-~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~ 75 (160)
++. .+..|+++....|.|++|-|......+.|-+.|=
T Consensus 13 ~~~~~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LW 50 (144)
T COG2927 13 TLLAAACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLW 50 (144)
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhh
Confidence 444 8889999989999999999999998888887774
No 265
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=63.11 E-value=6 Score=35.56 Aligned_cols=46 Identities=17% Similarity=0.060 Sum_probs=41.4
Q ss_pred ceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcC
Q psy13224 106 IFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIG 151 (160)
Q Consensus 106 ~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 151 (160)
..-+|++..+..+|-|.|++-.+.-+...-+...-.|-+||..|..
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~ 546 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLP 546 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceecc
Confidence 5558999999999999999999999998888888899999999974
No 266
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=62.81 E-value=14 Score=25.57 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=60.7
Q ss_pred ccCchHHH-HHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEec
Q psy13224 35 YDCGKLQS-LDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILST 113 (160)
Q Consensus 35 ~~~~K~~~-l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~ 113 (160)
.+++|... |-+++.+..+.+.++||-..+.-.++.+.+.|+...+. ++...-.. ..+ ++..+-+++.
T Consensus 13 pGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~---~~t~~~~~------~~~---g~~~i~vMc~ 80 (148)
T PF07652_consen 13 PGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVR---FHTNARMR------THF---GSSIIDVMCH 80 (148)
T ss_dssp TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEE---EESTTSS-------------SSSSEEEEEH
T ss_pred CCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcc---cCceeeec------ccc---CCCccccccc
Confidence 46788884 88899888888899999999999999999999855433 33222211 122 3333333443
Q ss_pred cc----cccccccccCCEEEEeCCCCCcChhhHHHHHHHhc
Q psy13224 114 RS----GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRI 150 (160)
Q Consensus 114 ~~----~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 150 (160)
.. ...|....+-+.||+-+--|.=..-+-..|.+...
T Consensus 81 at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~ 121 (148)
T PF07652_consen 81 ATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLREL 121 (148)
T ss_dssp HHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHh
Confidence 32 22366667777777776655433334455555544
No 267
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=62.24 E-value=38 Score=22.97 Aligned_cols=50 Identities=20% Similarity=0.116 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCC-eEEEEECCCCHH
Q psy13224 41 QSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGH-IYLRLDGTTKVD 91 (160)
Q Consensus 41 ~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~-~~~~~~g~~~~~ 91 (160)
..|.+.+..+ ..+.+++|+|............|...|+ ++..+.|+...-
T Consensus 37 ~~l~~~l~~l-~~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~aW 87 (145)
T cd01535 37 AQLAQALEKL-PAAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTAAW 87 (145)
T ss_pred HHHHHHHHhc-CCCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHHHH
Confidence 4445556553 3456899999987777777788888887 688899988644
No 268
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=61.68 E-value=33 Score=26.68 Aligned_cols=39 Identities=23% Similarity=0.163 Sum_probs=29.5
Q ss_pred CCCeEEEEec-cHHHHHHHHHHHHhcCCeEEEEECCCCHH
Q psy13224 53 GGHRVLIFTQ-MTRMLDVLEAFLNFHGHIYLRLDGTTKVD 91 (160)
Q Consensus 53 ~~~k~lif~~-~~~~~~~l~~~l~~~~~~~~~~~g~~~~~ 91 (160)
.+.++++||. .-.........|...|+.+..+.|+...-
T Consensus 73 ~~~~vvvyC~~gG~RS~~aa~~L~~~G~~v~~L~GG~~aw 112 (311)
T TIGR03167 73 GPPQPLLYCWRGGMRSGSLAWLLAQIGFRVPRLEGGYKAY 112 (311)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHcCCCEEEecChHHHH
Confidence 3446999995 33446677788888999999999987654
No 269
>PHA03371 circ protein; Provisional
Probab=61.54 E-value=7.9 Score=28.61 Aligned_cols=45 Identities=27% Similarity=0.406 Sum_probs=32.9
Q ss_pred ccccccccccCCEE-EEeCCCCCc-------------ChhhHHHHHHHhcCCCCceEEe
Q psy13224 115 SGGVGINLTGADTV-VFYDSDWNP-------------TMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 115 ~~~~Gldl~~~~~v-i~~~~~~~~-------------~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
.+++=+|||+.+.+ |+.|-+.+. ..+.|-|||++=+|..+.-.||
T Consensus 29 LaGR~vDLPgGde~~If~~~g~T~~~~g~f~~~g~~r~~~v~fIGRAya~g~~RkF~iy 87 (240)
T PHA03371 29 LAGRTVDLPGGDELRIFADCGTTTVNFGKFVRPGSSRLAYVKFIGRAYAIGSGRKFVIY 87 (240)
T ss_pred hcCcceecCCCCeEEEeccCCCCccceeeEecCCCCcceeeeeeehhhccCCCceEEEE
Confidence 45677788877777 665544433 3456899999999998887777
No 270
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=60.94 E-value=85 Score=26.36 Aligned_cols=96 Identities=15% Similarity=0.241 Sum_probs=60.7
Q ss_pred ccccccCchHHHHHHHHH-HHhcCCCeEEEEeccHHH----HHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCC
Q psy13224 31 RLIQYDCGKLQSLDVILR-KLKAGGHRVLIFTQMTRM----LDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDAR 105 (160)
Q Consensus 31 ~~~~~~~~K~~~l~~ll~-~~~~~~~k~lif~~~~~~----~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 105 (160)
..++++-+|.-.-.-++. .+...++|+|+-+.+.-. +..+.+.+....-..+.++|+.++++|......
T Consensus 34 vvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~------ 107 (542)
T COG1111 34 VVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAK------ 107 (542)
T ss_pred EEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhh------
Confidence 345666678765444444 444555688888877654 333444443334467899999999999876633
Q ss_pred ceEEEEecccc-----ccccccccCCEEEEeC
Q psy13224 106 IFCFILSTRSG-----GVGINLTGADTVVFYD 132 (160)
Q Consensus 106 ~~vll~~~~~~-----~~Gldl~~~~~vi~~~ 132 (160)
.+|++.++++. +-=+|+.++..+||-+
T Consensus 108 ~kVfvaTPQvveNDl~~Grid~~dv~~lifDE 139 (542)
T COG1111 108 KKVFVATPQVVENDLKAGRIDLDDVSLLIFDE 139 (542)
T ss_pred CCEEEeccHHHHhHHhcCccChHHceEEEech
Confidence 34566666543 2346778888888855
No 271
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=60.91 E-value=61 Score=28.98 Aligned_cols=111 Identities=13% Similarity=0.054 Sum_probs=59.0
Q ss_pred ccccCchHHHHHHHHHHHh--cCCCeEEEEe-ccHHHHHHHHHHHHh---------------------------cCCeEE
Q psy13224 33 IQYDCGKLQSLDVILRKLK--AGGHRVLIFT-QMTRMLDVLEAFLNF---------------------------HGHIYL 82 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~--~~~~k~lif~-~~~~~~~~l~~~l~~---------------------------~~~~~~ 82 (160)
..++++|...+.-.+..+. ....+.|||+ ...+.++-+.+.++. .++++.
T Consensus 38 apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 117 (844)
T TIGR02621 38 TPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAIS 117 (844)
T ss_pred cCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEE
Confidence 4778999986542222111 1223677877 666544433333221 147788
Q ss_pred EEECCCCHHHHHHHHHHhccCCCceEEEEecccccccc-c----------------cccCCEEEEeCCCCCcChhhHHHH
Q psy13224 83 RLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGI-N----------------LTGADTVVFYDSDWNPTMDAQAQD 145 (160)
Q Consensus 83 ~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gl-d----------------l~~~~~vi~~~~~~~~~~~~Q~~g 145 (160)
.+.|+.+..... ... +.+..|++.+.+....+. + +.+...+|+=+-.-... +...+-
T Consensus 118 ~l~GG~~~~~q~---~~l--~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEADLd~g-F~~~l~ 191 (844)
T TIGR02621 118 TLRGQFADNDEW---MLD--PHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAHLEPA-FQELLK 191 (844)
T ss_pred EEECCCChHHHH---Hhc--CCCCcEEEECHHHHcCCccccccccccccccchhhhhccceEEEEehhhhccc-cHHHHH
Confidence 899998854322 222 345566666665544333 1 45666676655553332 444555
Q ss_pred HHHh
Q psy13224 146 RCHR 149 (160)
Q Consensus 146 R~~R 149 (160)
.+.+
T Consensus 192 ~Il~ 195 (844)
T TIGR02621 192 QIMN 195 (844)
T ss_pred HHHH
Confidence 5544
No 272
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=60.88 E-value=71 Score=24.64 Aligned_cols=68 Identities=13% Similarity=0.024 Sum_probs=51.2
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
....|-|.+....++....+.+.+.||=+..-++...++-.-...|+++.++-....+..+...+..|
T Consensus 48 nptGS~K~R~a~~~l~~a~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~ 115 (324)
T cd01563 48 NPTGSFKDRGMTVAVSKAKELGVKAVACASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAY 115 (324)
T ss_pred CCcccHHHhhHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHc
Confidence 44567899999999988877766555555566777888888788899988777766666677777777
No 273
>PRK08329 threonine synthase; Validated
Probab=60.54 E-value=81 Score=24.78 Aligned_cols=68 Identities=15% Similarity=0.059 Sum_probs=56.2
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
.++.|-|.+...-++....+.|.+.+|-+++-++...++-.-...|+++.++-....+..+...+..|
T Consensus 82 nPtGSfKdRga~~~i~~a~~~g~~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~ 149 (347)
T PRK08329 82 QPTGSFKDRGTYVTVAKLKEEGINEVVIDSSGNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRL 149 (347)
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHc
Confidence 45568899999999988887787777888788888889988888999998888777777777778777
No 274
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=60.50 E-value=65 Score=23.62 Aligned_cols=67 Identities=12% Similarity=-0.070 Sum_probs=52.7
Q ss_pred cccCchHHHHHHHHHHHhcCC---CeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 34 QYDCGKLQSLDVILRKLKAGG---HRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~---~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
+..|-|.+...-++....+.+ .+.+|-+..-+....+.......|+++.++-....+..+...+..+
T Consensus 26 ptgS~K~R~a~~~l~~a~~~g~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~~~~~ 95 (244)
T cd00640 26 PTGSFKDRGALNLILLAEEEGKLPKGVIIESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRAL 95 (244)
T ss_pred CcCCcHHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHC
Confidence 346789999999998877666 4555555556778888888888999998888877777788788777
No 275
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=60.43 E-value=36 Score=22.89 Aligned_cols=49 Identities=10% Similarity=-0.004 Sum_probs=30.3
Q ss_pred HHHHHHHHHHh-cCCCeEEEEecc---HHHHHHHHHHHHhcCCe-EEEEECCCC
Q psy13224 41 QSLDVILRKLK-AGGHRVLIFTQM---TRMLDVLEAFLNFHGHI-YLRLDGTTK 89 (160)
Q Consensus 41 ~~l~~ll~~~~-~~~~k~lif~~~---~~~~~~l~~~l~~~~~~-~~~~~g~~~ 89 (160)
+.+.+++..+. ..+.++|+||.. ...+-.+.=.|+..|++ +.+++|+.+
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 45667776552 335689999964 22333444456666765 667888765
No 276
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=60.11 E-value=56 Score=23.72 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHH
Q psy13224 40 LQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQ 94 (160)
Q Consensus 40 ~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~ 94 (160)
.+...++.+.+...-++|-||.+. ..+.+.+.++..++.++-+||..+++.-.
T Consensus 39 ~~~a~~i~~~~~~~~~~VgVf~~~--~~~~i~~~~~~~~~d~vQLHG~e~~~~~~ 91 (207)
T PRK13958 39 ITQIKKLASAVPNHIDKVCVVVNP--DLTTIEHILSNTSINTIQLHGTESIDFIQ 91 (207)
T ss_pred HHHHHHHHHhCCCCCCEEEEEeCC--CHHHHHHHHHhCCCCEEEECCCCCHHHHH
Confidence 344455555433334589999874 45778888888899999999998866533
No 277
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=60.06 E-value=95 Score=25.42 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=56.7
Q ss_pred ccccCchHHH-HHHHHHHHhcC---------CCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHH
Q psy13224 33 IQYDCGKLQS-LDVILRKLKAG---------GHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLME 98 (160)
Q Consensus 33 ~~~~~~K~~~-l~~ll~~~~~~---------~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~ 98 (160)
..++|+|... +.-++..+... +.++||.+.+.+.+..+.+.+.. .++.+..++|+.+......
T Consensus 131 apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~--- 207 (475)
T PRK01297 131 AQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLK--- 207 (475)
T ss_pred CCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHH---
Confidence 3456889854 33344443322 34789999998877666555543 4788888999876544332
Q ss_pred HhccCCCceEEEEeccccc-----cccccccCCEEEEeC
Q psy13224 99 RFNMDARIFCFILSTRSGG-----VGINLTGADTVVFYD 132 (160)
Q Consensus 99 ~f~~~~~~~vll~~~~~~~-----~Gldl~~~~~vi~~~ 132 (160)
.+. .....+++++++... ..+.+.+...+|+=+
T Consensus 208 ~~~-~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDE 245 (475)
T PRK01297 208 QLE-ARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDE 245 (475)
T ss_pred HHh-CCCCCEEEECHHHHHHHHHcCCcccccCceEEech
Confidence 222 233455666655432 244566777777644
No 278
>PRK10329 glutaredoxin-like protein; Provisional
Probab=59.95 E-value=36 Score=20.56 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=32.1
Q ss_pred eEEEEe-ccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH
Q psy13224 56 RVLIFT-QMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLM 97 (160)
Q Consensus 56 k~lif~-~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~ 97 (160)
++.+|+ .++-.++.....|++.|+.+-.++-...++.+....
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~ 44 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLR 44 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHH
Confidence 567887 455568889999999999999888887766555443
No 279
>PRK05320 rhodanese superfamily protein; Provisional
Probab=59.76 E-value=17 Score=27.49 Aligned_cols=39 Identities=15% Similarity=0.085 Sum_probs=32.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCCHH
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTKVD 91 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~~ 91 (160)
.++++++||..-.........|...|+. +..+.|+....
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w 213 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKY 213 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHH
Confidence 4678999999877788888999999996 77889988653
No 280
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=59.69 E-value=43 Score=23.40 Aligned_cols=76 Identities=17% Similarity=0.203 Sum_probs=46.3
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCC----CHHHHHHHHHHhccCC--CceEE
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTT----KVDQRQVLMERFNMDA--RIFCF 109 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~----~~~~r~~~~~~f~~~~--~~~vl 109 (160)
+|+|...+.++++ ....+.++.|..+--.....=.+.++..+.....+.++. -..+-...+..+.... ....+
T Consensus 10 GsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~~~~~d~I 88 (178)
T PF02492_consen 10 GSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREYEERPDRI 88 (178)
T ss_dssp TSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCCHGC-SEE
T ss_pred CCCHHHHHHHHHH-HhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhcCCCcCEE
Confidence 5899999999997 456677777776644434444566677788888887743 1334455666665444 44445
Q ss_pred EEe
Q psy13224 110 ILS 112 (160)
Q Consensus 110 l~~ 112 (160)
++=
T Consensus 89 iIE 91 (178)
T PF02492_consen 89 IIE 91 (178)
T ss_dssp EEE
T ss_pred EEC
Confidence 553
No 281
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=59.30 E-value=18 Score=22.92 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCeEEEEeccHH-HHHHHHHHHHhcCCeE
Q psy13224 43 LDVILRKLKAGGHRVLIFTQMTR-MLDVLEAFLNFHGHIY 81 (160)
Q Consensus 43 l~~ll~~~~~~~~k~lif~~~~~-~~~~l~~~l~~~~~~~ 81 (160)
-.+.++.+.+.|.++++.+|... ....+.+.|+..|+..
T Consensus 19 a~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 19 AVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp HHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCC
Confidence 35567777778889999988764 4577888888888884
No 282
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=59.22 E-value=27 Score=21.66 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=23.3
Q ss_pred cCCCeEEEEeccHHHHHHHHH-----HHHhcCC-eEEEEECCCCH
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEA-----FLNFHGH-IYLRLDGTTKV 90 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~-----~l~~~~~-~~~~~~g~~~~ 90 (160)
..+..+++||+.......... .|...|+ ++..+.|+...
T Consensus 65 ~~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~ 109 (113)
T PF00581_consen 65 DKDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEA 109 (113)
T ss_dssp TTTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHH
T ss_pred cccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHH
Confidence 345578899943333222222 2777787 77888887653
No 283
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=58.93 E-value=79 Score=24.10 Aligned_cols=68 Identities=10% Similarity=-0.012 Sum_probs=53.2
Q ss_pred ccccCchHHHHHHHHHHHhcCCC----eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGH----RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~----k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
.++.|-|.+....++....+.+. ..+|-++.-+....++-.-...|+++.++-....+..+...++.|
T Consensus 31 nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~~~~~ 102 (298)
T TIGR01139 31 NPSGSVKDRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAY 102 (298)
T ss_pred CCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHHHHHc
Confidence 44568899999999888766654 556777777788888888888899998888877667777778777
No 284
>PLN02356 phosphateglycerate kinase
Probab=56.92 E-value=1.1e+02 Score=25.08 Aligned_cols=70 Identities=11% Similarity=-0.052 Sum_probs=57.2
Q ss_pred ccccccCchHHHHHHHHHHHhcCCCe----EEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 31 RLIQYDCGKLQSLDVILRKLKAGGHR----VLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 31 ~~~~~~~~K~~~l~~ll~~~~~~~~k----~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
...+..|-|.+....++....+.+.. +++.+++-++...++-.-...|+++.++-....+.++...++.|
T Consensus 76 ~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~VveaSSGN~g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~ 149 (423)
T PLN02356 76 FLNPGGSVKDRVAVKIIEEALESGQLFPGGVVTEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEAL 149 (423)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhCCccCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCCCcHHHHHHHHHc
Confidence 33555688999999898877665543 77777888888899999899999999998888888889999888
No 285
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=56.65 E-value=87 Score=23.90 Aligned_cols=68 Identities=12% Similarity=-0.009 Sum_probs=53.9
Q ss_pred ccccCchHHHHHHHHHHHhcCCC----eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGH----RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~----k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
.+..|-|.+....++....+.+. ..++=++.-++...+.-.-...|+++.++-....+..+...+..|
T Consensus 32 ~ptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~ 103 (299)
T TIGR01136 32 NPSGSVKDRIALSMIEDAEKRGLLKPGDTIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAY 103 (299)
T ss_pred CCCCCccHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHc
Confidence 44568899998888888766654 556777777888888888888899999888877777788888777
No 286
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=56.08 E-value=26 Score=21.25 Aligned_cols=46 Identities=20% Similarity=0.143 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCC
Q psy13224 43 LDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTK 89 (160)
Q Consensus 43 l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~ 89 (160)
+.+.+.. ...+.+++++|+...........|...|+. +..+.|+..
T Consensus 46 ~~~~~~~-~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~ 92 (96)
T cd01444 46 LDDWLGD-LDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFE 92 (96)
T ss_pred HHHHHhh-cCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHH
Confidence 3444443 245679999999777778888899988885 567777653
No 287
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=55.92 E-value=70 Score=22.56 Aligned_cols=57 Identities=23% Similarity=0.197 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCC--CeEEEEeccH--------HHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhcc
Q psy13224 42 SLDVILRKLKAGG--HRVLIFTQMT--------RMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNM 102 (160)
Q Consensus 42 ~l~~ll~~~~~~~--~k~lif~~~~--------~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~ 102 (160)
.+.+.++++++.+ ++++|+||.. ..+..+++.| |+++ ..|+..++-...++++.|..
T Consensus 63 ~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~l---gIpv-l~h~~kKP~~~~~i~~~~~~ 129 (168)
T PF09419_consen 63 EYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKAL---GIPV-LRHRAKKPGCFREILKYFKC 129 (168)
T ss_pred HHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhh---CCcE-EEeCCCCCccHHHHHHHHhh
Confidence 3444555555543 3799999973 3344455444 5663 44555555666778888853
No 288
>PRK14873 primosome assembly protein PriA; Provisional
Probab=55.55 E-value=46 Score=28.89 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=42.4
Q ss_pred HHHHHHHHhc--CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecc----ccccccccccCCEEEEeCC-------C
Q psy13224 68 DVLEAFLNFH--GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTR----SGGVGINLTGADTVVFYDS-------D 134 (160)
Q Consensus 68 ~~l~~~l~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~----~~~~Gldl~~~~~vi~~~~-------~ 134 (160)
+.+++.|.+. +.++..+++ +..++.|. ++ ..||+.|. ..+ | +.+-|..+|. +
T Consensus 441 er~eeeL~~~FP~~~V~r~d~-------d~~l~~~~--~~-~~IlVGTqgaepm~~-g----~~~lV~ildaD~~L~~pD 505 (665)
T PRK14873 441 RRTAEELGRAFPGVPVVTSGG-------DQVVDTVD--AG-PALVVATPGAEPRVE-G----GYGAALLLDAWALLGRQD 505 (665)
T ss_pred HHHHHHHHHHCCCCCEEEECh-------HHHHHhhc--cC-CCEEEECCCCccccc-C----CceEEEEEcchhhhcCCC
Confidence 4455555543 445555443 24677884 33 33677776 444 2 4556655553 2
Q ss_pred CC-----cChhhHHHHHHHhcCCCCceEE
Q psy13224 135 WN-----PTMDAQAQDRCHRIGQTRDVHI 158 (160)
Q Consensus 135 ~~-----~~~~~Q~~gR~~R~gq~~~v~i 158 (160)
+. ...+.|..||++|-+....|.|
T Consensus 506 fRA~Er~~qll~qvagragr~~~~G~V~i 534 (665)
T PRK14873 506 LRAAEDTLRRWMAAAALVRPRADGGQVVV 534 (665)
T ss_pred cChHHHHHHHHHHHHHhhcCCCCCCEEEE
Confidence 22 3334689999998766666654
No 289
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=54.89 E-value=80 Score=22.95 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHH
Q psy13224 40 LQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVL 96 (160)
Q Consensus 40 ~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~ 96 (160)
.....++.+.+...-.+|.||.+. ..+.+.+.++..++.++-+||..+++.-..+
T Consensus 41 ~~~a~~i~~~~~~~i~~VgVf~~~--~~~~i~~~~~~~~~d~vQLHg~e~~~~~~~l 95 (210)
T PRK01222 41 PEQAAELAAALPPFVKVVGVFVNA--SDEEIDEIVETVPLDLLQLHGDETPEFCRQL 95 (210)
T ss_pred HHHHHHHHHhCCCCCCEEEEEeCC--CHHHHHHHHHhcCCCEEEECCCCCHHHHHHH
Confidence 344455555433334688899874 4467788888889999999999887654333
No 290
>PF12622 NpwBP: mRNA biogenesis factor
Probab=54.66 E-value=6.9 Score=21.53 Aligned_cols=12 Identities=33% Similarity=0.897 Sum_probs=9.9
Q ss_pred EEEEeCCCCCcC
Q psy13224 127 TVVFYDSDWNPT 138 (160)
Q Consensus 127 ~vi~~~~~~~~~ 138 (160)
.-|+|||.||+.
T Consensus 3 kSiyydP~~NP~ 14 (48)
T PF12622_consen 3 KSIYYDPELNPL 14 (48)
T ss_pred cceecCCccCCC
Confidence 458999999975
No 291
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=54.18 E-value=95 Score=23.57 Aligned_cols=68 Identities=7% Similarity=-0.078 Sum_probs=50.9
Q ss_pred ccccCchHHHHHHHHHHHhcCC-CeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGG-HRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~-~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
.+..|-|.+....++..+.+.+ .+.||-+..-++...+.......|+++.++-....+.++...+..|
T Consensus 42 nptgS~Kdr~a~~~l~~~~~~~~~~~iv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~ 110 (304)
T cd01562 42 QKTGSFKIRGAYNKLLSLSEEERAKGVVAASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAY 110 (304)
T ss_pred CCcCCcHHHhHHHHHHhcCHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHc
Confidence 3456779998888887766544 3445555567788889999899999988887777777777778777
No 292
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=52.78 E-value=34 Score=20.89 Aligned_cols=36 Identities=11% Similarity=0.126 Sum_probs=25.2
Q ss_pred CCeEEEEecc--HHHHHHHHHHHHhcCCe-EEEEECCCC
Q psy13224 54 GHRVLIFTQM--TRMLDVLEAFLNFHGHI-YLRLDGTTK 89 (160)
Q Consensus 54 ~~k~lif~~~--~~~~~~l~~~l~~~~~~-~~~~~g~~~ 89 (160)
+.++++||+. ..........|...|+. +..+.|+..
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 5689999987 33345666778888874 566777764
No 293
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=52.40 E-value=40 Score=19.79 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=28.4
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCC
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTK 89 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~ 89 (160)
..+.++++||............|...|+. +..+.|+..
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 45679999998877778888888888654 556766654
No 294
>PRK07476 eutB threonine dehydratase; Provisional
Probab=52.20 E-value=74 Score=24.64 Aligned_cols=68 Identities=12% Similarity=-0.076 Sum_probs=50.9
Q ss_pred ccccCchHHHHHHHHHHHhcCCC-eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGH-RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~-k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
....|-|.+....++..+.+.+. +.||=+..-++...+.-.-...|+++.++-....+..+...++.|
T Consensus 44 nptGS~K~R~a~~~i~~a~~~~~~~gvv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~ 112 (322)
T PRK07476 44 QPTGSFKLRGATNALLSLSAQERARGVVTASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRAL 112 (322)
T ss_pred CCCCCchHHHHHHHHHhhhhhhhCCeEEEECCChHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHc
Confidence 44678899998888877766553 424444556777888888888899988888877777777778777
No 295
>COG1204 Superfamily II helicase [General function prediction only]
Probab=52.11 E-value=1e+02 Score=27.29 Aligned_cols=58 Identities=19% Similarity=0.141 Sum_probs=43.1
Q ss_pred ccccCchHHH-HHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHH---hcCCeEEEEECCCCH
Q psy13224 33 IQYDCGKLQS-LDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLN---FHGHIYLRLDGTTKV 90 (160)
Q Consensus 33 ~~~~~~K~~~-l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~---~~~~~~~~~~g~~~~ 90 (160)
.+++|+|... +..+++.+.+.+.|++--+..+..+....+.++ .-|+++...+|+...
T Consensus 54 aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~ 115 (766)
T COG1204 54 APTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDL 115 (766)
T ss_pred cCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCccc
Confidence 4557889775 455666666556799888888877666666555 679999999998873
No 296
>PRK10717 cysteine synthase A; Provisional
Probab=51.72 E-value=1.1e+02 Score=23.70 Aligned_cols=68 Identities=10% Similarity=-0.038 Sum_probs=53.7
Q ss_pred ccccCchHHHHHHHHHHHhcCCC----eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGH----RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~----k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
.+..|-|.+...-++....+.+. ..||=+..-++...++-.-...|+++.++-....+..+...++.|
T Consensus 38 nptGS~K~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~~~~~ 109 (330)
T PRK10717 38 NPGGSVKDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRAL 109 (330)
T ss_pred CCCCCchHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHc
Confidence 44567899999999888776654 456667777888888888888899998888877777788888888
No 297
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=51.29 E-value=34 Score=24.26 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=22.5
Q ss_pred CCCeEEEEeccHHH--HHHHHHHHHhcCCeEEEEE
Q psy13224 53 GGHRVLIFTQMTRM--LDVLEAFLNFHGHIYLRLD 85 (160)
Q Consensus 53 ~~~k~lif~~~~~~--~~~l~~~l~~~~~~~~~~~ 85 (160)
.-.+|++|+.+.+. +..+...|...|++++.+.
T Consensus 81 ~~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 81 ETDRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp TT-EEEEEES-S--HHHHHHHHHHHHHT--EEEEE
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEE
Confidence 34599999998775 5667888899999998887
No 298
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=50.90 E-value=55 Score=21.06 Aligned_cols=38 Identities=8% Similarity=-0.047 Sum_probs=28.2
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCC
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTK 89 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~ 89 (160)
..++++++||+.-.........|...|+. +..+.|+..
T Consensus 62 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~ 100 (117)
T cd01522 62 GKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFE 100 (117)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCcee
Confidence 45678999998766677778888888886 445666655
No 299
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=50.48 E-value=37 Score=27.18 Aligned_cols=38 Identities=21% Similarity=0.414 Sum_probs=29.6
Q ss_pred ccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHH
Q psy13224 35 YDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEA 72 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~ 72 (160)
.+++|...+..++..+...|.+.|||-...+....+.+
T Consensus 24 ~GsGKT~~i~~ll~~~~~~g~~~iI~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 24 TGSGKTQAIRHLLDQIRARGDRAIIYDPKGEFTERFYR 61 (386)
T ss_dssp TTSSHHHHHHHHHHHHHHTT-EEEEEEETTHHHHHH--
T ss_pred CCCCHHHHHHHHHHHHHHcCCEEEEEECCchHHHHhcC
Confidence 36899999999999998999999999988776554444
No 300
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=50.47 E-value=69 Score=22.20 Aligned_cols=49 Identities=8% Similarity=-0.144 Sum_probs=32.0
Q ss_pred HHHHHHHHh--cCCCeEEEEeccHH-HHHHHHHHHHhcCCe-EEEEECCCCHH
Q psy13224 43 LDVILRKLK--AGGHRVLIFTQMTR-MLDVLEAFLNFHGHI-YLRLDGTTKVD 91 (160)
Q Consensus 43 l~~ll~~~~--~~~~k~lif~~~~~-~~~~l~~~l~~~~~~-~~~~~g~~~~~ 91 (160)
+.+.+..+. ..+..+++||..-. ........|...|++ +..+.|+....
T Consensus 103 ~~~~l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW 155 (162)
T TIGR03865 103 FRRGLERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGW 155 (162)
T ss_pred HHHHHHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHH
Confidence 344444332 34679999999643 345567777888887 66788887643
No 301
>PTZ00424 helicase 45; Provisional
Probab=50.11 E-value=1.3e+02 Score=23.80 Aligned_cols=95 Identities=11% Similarity=0.092 Sum_probs=54.9
Q ss_pred ccccCchHHHHH-HHHHHHhc--CCCeEEEEeccHHHHHHHHHHHHhc----CCeEEEEECCCCHHHHHHHHHHhccCCC
Q psy13224 33 IQYDCGKLQSLD-VILRKLKA--GGHRVLIFTQMTRMLDVLEAFLNFH----GHIYLRLDGTTKVDQRQVLMERFNMDAR 105 (160)
Q Consensus 33 ~~~~~~K~~~l~-~ll~~~~~--~~~k~lif~~~~~~~~~l~~~l~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 105 (160)
.+++++|..... -++..+.. .+.++|+.+.+.+.+..+.+.+... +.......|+....+ ....+. .+
T Consensus 72 apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~--~~ 146 (401)
T PTZ00424 72 AQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRD---DINKLK--AG 146 (401)
T ss_pred CCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHH---HHHHHc--CC
Confidence 456789997543 33333321 3458999999988776666655543 455666677766433 223332 33
Q ss_pred ceEEEEeccccc-----cccccccCCEEEEeC
Q psy13224 106 IFCFILSTRSGG-----VGINLTGADTVVFYD 132 (160)
Q Consensus 106 ~~vll~~~~~~~-----~Gldl~~~~~vi~~~ 132 (160)
..+++.++.... ..+.+.+...+|+=+
T Consensus 147 ~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDE 178 (401)
T PTZ00424 147 VHMVVGTPGRVYDMIDKRHLRVDDLKLFILDE 178 (401)
T ss_pred CCEEEECcHHHHHHHHhCCcccccccEEEEec
Confidence 455666554322 234566777777655
No 302
>PRK02362 ski2-like helicase; Provisional
Probab=50.10 E-value=73 Score=27.84 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=42.4
Q ss_pred ccccCchHHHHHH-HHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc---CCeEEEEECCCCHH
Q psy13224 33 IQYDCGKLQSLDV-ILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH---GHIYLRLDGTTKVD 91 (160)
Q Consensus 33 ~~~~~~K~~~l~~-ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~---~~~~~~~~g~~~~~ 91 (160)
.+++++|.....- +++.+ ..+.++++.+.+...+....+.++.. |+++..++|+.+..
T Consensus 46 APTGSGKTlia~lail~~l-~~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~ 107 (737)
T PRK02362 46 IPTASGKTLIAELAMLKAI-ARGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSR 107 (737)
T ss_pred CCCcchHHHHHHHHHHHHH-hcCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcc
Confidence 5667899887643 44444 45779999999998877777666654 78889999987643
No 303
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=49.87 E-value=1.3e+02 Score=24.46 Aligned_cols=68 Identities=9% Similarity=-0.024 Sum_probs=54.0
Q ss_pred ccccCchHHHHHHHHHHHhcCCC----eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGH----RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~----k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
.+..|-|.+....++....+.|. +.+|=+..-++...++-.-...|+++.++-....+.++...++.|
T Consensus 36 nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~ 107 (454)
T TIGR01137 36 NPGGSVKDRIALRMIEDAEASGRLKPGDTIIEPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKAL 107 (454)
T ss_pred CCCcchHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCeEEEEeCCCcCHHHHHHHHHC
Confidence 44578899998888888766554 556667777888899998889999988888876667788888888
No 304
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=49.68 E-value=1.4e+02 Score=26.63 Aligned_cols=63 Identities=14% Similarity=0.086 Sum_probs=44.3
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHH----HHHHHHHHhcCCeEEEEECCCC-HHHHHH
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRML----DVLEAFLNFHGHIYLRLDGTTK-VDQRQV 95 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~----~~l~~~l~~~~~~~~~~~g~~~-~~~r~~ 95 (160)
..++++|.....-.+-...-.|..+.|-+.+...+ .++...++..|+++..+.|+.+ .++|..
T Consensus 98 m~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~ 165 (790)
T PRK09200 98 MQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKA 165 (790)
T ss_pred ecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHH
Confidence 45578898875433322234588999999877754 4455666667999999999998 777664
No 305
>PLN02160 thiosulfate sulfurtransferase
Probab=49.66 E-value=49 Score=22.15 Aligned_cols=39 Identities=13% Similarity=-0.114 Sum_probs=30.4
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCCH
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTKV 90 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~ 90 (160)
..++++++||..-.....-...|...|+. +..+.|+...
T Consensus 79 ~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~ 118 (136)
T PLN02160 79 NPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLA 118 (136)
T ss_pred CCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHH
Confidence 45679999999887777778888888985 6667777653
No 306
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=49.21 E-value=1.2e+02 Score=23.29 Aligned_cols=83 Identities=18% Similarity=0.129 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEecc-HHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecc-c
Q psy13224 38 GKLQSLDVILRKLKAGGHRVLIFTQM-TRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTR-S 115 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~k~lif~~~-~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~-~ 115 (160)
=-...|.+.+.++++.| +.|||+++ -+.++.|.+.+-...-.-.+++|....- ...| +..+ +++.++ .
T Consensus 164 VN~elLk~~I~~lk~~G-atIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~i-----r~~~---Gkk~-~~ies~~s 233 (300)
T COG4152 164 VNVELLKDAIFELKEEG-ATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDI-----RRSF---GKKR-LVIESDLS 233 (300)
T ss_pred hhHHHHHHHHHHHHhcC-CEEEEecchHHHHHHHhhhhheecCCceEEeccHHHH-----HHhc---CCce-EEEeccCc
Confidence 36778888888887776 56667654 3456666655543332335567765522 2223 2333 444444 3
Q ss_pred cccccccccCCEEEE
Q psy13224 116 GGVGINLTGADTVVF 130 (160)
Q Consensus 116 ~~~Gldl~~~~~vi~ 130 (160)
..+=-+++++-.+..
T Consensus 234 ~eeL~~ipgi~~~~~ 248 (300)
T COG4152 234 LEELANIPGILKITE 248 (300)
T ss_pred hHHHhcCCCceeeee
Confidence 333445666666654
No 307
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=49.19 E-value=1.1e+02 Score=22.90 Aligned_cols=72 Identities=19% Similarity=0.219 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc-CCeEE-EEECCCCHHHHHHHHHHhccCCCceEEEE
Q psy13224 39 KLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH-GHIYL-RLDGTTKVDQRQVLMERFNMDARIFCFIL 111 (160)
Q Consensus 39 K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~-~~~~~-~~~g~~~~~~r~~~~~~f~~~~~~~vll~ 111 (160)
=.+.+.++++.....+.++.++-..++.++...+.|++. ++..+ ..+|--++++...+++.-+. .+..++++
T Consensus 90 G~dl~~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~-s~~dil~V 163 (243)
T PRK03692 90 GADLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHA-SGAKIVTV 163 (243)
T ss_pred hHHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHh-cCCCEEEE
Confidence 456667777665556678888888888888888888765 56654 35676666666666666653 33334443
No 308
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=48.96 E-value=1.2e+02 Score=23.35 Aligned_cols=68 Identities=12% Similarity=-0.044 Sum_probs=50.4
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCC-CHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTT-KVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~-~~~~r~~~~~~f 100 (160)
..+.|-|.+....++....+.+...||=+..-++...++-.-...|+++.++.... ...++...+..+
T Consensus 49 nptGSfKdR~a~~~l~~a~~~g~~~vv~aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~ 117 (328)
T TIGR00260 49 NPTLSFKDRGMAVALTKALELGNDTVLCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGY 117 (328)
T ss_pred CCchhhHhhhHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 44567899999999988877777676667777788888877677899988887765 445566566555
No 309
>PRK10638 glutaredoxin 3; Provisional
Probab=48.67 E-value=57 Score=19.46 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=31.5
Q ss_pred eEEEEe-ccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH
Q psy13224 56 RVLIFT-QMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLM 97 (160)
Q Consensus 56 k~lif~-~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~ 97 (160)
++.+|+ ..+..++.....|+..++.+..++=....+.+....
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~ 45 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMI 45 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHH
Confidence 567777 455678999999999999998887776655554443
No 310
>PRK05638 threonine synthase; Validated
Probab=48.18 E-value=1.5e+02 Score=24.17 Aligned_cols=69 Identities=9% Similarity=-0.088 Sum_probs=54.6
Q ss_pred cccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 32 LIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 32 ~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
..++.|-|.+...-++......+.+.||=.++-++...++..-...|+++.++-....+..+...+..|
T Consensus 89 ~nPtGSfKdR~a~~~i~~a~~~g~~~vv~aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~ 157 (442)
T PRK05638 89 RNPTGSFRDRLATVAVSYGLPYAANGFIVASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAF 157 (442)
T ss_pred CCCCCChHHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhc
Confidence 355678899998888887776676666667778888899999899999988887776667777777777
No 311
>PLN00011 cysteine synthase
Probab=48.13 E-value=1.3e+02 Score=23.37 Aligned_cols=68 Identities=12% Similarity=0.037 Sum_probs=54.6
Q ss_pred ccccCchHHHHHHHHHHHhcCC-----CeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGG-----HRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~-----~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
.++.|-|.+....++....+.| .+.||-+..-++...++-.-...|+++.++-....+..+...+..|
T Consensus 42 nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~ 114 (323)
T PLN00011 42 EPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRAL 114 (323)
T ss_pred CCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHc
Confidence 4467889999999998887776 3566667777888888888888999988887776667788888887
No 312
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=47.85 E-value=1.3e+02 Score=23.76 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=34.9
Q ss_pred CCCeEEEEec-cHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhc
Q psy13224 53 GGHRVLIFTQ-MTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFN 101 (160)
Q Consensus 53 ~~~k~lif~~-~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~ 101 (160)
.+.+++|||. .-.........|...|+.+..+.|+.... |......+.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~aw-r~~~~~~~~ 135 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKAY-RRFVIDTLE 135 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHHH-HHhhHHHHh
Confidence 4679999995 33445667788888999989999998865 344445554
No 313
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=47.70 E-value=82 Score=21.28 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=32.8
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHH
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLN 75 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~ 75 (160)
.++++||......++.++.. +++++++.....+-..+.+.
T Consensus 32 ~~tGsGKT~~~~~~~~~l~~---~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 32 APTGSGKTIIALALILELAR---KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp ESTTSSHHHHHHHHHHHHHC---EEEEEESSHHHHHHHHHHHH
T ss_pred ECCCCCcChhhhhhhhcccc---ceeEecCHHHHHHHHHHHHH
Confidence 45578999999998888765 99999998888777777774
No 314
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=47.55 E-value=1.6e+02 Score=24.36 Aligned_cols=92 Identities=11% Similarity=0.133 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEeccHH----HHHHHHHHHHhcCCeEEEEEC-CCCHHHHHHHHHHhccCCCceEEEEec
Q psy13224 39 KLQSLDVILRKLKAGGHRVLIFTQMTR----MLDVLEAFLNFHGHIYLRLDG-TTKVDQRQVLMERFNMDARIFCFILST 113 (160)
Q Consensus 39 K~~~l~~ll~~~~~~~~k~lif~~~~~----~~~~l~~~l~~~~~~~~~~~g-~~~~~~r~~~~~~f~~~~~~~vll~~~ 113 (160)
++....+.+....+.+++++||+++.. ..-.+...|...|..+...-- ......- .+......+.. +++..
T Consensus 21 ~~~~a~~~i~~ai~~~~~I~I~~d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~~~~g--~~~~~~~~~~~--liItv 96 (491)
T COG0608 21 DMEKAAARIAEAIEKGEKILIYGDYDADGITSAAILAKALRRLGADVDYYIPNRFEEGYG--AIRKLKEEGAD--LIITV 96 (491)
T ss_pred hHHHHHHHHHHHHHcCCEEEEEEecCcccHHHHHHHHHHHHHcCCceEEEeCCCccccch--HHHHHHhcCCC--EEEEE
Confidence 566666667666778899999998765 366778888888865433222 1111110 23333212223 66666
Q ss_pred ccccccccccc-----CCEEEEeCCC
Q psy13224 114 RSGGVGINLTG-----ADTVVFYDSD 134 (160)
Q Consensus 114 ~~~~~Gldl~~-----~~~vi~~~~~ 134 (160)
|.+.-.++-.. ...||..|..
T Consensus 97 D~G~~~~~~i~~~~~~g~~vIVtDHH 122 (491)
T COG0608 97 DNGSGSLEEIARAKELGIDVIVTDHH 122 (491)
T ss_pred CCCcccHHHHHHHHhCCCcEEEECCC
Confidence 77776655432 1445555544
No 315
>PRK00254 ski2-like helicase; Provisional
Probab=47.18 E-value=1.1e+02 Score=26.73 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=43.1
Q ss_pred ccccCchHHHH-HHHHHHHhcCCCeEEEEeccHHHHHHHHHHHH---hcCCeEEEEECCCCHH
Q psy13224 33 IQYDCGKLQSL-DVILRKLKAGGHRVLIFTQMTRMLDVLEAFLN---FHGHIYLRLDGTTKVD 91 (160)
Q Consensus 33 ~~~~~~K~~~l-~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~---~~~~~~~~~~g~~~~~ 91 (160)
.+++++|.... .-+++.+...+.++|+-+.+...+....+.+. ..|+++..++|+.+..
T Consensus 46 apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~ 108 (720)
T PRK00254 46 IPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDST 108 (720)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCc
Confidence 45678998876 55566666567799999998887666665554 3488899999987753
No 316
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=46.48 E-value=76 Score=20.23 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=31.4
Q ss_pred HHHHHHHHh-cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCC
Q psy13224 43 LDVILRKLK-AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTK 89 (160)
Q Consensus 43 l~~ll~~~~-~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~ 89 (160)
+.+.+..+. ..+..+++||..-.........|.+.|+.-+...|+..
T Consensus 48 l~~~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 95 (104)
T PRK10287 48 VKERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGLK 95 (104)
T ss_pred HHHHHHhcCCCCCCeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCHH
Confidence 444454442 23457999998876667778888888887665556543
No 317
>KOG3849|consensus
Probab=46.30 E-value=77 Score=24.47 Aligned_cols=54 Identities=24% Similarity=0.194 Sum_probs=41.7
Q ss_pred cCchHHHHHHHHHHHhcCC--CeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCC
Q psy13224 36 DCGKLQSLDVILRKLKAGG--HRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTK 89 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~--~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~ 89 (160)
...|...+.++.+....-+ +.|.|-+++..+++.|.+.|..-++++..+.....
T Consensus 280 ~Psk~~I~rqik~~v~si~dakSVfVAsDs~hmi~Eln~aL~~~~i~vh~l~pdd~ 335 (386)
T KOG3849|consen 280 SPSKQQILRQIKEKVGSIGDAKSVFVASDSDHMIDELNEALKPYEIEVHRLEPDDM 335 (386)
T ss_pred CccHHHHHHHHHHHHhhhcccceEEEeccchhhhHHHHHhhcccceeEEecCcccc
Confidence 4568888888887775554 47778888888999999999988888877655443
No 318
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=46.00 E-value=72 Score=24.14 Aligned_cols=50 Identities=14% Similarity=-0.039 Sum_probs=34.6
Q ss_pred HHHHHHHHHH-hcCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCCH
Q psy13224 41 QSLDVILRKL-KAGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTKV 90 (160)
Q Consensus 41 ~~l~~ll~~~-~~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~ 90 (160)
+.|..++... ...++++++||+.-.....+.-.|...|++ +..++|+...
T Consensus 217 ~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~e 268 (281)
T PRK11493 217 DELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSE 268 (281)
T ss_pred HHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHH
Confidence 3344444332 234568999999887777788888888885 6788887663
No 319
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=45.57 E-value=77 Score=20.04 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=27.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCC
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTK 89 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~ 89 (160)
.+.++++||..-.........|...|+.-+...|+..
T Consensus 57 ~~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 93 (101)
T TIGR02981 57 KNDTVKLYCNAGRQSGMAKDILLDMGYTHAENAGGIK 93 (101)
T ss_pred CCCeEEEEeCCCHHHHHHHHHHHHcCCCeEEecCCHH
Confidence 3458889998877777778888889987555446543
No 320
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=45.00 E-value=76 Score=19.85 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCCH
Q psy13224 43 LDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTKV 90 (160)
Q Consensus 43 l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~ 90 (160)
+.+.+.. ...+..++++|............|...|+. +..+.|+...
T Consensus 48 l~~~~~~-~~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T PRK00162 48 LGAFMRQ-ADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEA 95 (108)
T ss_pred HHHHHHh-cCCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHH
Confidence 4444443 244568889998766666777788888886 6678887653
No 321
>KOG0389|consensus
Probab=44.50 E-value=2.1e+02 Score=25.76 Aligned_cols=94 Identities=17% Similarity=0.200 Sum_probs=57.0
Q ss_pred CchHHHHHHHHHHHhcCC--CeEEEEeccHHHHHHHHHHHHhc-CCeEEEEECCCCHHHHHHHHHHhccC-CCceEEEEe
Q psy13224 37 CGKLQSLDVILRKLKAGG--HRVLIFTQMTRMLDVLEAFLNFH-GHIYLRLDGTTKVDQRQVLMERFNMD-ARIFCFILS 112 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~--~k~lif~~~~~~~~~l~~~l~~~-~~~~~~~~g~~~~~~r~~~~~~f~~~-~~~~vll~~ 112 (160)
-+|.=-+..++..+++.| ..=||.+.....-.|+.++=+-. .+.+..++|+. ++|..+-..++.+ +...|+|.+
T Consensus 429 LGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleNWlrEf~kwCPsl~Ve~YyGSq--~ER~~lR~~i~~~~~~ydVllTT 506 (941)
T KOG0389|consen 429 LGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLENWLREFAKWCPSLKVEPYYGSQ--DERRELRERIKKNKDDYDVLLTT 506 (941)
T ss_pred CcchhHHHHHHHHHHHcCCCCCcEEEecchhHHHHHHHHHHhCCceEEEeccCcH--HHHHHHHHHHhccCCCccEEEEE
Confidence 356666666666655443 35556666666666766654433 66778888877 6777777777643 456667777
Q ss_pred ccccccc------cccccCCEEEEeC
Q psy13224 113 TRSGGVG------INLTGADTVVFYD 132 (160)
Q Consensus 113 ~~~~~~G------ldl~~~~~vi~~~ 132 (160)
+..++.- +--+..++||+-+
T Consensus 507 Y~la~~~kdDRsflk~~~~n~viyDE 532 (941)
T KOG0389|consen 507 YNLAASSKDDRSFLKNQKFNYVIYDE 532 (941)
T ss_pred eecccCChHHHHHHHhccccEEEecc
Confidence 6665521 1124566666544
No 322
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=44.10 E-value=2e+02 Score=25.55 Aligned_cols=65 Identities=12% Similarity=0.089 Sum_probs=46.5
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHH----HHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTR----MLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLM 97 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~----~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~ 97 (160)
..++++|.....-..--....|.++-|.+...- ..+++...++..|+++..+.++.++++|....
T Consensus 98 M~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY 166 (764)
T PRK12326 98 MATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAY 166 (764)
T ss_pred ccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHH
Confidence 445678876654433333456778888776544 46677788888899999999999998887655
No 323
>KOG0701|consensus
Probab=43.75 E-value=12 Score=35.57 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=62.9
Q ss_pred eEEEEeccHHHHHHHHHHHHhc-CCeEEEEECCCCH-----------HHHHHHHHHhccCCCceEEEEeccccccccccc
Q psy13224 56 RVLIFTQMTRMLDVLEAFLNFH-GHIYLRLDGTTKV-----------DQRQVLMERFNMDARIFCFILSTRSGGVGINLT 123 (160)
Q Consensus 56 k~lif~~~~~~~~~l~~~l~~~-~~~~~~~~g~~~~-----------~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~ 123 (160)
..++|++..-.+..+.+++... -.....+.|...+ -.+.+.+..|. ..... +|..+.+.-+|+|++
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~-~~~ln-~L~~~~~~~e~~d~~ 371 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFH-FHELN-LLIATSVLEEGVDVP 371 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHh-hhhhh-HHHHHHHHHhhcchh
Confidence 4568888777666666655543 2223335553222 11344556664 23333 677778888999999
Q ss_pred cCCEEEEeCCCCCcChhhHHHHHHHhcC
Q psy13224 124 GADTVVFYDSDWNPTMDAQAQDRCHRIG 151 (160)
Q Consensus 124 ~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 151 (160)
.++.++.++.+-.-..+.|+.||+-+.+
T Consensus 372 ~~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 372 KCNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhhheeccCcchHHHHHHhhcccccch
Confidence 9999999999999999999999986643
No 324
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=43.02 E-value=55 Score=22.34 Aligned_cols=64 Identities=13% Similarity=0.148 Sum_probs=48.3
Q ss_pred ccCchHHHHHHHHHHHhcCCCeEEEEec---cHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhc
Q psy13224 35 YDCGKLQSLDVILRKLKAGGHRVLIFTQ---MTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFN 101 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~~~~~k~lif~~---~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~ 101 (160)
..|.|.--..++++.+.+.|..+||-++ .++.++.|...|....+. -...++.+++..+.+.|.
T Consensus 57 l~S~R~~~~~evi~~I~~~G~PviVAtDV~p~P~~V~Kia~~f~A~ly~---P~~dlsveeK~~l~~~~~ 123 (138)
T PF04312_consen 57 LKSSRNMSRSEVIEWISEYGKPVIVATDVSPPPETVKKIARSFNAVLYT---PERDLSVEEKQELAREYS 123 (138)
T ss_pred EEeecCCCHHHHHHHHHHcCCEEEEEecCCCCcHHHHHHHHHhCCcccC---CCCcCCHHHHHHHHHhhC
Confidence 3466666677788888888999999886 455678888887755433 355789999999999985
No 325
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=42.88 E-value=1.2e+02 Score=27.90 Aligned_cols=101 Identities=13% Similarity=0.157 Sum_probs=63.7
Q ss_pred HHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHH----HHHHHhccCCCceEEEEeccccccc
Q psy13224 44 DVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQ----VLMERFNMDARIFCFILSTRSGGVG 119 (160)
Q Consensus 44 ~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~----~~~~~f~~~~~~~vll~~~~~~~~G 119 (160)
..+.+...+.|..++.-+.....+..+.+.-++.|+....=.| ..+--.. +.++++. ....++..+.+.++ |
T Consensus 662 ~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~G-lDPGid~~lA~~~Id~~~-~~~GkI~s~~s~~G--G 737 (1042)
T PLN02819 662 AVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEMG-LDPGIDHMMAMKMIDDAH-ERGGKVKSFTSYCG--G 737 (1042)
T ss_pred HHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECCc-cCHHHHHHHHHHHHHhhc-ccCCcEEEEEEEEc--C
Confidence 3344444566777776666667778888888888888766666 4443332 3455543 22345555555555 6
Q ss_pred cccc-cCCEEEEeCCCCCcChhhHHHHHHH
Q psy13224 120 INLT-GADTVVFYDSDWNPTMDAQAQDRCH 148 (160)
Q Consensus 120 ldl~-~~~~vi~~~~~~~~~~~~Q~~gR~~ 148 (160)
|.-+ ..+.-..|-..|||.-.+-.-.+..
T Consensus 738 LP~pe~~~npL~YkfsWSp~gvi~~~~npa 767 (1042)
T PLN02819 738 LPSPEAANNPLAYKFSWNPAGAIKAGQNPA 767 (1042)
T ss_pred ccCcccCCCcccccccCCHHHHHHHhcCcc
Confidence 6643 7788899999999987765444433
No 326
>PRK07409 threonine synthase; Validated
Probab=42.87 E-value=1.6e+02 Score=23.07 Aligned_cols=68 Identities=12% Similarity=0.011 Sum_probs=51.5
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCC-CHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTT-KVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~-~~~~r~~~~~~f 100 (160)
....|-|.+....++....+.+.+.||=+.+-++...++-.-...|+++.++-... .+.++...+..|
T Consensus 56 nptGSfKdR~a~~~l~~a~~~g~~~iv~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~ 124 (353)
T PRK07409 56 NPTGSFKDRGMTMAVTKAKEEGAKAVICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMY 124 (353)
T ss_pred CCccchHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhc
Confidence 44567899999999988877777777766667778888888888899987776664 456666677777
No 327
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=42.83 E-value=74 Score=28.37 Aligned_cols=95 Identities=17% Similarity=0.158 Sum_probs=55.8
Q ss_pred ccccCchHHH-HHHHHHHHhcCC------C-eEEEEecc----HHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQS-LDVILRKLKAGG------H-RVLIFTQM----TRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~-l~~ll~~~~~~~------~-k~lif~~~----~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
.+++|+|..+ +.-++..+.+.+ . .+|-.+.- ++....|...++..|+++.+-||.+++.+|++..
T Consensus 44 APTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~--- 120 (814)
T COG1201 44 APTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKML--- 120 (814)
T ss_pred cCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhcc---
Confidence 4556788653 444555554442 1 33333332 2345566777778899999999999999988765
Q ss_pred ccCCCceEEEEecccccccc-------ccccCCEEEEeC
Q psy13224 101 NMDARIFCFILSTRSGGVGI-------NLTGADTVVFYD 132 (160)
Q Consensus 101 ~~~~~~~vll~~~~~~~~Gl-------dl~~~~~vi~~~ 132 (160)
..-..++++++....-=+ .+.++.+||.=+
T Consensus 121 --~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDE 157 (814)
T COG1201 121 --KNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDE 157 (814)
T ss_pred --CCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeeh
Confidence 222344665555433111 245677777643
No 328
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=42.65 E-value=70 Score=22.01 Aligned_cols=44 Identities=20% Similarity=-0.022 Sum_probs=29.7
Q ss_pred ccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCC
Q psy13224 35 YDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGH 79 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~ 79 (160)
++++|.....+++......|++++.++- .+..+.+.+.+...|+
T Consensus 8 ~G~GKT~l~~~~~~~~~~~g~~v~~~s~-e~~~~~~~~~~~~~g~ 51 (187)
T cd01124 8 PGTGKTTFALQFLYAGLARGEPGLYVTL-EESPEELIENAESLGW 51 (187)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEEC-CCCHHHHHHHHHHcCC
Confidence 4678999999998887777888876653 4444555444444343
No 329
>PRK06608 threonine dehydratase; Provisional
Probab=42.52 E-value=1.7e+02 Score=23.01 Aligned_cols=68 Identities=10% Similarity=-0.039 Sum_probs=53.2
Q ss_pred ccccCchHHHHHHHHHHHhcCCC--eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGH--RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~--k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
....|-|.+....++..+.+.+. +.+|-+..-++...++-.-...|+++.++-......++...+..|
T Consensus 48 nptGS~K~R~a~~~v~~a~~~g~~~~~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~ 117 (338)
T PRK06608 48 QKTGAFKVRGVLNHLLELKEQGKLPDKIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYY 117 (338)
T ss_pred CCCCCcHHHHHHHHHHHhhhhcCcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhC
Confidence 34567899988888888776664 566666677888888888888899988888877777888888887
No 330
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=42.49 E-value=97 Score=24.05 Aligned_cols=49 Identities=12% Similarity=-0.001 Sum_probs=33.6
Q ss_pred HHHHHHHHHH-hcCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCC
Q psy13224 41 QSLDVILRKL-KAGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTK 89 (160)
Q Consensus 41 ~~l~~ll~~~-~~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~ 89 (160)
+.|.+++..+ ...++.+++||+.-...-...-.|+..|++ +..++|+..
T Consensus 255 ~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~ 305 (320)
T PLN02723 255 EELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWT 305 (320)
T ss_pred HHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHH
Confidence 3355555543 234569999999866666667777778885 678888765
No 331
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=42.39 E-value=1.4e+02 Score=22.96 Aligned_cols=56 Identities=18% Similarity=0.109 Sum_probs=34.2
Q ss_pred HHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhc
Q psy13224 46 ILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFN 101 (160)
Q Consensus 46 ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~ 101 (160)
.++...+.|+.+|+.+.+-..-+.+...+...+.+...+.-..+...-+..+.+.+
T Consensus 124 ~l~~a~a~gkgvIllt~H~GnWE~~~~~l~~~~~~~~~vyr~~~n~~~d~~i~~~R 179 (308)
T PRK06553 124 IFERLRDDGKPALIFTAHLGNWELLAIAAAAFGLDVTVLFRPPNNPYAARKVLEAR 179 (308)
T ss_pred HHHHHHhcCCCEEEEeeCchHHHHHHHHHHHcCCceEEEEecCCChHHHHHHHHHH
Confidence 44445566777777776666666666666666777666665555444444444444
No 332
>PRK06352 threonine synthase; Validated
Probab=42.12 E-value=1.7e+02 Score=23.04 Aligned_cols=68 Identities=10% Similarity=-0.027 Sum_probs=53.5
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCC-CHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTT-KVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~-~~~~r~~~~~~f 100 (160)
....|-|.+....++....+.+.+.||=+..-++...++-.-...|+++.++-... .+.++...+..|
T Consensus 53 nptGS~KdR~a~~~i~~a~~~g~~~vV~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~ 121 (351)
T PRK06352 53 NPTGSFKDRGMVMAVAKAKEEGAEAVICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMY 121 (351)
T ss_pred CCccChHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhc
Confidence 44568899999999988877777777777777888888888888899988888765 356666677777
No 333
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=42.04 E-value=23 Score=31.57 Aligned_cols=48 Identities=19% Similarity=0.095 Sum_probs=42.7
Q ss_pred CCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcC
Q psy13224 104 ARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIG 151 (160)
Q Consensus 104 ~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 151 (160)
....-+|.|..+..+|-|-|++=++.-+.++-|-..=.|.+||..|+.
T Consensus 481 d~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLa 528 (985)
T COG3587 481 DEPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLA 528 (985)
T ss_pred CCcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeee
Confidence 345669999999999999999999999998888888889999999974
No 334
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=41.72 E-value=75 Score=23.45 Aligned_cols=45 Identities=24% Similarity=0.407 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCeEEEEECCCCHHH-HHHHHHHhccCCCceEEEEec
Q psy13224 68 DVLEAFLNFHGHIYLRLDGTTKVDQ-RQVLMERFNMDARIFCFILST 113 (160)
Q Consensus 68 ~~l~~~l~~~~~~~~~~~g~~~~~~-r~~~~~~f~~~~~~~vll~~~ 113 (160)
+.+..+|...+-.++++++..+-.+ |..+.+.+. ..+.+++++-+
T Consensus 85 ~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~-~~~~~vlFIEs 130 (222)
T PF01591_consen 85 EDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFK-EHGIKVLFIES 130 (222)
T ss_dssp HHHHHHHHTS--SEEEEES---SHHHHHHHHHHHH-HTT-EEEEEEE
T ss_pred HHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHH-HcCCcEEEEEE
Confidence 3344555556667888888666544 455555554 34466666543
No 335
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=41.45 E-value=1.8e+02 Score=23.19 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=10.6
Q ss_pred HHHHHHHHHhcCCeEEEEEC
Q psy13224 67 LDVLEAFLNFHGHIYLRLDG 86 (160)
Q Consensus 67 ~~~l~~~l~~~~~~~~~~~g 86 (160)
.+.+.+.|+..++.+..++|
T Consensus 48 ~~~v~~~L~~~~i~~~~f~~ 67 (383)
T PRK09860 48 AGDVQKALEERNIFSVIYDG 67 (383)
T ss_pred HHHHHHHHHHcCCeEEEeCC
Confidence 44555555555555555544
No 336
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=41.41 E-value=1.1e+02 Score=20.73 Aligned_cols=89 Identities=13% Similarity=0.081 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHh--cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 39 KLQSLDVILRKLK--AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 39 K~~~l~~ll~~~~--~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
=...+.+++++.. -.|+++.|+..+....+-+..+|...|..+...|..... ++..- . .-.+++.++...
T Consensus 11 t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~------l~~~v-~-~ADIVvsAtg~~ 82 (140)
T cd05212 11 VAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQ------LQSKV-H-DADVVVVGSPKP 82 (140)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcC------HHHHH-h-hCCEEEEecCCC
Confidence 4566777777642 247899999999999999999999999998888765531 11111 2 223344333332
Q ss_pred c--cccccccCCEEEEeCCCC
Q psy13224 117 G--VGINLTGADTVVFYDSDW 135 (160)
Q Consensus 117 ~--~Gldl~~~~~vi~~~~~~ 135 (160)
. .+=.+....+|+-+++.+
T Consensus 83 ~~i~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 83 EKVPTEWIKPGATVINCSPTK 103 (140)
T ss_pred CccCHHHcCCCCEEEEcCCCc
Confidence 2 122255667777777665
No 337
>PRK08197 threonine synthase; Validated
Probab=41.15 E-value=1.9e+02 Score=23.21 Aligned_cols=68 Identities=12% Similarity=-0.050 Sum_probs=54.0
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
.++.|-|.+...-++....+.|.+.||=.+.-++...++-.-...|+++.++-....+..+...+..+
T Consensus 105 nPtGSfKdRga~~~i~~a~~~g~~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~ 172 (394)
T PRK08197 105 NPTGSFKARGLAVGVSRAKELGVKHLAMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALA 172 (394)
T ss_pred CCCcCcHHhHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHc
Confidence 45678899999889988877777777767777888888888888999988887766666666667666
No 338
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=40.64 E-value=75 Score=24.06 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHH-hcCCCeEEEEeccHH-HHHHHHHHHHhcCCe-EEEEECCCCH
Q psy13224 39 KLQSLDVILRKL-KAGGHRVLIFTQMTR-MLDVLEAFLNFHGHI-YLRLDGTTKV 90 (160)
Q Consensus 39 K~~~l~~ll~~~-~~~~~k~lif~~~~~-~~~~l~~~l~~~~~~-~~~~~g~~~~ 90 (160)
....+.+++..+ ...+.++++||+... ....+.-.|...|++ +..++|+.+.
T Consensus 71 ~~~~~~~~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~ 125 (281)
T PRK11493 71 RPETFAVAMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAG 125 (281)
T ss_pred CHHHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHH
Confidence 346677777765 334668999998543 234455567777776 6677776544
No 339
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=40.21 E-value=1.6e+02 Score=22.90 Aligned_cols=42 Identities=17% Similarity=0.076 Sum_probs=31.9
Q ss_pred HHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEEC
Q psy13224 45 VILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDG 86 (160)
Q Consensus 45 ~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g 86 (160)
+.+.++.++++.+|++|.+-...+.....+...+..+..+.-
T Consensus 113 e~l~e~l~~~~gvIl~~~H~gn~E~~~~~l~~~~~~~~~~yr 154 (308)
T COG1560 113 EHLEEALANGRGVILVTPHFGNWELGGRALAQQGPKVTAMYR 154 (308)
T ss_pred HHHHHHHHcCCCEEEEecCcchHHHHHHHHHHhCCCeeEEec
Confidence 345555677889999999888889999999988777444433
No 340
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=40.18 E-value=68 Score=17.86 Aligned_cols=44 Identities=11% Similarity=0.218 Sum_probs=32.1
Q ss_pred EEEe-ccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhc
Q psy13224 58 LIFT-QMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFN 101 (160)
Q Consensus 58 lif~-~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~ 101 (160)
.+|+ .++..+..+...|+..++.+..++-...+..+....+.+.
T Consensus 3 ~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~ 47 (74)
T TIGR02196 3 KVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLG 47 (74)
T ss_pred EEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhC
Confidence 3444 5566788888889999999988877766666666666664
No 341
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=40.02 E-value=1.6e+02 Score=22.26 Aligned_cols=73 Identities=14% Similarity=0.237 Sum_probs=51.3
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc--CCeEEEEE-CCCCHHHHHHHHHHhccCCCceEEEE
Q psy13224 38 GKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH--GHIYLRLD-GTTKVDQRQVLMERFNMDARIFCFIL 111 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~-g~~~~~~r~~~~~~f~~~~~~~vll~ 111 (160)
+=.+....+++...+++.++-++-..++.++.-+..|.+. +.+++-.| |--++++.+.++++-+ ..+..++++
T Consensus 92 ~G~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~-~s~pdil~V 167 (253)
T COG1922 92 AGTDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIA-ASGPDILLV 167 (253)
T ss_pred ChHHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHH-hcCCCEEEE
Confidence 4567788888876666678888888888888888888876 45766666 7777766666666665 344444444
No 342
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=39.96 E-value=1.9e+02 Score=26.27 Aligned_cols=66 Identities=11% Similarity=0.043 Sum_probs=45.9
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHH----HHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHH
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTR----MLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLME 98 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~----~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~ 98 (160)
-.++++|.....-.+--....|..+-|.+...- +..++...++..|+++..++++.++++|.....
T Consensus 102 M~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~ 171 (913)
T PRK13103 102 MRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA 171 (913)
T ss_pred ccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc
Confidence 445678876533222222345777777776543 467788888888999999999999999887653
No 343
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=39.74 E-value=2.2e+02 Score=23.57 Aligned_cols=76 Identities=14% Similarity=0.229 Sum_probs=49.5
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEec---cHHHHHHHHHHHHhcCCeEEEEECCCCHHH-HHHHHHHhccCCCceEEEE
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQ---MTRMLDVLEAFLNFHGHIYLRLDGTTKVDQ-RQVLMERFNMDARIFCFIL 111 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~---~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~-r~~~~~~f~~~~~~~vll~ 111 (160)
.|+|.-...+|-..+...+.|+++-+- .+...+-|...-+..++++.....+.++.+ -...++.|. .....++|+
T Consensus 110 GsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak-~~~~DvvIv 188 (451)
T COG0541 110 GSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAK-EEGYDVVIV 188 (451)
T ss_pred CCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHH-HcCCCEEEE
Confidence 578888888888888778888877664 233466666666667877766644555544 466777776 333444554
Q ss_pred e
Q psy13224 112 S 112 (160)
Q Consensus 112 ~ 112 (160)
.
T Consensus 189 D 189 (451)
T COG0541 189 D 189 (451)
T ss_pred e
Confidence 4
No 344
>PRK07591 threonine synthase; Validated
Probab=39.67 E-value=2.1e+02 Score=23.28 Aligned_cols=76 Identities=9% Similarity=-0.067 Sum_probs=56.9
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS 112 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~ 112 (160)
.++.|-|.+...-++....+.|.+.|+-.+.-++...++..-...|+++.++-....+..+...+..| +-.++++.
T Consensus 115 nPtGSfKdRga~~~v~~A~~~g~~~vv~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~~k~~~~~~~----GA~Vi~v~ 190 (421)
T PRK07591 115 NPTHSFKDRVVSVALTAARELGFTTVACASTGNLANSVAAHAARAGLDSCVFIPADLEAGKIVGTLVY----GPTLVAVD 190 (421)
T ss_pred CCccChHHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHc----CCEEEEEC
Confidence 34567899988888888777777777777778888889988888999988887766666666666666 33445544
No 345
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=39.21 E-value=2.1e+02 Score=25.62 Aligned_cols=70 Identities=10% Similarity=-0.005 Sum_probs=48.0
Q ss_pred CCCccccccCchHHHHHHHHHHHhcCCCeEEEEeccHH----HHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH
Q psy13224 28 PDPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTR----MLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLM 97 (160)
Q Consensus 28 ~~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~----~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~ 97 (160)
....-..++++|.....-..-.....|..+-|-+...- +..++...++..|+++..+.|++++++|....
T Consensus 95 G~iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~y 168 (796)
T PRK12906 95 GNIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAY 168 (796)
T ss_pred CCcccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHh
Confidence 33333455678876644333333456777777776433 46778888889999999999999999887644
No 346
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=38.87 E-value=44 Score=25.42 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=20.2
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEec
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQ 62 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~ 62 (160)
..-+..|-.|++.++...+++||||+
T Consensus 121 k~dl~~Lp~l~~~Lr~~~~kFIlFcD 146 (287)
T COG2607 121 KEDLATLPDLVELLRARPEKFILFCD 146 (287)
T ss_pred HHHHhhHHHHHHHHhcCCceEEEEec
Confidence 34555677788887888899999996
No 347
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=38.80 E-value=75 Score=18.09 Aligned_cols=30 Identities=10% Similarity=0.047 Sum_probs=17.7
Q ss_pred EEEeccHHHHHHHHHHHHhcCCeEEEEECC
Q psy13224 58 LIFTQMTRMLDVLEAFLNFHGHIYLRLDGT 87 (160)
Q Consensus 58 lif~~~~~~~~~l~~~l~~~~~~~~~~~g~ 87 (160)
+..+...-.+..+...|+..|+.+.+.+..
T Consensus 3 l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 3 LYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred EEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 455666677899999999999998765443
No 348
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=38.57 E-value=42 Score=29.41 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=30.9
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHH
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLE 71 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~ 71 (160)
+++|-..+.++|+.+.+.|++.|||-...+.+..+.
T Consensus 195 GSGKS~~i~~LL~~ir~RGdrAIIyD~~GeFv~~FY 230 (732)
T PRK13700 195 GAGKSEVIRRLANYARQRGDMVVIYDRSGEFVKSYY 230 (732)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCCCchHHHhc
Confidence 579999999999999999999999998777655544
No 349
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=38.54 E-value=1e+02 Score=23.40 Aligned_cols=33 Identities=12% Similarity=0.200 Sum_probs=27.3
Q ss_pred HHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCe
Q psy13224 48 RKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHI 80 (160)
Q Consensus 48 ~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~ 80 (160)
.+....|..+.+|+.+.+.+....+.|++.|+-
T Consensus 182 ~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 182 SDALKPGGVVVVYSPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred HHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 334567789999999999999999999988654
No 350
>PRK06450 threonine synthase; Validated
Probab=38.53 E-value=1.9e+02 Score=22.67 Aligned_cols=72 Identities=11% Similarity=-0.050 Sum_probs=57.2
Q ss_pred CCccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 29 DPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 29 ~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
++...++.|-|.+...-++....+.+.+.++=.++=++...++-.-...|+++.++-....+..+...+..+
T Consensus 71 ~E~~nPTGSfKDRga~~~i~~a~~~g~~~vv~aSsGN~g~slA~~aa~~G~~~~i~vP~~~~~~k~~~i~~~ 142 (338)
T PRK06450 71 LDFLNPTGSYKDRGSVTLISYLAEKGIKQISEDSSGNAGASIAAYGAAAGIEVKIFVPETASGGKLKQIESY 142 (338)
T ss_pred ecCCCCcCCCHHHHHHHHHHHHHHcCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHc
Confidence 334455678899999989988877777777777777888889988888999988887777777777777777
No 351
>KOG1803|consensus
Probab=37.01 E-value=51 Score=28.24 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=35.5
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHH
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLN 75 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~ 75 (160)
+.+|...|.+++..+...++++||=..+...++-+.+.|.
T Consensus 211 GTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 211 GTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred CCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 5689999999999998899999999999998888888655
No 352
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=36.85 E-value=1.3e+02 Score=22.47 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=30.5
Q ss_pred cccCchHHHHHHHHHHHhcCC----CeEEEEeccHHHHHHHHHHHHh
Q psy13224 34 QYDCGKLQSLDVILRKLKAGG----HRVLIFTQMTRMLDVLEAFLNF 76 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~----~k~lif~~~~~~~~~l~~~l~~ 76 (160)
..+|||...+...+..+...+ +++++.+-+...+..+.+.+..
T Consensus 21 ~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 21 GAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp -TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 346899999988776665443 5899988888776666655553
No 353
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=36.79 E-value=2e+02 Score=22.27 Aligned_cols=76 Identities=13% Similarity=0.129 Sum_probs=40.0
Q ss_pred hcCCCeEEEEeccHHHHHHHHHHHHh-cCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEE
Q psy13224 51 KAGGHRVLIFTQMTRMLDVLEAFLNF-HGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVV 129 (160)
Q Consensus 51 ~~~~~k~lif~~~~~~~~~l~~~l~~-~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi 129 (160)
...|..+|.+|++......|....+. ..+.+.+..+. +..+-........ ..+..+.+++-.++ |.-++.++.|+
T Consensus 113 i~~g~~ILT~~~S~tv~~~l~~a~~~~~~f~V~v~Esr-P~~~G~~~a~~L~-~~gI~vtlI~Dsa~--~~~m~~vd~Vi 188 (301)
T TIGR00511 113 IRDGDVVMTHCNSEAALSVIKTAFEQGKDIEVIATETR-PRKQGHITAKELR-DYGIPVTLIVDSAV--RYFMKEVDHVV 188 (301)
T ss_pred cCCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecCC-CcchHHHHHHHHH-HCCCCEEEEehhHH--HHHHHhCCEEE
Confidence 45677899999987776666655544 34554433333 3333233333333 34455555443322 33345566665
Q ss_pred E
Q psy13224 130 F 130 (160)
Q Consensus 130 ~ 130 (160)
.
T Consensus 189 v 189 (301)
T TIGR00511 189 V 189 (301)
T ss_pred E
Confidence 5
No 354
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=36.75 E-value=1.1e+02 Score=23.04 Aligned_cols=77 Identities=12% Similarity=0.147 Sum_probs=40.1
Q ss_pred hcCCCeEEEEeccHHHHHHHHHHHHh-cCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccccccccccc-CCEE
Q psy13224 51 KAGGHRVLIFTQMTRMLDVLEAFLNF-HGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTG-ADTV 128 (160)
Q Consensus 51 ~~~~~k~lif~~~~~~~~~l~~~l~~-~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~-~~~v 128 (160)
...+..+|.|+.+......|...-+. ..+.+.+..+.-. .+-......+. ..+..+.++.-.++ |.-++. ++.|
T Consensus 105 I~~~~~ILT~~~S~~v~~~l~~a~~~~~~~~V~v~es~P~-~eG~~~a~~L~-~~gi~v~~i~d~~~--~~~m~~~vd~V 180 (282)
T PF01008_consen 105 INDGDTILTHGYSSTVERFLLSAKKKGKKFRVIVLESRPY-NEGRLMAKELA-EAGIPVTLIPDSAV--GYVMPRDVDKV 180 (282)
T ss_dssp C-TTEEEEEES--SHHHHHHHHHHHTTEEEEEEEE--TTT-THHHTHHHHHH-HTT-EEEEE-GGGH--HHHHHCTESEE
T ss_pred ccCCeEEEEeCCchHHHHHHHHHHHcCCeEEEEEccCCcc-hhhhhHHHHhh-hcceeEEEEechHH--HHHHHHhCCee
Confidence 45677999999988877777774432 3555555554433 33344555554 34555555543333 444555 6666
Q ss_pred EEe
Q psy13224 129 VFY 131 (160)
Q Consensus 129 i~~ 131 (160)
+.-
T Consensus 181 liG 183 (282)
T PF01008_consen 181 LIG 183 (282)
T ss_dssp EEE
T ss_pred EEe
Confidence 653
No 355
>PRK06721 threonine synthase; Reviewed
Probab=36.30 E-value=2.1e+02 Score=22.49 Aligned_cols=76 Identities=9% Similarity=-0.006 Sum_probs=55.8
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCC-CHHHHHHHHHHhccCCCceEEEE
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTT-KVDQRQVLMERFNMDARIFCFIL 111 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~-~~~~r~~~~~~f~~~~~~~vll~ 111 (160)
....|-|.+....++....+.|.+.||=+.+-++...++..-...|+++.++-... .+..+...+..| +-.++++
T Consensus 53 nptGS~KdR~a~~~i~~a~~~g~~~vV~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~----GA~V~~~ 128 (352)
T PRK06721 53 NPTGSFKDRGMVMAVAKAKEEGSEAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAY----GAEIISI 128 (352)
T ss_pred CCccchHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHc----CCEEEEE
Confidence 44568899999999988877777666666677777788888888899988888764 355666677777 3344555
Q ss_pred e
Q psy13224 112 S 112 (160)
Q Consensus 112 ~ 112 (160)
.
T Consensus 129 ~ 129 (352)
T PRK06721 129 E 129 (352)
T ss_pred C
Confidence 4
No 356
>KOG0780|consensus
Probab=36.02 E-value=2.5e+02 Score=23.13 Aligned_cols=78 Identities=17% Similarity=0.141 Sum_probs=44.4
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHH---HHHHHHHHHHhcCCeEEE-EECCCCHHHHHHHHHHhccCCCceEEEE
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTR---MLDVLEAFLNFHGHIYLR-LDGTTKVDQRQVLMERFNMDARIFCFIL 111 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~---~~~~l~~~l~~~~~~~~~-~~g~~~~~~r~~~~~~f~~~~~~~vll~ 111 (160)
.++|...+.++.-.+...|.|+.+.|-.+- ..|.|...-.+.++++.. ++...+..--.+-+++|. +++..++|+
T Consensus 111 G~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK-ke~fdvIIv 189 (483)
T KOG0780|consen 111 GSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK-KENFDVIIV 189 (483)
T ss_pred CCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH-hcCCcEEEE
Confidence 466777777777777777777776665322 233333333334554332 233333344566778887 566666776
Q ss_pred ecc
Q psy13224 112 STR 114 (160)
Q Consensus 112 ~~~ 114 (160)
.|.
T Consensus 190 DTS 192 (483)
T KOG0780|consen 190 DTS 192 (483)
T ss_pred eCC
Confidence 653
No 357
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=35.96 E-value=46 Score=25.91 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=31.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCCHHH
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTKVDQ 92 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~~~ 92 (160)
.++++++||..-.........|...|++ +..+.|+.....
T Consensus 170 kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~ 210 (314)
T PRK00142 170 KDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYG 210 (314)
T ss_pred CcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHH
Confidence 4579999998766677778888889995 778899876543
No 358
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=35.51 E-value=45 Score=20.67 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=29.4
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCeEE-EEECCCC
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYL-RLDGTTK 89 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~-~~~g~~~ 89 (160)
..++.++++|..-.....-...|...|+..+ .+.|+..
T Consensus 59 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~ 97 (110)
T COG0607 59 PDDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGID 97 (110)
T ss_pred CCCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcHH
Confidence 3467999999988887888889999998876 5555544
No 359
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=35.19 E-value=2.1e+02 Score=21.99 Aligned_cols=77 Identities=13% Similarity=0.149 Sum_probs=40.6
Q ss_pred HhcCCCeEEEEeccHHHHHHHHHHHHhcCCeE-EEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEE
Q psy13224 50 LKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIY-LRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTV 128 (160)
Q Consensus 50 ~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~-~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~v 128 (160)
+...|..+|.+|++......|....+. |..+ ++...+-+..+-..+..... ..+..+.+++-.++ |.-++.++.|
T Consensus 106 ~I~~g~~ILTh~~S~tv~~~l~~A~~~-gk~~~V~v~EsrP~~qG~~la~eL~-~~GI~vtlI~Dsa~--~~~m~~vd~V 181 (275)
T PRK08335 106 LIDDGDVIITHSFSSAVLEILKTAKRK-GKRFKVILTESAPDYEGLALANELE-FLGIEFEVITDAQL--GLFAKEATLA 181 (275)
T ss_pred HcCCCCEEEEECCcHHHHHHHHHHHHc-CCceEEEEecCCCchhHHHHHHHHH-HCCCCEEEEeccHH--HHHHHhCCEE
Confidence 345677899999987666666555433 3332 33444444344344455554 34555555543333 3234556666
Q ss_pred EE
Q psy13224 129 VF 130 (160)
Q Consensus 129 i~ 130 (160)
|.
T Consensus 182 iv 183 (275)
T PRK08335 182 LV 183 (275)
T ss_pred EE
Confidence 54
No 360
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=35.15 E-value=3.3e+02 Score=24.79 Aligned_cols=70 Identities=13% Similarity=-0.009 Sum_probs=45.5
Q ss_pred CCCccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHH----HHHhcCCeEEEEECCCCHHHHHHHH
Q psy13224 28 PDPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEA----FLNFHGHIYLRLDGTTKVDQRQVLM 97 (160)
Q Consensus 28 ~~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~----~l~~~~~~~~~~~g~~~~~~r~~~~ 97 (160)
.......++++|.....--+-.....|..+.|-+.+...+....+ ..+..|+.+..+.|+.+..+|....
T Consensus 97 G~Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y 170 (896)
T PRK13104 97 GNIAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY 170 (896)
T ss_pred CccccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh
Confidence 333445567888876443332223356788899988776554444 4445699999999999988875543
No 361
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=35.03 E-value=68 Score=20.81 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=22.3
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEecc
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQM 63 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~ 63 (160)
...+..+.++++.....+++|+|.|..
T Consensus 56 ~~~~~~~~~~i~~~~~~~~~VlVHC~~ 82 (133)
T PF00782_consen 56 LEHLDQAVEFIENAISEGGKVLVHCKA 82 (133)
T ss_dssp GGGHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHhhhhhhcccceeEEEeCC
Confidence 357778888998877888999999974
No 362
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=34.91 E-value=1.8e+02 Score=22.32 Aligned_cols=42 Identities=12% Similarity=0.005 Sum_probs=17.9
Q ss_pred EEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 58 LIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 58 lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
+|+|..+.....|...+.-. -+...+|-....+....+++..
T Consensus 28 ~i~~EDTR~t~kLL~~~~I~-~~~~~~~~hn~~~~~~~l~~~l 69 (276)
T TIGR00096 28 LFAEEDTRTSKLLLHLGIIA-TPKAFHIDNEFQEKQNLLAAKL 69 (276)
T ss_pred EEEecCchhHHHHHHhcCCC-CceEEEecccHhHHHHHHHHHH
Confidence 45555555544444444322 1233444444433333333333
No 363
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=34.91 E-value=1.6e+02 Score=20.91 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=31.8
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHH
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFL 74 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l 74 (160)
+++|.-.+..+.+.+...|.++++.+.+......|.+..
T Consensus 28 GtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~ 66 (196)
T PF13604_consen 28 GTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKT 66 (196)
T ss_dssp TSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhh
Confidence 578999999988888888889999999999888887775
No 364
>KOG0925|consensus
Probab=34.40 E-value=2.9e+02 Score=23.51 Aligned_cols=99 Identities=21% Similarity=0.152 Sum_probs=53.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHH----hc-----CCeEEEEECCCCHHHHHHHHHHh---ccCCCceEEEEecccccccc
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLN----FH-----GHIYLRLDGTTKVDQRQVLMERF---NMDARIFCFILSTRSGGVGI 120 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~----~~-----~~~~~~~~g~~~~~~r~~~~~~f---~~~~~~~vll~~~~~~~~Gl 120 (160)
..+-+++|-...+..+.--+.+. .. .+++..++ +++...+++-- .++...+-+++++..+.+.+
T Consensus 252 e~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsl 327 (699)
T KOG0925|consen 252 EPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSL 327 (699)
T ss_pred CCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheee
Confidence 34588899876665433333332 21 34455565 22222221111 01233566888999999999
Q ss_pred ccccCCEEEEeCC----CCCc-----------ChhhHHHHHHHhcCCCCc
Q psy13224 121 NLTGADTVVFYDS----DWNP-----------TMDAQAQDRCHRIGQTRD 155 (160)
Q Consensus 121 dl~~~~~vi~~~~----~~~~-----------~~~~Q~~gR~~R~gq~~~ 155 (160)
.+.++-+||=-.. .+|| -.-.|+.-|.+|.|++++
T Consensus 328 tidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~p 377 (699)
T KOG0925|consen 328 TIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 377 (699)
T ss_pred eeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCC
Confidence 9988877763222 1222 122356666666666665
No 365
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=34.23 E-value=91 Score=20.36 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=26.5
Q ss_pred CCCeEEEEeccHHH---------HHHHHHHHHh---cCCeEEEEECCCC
Q psy13224 53 GGHRVLIFTQMTRM---------LDVLEAFLNF---HGHIYLRLDGTTK 89 (160)
Q Consensus 53 ~~~k~lif~~~~~~---------~~~l~~~l~~---~~~~~~~~~g~~~ 89 (160)
....++||++.... +.++.+.|.. .+.++.++.|+..
T Consensus 74 ~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~ 122 (132)
T cd01446 74 ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFE 122 (132)
T ss_pred CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHH
Confidence 35689999986653 5667777776 4567888888865
No 366
>PRK06260 threonine synthase; Validated
Probab=34.14 E-value=2.5e+02 Score=22.55 Aligned_cols=68 Identities=12% Similarity=-0.075 Sum_probs=50.7
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCC-CHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTT-KVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~-~~~~r~~~~~~f 100 (160)
.++.|-|.+....++....+.+.+.||=+++-++...++..-...|+++.++-... ....+...+..|
T Consensus 93 nPTGSfKdRga~~~v~~a~~~g~~~vv~aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~~~k~~~~~~~ 161 (397)
T PRK06260 93 NPTGSFKDRGMTVGVTKALELGVKTVACASTGNTSASLAAYAARAGLKCYVLLPAGKVALGKLAQALLH 161 (397)
T ss_pred CCCcCcHHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEEeCCCccHHHHHHHHhc
Confidence 45568899998888888777777777777777888888888888899988877754 344455555555
No 367
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=33.75 E-value=2.6e+02 Score=22.72 Aligned_cols=113 Identities=15% Similarity=0.138 Sum_probs=61.0
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccc
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~ 115 (160)
.++=...|.+.+..+ +.++..+.|++--.......-.|-+.|-.++....-..... ..++.+..+-+..+..+.+..
T Consensus 61 ~nPT~~~lE~~~a~L-Eg~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~--~~~~~~l~~~gi~~~~~d~~~ 137 (396)
T COG0626 61 GNPTRDALEEALAEL-EGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTY--RLFEKILQKFGVEVTFVDPGD 137 (396)
T ss_pred CCccHHHHHHHHHHh-hCCCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHH--HHHHHHHHhcCeEEEEECCCC
Confidence 456677777777764 45678888887666554433333334433333222222221 122222222345555444433
Q ss_pred cccccc-cc-cCCEEEEeCCCCCcChhhHHHHHHHhcC
Q psy13224 116 GGVGIN-LT-GADTVVFYDSDWNPTMDAQAQDRCHRIG 151 (160)
Q Consensus 116 ~~~Gld-l~-~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 151 (160)
...+.- +. .-..+|++++|-||....+=+.++.|..
T Consensus 138 ~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A 175 (396)
T COG0626 138 DEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLA 175 (396)
T ss_pred hHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHH
Confidence 323332 23 3578999999999988776555555543
No 368
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=33.47 E-value=2.3e+02 Score=22.01 Aligned_cols=76 Identities=12% Similarity=0.135 Sum_probs=39.5
Q ss_pred hcCCCeEEEEeccHHHHHHHHHHHHh-cCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEE
Q psy13224 51 KAGGHRVLIFTQMTRMLDVLEAFLNF-HGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVV 129 (160)
Q Consensus 51 ~~~~~k~lif~~~~~~~~~l~~~l~~-~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi 129 (160)
...|..+|.+|++......|....+. ..+.+.+.. +-+..+-........ ..+..+.++.-.++ |.-++.++.|+
T Consensus 118 i~~g~~ILT~~~S~tv~~~l~~A~~~~k~~~V~v~E-srP~~~G~~~a~~L~-~~GI~vtlI~Dsav--~~~m~~vd~Vi 193 (310)
T PRK08535 118 IRDGDVIMTHCNSSAALSVIKTAHEQGKDIEVIATE-TRPRNQGHITAKELA-EYGIPVTLIVDSAV--RYFMKDVDKVV 193 (310)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHHHCCCeEEEEEec-CCchhhHHHHHHHHH-HCCCCEEEEehhHH--HHHHHhCCEEE
Confidence 35677899999987777777665544 234443333 333333233333333 34455555443333 33345566555
Q ss_pred E
Q psy13224 130 F 130 (160)
Q Consensus 130 ~ 130 (160)
.
T Consensus 194 v 194 (310)
T PRK08535 194 V 194 (310)
T ss_pred E
Confidence 4
No 369
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=33.46 E-value=1.7e+02 Score=20.40 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCC--CHHHH--HHHHHHhc
Q psy13224 43 LDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTT--KVDQR--QVLMERFN 101 (160)
Q Consensus 43 l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~--~~~~r--~~~~~~f~ 101 (160)
..++|+.+.+.|-++.+.+.-.. .......+..|+.-..+.+.. +|..+ ..+++.+.
T Consensus 132 ~~~~l~~L~~~Gi~~~i~TGD~~--~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~ 192 (215)
T PF00702_consen 132 AKEALQELKEAGIKVAILTGDNE--STASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQ 192 (215)
T ss_dssp HHHHHHHHHHTTEEEEEEESSEH--HHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHT
T ss_pred hhhhhhhhhccCcceeeeecccc--ccccccccccccccccccccccccccchhHHHHHHHHh
Confidence 45566666666767777774322 223333344566445555666 77777 78888875
No 370
>PLN02522 ATP citrate (pro-S)-lyase
Probab=33.21 E-value=3.2e+02 Score=23.63 Aligned_cols=60 Identities=13% Similarity=-0.011 Sum_probs=44.0
Q ss_pred CeEEEEeccHHHHHHHHHHHHhc--CCeEEEEECCCCH--HHHHHHHHHhccCCCceEEEEecc
Q psy13224 55 HRVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDGTTKV--DQRQVLMERFNMDARIFCFILSTR 114 (160)
Q Consensus 55 ~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~~--~~r~~~~~~f~~~~~~~vll~~~~ 114 (160)
.++=+.+++-.....+...+... |++.++-.|+... .+-...++.|.+++..+++++...
T Consensus 168 G~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygE 231 (608)
T PLN02522 168 GSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGE 231 (608)
T ss_pred CcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEe
Confidence 46778888888888888888876 4555566665443 445778888988888888887755
No 371
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=33.19 E-value=1.6e+02 Score=20.84 Aligned_cols=35 Identities=14% Similarity=0.068 Sum_probs=21.8
Q ss_pred HhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEE
Q psy13224 50 LKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRL 84 (160)
Q Consensus 50 ~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~ 84 (160)
..+.|.++++.....+....+...|+..|+..-.+
T Consensus 134 ~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~ 168 (198)
T PRK00377 134 IIKKGGRIVIDAILLETVNNALSALENIGFNLEIT 168 (198)
T ss_pred HcCCCcEEEEEeecHHHHHHHHHHHHHcCCCeEEE
Confidence 34556677665655666677777777777654333
No 372
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=33.09 E-value=2.5e+02 Score=22.35 Aligned_cols=64 Identities=30% Similarity=0.401 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHhcCC-CeEEEEeccHH-----HHHHHHHHHHhcCCeEEEEECCC---CHHHHHHHHHHhc
Q psy13224 38 GKLQSLDVILRKLKAGG-HRVLIFTQMTR-----MLDVLEAFLNFHGHIYLRLDGTT---KVDQRQVLMERFN 101 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~-~k~lif~~~~~-----~~~~l~~~l~~~~~~~~~~~g~~---~~~~r~~~~~~f~ 101 (160)
+-+..+.++++.+...| ++++|.+.... ..+.+.+.|+..++.+..+.+.. +.+.-.+..+.++
T Consensus 9 g~~~~l~~~l~~~~~~g~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~ 81 (383)
T cd08186 9 GAIEKIGEILKDLKSKGISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGR 81 (383)
T ss_pred CHHHHHHHHHHHhcccCCCEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 44555555555432223 46666665321 13566677776777666665432 2233344444443
No 373
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=32.90 E-value=1.2e+02 Score=19.15 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=23.6
Q ss_pred CCeEEEEecc-----HHHHHHHHHHHHhcCC---eEEEEECCCC
Q psy13224 54 GHRVLIFTQM-----TRMLDVLEAFLNFHGH---IYLRLDGTTK 89 (160)
Q Consensus 54 ~~k~lif~~~-----~~~~~~l~~~l~~~~~---~~~~~~g~~~ 89 (160)
...+++||.. ...+.++...+++.|+ .+..+.|+..
T Consensus 66 ~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~ 109 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIK 109 (113)
T ss_pred CCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhh
Confidence 3578888864 2345677777777775 4566777654
No 374
>PLN02363 phosphoribosylanthranilate isomerase
Probab=32.89 E-value=2.2e+02 Score=21.55 Aligned_cols=52 Identities=13% Similarity=0.094 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhcC-CCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHH
Q psy13224 40 LQSLDVILRKLKAG-GHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQR 93 (160)
Q Consensus 40 ~~~l~~ll~~~~~~-~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r 93 (160)
.+...+|.+.+... -.+|-||.+. ..+.+.+.++..++.++-+||..+++.-
T Consensus 85 ~e~a~~I~~~l~~~~~~~VgVfv~~--~~~~I~~~~~~~~ld~VQLHG~e~~~~~ 137 (256)
T PLN02363 85 LSVAKEISQVAREGGAKPVGVFVDD--DANTILRAADSSDLELVQLHGNGSRAAF 137 (256)
T ss_pred HHHHHHHHHhccccCccEEEEEeCC--CHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 34455555543322 3468899874 4467888888889999999998886543
No 375
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=32.74 E-value=2.3e+02 Score=21.88 Aligned_cols=68 Identities=9% Similarity=-0.103 Sum_probs=51.5
Q ss_pred ccccCchHHHHHHHHHHHh-cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLK-AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~-~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
.+..|-|.+....++..+. +.+.+.+|=+++-++...+.-.-...|+++.++-....+..+...++.|
T Consensus 44 nptGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~ 112 (317)
T TIGR02991 44 QTTGSFKLRGATNAVLSLSDTQRAAGVVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRL 112 (317)
T ss_pred CCCCCcHHHHHHHHHHhhhHhccCCeEEEECCCHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHc
Confidence 4456889999888887654 2334456666667788888888888899998888877777888888887
No 376
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=32.69 E-value=2.6e+02 Score=22.32 Aligned_cols=48 Identities=27% Similarity=0.319 Sum_probs=26.2
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEeccH----HHHHHHHHHHHhcCCeEEEEECCC
Q psy13224 38 GKLQSLDVILRKLKAGGHRVLIFTQMT----RMLDVLEAFLNFHGHIYLRLDGTT 88 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~k~lif~~~~----~~~~~l~~~l~~~~~~~~~~~g~~ 88 (160)
+-+..+.++++.+ +++++|.+... ...+.+.+.|+..++.+..+.+..
T Consensus 9 g~l~~l~~~~~~~---g~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~ 60 (386)
T cd08191 9 GQRRQLPRLAARL---GSRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVL 60 (386)
T ss_pred CHHHHHHHHHHHc---CCeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCC
Confidence 3444555555432 35666666432 234556666777777776666544
No 377
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=32.68 E-value=2.4e+02 Score=21.98 Aligned_cols=65 Identities=12% Similarity=0.062 Sum_probs=46.9
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEe--ccHHHHHHHHHHHHhcCCeEEEEECCCC--------HHHHHHHHHHh
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFT--QMTRMLDVLEAFLNFHGHIYLRLDGTTK--------VDQRQVLMERF 100 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~--~~~~~~~~l~~~l~~~~~~~~~~~g~~~--------~~~r~~~~~~f 100 (160)
.|-|.+++..++....+.|...|+-+ .+-++...++-.....|+++.++-+... +..+...+..|
T Consensus 47 gs~K~R~~~~~l~~a~~~G~~~vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~ 121 (337)
T TIGR01274 47 GGNKTRKLEYLIPDAQAQGCTTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIM 121 (337)
T ss_pred cchHHHHHHHHHHHHHHcCCCEEEECCCCcchHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHc
Confidence 56699999999998877777666644 3357788888888899999888766532 13455556666
No 378
>KOG0339|consensus
Probab=32.63 E-value=3.2e+02 Score=23.42 Aligned_cols=122 Identities=11% Similarity=0.112 Sum_probs=69.9
Q ss_pred ccccCchHHHHHHH-HHHH------h-cCCCeEEEEeccHHHHHHHHHHHH----hcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVI-LRKL------K-AGGHRVLIFTQMTRMLDVLEAFLN----FHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~l-l~~~------~-~~~~k~lif~~~~~~~~~l~~~l~----~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
....|+|.+++.-- +.++ . .+|.-.+|-+.+.+.+..+....+ .-|+.++.++|+.+..+..+.++
T Consensus 267 AktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk-- 344 (731)
T KOG0339|consen 267 AKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK-- 344 (731)
T ss_pred eeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh--
Confidence 34457888775432 2222 2 223355566777776555544333 34889999999999988877774
Q ss_pred ccCCCceEEEEecc-----ccccccccccCCEEEEeCCC--CCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 101 NMDARIFCFILSTR-----SGGVGINLTGADTVVFYDSD--WNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 101 ~~~~~~~vll~~~~-----~~~~Gldl~~~~~vi~~~~~--~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
.+.-++++.+. +---|+|+.+++++++-+.. ++..-+.|.-.=..-+...+++.+|
T Consensus 345 ---~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllF 407 (731)
T KOG0339|consen 345 ---EGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLF 407 (731)
T ss_pred ---cCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEe
Confidence 23333444432 12258899999999986542 3334444544433334444444433
No 379
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=32.53 E-value=2.5e+02 Score=22.08 Aligned_cols=62 Identities=15% Similarity=-0.041 Sum_probs=46.5
Q ss_pred CeEEEEeccHHHHHHHHHHHHhc--CCeEEEEECCCC--HHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 55 HRVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDGTTK--VDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 55 ~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~--~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
.++=|++++-.....+...+... |++.++-.|+.+ --+-..+++.|.+++..+.+++....+
T Consensus 170 G~VgiVSqSGtl~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~T~~Ivl~~E~g 235 (317)
T PTZ00187 170 GKIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEIG 235 (317)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCCEEEEEEeCCCCCCCCCHHHHHHHHhhCCCccEEEEEEecC
Confidence 46889999888888888888886 445555556553 355667899998888888888877765
No 380
>KOG1503|consensus
Probab=32.30 E-value=1.2e+02 Score=22.89 Aligned_cols=52 Identities=8% Similarity=0.003 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHH
Q psy13224 41 QSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQ 92 (160)
Q Consensus 41 ~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~ 92 (160)
..|.+.+.+.....+..+|....+..+..-..+-++..+..+++||+...++
T Consensus 153 pfllqyiqe~ipdyrnavivaksp~~akka~syaerlrlglavihge~k~~e 204 (354)
T KOG1503|consen 153 PFLLQYIQEEIPDYRNAVIVAKSPGVAKKAQSYAERLRLGLAVIHGEQKDTE 204 (354)
T ss_pred HHHHHHHHHhCccccceEEEecCcchhhHHHhHHHHHhhceeEeeccccccc
Confidence 3556666665555668888888888887777777777777889999876544
No 381
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=32.11 E-value=2.6e+02 Score=22.17 Aligned_cols=68 Identities=6% Similarity=-0.051 Sum_probs=53.8
Q ss_pred ccccCchHHHHHHHHHHHhcCCC-eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGH-RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~-k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
.++.|-|.+--...+..+.+.+. +.+|=++.-++...++-.-...|+++.++-....+.++...++.|
T Consensus 25 ~ptgS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~ 93 (380)
T TIGR01127 25 QKTGSFKIRGALNKIANLSEDQRQRGVVAASAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSY 93 (380)
T ss_pred CCCCCcHHHHHHHHHHhcchhccCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHC
Confidence 44667899988888877765553 556777777888889888888999988888877778888888888
No 382
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=31.90 E-value=1.6e+02 Score=23.35 Aligned_cols=45 Identities=11% Similarity=0.078 Sum_probs=30.0
Q ss_pred HHHHHHHHh-cCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECC
Q psy13224 43 LDVILRKLK-AGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGT 87 (160)
Q Consensus 43 l~~ll~~~~-~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~ 87 (160)
+.+.+.... ..++.+++||+.-.........|...|++ +..+.|+
T Consensus 45 l~~~~~~~~~~~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG 91 (376)
T PRK08762 45 LELRIETHLPDRDREIVLICASGTRSAHAAATLRELGYTRVASVAGG 91 (376)
T ss_pred HHHHHhhhcCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCc
Confidence 344444332 45678999999766566677888888885 5666664
No 383
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=31.80 E-value=92 Score=22.45 Aligned_cols=44 Identities=18% Similarity=0.116 Sum_probs=28.9
Q ss_pred ccCchHHHHHHHHHHHhcC-CCeEEEEeccHHHHHHHHHHHHhcCC
Q psy13224 35 YDCGKLQSLDVILRKLKAG-GHRVLIFTQMTRMLDVLEAFLNFHGH 79 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~~~-~~k~lif~~~~~~~~~l~~~l~~~~~ 79 (160)
.+++|.....+++...... |++++.++ +.+..+.+.+.++..|+
T Consensus 28 ~GsGKT~l~~q~l~~~~~~~ge~vlyvs-~ee~~~~l~~~~~s~g~ 72 (226)
T PF06745_consen 28 PGSGKTTLALQFLYNGLKNFGEKVLYVS-FEEPPEELIENMKSFGW 72 (226)
T ss_dssp TTSSHHHHHHHHHHHHHHHHT--EEEEE-SSS-HHHHHHHHHTTTS
T ss_pred CCCCcHHHHHHHHHHhhhhcCCcEEEEE-ecCCHHHHHHHHHHcCC
Confidence 3679999999999776667 88886555 45555666666665554
No 384
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=31.68 E-value=1.6e+02 Score=19.72 Aligned_cols=45 Identities=16% Similarity=0.106 Sum_probs=30.1
Q ss_pred ccccCchHHHHHHHHHHHhcCC--CeEEEEeccHHHHHHHHHHHHhc
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGG--HRVLIFTQMTRMLDVLEAFLNFH 77 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~--~k~lif~~~~~~~~~l~~~l~~~ 77 (160)
...+++|...+...+......+ .++++.+.....+..+...+...
T Consensus 31 ~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 31 APTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred CCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHH
Confidence 3446789996666665554443 68889888777666665555543
No 385
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=31.14 E-value=76 Score=22.83 Aligned_cols=75 Identities=19% Similarity=0.060 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEEC--CCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 40 LQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDG--TTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 40 ~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g--~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
-..|.+.+... ..+.++++.+.. .....|.+.|+..|+.+..+.- .............+....-..+++.|+.++
T Consensus 104 s~~L~~~l~~~-~~~~~vl~~~g~-~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~l~~~~~~~v~ftS~~~~ 180 (231)
T PF02602_consen 104 SEGLAELLKEQ-LRGKRVLILRGE-GGRPDLPEKLREAGIEVTEVIVYETPPEELSPELKEALDRGEIDAVVFTSPSAV 180 (231)
T ss_dssp HHHHHGGHHHC-CTTEEEEEEESS-SSCHHHHHHHHHTTEEEEEEECEEEEEHHHHHHHHHHHHHTTTSEEEESSHHHH
T ss_pred HHHHHHHHHhh-CCCCeEEEEcCC-CccHHHHHHHHHCCCeEEEEEEeecccccchHHHHHHHHcCCCCEEEECCHHHH
Confidence 34555555542 234577776654 3356788999888866433322 244566777777776444455455555443
No 386
>PRK07920 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=31.14 E-value=2.4e+02 Score=21.51 Aligned_cols=54 Identities=17% Similarity=0.144 Sum_probs=31.0
Q ss_pred HHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 47 LRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 47 l~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
++...+.|+.+|+.+.+-..-+.....+...+.+...+.-......-...+.++
T Consensus 100 l~~a~~~gkgvIllt~H~GnwE~~~~~l~~~~~~~~~vyr~~~n~~~~~~~~~~ 153 (298)
T PRK07920 100 LDAALAAGRGVVLALPHSGNWDMAGAWLVQHHGPFTTVAERLKPESLYERFVAY 153 (298)
T ss_pred HHHHHhcCCCeEEEecCCCHHHHHHHHHHHcCCCeEEEEeccCCHHHHHHHHHH
Confidence 454555677788887766666666666666666655555444333333333334
No 387
>PRK05973 replicative DNA helicase; Provisional
Probab=31.10 E-value=1.2e+02 Score=22.60 Aligned_cols=44 Identities=16% Similarity=-0.002 Sum_probs=30.9
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCe
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHI 80 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~ 80 (160)
+++|.....+++......|+++++|+- .+..+.+.+.+...|+.
T Consensus 74 G~GKT~lalqfa~~~a~~Ge~vlyfSl-Ees~~~i~~R~~s~g~d 117 (237)
T PRK05973 74 GHGKTLLGLELAVEAMKSGRTGVFFTL-EYTEQDVRDRLRALGAD 117 (237)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEEEEE-eCCHHHHHHHHHHcCCC
Confidence 578999999999877777888877764 44445555555555553
No 388
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=30.84 E-value=2.3e+02 Score=21.29 Aligned_cols=39 Identities=13% Similarity=-0.054 Sum_probs=20.4
Q ss_pred hcCCCeEEEEeccHH--HHHHHHHHHHhcCCeEEEEECCCC
Q psy13224 51 KAGGHRVLIFTQMTR--MLDVLEAFLNFHGHIYLRLDGTTK 89 (160)
Q Consensus 51 ~~~~~k~lif~~~~~--~~~~l~~~l~~~~~~~~~~~g~~~ 89 (160)
.+.|-.+++.....+ ......+.+...++...++.+..+
T Consensus 25 ~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~ 65 (302)
T TIGR02634 25 ESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQNG 65 (302)
T ss_pred HhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 444667766544322 222333445556777777766443
No 389
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=30.43 E-value=2.5e+02 Score=21.58 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=30.8
Q ss_pred HHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhc
Q psy13224 46 ILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFN 101 (160)
Q Consensus 46 ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~ 101 (160)
.++...+.|+.+|+.+.+-..-+.+...+...+.+..++.-..+...-+..+.+.+
T Consensus 122 ~l~~a~~~gkgvI~~t~H~gnwE~~~~~~~~~~~~~~~vyr~~~n~~~d~~~~~~R 177 (314)
T PRK08943 122 ILEEARANGENVIFLVPHGWAIDIPAMLLASQGQPMAAMFHNQRNPLFDWLWNRVR 177 (314)
T ss_pred HHHHHHhCCCCEEEEEechhHHHHHHHHHHhcCCCccEEEeCCCCHHHHHHHHHHH
Confidence 34444456666777666554445555566666666555555544444455555554
No 390
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=30.39 E-value=1.4e+02 Score=21.85 Aligned_cols=30 Identities=30% Similarity=0.393 Sum_probs=26.1
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHH
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTR 65 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~ 65 (160)
.|+|...|.+.+......|.+++||....+
T Consensus 14 ~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 14 FSGKTEELLRRARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred cCcchHHHHHHHHHHHHcCCeEEEEecccc
Confidence 579999999999888888999999997555
No 391
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=30.19 E-value=2.5e+02 Score=21.45 Aligned_cols=65 Identities=11% Similarity=0.061 Sum_probs=46.3
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEe--ccHHHHHHHHHHHHhcCCeEEEEECCCC-HHHHHHHHHHh
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFT--QMTRMLDVLEAFLNFHGHIYLRLDGTTK-VDQRQVLMERF 100 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~--~~~~~~~~l~~~l~~~~~~~~~~~g~~~-~~~r~~~~~~f 100 (160)
.|-|.+.+..++....+.+.+.||=+ .+-++...++-.....|+++.++-.... ...+...+..|
T Consensus 37 gs~K~R~~~~~l~~a~~~g~~~vv~~g~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~ 104 (311)
T TIGR01275 37 GGNKIRKLEYLLADALSKGADTVITVGAIQSNHARATALAAKKLGLDAVLVLREKEELNGNLLLDKLM 104 (311)
T ss_pred CchhHHHHHHHHHHHHHcCCCEEEEcCCchhHHHHHHHHHHHHhCCceEEEecCCccCCCCHHHHHHc
Confidence 67899999999988777776555543 4467788888888888999877766543 33344445555
No 392
>PLN02565 cysteine synthase
Probab=29.94 E-value=2.7e+02 Score=21.68 Aligned_cols=72 Identities=13% Similarity=-0.015 Sum_probs=55.7
Q ss_pred CCccccccCchHHHHHHHHHHHhcCCC-----eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 29 DPRLIQYDCGKLQSLDVILRKLKAGGH-----RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 29 ~~~~~~~~~~K~~~l~~ll~~~~~~~~-----k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
.+...++.|-|.+.-..++..+.+.+. +.+|=++.-++...++-.-...|+++.++-....+..+...++.|
T Consensus 36 ~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~ 112 (322)
T PLN02565 36 LEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAF 112 (322)
T ss_pred ecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHc
Confidence 334455678899988888877655443 556767777888888888888999999888888888888899888
No 393
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=29.86 E-value=1e+02 Score=22.59 Aligned_cols=42 Identities=21% Similarity=0.115 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeE
Q psy13224 40 LQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIY 81 (160)
Q Consensus 40 ~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~ 81 (160)
..-..++|+.+.+.|.++.+.++.......+.+.|+..|+..
T Consensus 26 ~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~ 67 (242)
T TIGR01459 26 YPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINA 67 (242)
T ss_pred CccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCc
Confidence 344566777777788899999887766555567788877764
No 394
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=29.54 E-value=2.6e+02 Score=21.39 Aligned_cols=31 Identities=23% Similarity=0.075 Sum_probs=16.5
Q ss_pred HHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 70 LEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 70 l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
+....++.|+....+-..++..+|.+.+...
T Consensus 139 ~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~ 169 (265)
T COG0159 139 LLKAAEKHGIDPIFLVAPTTPDERLKKIAEA 169 (265)
T ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHh
Confidence 3444444555555555555555555555444
No 395
>PRK09492 treR trehalose repressor; Provisional
Probab=29.52 E-value=2.4e+02 Score=21.08 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCCeEEEEec-cH-------HHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecc
Q psy13224 43 LDVILRKLKAGGHRVLIFTQ-MT-------RMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTR 114 (160)
Q Consensus 43 l~~ll~~~~~~~~k~lif~~-~~-------~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~ 114 (160)
...+.+++.+.|.+-|.|.. .. ....-+.+.+++.|+......+..+.+.-......+.. +....+++..+
T Consensus 163 ~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~~~ai~~~~D 241 (315)
T PRK09492 163 IKLLMQRLYDQGHRHISYLGVDHSDVTTGKRRHQAYLAFCKQHKLTPVAALGGLSMQSGYELVAKVLT-PETTALVCATD 241 (315)
T ss_pred HHHHHHHHHHcCCCeEEEEcCCcccchhHHHHHHHHHHHHHHcCCCceeecCCCCchHHHHHHHHHhh-cCCCEEEEcCc
Confidence 34455666666765555542 11 22344566777788876555555554444444555542 34456777777
Q ss_pred cccccc
Q psy13224 115 SGGVGI 120 (160)
Q Consensus 115 ~~~~Gl 120 (160)
.++.|+
T Consensus 242 ~~A~g~ 247 (315)
T PRK09492 242 TLALGA 247 (315)
T ss_pred HHHHHH
Confidence 665443
No 396
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=29.36 E-value=1.6e+02 Score=26.39 Aligned_cols=45 Identities=18% Similarity=0.182 Sum_probs=38.2
Q ss_pred ccCchHHHHHHHHHHHh-cCCCeEEEEeccHHHHHHHHHHHHhcCC
Q psy13224 35 YDCGKLQSLDVILRKLK-AGGHRVLIFTQMTRMLDVLEAFLNFHGH 79 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~-~~~~k~lif~~~~~~~~~l~~~l~~~~~ 79 (160)
.+++|..++.+.|+... ..+.++++-+........+...|+..++
T Consensus 58 MGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l 103 (824)
T PF02399_consen 58 MGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGL 103 (824)
T ss_pred CCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCC
Confidence 36899999999998864 5578999999988889999999988765
No 397
>PRK14974 cell division protein FtsY; Provisional
Probab=29.34 E-value=2.9e+02 Score=21.84 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=31.0
Q ss_pred ccCchHHHHHHHHHHHhcCCCeEEEEecc---HHHHHHHHHHHHhcCCeEE
Q psy13224 35 YDCGKLQSLDVILRKLKAGGHRVLIFTQM---TRMLDVLEAFLNFHGHIYL 82 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~~~~~k~lif~~~---~~~~~~l~~~l~~~~~~~~ 82 (160)
.+++|.-.+..+...+...+.++++.... ....+.+...-...|+++.
T Consensus 149 ~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~ 199 (336)
T PRK14974 149 NGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVI 199 (336)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCcee
Confidence 35789999998888777777777654432 2334555555555666654
No 398
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=29.17 E-value=72 Score=23.05 Aligned_cols=88 Identities=11% Similarity=0.105 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCCCeEEEEeccHH-----HHHHHHHHHHhcCCeEEEEECCCCH---HHHHHHHHHhcc----CCCceEE
Q psy13224 42 SLDVILRKLKAGGHRVLIFTQMTR-----MLDVLEAFLNFHGHIYLRLDGTTKV---DQRQVLMERFNM----DARIFCF 109 (160)
Q Consensus 42 ~l~~ll~~~~~~~~k~lif~~~~~-----~~~~l~~~l~~~~~~~~~~~g~~~~---~~r~~~~~~f~~----~~~~~vl 109 (160)
.-.+|+......|.++..++-... ....|++-+.-.....+.+.|+.+. ..+..++++-+. .+.+.-+
T Consensus 118 vA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk~k~~qy~Kt~~i~~~~~~IhYGDSD~Di 197 (237)
T COG3700 118 VARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGDKPKPGQYTKTQWIQDKNIRIHYGDSDNDI 197 (237)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccCCCCcccccccHHHHhcCceEEecCCchhh
Confidence 346677666677777765553221 2344555554456667888887652 234445544331 1333346
Q ss_pred EEeccccccccccccCCEEE
Q psy13224 110 ILSTRSGGVGINLTGADTVV 129 (160)
Q Consensus 110 l~~~~~~~~Gldl~~~~~vi 129 (160)
...-+++.+|+-+-++.+--
T Consensus 198 ~AAkeaG~RgIRilRAaNST 217 (237)
T COG3700 198 TAAKEAGARGIRILRAANST 217 (237)
T ss_pred hHHHhcCccceeEEecCCcc
Confidence 77778889999887766543
No 399
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=29.01 E-value=1.2e+02 Score=17.36 Aligned_cols=41 Identities=7% Similarity=0.126 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEE
Q psy13224 43 LDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRL 84 (160)
Q Consensus 43 l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~ 84 (160)
+.+.++. ...|+.+.|.++......-+..+++..|+.+..+
T Consensus 17 ~~~~l~~-l~~G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~ 57 (70)
T PF01206_consen 17 AKKALKE-LPPGEVLEVLVDDPAAVEDIPRWCEENGYEVVEV 57 (70)
T ss_dssp HHHHHHT-SGTT-EEEEEESSTTHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHh-cCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence 3444544 3567788899999999999999999999887665
No 400
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=28.82 E-value=2.5e+02 Score=21.04 Aligned_cols=102 Identities=15% Similarity=0.132 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCCCeEEEEeccHH-HHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccccccc
Q psy13224 42 SLDVILRKLKAGGHRVLIFTQMTR-MLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGI 120 (160)
Q Consensus 42 ~l~~ll~~~~~~~~k~lif~~~~~-~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gl 120 (160)
.+..+-+.+.+.|..+++++...+ ..+...+.|...++.-.++.+.....+. +...... +..++++.......
T Consensus 19 ii~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~~~~~---l~~~~~~-~iPvV~~~~~~~~~-- 92 (279)
T PF00532_consen 19 IIRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASSENDDEE---LRRLIKS-GIPVVLIDRYIDNP-- 92 (279)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESSSCTCHH---HHHHHHT-TSEEEEESS-SCTT--
T ss_pred HHHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecccCChHH---HHHHHHc-CCCEEEEEeccCCc--
Confidence 344444555567778877654322 2224445566667777777766554222 2222212 44445543222111
Q ss_pred ccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCc
Q psy13224 121 NLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRD 155 (160)
Q Consensus 121 dl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~ 155 (160)
..++.|.. | +...-.++..+....|.+++
T Consensus 93 --~~~~~V~~-D---~~~a~~~a~~~Li~~Gh~~~ 121 (279)
T PF00532_consen 93 --EGVPSVYI-D---NYEAGYEATEYLIKKGHRRP 121 (279)
T ss_dssp --CTSCEEEE-E---HHHHHHHHHHHHHHTTCCST
T ss_pred --ccCCEEEE-c---chHHHHHHHHHHHhcccCCe
Confidence 13444433 2 22233466666677776663
No 401
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=28.80 E-value=1.1e+02 Score=16.77 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=33.5
Q ss_pred EEEec-cHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhc
Q psy13224 58 LIFTQ-MTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFN 101 (160)
Q Consensus 58 lif~~-~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~ 101 (160)
++|+. .+..+....+.|+..|+++..++=...++.++.+.+...
T Consensus 2 ~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g 46 (60)
T PF00462_consen 2 VVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSG 46 (60)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHS
T ss_pred EEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcC
Confidence 45554 445688899999999999999988888777776666653
No 402
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=28.57 E-value=2.8e+02 Score=21.52 Aligned_cols=65 Identities=14% Similarity=0.027 Sum_probs=44.7
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEE--eccHHHHHHHHHHHHhcCCeEEEEECCCCHHH-HHHHHHHh
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIF--TQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQ-RQVLMERF 100 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif--~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~-r~~~~~~f 100 (160)
.+-|.+.+..++....+.|.+.||. +.+-++...++-.-...|+++.++-......+ +....+.|
T Consensus 51 gg~K~R~~~~~l~~a~~~G~~~vv~~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~ 118 (329)
T PRK14045 51 GGNKIRKLEYLLGDALSRGADVVITVGAVHSNHAFVTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIM 118 (329)
T ss_pred CcchHHHHHhHHHHHHHcCCCEEEEeCccHHHHHHHHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHC
Confidence 4689999999998877777666664 45667788888888888999766654432222 33344555
No 403
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=28.47 E-value=1e+02 Score=22.61 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=35.8
Q ss_pred CCCCccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCe
Q psy13224 27 FPDPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHI 80 (160)
Q Consensus 27 ~~~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~ 80 (160)
..+..+....+.+.+.+..++ ..+.+++++++....-..+++.|.+.|+.
T Consensus 117 ~~~~~~islHgr~~~~l~~~~----~~~~~~vil~~~~~~P~~IA~~L~~~G~~ 166 (210)
T COG2241 117 LQDTEVISLHGRPVELLRPLL----ENGRRLVILTPDDFGPAEIAKLLTENGIG 166 (210)
T ss_pred hHHeEEEEecCCCHHHHHHHH----hCCceEEEeCCCCCCHHHHHHHHHhCCCC
Confidence 344444444445666555554 46789999999998899999999999874
No 404
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=28.47 E-value=2.7e+02 Score=21.29 Aligned_cols=57 Identities=16% Similarity=0.121 Sum_probs=33.1
Q ss_pred HHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhcc
Q psy13224 46 ILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNM 102 (160)
Q Consensus 46 ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~ 102 (160)
.++...+.|+.+|+.+.+-...+.....+...+.+...+.-..+...-+..+.+++.
T Consensus 113 ~l~~~~~~gkgvi~~t~H~gnwE~~~~~~~~~~~~~~~v~r~~~n~~~d~~~~~~R~ 169 (305)
T TIGR02208 113 HIEAAQAAGKPVIFLVPHGWAIDYAGLRLASQGLPMVTMFNNHKNPLFDWLWNRVRS 169 (305)
T ss_pred HHHHHHhCCCCEEEEecchhHHHHHHHHHHhcCCCceEEeeCCCCHHHHHHHHHHHh
Confidence 344445567777777766555555555666566666656555554444555555543
No 405
>KOG0951|consensus
Probab=28.31 E-value=3.9e+02 Score=25.72 Aligned_cols=98 Identities=13% Similarity=0.122 Sum_probs=60.9
Q ss_pred hcCCCeEEEEeccHHHHHHHHHHHH----------------------hcCCeEEEEECCCCHHHHHHHHHHhccCCCceE
Q psy13224 51 KAGGHRVLIFTQMTRMLDVLEAFLN----------------------FHGHIYLRLDGTTKVDQRQVLMERFNMDARIFC 108 (160)
Q Consensus 51 ~~~~~k~lif~~~~~~~~~l~~~l~----------------------~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~v 108 (160)
...+++.+||......+..++..|- +..++.-+-|.+++..+...+..-|. -+...+
T Consensus 1356 a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e-~g~i~v 1434 (1674)
T KOG0951|consen 1356 AGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFE-AGAIQV 1434 (1674)
T ss_pred hcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHh-cCcEEE
Confidence 4567899999988776555432221 11222222366777777777777776 567888
Q ss_pred EEEeccccccccccccCCEEEEeC-----------CCCCcChhhHHHHHHHhcCC
Q psy13224 109 FILSTRSGGVGINLTGADTVVFYD-----------SDWNPTMDAQAQDRCHRIGQ 152 (160)
Q Consensus 109 ll~~~~~~~~Gldl~~~~~vi~~~-----------~~~~~~~~~Q~~gR~~R~gq 152 (160)
++++.+. .|+-+. ++-|+..+ .++..+...|..|+++|.|+
T Consensus 1435 ~v~s~~~--~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~~k 1486 (1674)
T KOG0951|consen 1435 CVMSRDC--YGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGAGK 1486 (1674)
T ss_pred EEEEccc--cccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcCCcc
Confidence 8888773 344432 33333332 25667778899999999663
No 406
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=28.14 E-value=2.6e+02 Score=21.05 Aligned_cols=50 Identities=16% Similarity=0.113 Sum_probs=28.0
Q ss_pred hcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 51 KAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 51 ~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
.+.|+.+|+.+.+-..-+.....|...+.+...+........-.+.+.+.
T Consensus 117 ~~~g~gvIl~t~H~GnwE~~~~~l~~~~~~~~~i~~~~~n~~~~~~~~~~ 166 (295)
T PF03279_consen 117 LAEGRGVILLTGHFGNWELAGRALARRGPPVAVIYRPQKNPYIDRLLNKL 166 (295)
T ss_pred HhcCCCCEEeCcCcChHHHHHHHHHhhCCceEEEecCCccHhHHHHHHHH
Confidence 34566666666655555666666766666666665555333333333333
No 407
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=27.55 E-value=3.3e+02 Score=22.02 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECC
Q psy13224 39 KLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGT 87 (160)
Q Consensus 39 K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~ 87 (160)
=...+...+..+.+.|.|+|+..+- ..-+++.+.++..|.++..+..+
T Consensus 65 Gt~amEAav~sl~~pgdkVLv~~nG-~FG~R~~~ia~~~g~~v~~~~~~ 112 (383)
T COG0075 65 GTLAMEAAVASLVEPGDKVLVVVNG-KFGERFAEIAERYGAEVVVLEVE 112 (383)
T ss_pred cHHHHHHHHHhccCCCCeEEEEeCC-hHHHHHHHHHHHhCCceEEEeCC
Confidence 3445555666667778899888874 55678888888888887777764
No 408
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.31 E-value=1.2e+02 Score=17.00 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=14.7
Q ss_pred eEEEEeccHH-HHHHHHHHHHhcCC
Q psy13224 56 RVLIFTQMTR-MLDVLEAFLNFHGH 79 (160)
Q Consensus 56 k~lif~~~~~-~~~~l~~~l~~~~~ 79 (160)
++++|+.+.. .++.+...+++.|+
T Consensus 2 ~~ll~~g~~~~el~~~l~~~r~~~~ 26 (58)
T PF12646_consen 2 EFLLFSGFSGEELDKFLDALRKAGI 26 (58)
T ss_pred CEEEECCCCHHHHHHHHHHHHHcCC
Confidence 5667776655 35666666666655
No 409
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=27.23 E-value=2.4e+02 Score=20.21 Aligned_cols=41 Identities=17% Similarity=0.003 Sum_probs=22.5
Q ss_pred HHHhcCCCeEEEEecc--HHHHHHHHHHHHhcCCeEEEEECCC
Q psy13224 48 RKLKAGGHRVLIFTQM--TRMLDVLEAFLNFHGHIYLRLDGTT 88 (160)
Q Consensus 48 ~~~~~~~~k~lif~~~--~~~~~~l~~~l~~~~~~~~~~~g~~ 88 (160)
+.+.+.|-+++++... .+......+.|...+...+++.+..
T Consensus 23 ~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~~ 65 (259)
T cd01542 23 AALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLATT 65 (259)
T ss_pred HHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 4344567788776543 2222223333555677777776654
No 410
>PRK01415 hypothetical protein; Validated
Probab=27.16 E-value=1.2e+02 Score=22.80 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=32.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCCHH
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTKVD 91 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~~ 91 (160)
.++++++||..--.+......|...|+. +..+.|+...-
T Consensus 170 k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w 209 (247)
T PRK01415 170 KGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQY 209 (247)
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHH
Confidence 4679999998877788888999999996 67788887644
No 411
>PRK10867 signal recognition particle protein; Provisional
Probab=27.08 E-value=3.6e+02 Score=22.20 Aligned_cols=76 Identities=13% Similarity=0.126 Sum_probs=42.5
Q ss_pred cCchHHHHHHHHHHHhcC-CCeEEEEeccHH---HHHHHHHHHHhcCCeEEEEECCCCHHHH-HHHHHHhccCCCceEEE
Q psy13224 36 DCGKLQSLDVILRKLKAG-GHRVLIFTQMTR---MLDVLEAFLNFHGHIYLRLDGTTKVDQR-QVLMERFNMDARIFCFI 110 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~-~~k~lif~~~~~---~~~~l~~~l~~~~~~~~~~~g~~~~~~r-~~~~~~f~~~~~~~vll 110 (160)
+++|.-...++...+... |.++++.+--.. ..+.+..+-+..++++.......++.+- ...+.... ..+..++|
T Consensus 110 GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~-~~~~DvVI 188 (433)
T PRK10867 110 GAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAK-ENGYDVVI 188 (433)
T ss_pred CCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHH-hcCCCEEE
Confidence 578999999998877776 777776554222 2344555556667775544333343332 23444443 23344455
Q ss_pred Ee
Q psy13224 111 LS 112 (160)
Q Consensus 111 ~~ 112 (160)
+.
T Consensus 189 ID 190 (433)
T PRK10867 189 VD 190 (433)
T ss_pred Ee
Confidence 43
No 412
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=27.07 E-value=1.2e+02 Score=16.63 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=28.6
Q ss_pred EEEEe-ccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHH
Q psy13224 57 VLIFT-QMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVL 96 (160)
Q Consensus 57 ~lif~-~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~ 96 (160)
+++|+ .++..+..+...|.+.++.+..++-....+.+...
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l 42 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREEL 42 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHH
Confidence 45555 55667888999999999998888777665544433
No 413
>PRK08006 replicative DNA helicase; Provisional
Probab=27.04 E-value=3.7e+02 Score=22.33 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=40.1
Q ss_pred cCchHHHHHHHHHHHh-cCCCeEEEEeccHHHHHHHHHHHHh-cCCeEEEE-ECCCCHHHHHHHHHHh
Q psy13224 36 DCGKLQSLDVILRKLK-AGGHRVLIFTQMTRMLDVLEAFLNF-HGHIYLRL-DGTTKVDQRQVLMERF 100 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~-~~~~k~lif~~~~~~~~~l~~~l~~-~~~~~~~~-~g~~~~~~r~~~~~~f 100 (160)
+.+|......+..... ..+.+|++|+---...+.+.+++.. .+++...+ .|..+.++..++...+
T Consensus 234 gmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~a~ 301 (471)
T PRK08006 234 SMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTM 301 (471)
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHH
Confidence 4589999999987764 4577888887543334555555543 24443323 4667777766655444
No 414
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=27.04 E-value=1e+02 Score=21.71 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=24.9
Q ss_pred ccCchHHHHHHHHHHHhcCCCeEEEEeccHH
Q psy13224 35 YDCGKLQSLDVILRKLKAGGHRVLIFTQMTR 65 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~ 65 (160)
..|+|...|.+.+......+.++++|-+..+
T Consensus 10 M~sGKS~eLi~~~~~~~~~~~~v~~~kp~~D 40 (176)
T PF00265_consen 10 MFSGKSTELIRRIHRYEIAGKKVLVFKPAID 40 (176)
T ss_dssp TTSSHHHHHHHHHHHHHHTT-EEEEEEESTS
T ss_pred cCChhHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence 3589999999999888788899999987554
No 415
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=26.99 E-value=1.5e+02 Score=17.75 Aligned_cols=71 Identities=14% Similarity=0.253 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe
Q psy13224 40 LQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS 112 (160)
Q Consensus 40 ~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~ 112 (160)
+..|.++.+...+.++=.+|+.+..+..+...+.++..+.....+.- ....+..+.+.|.-..-...+|+.
T Consensus 20 ~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~i~~iP~~~lld 90 (95)
T PF13905_consen 20 LPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPF--DDDNNSELLKKYGINGIPTLVLLD 90 (95)
T ss_dssp HHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEET--TTHHHHHHHHHTT-TSSSEEEEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEee--CcchHHHHHHHCCCCcCCEEEEEC
Confidence 44555555554433445556666666667778888877444433332 223356677777544555555554
No 416
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=26.95 E-value=1.7e+02 Score=21.35 Aligned_cols=44 Identities=11% Similarity=-0.064 Sum_probs=29.6
Q ss_pred ccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCC
Q psy13224 35 YDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGH 79 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~ 79 (160)
.+++|.....+++......|++++.++- .+..+.+.+.+...|+
T Consensus 30 pGsGKT~la~~~l~~~~~~ge~~lyvs~-ee~~~~i~~~~~~~g~ 73 (237)
T TIGR03877 30 PGTGKSIFSQQFLWNGLQMGEPGIYVAL-EEHPVQVRRNMAQFGW 73 (237)
T ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEEEe-eCCHHHHHHHHHHhCC
Confidence 3578999999988776667888876664 4555555555554443
No 417
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=26.93 E-value=1.9e+02 Score=20.03 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEEC-----------CCCHHHHHHHHHHhc
Q psy13224 65 RMLDVLEAFLNFHGHIYLRLDG-----------TTKVDQRQVLMERFN 101 (160)
Q Consensus 65 ~~~~~l~~~l~~~~~~~~~~~g-----------~~~~~~r~~~~~~f~ 101 (160)
+.+..|.+.|...|.++..++| +.+.++|.+.+..+.
T Consensus 17 TlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~ 64 (156)
T PF01583_consen 17 TLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIA 64 (156)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHH
Confidence 4466777777777777777776 346778877766654
No 418
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=26.91 E-value=2.4e+02 Score=20.16 Aligned_cols=50 Identities=18% Similarity=0.336 Sum_probs=29.5
Q ss_pred cccCchHHHHHHHHHHHhcCCCeEEEEeccH---HHHHHHHHHHHhcCCeEEE
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGHRVLIFTQMT---RMLDVLEAFLNFHGHIYLR 83 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~---~~~~~l~~~l~~~~~~~~~ 83 (160)
+++++|.--+.+|-..+...+.++.+.|-.. ...+.|..+-+..++++..
T Consensus 9 ptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~ 61 (196)
T PF00448_consen 9 PTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYV 61 (196)
T ss_dssp STTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccch
Confidence 3467888888888877766677776666321 2345555555555555433
No 419
>PRK07411 hypothetical protein; Validated
Probab=26.80 E-value=1.1e+02 Score=24.52 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=30.8
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCH
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKV 90 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~ 90 (160)
.+.++++||..-.........|...|++...+.|+...
T Consensus 341 ~d~~IVvyC~~G~RS~~aa~~L~~~G~~~~~l~GG~~~ 378 (390)
T PRK07411 341 NGHRLIAHCKMGGRSAKALGILKEAGIEGTNVKGGITA 378 (390)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCeEEecchHHH
Confidence 45689999998777788888999999987778887654
No 420
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=26.76 E-value=3.5e+02 Score=23.70 Aligned_cols=103 Identities=14% Similarity=0.086 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCCCeEEEEec-------------cHHHHHHHHHHHHhcCCeEEEEEC--------------------CCC
Q psy13224 43 LDVILRKLKAGGHRVLIFTQ-------------MTRMLDVLEAFLNFHGHIYLRLDG--------------------TTK 89 (160)
Q Consensus 43 l~~ll~~~~~~~~k~lif~~-------------~~~~~~~l~~~l~~~~~~~~~~~g--------------------~~~ 89 (160)
+.+.++.+.+.|.+++..+. -+......-+.|++.|+++..++| +.+
T Consensus 409 ~~~~~~~~a~~G~~~l~v~~~~~~lG~i~l~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A~~~ 488 (673)
T PRK14010 409 LDALVKGVSKKGGTPLVVLEDNEILGVIYLKDVIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVAECK 488 (673)
T ss_pred HHHHHHHHHhCCCeEEEEEECCEEEEEEEeecCCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEEcCCC
Confidence 44455555555555544332 122344455566777888777776 578
Q ss_pred HHHHHHHHHHhccCCCceEEEEecc---------------ccccccccc-cCCEEEEeCCCCCcChhhHHHHHH
Q psy13224 90 VDQRQVLMERFNMDARIFCFILSTR---------------SGGVGINLT-GADTVVFYDSDWNPTMDAQAQDRC 147 (160)
Q Consensus 90 ~~~r~~~~~~f~~~~~~~vll~~~~---------------~~~~Gldl~-~~~~vi~~~~~~~~~~~~Q~~gR~ 147 (160)
|+++.+.++.+... ..++.+.-| +++.|-|.- .+..+|..|...+.-...-.+||-
T Consensus 489 PedK~~iV~~lQ~~--G~~VaMtGDGvNDAPALa~ADVGIAMgsGTdvAkeAADiVLldd~ls~Iv~av~~gR~ 560 (673)
T PRK14010 489 PEDKINVIREEQAK--GHIVAMTGDGTNDAPALAEANVGLAMNSGTMSAKEAANLIDLDSNPTKLMEVVLIGKQ 560 (673)
T ss_pred HHHHHHHHHHHHhC--CCEEEEECCChhhHHHHHhCCEEEEeCCCCHHHHHhCCEEEcCCCHHHHHHHHHHHHH
Confidence 88888899998532 233333322 233566653 666677777554444444445543
No 421
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=26.69 E-value=2.9e+02 Score=22.02 Aligned_cols=53 Identities=13% Similarity=0.043 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHhcCCC--eEEEEeccHHH-HHHHHHHHHhcCCeEEEEECCCCH
Q psy13224 38 GKLQSLDVILRKLKAGGH--RVLIFTQMTRM-LDVLEAFLNFHGHIYLRLDGTTKV 90 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~--k~lif~~~~~~-~~~l~~~l~~~~~~~~~~~g~~~~ 90 (160)
.+.+.+.+++++....|= -.+=||+.-.. ...+.+.|++.|+++..+++..+.
T Consensus 300 ~R~~~i~~lv~~~~~DGVI~~~~kfC~~~~~e~~~lk~~l~e~GIP~L~iE~D~~~ 355 (377)
T TIGR03190 300 TRYDHVLGLAKEYNVQGAIFLQQKFCDPHEGDYPDLKRHLEANGIPTLFLEFDITN 355 (377)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccCCCcchhhhHHHHHHHHHCCCCEEEEecCCCC
Confidence 477778888876544331 22223333222 345778888899999999998773
No 422
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=26.69 E-value=3.1e+02 Score=21.41 Aligned_cols=45 Identities=18% Similarity=0.011 Sum_probs=26.3
Q ss_pred eEEEEe--ccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 56 RVLIFT--QMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 56 k~lif~--~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
.+.+|. ...+.++.+.+.+++.+...++-=|+-+.-+-.+.+...
T Consensus 52 ~~~~~~~~p~~~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~ 98 (347)
T cd08172 52 FVLRYDGECSEENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADR 98 (347)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHH
Confidence 444564 334445566666666666766656666666666655544
No 423
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=26.65 E-value=2.2e+02 Score=19.62 Aligned_cols=37 Identities=16% Similarity=0.060 Sum_probs=24.4
Q ss_pred HHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEE
Q psy13224 49 KLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLD 85 (160)
Q Consensus 49 ~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~ 85 (160)
.+...|.++++..........+.+.|++.|+.+..+.
T Consensus 128 ~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 128 EILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred HhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEE
Confidence 3455666766665555546777888888888776553
No 424
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=26.25 E-value=2.2e+02 Score=19.84 Aligned_cols=47 Identities=19% Similarity=0.209 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecc
Q psy13224 67 LDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTR 114 (160)
Q Consensus 67 ~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~ 114 (160)
...+.+.++..|++.....|-....--..+...+. ..+..++|+|+|
T Consensus 88 ~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~-~~~~~v~IvS~D 134 (169)
T PF02739_consen 88 LPYIKELLEALGIPVLEVPGYEADDVIATLAKKAS-EEGFEVIIVSGD 134 (169)
T ss_dssp HHHHHHHHHHTTSEEEEETTB-HHHHHHHHHHHHH-HTTCEEEEE-SS
T ss_pred HHHHHHHHHHCCCCEecCCCCcHHHHHHHHHhhhc-cCCCEEEEEcCC
Confidence 44567777788999887776555454555666665 345677888876
No 425
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=26.10 E-value=1.6e+02 Score=17.79 Aligned_cols=52 Identities=15% Similarity=0.260 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEeccHH-------HHHHHHHHHHhcCCeEEEEECCCCHH
Q psy13224 39 KLQSLDVILRKLKAGGHRVLIFTQMTR-------MLDVLEAFLNFHGHIYLRLDGTTKVD 91 (160)
Q Consensus 39 K~~~l~~ll~~~~~~~~k~lif~~~~~-------~~~~l~~~l~~~~~~~~~~~g~~~~~ 91 (160)
-+..+.+.++.+...++.++||....+ ....+...+...... +++.+..+..
T Consensus 26 s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~-vi~~~~~~r~ 84 (91)
T PF02875_consen 26 SIRALLEALKELYPKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADV-VILTGDNPRA 84 (91)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSE-EEEETSBTTT
T ss_pred HHHHHHHHHHHhccCCcEEEEEccccccccccHHHHHHHHHHHHhcCCE-EEEcCCCCCC
Confidence 455555555554445567777774222 123444554443433 5666655543
No 426
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=26.09 E-value=1.3e+02 Score=16.95 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=28.1
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEE
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLD 85 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~ 85 (160)
..|+.+.|.++......-+..+++..|+.+....
T Consensus 24 ~~g~~l~v~~d~~~~~~~i~~~~~~~g~~~~~~~ 57 (69)
T cd00291 24 KSGEVLEVLLDDPGAVEDIPAWAKETGHEVLEVE 57 (69)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHHHcCCEEEEEE
Confidence 4577888888888888999999999999976553
No 427
>PRK08246 threonine dehydratase; Provisional
Probab=25.99 E-value=3.1e+02 Score=21.12 Aligned_cols=67 Identities=6% Similarity=-0.205 Sum_probs=49.7
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
.++.|-|.+....++..... +.+.+|-+..-++...+.-.-...|+++.++-....+..+...++.|
T Consensus 47 nptGS~K~R~a~~~~~~~~~-~~~~vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~ 113 (310)
T PRK08246 47 QHTGSFKARGAFNRLLAAPV-PAAGVVAASGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRAL 113 (310)
T ss_pred CCCCCCHHHHHHHHHHhhcc-cCCeEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHC
Confidence 45568899987777765544 44556666667888888888888899988888777777777777777
No 428
>PRK08198 threonine dehydratase; Provisional
Probab=25.99 E-value=3.5e+02 Score=21.68 Aligned_cols=69 Identities=9% Similarity=-0.052 Sum_probs=51.5
Q ss_pred cccccCchHHHHHHHHHHHhc-CCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 32 LIQYDCGKLQSLDVILRKLKA-GGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 32 ~~~~~~~K~~~l~~ll~~~~~-~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
.....|-|.+.....+..+.+ .+.+.+|=++.-++...++-.-...|+++.++-....+.++...++.|
T Consensus 46 ~nptGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~ 115 (404)
T PRK08198 46 LQRTGSFKIRGAYNKIASLSEEERARGVVAASAGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSY 115 (404)
T ss_pred CCCCCCCHHHHHHHHHHhccHhhcCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhC
Confidence 344567899977766665542 334566667777888888888888899998888888888888888888
No 429
>KOG0351|consensus
Probab=25.95 E-value=2e+02 Score=26.26 Aligned_cols=61 Identities=8% Similarity=0.121 Sum_probs=44.9
Q ss_pred EEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccC-CCceEEEEeccccc
Q psy13224 57 VLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMD-ARIFCFILSTRSGG 117 (160)
Q Consensus 57 ~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~-~~~~vll~~~~~~~ 117 (160)
+||.+...-.++.-...|...+++...+++.++..+|....+...++ +..+++.+++....
T Consensus 307 tvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~ 368 (941)
T KOG0351|consen 307 TVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVV 368 (941)
T ss_pred eEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhh
Confidence 34555555555555566677899999999999999999999999743 25777888776543
No 430
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=25.91 E-value=3e+02 Score=20.88 Aligned_cols=31 Identities=19% Similarity=0.087 Sum_probs=14.4
Q ss_pred HHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 70 LEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 70 l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
+.+.+++.|+....+-...++.+|-+.+.+.
T Consensus 136 ~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~ 166 (263)
T CHL00200 136 LISVCNLYNIELILLIAPTSSKSRIQKIARA 166 (263)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHHh
Confidence 3334444455555554444444454444433
No 431
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=25.76 E-value=1.1e+02 Score=24.17 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=29.2
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCCH
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTKV 90 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~ 90 (160)
.++++++||+.-.........|...|++ +..+.|+...
T Consensus 313 ~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~ 351 (355)
T PRK05597 313 AGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEG 351 (355)
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHH
Confidence 4568999999876777777888888886 5677887643
No 432
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=25.66 E-value=1.9e+02 Score=20.80 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=13.6
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEe
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFT 61 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~ 61 (160)
+++|.....+++......|++++.|+
T Consensus 26 G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 26 GTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34666666666655444455554443
No 433
>PRK06548 ribonuclease H; Provisional
Probab=25.65 E-value=2.4e+02 Score=19.68 Aligned_cols=41 Identities=12% Similarity=0.221 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHh---cCCe
Q psy13224 40 LQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNF---HGHI 80 (160)
Q Consensus 40 ~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~---~~~~ 80 (160)
+.++.+.|..+...+.++.||+++.-.++.+...+.. .|++
T Consensus 47 l~Aii~aL~~~~~~~~~v~I~TDS~yvi~~i~~W~~~Wk~~gWk 90 (161)
T PRK06548 47 LTAVRELLIATRHTDRPILILSDSKYVINSLTKWVYSWKMRKWR 90 (161)
T ss_pred HHHHHHHHHhhhcCCceEEEEeChHHHHHHHHHHHHHHHHCCCc
Confidence 3444445543333345799999998888888876653 4554
No 434
>PRK08506 replicative DNA helicase; Provisional
Probab=25.56 E-value=3.9e+02 Score=22.12 Aligned_cols=63 Identities=14% Similarity=0.040 Sum_probs=38.8
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHh-cCCeEE-EEECCCCHHHHHHHHH
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNF-HGHIYL-RLDGTTKVDQRQVLME 98 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~-~~~~~~-~~~g~~~~~~r~~~~~ 98 (160)
+.+|......+.......|.++++|+---...+.+.+++.. .+++.. ...|..+..+..++..
T Consensus 202 g~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~ 266 (472)
T PRK08506 202 SMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSD 266 (472)
T ss_pred CCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHH
Confidence 45899999999988766788888887543334444444443 244432 2346667666654433
No 435
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=25.56 E-value=2.6e+02 Score=20.09 Aligned_cols=43 Identities=26% Similarity=0.152 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEE
Q psy13224 39 KLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYL 82 (160)
Q Consensus 39 K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~ 82 (160)
....+.+.+......|+++++.+.. ...+.+.+.|...|..+.
T Consensus 110 ~~~~l~~~l~~~~~~~~~ili~~~~-~~~~~l~~~L~~~G~~v~ 152 (249)
T PRK05928 110 ESSELLLELPELLLKGKRVLYLRGN-GGREVLGDTLEERGAEVD 152 (249)
T ss_pred cChHHHHhChhhhcCCCEEEEECCC-CCHHHHHHHHHHCCCEEe
Confidence 3344444444332346787777664 446788889998887644
No 436
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=25.46 E-value=3.2e+02 Score=21.06 Aligned_cols=63 Identities=17% Similarity=0.086 Sum_probs=45.5
Q ss_pred CeEEEEeccHHHHHHHHHHHHhcCC--eEEEEECCCCH--HHHHHHHHHhccCCCceEEEEeccccc
Q psy13224 55 HRVLIFTQMTRMLDVLEAFLNFHGH--IYLRLDGTTKV--DQRQVLMERFNMDARIFCFILSTRSGG 117 (160)
Q Consensus 55 ~k~lif~~~~~~~~~l~~~l~~~~~--~~~~~~g~~~~--~~r~~~~~~f~~~~~~~vll~~~~~~~ 117 (160)
..+=+.+++-.....+..+....++ ..++-.|.... -+-...++.|..++..+++++.....+
T Consensus 144 G~ValiSQSG~l~~~~~~~a~~~giG~S~~Vs~Gn~a~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~ 210 (286)
T TIGR01019 144 GNVGIVSRSGTLTYEAVHQLTKAGFGQSTCVGIGGDPVNGTSFIDVLEAFEKDPETEAIVMIGEIGG 210 (286)
T ss_pred CcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCC
Confidence 4677888888888888888877755 55666665532 456778888887888888888766543
No 437
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=25.42 E-value=4.3e+02 Score=22.63 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEeccHH----HHHHHHHHHHhcCC
Q psy13224 39 KLQSLDVILRKLKAGGHRVLIFTQMTR----MLDVLEAFLNFHGH 79 (160)
Q Consensus 39 K~~~l~~ll~~~~~~~~k~lif~~~~~----~~~~l~~~l~~~~~ 79 (160)
.+....+.+.+....+++++||.++.. ..-.+...|+..|.
T Consensus 54 ~m~~a~~ri~~ai~~~e~I~I~gDyD~DGitstail~~~L~~~g~ 98 (575)
T PRK11070 54 GIEKAVELLYNALREGTRIIVVGDFDADGATSTALSVLALRSLGC 98 (575)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEecCccHHHHHHHHHHHHHHcCC
Confidence 455555666566678899999998755 34566778888776
No 438
>PRK01172 ski2-like helicase; Provisional
Probab=25.38 E-value=3.8e+02 Score=23.13 Aligned_cols=58 Identities=10% Similarity=-0.049 Sum_probs=38.6
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHH---hcCCeEEEEECCCCH
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLN---FHGHIYLRLDGTTKV 90 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~---~~~~~~~~~~g~~~~ 90 (160)
.+++++|.......+......+.++++.+.+...+....+.+. ..|..+....|+...
T Consensus 44 apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~ 104 (674)
T PRK01172 44 VPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDD 104 (674)
T ss_pred CCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCC
Confidence 5567899986544443333446788888888877666655554 347788788887653
No 439
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=25.32 E-value=2.9e+02 Score=20.53 Aligned_cols=85 Identities=20% Similarity=0.346 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc-CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccc
Q psy13224 41 QSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH-GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVG 119 (160)
Q Consensus 41 ~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~-~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~G 119 (160)
+...++++.+.+.+.+++++.. .+..+......+.. +.....+.|..+-.+-..+++.-. ++++.+++..=
T Consensus 140 ~~~~~l~~~l~~~~~~ivl~g~-~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~-------l~I~~Dsg~~H 211 (279)
T cd03789 140 ERFAALADRLLARGARVVLTGG-PAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARAD-------LVVTNDSGPMH 211 (279)
T ss_pred HHHHHHHHHHHHCCCEEEEEec-hhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCC-------EEEeeCCHHHH
Confidence 3445555555555667777665 44444444444332 234455667777776666664442 55555543211
Q ss_pred cc-cccCCEEEEeCC
Q psy13224 120 IN-LTGADTVVFYDS 133 (160)
Q Consensus 120 ld-l~~~~~vi~~~~ 133 (160)
+- ..+...+.+|.+
T Consensus 212 lA~a~~~p~i~l~g~ 226 (279)
T cd03789 212 LAAALGTPTVALFGP 226 (279)
T ss_pred HHHHcCCCEEEEECC
Confidence 11 235566666653
No 440
>PLN02591 tryptophan synthase
Probab=25.10 E-value=3e+02 Score=20.70 Aligned_cols=29 Identities=17% Similarity=0.038 Sum_probs=13.6
Q ss_pred HHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 72 AFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 72 ~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
..+++.|+....+-...+.++|.+.+...
T Consensus 125 ~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~ 153 (250)
T PLN02591 125 AEAAKNGIELVLLTTPTTPTERMKAIAEA 153 (250)
T ss_pred HHHHHcCCeEEEEeCCCCCHHHHHHHHHh
Confidence 33344444555554444444454444444
No 441
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=25.03 E-value=2.8e+02 Score=20.22 Aligned_cols=97 Identities=10% Similarity=0.056 Sum_probs=45.0
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCC------CHHHHHHHHHHhccCCCceEEE
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTT------KVDQRQVLMERFNMDARIFCFI 110 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~------~~~~r~~~~~~f~~~~~~~vll 110 (160)
..-+..|.+-++.-.-..+-++|+++..+ +.. .+..++.|+++..+.... ..++-.+.+..+ .. +.+++
T Consensus 10 Gsn~~al~~~~~~~~l~~~i~~visn~~~-~~~-~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~--~~-Dliv~ 84 (207)
T PLN02331 10 GSNFRAIHDACLDGRVNGDVVVVVTNKPG-CGG-AEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGA--GV-DFVLL 84 (207)
T ss_pred ChhHHHHHHHHHcCCCCeEEEEEEEeCCC-ChH-HHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhc--CC-CEEEE
Confidence 34555544444321112345667777543 222 334455688877654432 122333445555 22 33333
Q ss_pred Eec-cccccccccccCCEEEEeCCCCCcC
Q psy13224 111 LST-RSGGVGINLTGADTVVFYDSDWNPT 138 (160)
Q Consensus 111 ~~~-~~~~~Gldl~~~~~vi~~~~~~~~~ 138 (160)
+.. .....-+=-..-..+|+++|..-|.
T Consensus 85 agy~~il~~~~l~~~~~~~iNiHpSLLP~ 113 (207)
T PLN02331 85 AGYLKLIPVELVRAYPRSILNIHPALLPA 113 (207)
T ss_pred eCcchhCCHHHHhhCCCCEEEEeCccccC
Confidence 222 2222111112234799999877664
No 442
>PRK06110 hypothetical protein; Provisional
Probab=25.00 E-value=3.3e+02 Score=21.06 Aligned_cols=68 Identities=13% Similarity=0.010 Sum_probs=50.5
Q ss_pred ccccCchHHHHHHHHHHHhcCC--CeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGG--HRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~--~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
....|-|.+....++....+.+ .+.+|=+..-++...+.-.-...|+++.++-....+..+...+..|
T Consensus 46 nptGS~K~Rga~~~l~~a~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~ 115 (322)
T PRK06110 46 TPTGAFKVRGGLVYFDRLARRGPRVRGVISATRGNHGQSVAFAARRHGLAATIVVPHGNSVEKNAAMRAL 115 (322)
T ss_pred CCcCCcHHHHHHHHHHHhhhhcCCCceEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHc
Confidence 4556889999888887765443 3556656667788888888888899988887776666677777777
No 443
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=24.81 E-value=1.6e+02 Score=17.26 Aligned_cols=29 Identities=21% Similarity=-0.008 Sum_probs=20.1
Q ss_pred eEEEEeccHHHHHHHHHHHHhcCCeEEEE
Q psy13224 56 RVLIFTQMTRMLDVLEAFLNFHGHIYLRL 84 (160)
Q Consensus 56 k~lif~~~~~~~~~l~~~l~~~~~~~~~~ 84 (160)
..+|-+++...+-...+.|+..|+++..+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~li 31 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRLI 31 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEEe
Confidence 34444455666778888999998876655
No 444
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=24.58 E-value=2e+02 Score=18.35 Aligned_cols=21 Identities=10% Similarity=-0.027 Sum_probs=10.0
Q ss_pred HHHHHHHHHhcCCeEEEEECC
Q psy13224 67 LDVLEAFLNFHGHIYLRLDGT 87 (160)
Q Consensus 67 ~~~l~~~l~~~~~~~~~~~g~ 87 (160)
.+.+.+.+.+.+..++.+...
T Consensus 39 ~~~l~~~~~~~~pdvV~iS~~ 59 (119)
T cd02067 39 PEEIVEAAKEEDADAIGLSGL 59 (119)
T ss_pred HHHHHHHHHHcCCCEEEEecc
Confidence 334444445555555555443
No 445
>KOG4175|consensus
Probab=24.50 E-value=3e+02 Score=20.40 Aligned_cols=54 Identities=20% Similarity=0.307 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccc
Q psy13224 64 TRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGIN 121 (160)
Q Consensus 64 ~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gld 121 (160)
++.+..+.+..+++|+..+.+....+.++|.+++..-. +. .+.++ +.++.+|..
T Consensus 134 pEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~a--ds-FiYvV-SrmG~TG~~ 187 (268)
T KOG4175|consen 134 PEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAA--DS-FIYVV-SRMGVTGTR 187 (268)
T ss_pred hHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhh--cc-eEEEE-EeccccccH
Confidence 34566777888889999999999999999988887763 32 23333 355655544
No 446
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=24.37 E-value=3.5e+02 Score=21.14 Aligned_cols=78 Identities=12% Similarity=0.161 Sum_probs=43.1
Q ss_pred hcCCCeEEEEeccHHHHHHHHHHHHhc-CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEE
Q psy13224 51 KAGGHRVLIFTQMTRMLDVLEAFLNFH-GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVV 129 (160)
Q Consensus 51 ~~~~~k~lif~~~~~~~~~l~~~l~~~-~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi 129 (160)
...|+.++-.|++......|...-+.. .++ +.+..+-|..+-....+..++.+ ..+.++.-.++ |.-+..++.|+
T Consensus 117 i~dg~~IlTh~~S~~v~~~l~~A~~~~k~~~-V~VtESRP~~eG~~~ak~L~~~g-I~~~~I~Dsa~--~~~~~~vd~Vi 192 (301)
T COG1184 117 IHDGDVILTHSFSKTVLEVLKTAADRGKRFK-VIVTESRPRGEGRIMAKELRQSG-IPVTVIVDSAV--GAFMSRVDKVL 192 (301)
T ss_pred ccCCCEEEEecCcHHHHHHHHHhhhcCCceE-EEEEcCCCcchHHHHHHHHHHcC-CceEEEechHH--HHHHHhCCEEE
Confidence 446778888888877766666655543 244 44444445555555666665333 34333332222 55556666666
Q ss_pred EeC
Q psy13224 130 FYD 132 (160)
Q Consensus 130 ~~~ 132 (160)
.-.
T Consensus 193 vGa 195 (301)
T COG1184 193 VGA 195 (301)
T ss_pred ECc
Confidence 543
No 447
>PRK07048 serine/threonine dehydratase; Validated
Probab=24.24 E-value=3.4e+02 Score=20.94 Aligned_cols=68 Identities=4% Similarity=-0.061 Sum_probs=48.1
Q ss_pred ccccCchHHHHHHHHHHHhcC-CCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAG-GHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~-~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
..+.|-|.+.-..++.++... +.+.+|=+..-++...+.-.-...|+++.++-....+.++...++.|
T Consensus 49 nptGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~ 117 (321)
T PRK07048 49 QRMGAFKFRGAYNALSQFSPEQRRAGVVTFSSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGY 117 (321)
T ss_pred CCCCCeeHHHHHHHHHhhhHhhcCCcEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHC
Confidence 345677888766666655432 33344444457778888888888899988888877778888888888
No 448
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.17 E-value=2.8e+02 Score=20.00 Aligned_cols=46 Identities=9% Similarity=0.017 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCeEEEEeccH--HHHHHHHHHHHhcCCeEEEEECCCCH
Q psy13224 45 VILRKLKAGGHRVLIFTQMT--RMLDVLEAFLNFHGHIYLRLDGTTKV 90 (160)
Q Consensus 45 ~ll~~~~~~~~k~lif~~~~--~~~~~l~~~l~~~~~~~~~~~g~~~~ 90 (160)
.+-+...+.|.+++++.... +....+.+.+...++...++.+....
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~ 67 (263)
T cd06280 20 AVEDAAYRAGLRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPTRAT 67 (263)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 33344455677887775432 22334445566677777777775443
No 449
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=24.10 E-value=3.6e+02 Score=21.20 Aligned_cols=19 Identities=21% Similarity=0.086 Sum_probs=9.8
Q ss_pred HHHHHHHHHhcCCeEEEEE
Q psy13224 67 LDVLEAFLNFHGHIYLRLD 85 (160)
Q Consensus 67 ~~~l~~~l~~~~~~~~~~~ 85 (160)
.+.+...|++.++.+..++
T Consensus 38 ~~~v~~~L~~~~i~~~~~~ 56 (366)
T PF00465_consen 38 VDRVLDALEEAGIEVQVFD 56 (366)
T ss_dssp HHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHhhCceEEEEEe
Confidence 3445555555555555544
No 450
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=24.09 E-value=2.6e+02 Score=20.60 Aligned_cols=63 Identities=19% Similarity=0.134 Sum_probs=36.5
Q ss_pred cCchHHHHHHHHHHHhcC-CCeEEEEeccHHHHHHHHHHHHhc-CCeEEE-EECCCCHHHHHHHHH
Q psy13224 36 DCGKLQSLDVILRKLKAG-GHRVLIFTQMTRMLDVLEAFLNFH-GHIYLR-LDGTTKVDQRQVLME 98 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~-~~k~lif~~~~~~~~~l~~~l~~~-~~~~~~-~~g~~~~~~r~~~~~ 98 (160)
+.+|.....++...+... +.+|+.|+---...+...+.+... ++++.. .+|..+.++..++.+
T Consensus 29 g~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~~ 94 (259)
T PF03796_consen 29 GVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIRSGDLSDEEFERLQA 94 (259)
T ss_dssp TSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhhccccCHHHHHHHHH
Confidence 468999999999888766 478888886433333344444332 443222 234455565555443
No 451
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=23.97 E-value=1.2e+02 Score=21.84 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=29.7
Q ss_pred ccccCchHHHHHHHHHHHh-cCCCeEEEEeccHHHHHHH
Q psy13224 33 IQYDCGKLQSLDVILRKLK-AGGHRVLIFTQMTRMLDVL 70 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~-~~~~k~lif~~~~~~~~~l 70 (160)
-.++++|--.+..+++.+. ..+.+++||-..-+.....
T Consensus 30 G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~GEY~~~~ 68 (229)
T PF01935_consen 30 GTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHGEYASLF 68 (229)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCCcchhhh
Confidence 3457899999999999998 7778999998766644333
No 452
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=23.91 E-value=2.4e+02 Score=22.19 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCC--CCCcChhhHHH
Q psy13224 67 LDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDS--DWNPTMDAQAQ 144 (160)
Q Consensus 67 ~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~--~~~~~~~~Q~~ 144 (160)
+..=...|++.|++...+..-.+.....+.++.|+ ..+.++++ ....- +..+.+ .+| .|+...+.+-.
T Consensus 55 C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~-~aGIYvi~-Dl~~p--~~sI~r------~~P~~sw~~~l~~~~~ 124 (314)
T PF03198_consen 55 CKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFA-DAGIYVIL-DLNTP--NGSINR------SDPAPSWNTDLLDRYF 124 (314)
T ss_dssp HHHHHHHHHHHT-SEEEES---TTS--HHHHHHHH-HTT-EEEE-ES-BT--TBS--T------TS------HHHHHHHH
T ss_pred HHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHH-hCCCEEEE-ecCCC--CccccC------CCCcCCCCHHHHHHHH
Confidence 33334577788999999988888888899999997 45566555 22211 222222 234 78876665544
Q ss_pred HHHHh
Q psy13224 145 DRCHR 149 (160)
Q Consensus 145 gR~~R 149 (160)
.-+.-
T Consensus 125 ~vid~ 129 (314)
T PF03198_consen 125 AVIDA 129 (314)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 453
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=23.90 E-value=2e+02 Score=18.19 Aligned_cols=34 Identities=9% Similarity=0.143 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 67 LDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 67 ~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
++.+.+..+..+...++++...++.+...+-+.+
T Consensus 46 ~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~ 79 (95)
T PF13167_consen 46 VEEIKELIEELDADLVVFDNELSPSQQRNLEKAL 79 (95)
T ss_pred HHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHH
Confidence 5556666666777777777777777766666555
No 454
>PRK13556 azoreductase; Provisional
Probab=23.84 E-value=97 Score=22.24 Aligned_cols=30 Identities=40% Similarity=0.451 Sum_probs=23.1
Q ss_pred cccCCEEEEeCCCCCcChhh---HHHHHHHhcC
Q psy13224 122 LTGADTVVFYDSDWNPTMDA---QAQDRCHRIG 151 (160)
Q Consensus 122 l~~~~~vi~~~~~~~~~~~~---Q~~gR~~R~g 151 (160)
+..++.||+..|-||.+... ..+.|+.|.|
T Consensus 87 l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g 119 (208)
T PRK13556 87 FLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAG 119 (208)
T ss_pred HHHCCEEEEeccccccCCcHHHHHHHHHHhcCC
Confidence 56889999999999966554 5677777764
No 455
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=23.63 E-value=4.2e+02 Score=21.81 Aligned_cols=78 Identities=13% Similarity=0.075 Sum_probs=41.0
Q ss_pred ccCchHHHHHHHHHHHhcCCCeEEEEeccH---HHHHHHHHHHHhcCCeEEEEECCCCH-HHHHHHHHHhccCCCceEEE
Q psy13224 35 YDCGKLQSLDVILRKLKAGGHRVLIFTQMT---RMLDVLEAFLNFHGHIYLRLDGTTKV-DQRQVLMERFNMDARIFCFI 110 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~~~~~k~lif~~~~---~~~~~l~~~l~~~~~~~~~~~g~~~~-~~r~~~~~~f~~~~~~~vll 110 (160)
.+++|.-...+|...+...|.++++.+--+ ...+++...-+..++++.......++ .-....+..+. ..+..++|
T Consensus 109 ~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~-~~~~DvVi 187 (429)
T TIGR01425 109 QGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK-KENFDIII 187 (429)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH-hCCCCEEE
Confidence 357888888888777766677777665422 23444444444456665444333333 22233444443 22344455
Q ss_pred Eec
Q psy13224 111 LST 113 (160)
Q Consensus 111 ~~~ 113 (160)
+.|
T Consensus 188 IDT 190 (429)
T TIGR01425 188 VDT 190 (429)
T ss_pred EEC
Confidence 443
No 456
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=23.58 E-value=5.6e+02 Score=23.22 Aligned_cols=77 Identities=12% Similarity=0.023 Sum_probs=48.6
Q ss_pred hhhhhcCCCCccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHH----HHHHHHHHHhcCCeEEEEECCCCHHHHHHH
Q psy13224 21 SAMCTQFPDPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRM----LDVLEAFLNFHGHIYLRLDGTTKVDQRQVL 96 (160)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~----~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~ 96 (160)
..+.-.........++++|.....-.+--..-.|..+-|.+.+... .+++...++..|+++..+.|+.+.++|...
T Consensus 89 g~l~L~~G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~ 168 (830)
T PRK12904 89 GGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREA 168 (830)
T ss_pred hhHHhcCCchhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHh
Confidence 3333333344445567888876433221112246677777776653 455666666779999999999999888766
Q ss_pred H
Q psy13224 97 M 97 (160)
Q Consensus 97 ~ 97 (160)
.
T Consensus 169 y 169 (830)
T PRK12904 169 Y 169 (830)
T ss_pred c
Confidence 3
No 457
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=23.46 E-value=2e+02 Score=17.95 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 65 RMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 65 ~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
..+..+...|...++.+-.++=+.+++.|......-
T Consensus 17 ~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~ 52 (92)
T cd03030 17 KRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENV 52 (92)
T ss_pred HHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhc
Confidence 357788889999999999999988988888777665
No 458
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=23.42 E-value=99 Score=21.93 Aligned_cols=26 Identities=8% Similarity=0.149 Sum_probs=16.8
Q ss_pred cCCEEEEeCCCCCcChh-hHHHHHHHh
Q psy13224 124 GADTVVFYDSDWNPTMD-AQAQDRCHR 149 (160)
Q Consensus 124 ~~~~vi~~~~~~~~~~~-~Q~~gR~~R 149 (160)
..-.+||+|||+..... .+.+..+..
T Consensus 113 ~~fDiIflDPPY~~~~~~~~~l~~l~~ 139 (183)
T PF03602_consen 113 EKFDIIFLDPPYAKGLYYEELLELLAE 139 (183)
T ss_dssp S-EEEEEE--STTSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCcccchHHHHHHHHHHH
Confidence 34458999999999884 666666653
No 459
>KOG1180|consensus
Probab=23.16 E-value=3.5e+02 Score=23.40 Aligned_cols=73 Identities=7% Similarity=0.045 Sum_probs=46.7
Q ss_pred CeEEEEeccHHHHHHHHHHH--HhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccccc---c-cccccCCEE
Q psy13224 55 HRVLIFTQMTRMLDVLEAFL--NFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGV---G-INLTGADTV 128 (160)
Q Consensus 55 ~k~lif~~~~~~~~~l~~~l--~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~---G-ldl~~~~~v 128 (160)
.|+.||+.+.. +|+..++ -..++.++..+..+..+.-... .+ ..+...++.+...... . -..+.+.+|
T Consensus 116 ~k~~iFa~Tra--eWm~ta~gC~~q~ipvVT~Y~TLGeeal~hs---l~-Et~~~~i~T~~~LL~kl~~~l~~~~~vk~I 189 (678)
T KOG1180|consen 116 TKIAIFAETRA--EWMITAQGCFSQNIPVVTAYATLGEEALIHS---LN-ETESTAIFTDSELLPKLKAPLKQAKTVKHI 189 (678)
T ss_pred CeEEEEecchH--HHHHHHHHHHhcCCeEEEEehhcChhhhhhh---hc-cccceEEEeCHHHHHHHHHHHhccCceeEE
Confidence 47999999766 4554444 4579999999988886653333 33 2334446665554431 2 234688899
Q ss_pred EEeCC
Q psy13224 129 VFYDS 133 (160)
Q Consensus 129 i~~~~ 133 (160)
|++||
T Consensus 190 I~~d~ 194 (678)
T KOG1180|consen 190 IYFDP 194 (678)
T ss_pred EEecC
Confidence 99996
No 460
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=23.12 E-value=2.3e+02 Score=24.45 Aligned_cols=51 Identities=18% Similarity=0.047 Sum_probs=34.7
Q ss_pred HHHHHHHHHH-hcCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCCHH
Q psy13224 41 QSLDVILRKL-KAGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTKVD 91 (160)
Q Consensus 41 ~~l~~ll~~~-~~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~~ 91 (160)
+.+.+++..+ ...++.+++||+.-.......-.|+..|++ +..++|+.+..
T Consensus 209 ~el~~~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW 261 (610)
T PRK09629 209 QDMPEILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEW 261 (610)
T ss_pred HHHHHHHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHH
Confidence 3466666554 234568999999755555555667777886 77898887643
No 461
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=23.05 E-value=2e+02 Score=21.25 Aligned_cols=43 Identities=19% Similarity=0.040 Sum_probs=28.9
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCC
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGH 79 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~ 79 (160)
.++|.-...+++......|++++. ..+.+....+.+.+...|+
T Consensus 33 GsGKT~f~~qfl~~~~~~ge~vly-vs~~e~~~~l~~~~~~~g~ 75 (260)
T COG0467 33 GTGKTIFALQFLYEGAREGEPVLY-VSTEESPEELLENARSFGW 75 (260)
T ss_pred CCcHHHHHHHHHHHHHhcCCcEEE-EEecCCHHHHHHHHHHcCC
Confidence 578999999999888777877754 4444555555555544443
No 462
>KOG3432|consensus
Probab=22.84 E-value=2.3e+02 Score=18.58 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=25.1
Q ss_pred cCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe
Q psy13224 77 HGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS 112 (160)
Q Consensus 77 ~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~ 112 (160)
..-++.++...++.++-...++.|-..+...++|++
T Consensus 34 r~~Nf~vv~~~Tt~~eiedaF~~f~~RdDIaIiLIn 69 (121)
T KOG3432|consen 34 REPNFLVVDSKTTVEEIEDAFKSFTARDDIAIILIN 69 (121)
T ss_pred CCCCEEEEeccCCHHHHHHHHHhhccccCeEEEEEh
Confidence 345677777788888878888888765555556655
No 463
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=22.78 E-value=1.6e+02 Score=19.03 Aligned_cols=37 Identities=11% Similarity=0.003 Sum_probs=21.2
Q ss_pred CCCeEEEEec-cHHHHHHHHHHHHhc------------CC-eEEEEECCCC
Q psy13224 53 GGHRVLIFTQ-MTRMLDVLEAFLNFH------------GH-IYLRLDGTTK 89 (160)
Q Consensus 53 ~~~k~lif~~-~~~~~~~l~~~l~~~------------~~-~~~~~~g~~~ 89 (160)
.+..+++||. .-.........|... |+ ++..+.|+..
T Consensus 67 ~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~ 117 (121)
T cd01530 67 KRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK 117 (121)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH
Confidence 4568889996 433334444455442 44 4667777654
No 464
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.64 E-value=3.2e+02 Score=20.10 Aligned_cols=48 Identities=13% Similarity=-0.121 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCCCeEEEEeccH--HHHHHHHHHHHhcCCeEEEEECCC
Q psy13224 41 QSLDVILRKLKAGGHRVLIFTQMT--RMLDVLEAFLNFHGHIYLRLDGTT 88 (160)
Q Consensus 41 ~~l~~ll~~~~~~~~k~lif~~~~--~~~~~l~~~l~~~~~~~~~~~g~~ 88 (160)
..+..+.+.+.+.|..+++..... +....+.+.+...++...++.+..
T Consensus 17 ~~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~ 66 (280)
T cd06315 17 GVGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGVD 66 (280)
T ss_pred HHHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 344445455556677777654422 222234444566677777776543
No 465
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=22.59 E-value=1.6e+02 Score=19.80 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=21.2
Q ss_pred ccCchHHHHHHHHHHHhcCCCeEEEEecc
Q psy13224 35 YDCGKLQSLDVILRKLKAGGHRVLIFTQM 63 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~~~~~k~lif~~~ 63 (160)
.+++|.-.+..|+..+.+.|.++.++-+.
T Consensus 9 ~~sGKTTl~~~Li~~l~~~g~~v~~ik~~ 37 (140)
T PF03205_consen 9 KNSGKTTLIRKLINELKRRGYRVAVIKHT 37 (140)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred CCCCHHHHHHHHHHHHhHcCCceEEEEEc
Confidence 36799999999999998888877766543
No 466
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=22.42 E-value=3.8e+02 Score=20.85 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=41.0
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEe--ccHHHHHHHHHHHHhcCCeEEEEECC
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFT--QMTRMLDVLEAFLNFHGHIYLRLDGT 87 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~--~~~~~~~~l~~~l~~~~~~~~~~~g~ 87 (160)
.|.|.+++..++....+.|...|+-+ .+-++...++-.-...|+++.++-..
T Consensus 48 gs~K~R~~~~~l~~a~~~G~~~vvs~G~s~GN~g~alA~aa~~~G~~~~iv~~~ 101 (337)
T PRK12390 48 GGNKTRKLEYLVPDALAQGADTLVSIGGVQSNHTRQVAAVAAHLGMKCVLVQEN 101 (337)
T ss_pred cchhHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHHcCCeEEEEeCC
Confidence 56799999999998888887776655 44577888888888889998877543
No 467
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=22.35 E-value=2.3e+02 Score=18.26 Aligned_cols=105 Identities=15% Similarity=0.168 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCC-HHHHHHHHHHhcc-CCCceEEEEecccc
Q psy13224 39 KLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTK-VDQRQVLMERFNM-DARIFCFILSTRSG 116 (160)
Q Consensus 39 K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~-~~~r~~~~~~f~~-~~~~~vll~~~~~~ 116 (160)
|-..+.++...+...|..++.-.+ .+.+..+.+ ....+..++++.... .......++..+. +.+..++++.....
T Consensus 2 k~a~~~~l~~~L~~~~~~vv~~~~-~dd~~~~i~--~~~~i~avvi~~d~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~ 78 (115)
T PF03709_consen 2 KIAASRELAEALEQRGREVVDADS-TDDALAIIE--SFTDIAAVVISWDGEEEDEAQELLDKIRERNFGIPVFLLAERDT 78 (115)
T ss_dssp CHHHHHHHHHHHHHTTTEEEEESS-HHHHHHHHH--CTTTEEEEEEECHHHHHHHHHHHHHHHHHHSTT-EEEEEESCCH
T ss_pred ChHHHHHHHHHHHHCCCEEEEeCC-hHHHHHHHH--hCCCeeEEEEEcccccchhHHHHHHHHHHhCCCCCEEEEecCCC
Confidence 456677888887666666655444 443222222 234777888887600 0112233333332 46777888776555
Q ss_pred ccccc---cccCCEEEEeCCCCCcChhhHHHHHH
Q psy13224 117 GVGIN---LTGADTVVFYDSDWNPTMDAQAQDRC 147 (160)
Q Consensus 117 ~~Gld---l~~~~~vi~~~~~~~~~~~~Q~~gR~ 147 (160)
..-++ +..++.+|.+. ..++..+.-++.++
T Consensus 79 ~~~l~~~~l~~v~~~i~l~-~~t~~fia~rI~~A 111 (115)
T PF03709_consen 79 TEDLPAEVLGEVDGFIWLF-EDTAEFIARRIEAA 111 (115)
T ss_dssp HHCCCHHHHCCESEEEETT-TTTHHHHHHHHHHH
T ss_pred cccCCHHHHhhccEEEEec-CCCHHHHHHHHHHH
Confidence 55555 34777777773 44555554444443
No 468
>PRK04328 hypothetical protein; Provisional
Probab=22.31 E-value=2.1e+02 Score=21.18 Aligned_cols=43 Identities=12% Similarity=-0.011 Sum_probs=29.0
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCC
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGH 79 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~ 79 (160)
.++|.....+++......|++++.++ +.+..+.+.+.++..|+
T Consensus 33 GsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g~ 75 (249)
T PRK04328 33 GTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQFGW 75 (249)
T ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHcCC
Confidence 57899998998877666788875555 44455556655555554
No 469
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=22.16 E-value=3.6e+02 Score=20.57 Aligned_cols=65 Identities=14% Similarity=0.075 Sum_probs=46.1
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEe--ccHHHHHHHHHHHHhcCCeEEEEECCCCH--------HHHHHHHHHh
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFT--QMTRMLDVLEAFLNFHGHIYLRLDGTTKV--------DQRQVLMERF 100 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~--~~~~~~~~l~~~l~~~~~~~~~~~g~~~~--------~~r~~~~~~f 100 (160)
.|-|.+.+..++....+.+.+.+|=+ ..-++...++-.....|+++.++-....+ ..+...+..|
T Consensus 33 gs~K~R~~~~~l~~a~~~g~~~vv~~ggs~GN~g~alA~~a~~~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 107 (307)
T cd06449 33 GGNKIRKLEYLLPDALAKGADTLVTVGGIQSNHTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDRVGNILLSRIM 107 (307)
T ss_pred cchHHHHHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHHHHHcCCeEEEEecCCCCcccccccccccHHHHHHC
Confidence 46699999999988777776655544 35577888888888899998776665433 2345556666
No 470
>PF07013 DUF1314: Protein of unknown function (DUF1314); InterPro: IPR010741 This family consists of several alphaherpesvirus proteins of around 200 residues in length. They belong to the varicellovirus ORF2 family and their function is unknown.
Probab=22.11 E-value=2.1e+02 Score=20.25 Aligned_cols=33 Identities=30% Similarity=0.298 Sum_probs=24.2
Q ss_pred EEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 127 TVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 127 ~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+..+--+.-+-..+.+.|||+.=+|..++-.||
T Consensus 32 ~~~f~~~g~~~~~~~~~IGRA~a~g~~RkF~iy 64 (177)
T PF07013_consen 32 TGKFVRSGSSRLMPVHFIGRAYAIGSCRKFVIY 64 (177)
T ss_pred EEEEecCCCCceehhheehhhhccCCCceEEEE
Confidence 344444454556678999999999988887776
No 471
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=22.09 E-value=1.2e+02 Score=19.52 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=22.6
Q ss_pred cCCCeEEEEeccHHH--HHHHHHHHHhcCCeEEEEECCCC
Q psy13224 52 AGGHRVLIFTQMTRM--LDVLEAFLNFHGHIYLRLDGTTK 89 (160)
Q Consensus 52 ~~~~k~lif~~~~~~--~~~l~~~l~~~~~~~~~~~g~~~ 89 (160)
.++.-+|+++..-+. .-...+.++++|.++..+++...
T Consensus 46 ~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 46 TPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 344566677654332 23334446777888888888544
No 472
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=22.00 E-value=2.4e+02 Score=18.49 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=40.1
Q ss_pred CCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhcc----------CCCceEEEEeccccccccccc
Q psy13224 54 GHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNM----------DARIFCFILSTRSGGVGINLT 123 (160)
Q Consensus 54 ~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~----------~~~~~vll~~~~~~~~Gldl~ 123 (160)
...++|-.+...+++.+.+.+.+. +.+.++.......|+. .+..-++|+++.+.+=+.|+.
T Consensus 30 ~~P~iV~fdmk~tld~F~~q~~~~---------~lte~q~~~~~~rF~~~L~~~L~~yq~~H~~vILvspAVv~Ga~DIT 100 (112)
T TIGR02744 30 NSPVTVAFDMKQTLDAFFDSASQK---------KLSEAQQKALLGRFNALLEAELQAWQAQHHAIILVSPAVVSGAVDIT 100 (112)
T ss_pred CCCeEEEEecHHHHHHHHHHHhhc---------CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEEechhhhcCCCCCC
Confidence 345666666677788887766543 3667788887777762 245567888887776555543
No 473
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=21.98 E-value=3.7e+02 Score=20.57 Aligned_cols=78 Identities=10% Similarity=0.057 Sum_probs=52.3
Q ss_pred chHHHHHHHHHHHhcCCC--eEEEEeccHH----HHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEE
Q psy13224 38 GKLQSLDVILRKLKAGGH--RVLIFTQMTR----MLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFIL 111 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~--k~lif~~~~~----~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~ 111 (160)
-..+...++++.+.+.+. .+++++-++- -.+.+.+.+++.|+. ..+--.++.++........+.-+-..+.|+
T Consensus 76 ~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~Gvd-GlivpDLP~ee~~~~~~~~~~~gi~~I~lv 154 (265)
T COG0159 76 VTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVD-GLLVPDLPPEESDELLKAAEKHGIDPIFLV 154 (265)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCC-EEEeCCCChHHHHHHHHHHHHcCCcEEEEe
Confidence 366778888888775543 4555554444 256667777888988 556688999988887777764455666666
Q ss_pred ecccc
Q psy13224 112 STRSG 116 (160)
Q Consensus 112 ~~~~~ 116 (160)
++.+-
T Consensus 155 aPtt~ 159 (265)
T COG0159 155 APTTP 159 (265)
T ss_pred CCCCC
Confidence 65443
No 474
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=21.95 E-value=3.8e+02 Score=20.72 Aligned_cols=56 Identities=13% Similarity=0.029 Sum_probs=36.2
Q ss_pred ccccCchHHHHHHHHHHHh--cCCCeEEEEeccHHHHHHHHHHHHhc-CCeEEEEECCC
Q psy13224 33 IQYDCGKLQSLDVILRKLK--AGGHRVLIFTQMTRMLDVLEAFLNFH-GHIYLRLDGTT 88 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~--~~~~k~lif~~~~~~~~~l~~~l~~~-~~~~~~~~g~~ 88 (160)
.+++|+|.......+.... ..+.++++-..+...+..+.+.+... +-....+||..
T Consensus 6 apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~ 64 (358)
T TIGR01587 6 APTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSS 64 (358)
T ss_pred eCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccH
Confidence 3567899887555543333 23468888888888877777777664 44455566643
No 475
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=21.84 E-value=2.9e+02 Score=22.07 Aligned_cols=51 Identities=18% Similarity=0.098 Sum_probs=35.6
Q ss_pred chHHHHHHHHHHHhcC-CCeEEEEecc-------------------------HHHHHHHHHHHHhcCCeEEEEECCC
Q psy13224 38 GKLQSLDVILRKLKAG-GHRVLIFTQM-------------------------TRMLDVLEAFLNFHGHIYLRLDGTT 88 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~-~~k~lif~~~-------------------------~~~~~~l~~~l~~~~~~~~~~~g~~ 88 (160)
.+.+.+.++++.+++. +..+.|.... .+....+.+.|+..|+.++.++++.
T Consensus 199 nR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~ 275 (382)
T cd02931 199 NRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGS 275 (382)
T ss_pred HHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCC
Confidence 4788899999988764 4444444422 2345577888888899999888754
No 476
>PRK01355 azoreductase; Reviewed
Probab=21.81 E-value=1.1e+02 Score=21.73 Aligned_cols=31 Identities=23% Similarity=0.085 Sum_probs=22.4
Q ss_pred ccccCCEEEEeCCCCCcChhhH---HHHHHHhcC
Q psy13224 121 NLTGADTVVFYDSDWNPTMDAQ---AQDRCHRIG 151 (160)
Q Consensus 121 dl~~~~~vi~~~~~~~~~~~~Q---~~gR~~R~g 151 (160)
.+..++.+|+..|.|+.....| .+.|+.+.|
T Consensus 74 ~l~~AD~iV~~sP~y~~~ipa~LK~~iDrv~~~~ 107 (199)
T PRK01355 74 QLKSVDKVVISCPMTNFNVPATLKNYLDHIAVAN 107 (199)
T ss_pred HHHhCCEEEEEcCccccCChHHHHHHHHHHHhcC
Confidence 3568999999999999776665 455555443
No 477
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=21.64 E-value=1.7e+02 Score=18.49 Aligned_cols=58 Identities=17% Similarity=0.106 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHHhc----CCeEEEEECCCCHHH--HHHHHHHhccCCC-ceEEEEecccccccc
Q psy13224 63 MTRMLDVLEAFLNFH----GHIYLRLDGTTKVDQ--RQVLMERFNMDAR-IFCFILSTRSGGVGI 120 (160)
Q Consensus 63 ~~~~~~~l~~~l~~~----~~~~~~~~g~~~~~~--r~~~~~~f~~~~~-~~vll~~~~~~~~Gl 120 (160)
+.++.+||+..|++. .+.+..++=..++++ .....++-.+.+- ..++++.-...++|-
T Consensus 18 SkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~EGn 82 (93)
T PF07315_consen 18 SKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAEGN 82 (93)
T ss_dssp HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEESS
T ss_pred chhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEecCC
Confidence 356677777777764 455555555444432 2333333332222 445666766777663
No 478
>PF13173 AAA_14: AAA domain
Probab=21.48 E-value=2.4e+02 Score=18.21 Aligned_cols=78 Identities=14% Similarity=0.197 Sum_probs=44.8
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHH-H-----HHHHHHh---cCCeEEEEECCCCHHHHHHHHHHhccCC-C
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLD-V-----LEAFLNF---HGHIYLRLDGTTKVDQRQVLMERFNMDA-R 105 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~-~-----l~~~l~~---~~~~~~~~~g~~~~~~r~~~~~~f~~~~-~ 105 (160)
.++|.-.+.++++.+. ..+++ +|.+..+... . +.+.+.+ .+..++.++.-+...+-...++.+.+.. .
T Consensus 12 ~vGKTtll~~~~~~~~-~~~~~-~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~ 89 (128)
T PF13173_consen 12 GVGKTTLLKQLAKDLL-PPENI-LYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPN 89 (128)
T ss_pred CCCHHHHHHHHHHHhc-ccccc-eeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhccHHHHHHHHHHhccC
Confidence 4789999999998766 22333 4443332211 1 2233332 2567888888766666666677766444 4
Q ss_pred ceEEEEeccc
Q psy13224 106 IFCFILSTRS 115 (160)
Q Consensus 106 ~~vll~~~~~ 115 (160)
.++++..+..
T Consensus 90 ~~ii~tgS~~ 99 (128)
T PF13173_consen 90 IKIILTGSSS 99 (128)
T ss_pred ceEEEEccch
Confidence 5666655543
No 479
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=21.40 E-value=3.6e+02 Score=20.29 Aligned_cols=78 Identities=19% Similarity=0.166 Sum_probs=45.3
Q ss_pred CchHHHHHHHHHHHhcCC---CeEEEEeccHHHHHHHHHHHHhcCC-eEEEEECCCCHHHHHHHHHHhccCCCceEEEEe
Q psy13224 37 CGKLQSLDVILRKLKAGG---HRVLIFTQMTRMLDVLEAFLNFHGH-IYLRLDGTTKVDQRQVLMERFNMDARIFCFILS 112 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~---~k~lif~~~~~~~~~l~~~l~~~~~-~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~ 112 (160)
+.|.....++++.+.+.+ ..++|=....+++++ .|....+ ...+..|+.++++-.+++..|. . .-++++
T Consensus 137 ~nK~e~t~~ildi~~~~~l~~~lvvIDH~N~etv~~---vld~e~~vGlTvqPgKlt~~eAveIV~ey~--~--~r~iln 209 (254)
T COG1099 137 RNKKEATSKILDILIESGLKPSLVVIDHVNEETVDE---VLDEEFYVGLTVQPGKLTVEEAVEIVREYG--A--ERIILN 209 (254)
T ss_pred CcchhHHHHHHHHHHHcCCChhheehhcccHHHHHH---HHhccceEEEEecCCcCCHHHHHHHHHHhC--c--ceEEEe
Confidence 457777777776554333 244444433444442 3333211 2234558999999999999994 2 337788
Q ss_pred ccccccccc
Q psy13224 113 TRSGGVGIN 121 (160)
Q Consensus 113 ~~~~~~Gld 121 (160)
+++++.--|
T Consensus 210 SD~~s~~sd 218 (254)
T COG1099 210 SDAGSAASD 218 (254)
T ss_pred ccccccccc
Confidence 887764444
No 480
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=21.32 E-value=3.7e+02 Score=22.05 Aligned_cols=38 Identities=5% Similarity=-0.046 Sum_probs=20.8
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCC
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTK 89 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~ 89 (160)
+.|.++.......+..+.+.+.+++.+.+.++..+++.
T Consensus 62 ~~g~~v~~a~t~~eA~~~v~~i~~~~~~~~vv~~kS~~ 99 (432)
T TIGR00273 62 QRGGHVYYAKTAEEARKIIGKVAQEKNGKKVVKSKSMV 99 (432)
T ss_pred HCCCEEEEECCHHHHHHHHHHHHHHhCCCEEEEcCchH
Confidence 34445433334355566667777776666655554443
No 481
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=21.31 E-value=3.3e+02 Score=19.77 Aligned_cols=37 Identities=24% Similarity=0.228 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHhcCCeEEEEEC-----------CCCHHHHHHHHHH
Q psy13224 63 MTRMLDVLEAFLNFHGHIYLRLDG-----------TTKVDQRQVLMER 99 (160)
Q Consensus 63 ~~~~~~~l~~~l~~~~~~~~~~~g-----------~~~~~~r~~~~~~ 99 (160)
..+.+..+++.|.+.|+.+-+++| +-+.++|.+.+.+
T Consensus 36 KSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRR 83 (197)
T COG0529 36 KSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRR 83 (197)
T ss_pred HHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHH
Confidence 345688999999999999999999 4566777665443
No 482
>KOG1802|consensus
Probab=21.31 E-value=2.5e+02 Score=24.91 Aligned_cols=51 Identities=22% Similarity=0.211 Sum_probs=41.5
Q ss_pred cCchHHHHHHHHHHHhcC-CCeEEEEeccHHHHHHHHHHHHhcCCeEEEEEC
Q psy13224 36 DCGKLQSLDVILRKLKAG-GHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDG 86 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~-~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g 86 (160)
+.+|......++-.+.+. ..++||-+.+.-.+|-|++.+-+.|++++.+-+
T Consensus 435 GTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~tgLKVvRl~a 486 (935)
T KOG1802|consen 435 GTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKTGLKVVRLCA 486 (935)
T ss_pred CCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhcCceEeeeeh
Confidence 457887777777666544 459999999999999999999999999887765
No 483
>PRK13555 azoreductase; Provisional
Probab=21.30 E-value=1.4e+02 Score=21.74 Aligned_cols=30 Identities=33% Similarity=0.344 Sum_probs=22.3
Q ss_pred cccCCEEEEeCCCCCcChhh---HHHHHHHhcC
Q psy13224 122 LTGADTVVFYDSDWNPTMDA---QAQDRCHRIG 151 (160)
Q Consensus 122 l~~~~~vi~~~~~~~~~~~~---Q~~gR~~R~g 151 (160)
+..++.+++.-|-||..... ..+.|+.|.|
T Consensus 87 ~~~AD~lvi~~P~~n~~~Pa~LK~~iD~v~~~G 119 (208)
T PRK13555 87 FLEADKVVFAFPLWNFTVPAPLITYISYLSQAG 119 (208)
T ss_pred HHHcCEEEEEcCcccccchHHHHHHHHHHhcCC
Confidence 46788999999999865554 5677777764
No 484
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=21.16 E-value=1.5e+02 Score=19.38 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEecc
Q psy13224 39 KLQSLDVILRKLKAGGHRVLIFTQM 63 (160)
Q Consensus 39 K~~~l~~ll~~~~~~~~k~lif~~~ 63 (160)
-+....++++.....+++++|.|..
T Consensus 63 ~~~~~~~~i~~~~~~~~~VlVHC~~ 87 (138)
T smart00195 63 YFPEAVEFIEDAEKKGGKVLVHCQA 87 (138)
T ss_pred HHHHHHHHHHHHhcCCCeEEEECCC
Confidence 4466677777777788999999984
No 485
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=21.07 E-value=2.9e+02 Score=18.99 Aligned_cols=53 Identities=19% Similarity=0.103 Sum_probs=35.5
Q ss_pred eEEEEECCCCHHHHHHHHHHhccCCCceEEEEecc-cccccccc------ccCCEEEEeC
Q psy13224 80 IYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTR-SGGVGINL------TGADTVVFYD 132 (160)
Q Consensus 80 ~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~-~~~~Gldl------~~~~~vi~~~ 132 (160)
....++|.++.+-|..+.+.|+.-+..++++..-. +.+-|+-- ...+.+|-+|
T Consensus 51 DiLlVTG~vT~~~~e~lkk~Yea~PePKiViA~GaCa~~GGIf~~~~~v~gpvd~viPVD 110 (148)
T COG3260 51 DILLVTGAVTRQMREPLKKAYEAMPEPKIVIAVGACALSGGIFKDSYSVWGPVDKVIPVD 110 (148)
T ss_pred cEEEEeccccHHHHHHHHHHHHhCCCCcEEEEEcccccCCceecccccccccccceeEee
Confidence 46889999999999999999997677766554333 23333322 2456666555
No 486
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=21.05 E-value=6.2e+02 Score=22.86 Aligned_cols=107 Identities=8% Similarity=0.032 Sum_probs=61.9
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEe-ccHHHHHHHHHHHHhcCC--------------------eEEEEECCCCHHHHHH
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFT-QMTRMLDVLEAFLNFHGH--------------------IYLRLDGTTKVDQRQV 95 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~-~~~~~~~~l~~~l~~~~~--------------------~~~~~~g~~~~~~r~~ 95 (160)
.+|.+. .+.++.+++.|-++++.+ +...++..+++.+.-..- .-..+.++.+|+++.+
T Consensus 515 p~R~~~-~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~K~~ 593 (867)
T TIGR01524 515 PPKEST-KEAIAALFKNGINVKVLTGDNEIVTARICQEVGIDANDFLLGADIEELSDEELARELRKYHIFARLTPMQKSR 593 (867)
T ss_pred CCchhH-HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHHHHH
Confidence 455554 566667777776666555 455567777776643210 0114667889999999
Q ss_pred HHHHhccCCCceEEEEecc---------------cccccccc-ccCCEEEEeCCCCCcChhhHHHHH
Q psy13224 96 LMERFNMDARIFCFILSTR---------------SGGVGINL-TGADTVVFYDSDWNPTMDAQAQDR 146 (160)
Q Consensus 96 ~~~~f~~~~~~~vll~~~~---------------~~~~Gldl-~~~~~vi~~~~~~~~~~~~Q~~gR 146 (160)
+++.+... +. ++.+.-| +++.|-|. ..+..+|..|...+.-...=..||
T Consensus 594 iV~~lq~~-G~-vVam~GDGvNDapALk~AdVGIAmg~gtdvAk~aADiVLldd~~~~I~~ai~~gR 658 (867)
T TIGR01524 594 IIGLLKKA-GH-TVGFLGDGINDAPALRKADVGISVDTAADIAKEASDIILLEKSLMVLEEGVIEGR 658 (867)
T ss_pred HHHHHHhC-CC-EEEEECCCcccHHHHHhCCEEEEeCCccHHHHHhCCEEEecCChHHHHHHHHHHH
Confidence 99999633 22 3333322 33456665 366777777755443333333344
No 487
>KOG3201|consensus
Probab=20.97 E-value=3.1e+02 Score=19.68 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCeEEEEeccHH-HHHHHHHHHHhcCCeEEEEECCCC
Q psy13224 43 LDVILRKLKAGGHRVLIFTQMTR-MLDVLEAFLNFHGHIYLRLDGTTK 89 (160)
Q Consensus 43 l~~ll~~~~~~~~k~lif~~~~~-~~~~l~~~l~~~~~~~~~~~g~~~ 89 (160)
|.+-+..+....++.|+|+..+. .+..+.+..+..|+.+ .++...+
T Consensus 122 LvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v-~l~enyd 168 (201)
T KOG3201|consen 122 LVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTV-CLEENYD 168 (201)
T ss_pred HHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEE-EecccHh
Confidence 33444444555567888887654 3566666666667553 3444433
No 488
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=20.94 E-value=3.5e+02 Score=19.96 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=36.3
Q ss_pred CeEEEEecc-----------HHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhcc
Q psy13224 55 HRVLIFTQM-----------TRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNM 102 (160)
Q Consensus 55 ~k~lif~~~-----------~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~ 102 (160)
...||+++. ...++.|.+.|+..|+.+ .+.-..+..+=.+.+.+|..
T Consensus 9 g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V-~~~~dlt~~em~~~l~~~~~ 66 (241)
T smart00115 9 GLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEV-HVKNNLTAEEMLEELKEFAE 66 (241)
T ss_pred cEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHh
Confidence 366777764 347899999999999985 55677888888888888874
No 489
>KOG0921|consensus
Probab=20.71 E-value=1.6e+02 Score=26.92 Aligned_cols=95 Identities=22% Similarity=0.242 Sum_probs=51.3
Q ss_pred CCeEEEEeccHHHHHHHHHHHHhc-------CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccccccccc----
Q psy13224 54 GHRVLIFTQMTRMLDVLEAFLNFH-------GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINL---- 122 (160)
Q Consensus 54 ~~k~lif~~~~~~~~~l~~~l~~~-------~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl---- 122 (160)
.+-+++|-.-....-.|...|... .+.+...|.-....+..++.... +.+..-+++++..+..-+.+
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~--p~gv~kii~stniaetsiTidd~v 720 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPV--PEGVTKIILSTNIAETSITIDDVV 720 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcc--cccccccccccceeeEeeeeccee
Confidence 457888887766655555554432 44455666666666666555444 22333344444433333322
Q ss_pred -------------ccCCEEEEeCCCC-CcChhhHHHHHHHhc
Q psy13224 123 -------------TGADTVVFYDSDW-NPTMDAQAQDRCHRI 150 (160)
Q Consensus 123 -------------~~~~~vi~~~~~~-~~~~~~Q~~gR~~R~ 150 (160)
...+..+++...| +....+|+.||.+|.
T Consensus 721 ~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv 762 (1282)
T KOG0921|consen 721 YVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV 762 (1282)
T ss_pred EEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee
Confidence 2333444455444 455667999988764
No 490
>KOG0391|consensus
Probab=20.59 E-value=3.6e+02 Score=25.92 Aligned_cols=84 Identities=15% Similarity=0.088 Sum_probs=59.4
Q ss_pred cCchHHHHHHHHHHHhcC---CCeEEEEeccHHHHHHHHHHHHh-cCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEE
Q psy13224 36 DCGKLQSLDVILRKLKAG---GHRVLIFTQMTRMLDVLEAFLNF-HGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFIL 111 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~---~~k~lif~~~~~~~~~l~~~l~~-~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~ 111 (160)
+-+|.--...+|.++.-+ .+.=||.+.+...+.|-.++=+- -|+++..+.|+ +.+|..--+.|+......|+|+
T Consensus 644 GLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwcPglKILTYyGs--~kErkeKRqgW~kPnaFHVCIt 721 (1958)
T KOG0391|consen 644 GLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWCPGLKILTYYGS--HKERKEKRQGWAKPNAFHVCIT 721 (1958)
T ss_pred cccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhCCcceEeeecCC--HHHHHHHhhcccCCCeeEEeeh
Confidence 347888888888777533 34666777777777775554332 28999888885 4577778888885666888888
Q ss_pred eccccccccc
Q psy13224 112 STRSGGVGIN 121 (160)
Q Consensus 112 ~~~~~~~Gld 121 (160)
|+...-.++.
T Consensus 722 SYklv~qd~~ 731 (1958)
T KOG0391|consen 722 SYKLVFQDLT 731 (1958)
T ss_pred hhHHHHhHHH
Confidence 8887766655
No 491
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.57 E-value=1.2e+02 Score=19.37 Aligned_cols=35 Identities=9% Similarity=0.004 Sum_probs=17.8
Q ss_pred CCeEEEEeccHHH--HHHHHHHHHhcCCeEEEEECCC
Q psy13224 54 GHRVLIFTQMTRM--LDVLEAFLNFHGHIYLRLDGTT 88 (160)
Q Consensus 54 ~~k~lif~~~~~~--~~~l~~~l~~~~~~~~~~~g~~ 88 (160)
+.-+|+++.+-+. .-...+..+..|.+.+.+++..
T Consensus 47 ~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~ 83 (126)
T cd05008 47 DTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVV 83 (126)
T ss_pred CcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 3345555543332 2233344555677777776653
No 492
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=20.54 E-value=2.5e+02 Score=19.78 Aligned_cols=39 Identities=26% Similarity=0.216 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc
Q psy13224 39 KLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH 77 (160)
Q Consensus 39 K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~ 77 (160)
-...+..++..=.+.|+++++.+......+.+.+.|.+.
T Consensus 32 ~~~~~~~Fi~~GL~~ge~~l~v~~~~~~~~~l~~~L~~~ 70 (191)
T PF14417_consen 32 LLEVLVPFIREGLARGERCLYVAPDPRRVEELRDELRKA 70 (191)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHhc
Confidence 555666666666677889988887455566677777544
No 493
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=20.53 E-value=3.9e+02 Score=20.28 Aligned_cols=76 Identities=7% Similarity=0.000 Sum_probs=36.9
Q ss_pred CchHHHHHHHHHHHh-cCC-CeEEEEeccHHH----HHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEE
Q psy13224 37 CGKLQSLDVILRKLK-AGG-HRVLIFTQMTRM----LDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFI 110 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~-~~~-~k~lif~~~~~~----~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll 110 (160)
.-.+..+.++++.+. +.. -++++++-++.. .+.+.+.+.+.|+. .++--.++.++...........+-..+.+
T Consensus 68 G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvd-GlIipDLP~ee~~~~~~~~~~~gl~~I~l 146 (259)
T PF00290_consen 68 GFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVD-GLIIPDLPPEESEELREAAKKHGLDLIPL 146 (259)
T ss_dssp T--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEE-EEEETTSBGGGHHHHHHHHHHTT-EEEEE
T ss_pred CCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCC-EEEEcCCChHHHHHHHHHHHHcCCeEEEE
Confidence 346777888888876 433 366666665443 33344444444554 23334445555544444443223344444
Q ss_pred Eec
Q psy13224 111 LST 113 (160)
Q Consensus 111 ~~~ 113 (160)
+++
T Consensus 147 v~p 149 (259)
T PF00290_consen 147 VAP 149 (259)
T ss_dssp EET
T ss_pred ECC
Confidence 444
No 494
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=20.45 E-value=2.9e+02 Score=25.30 Aligned_cols=80 Identities=19% Similarity=0.101 Sum_probs=52.0
Q ss_pred cCchHHHHHHHHHHHhcCC--CeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEec
Q psy13224 36 DCGKLQSLDVILRKLKAGG--HRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILST 113 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~--~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~ 113 (160)
+-+|.-.-.-++..+...| +++||.|...-...|..++.++-++.+.++++......+....+.| ....++|+|.
T Consensus 179 GLGKTIeAglil~~l~~~g~~~rvLIVvP~sL~~QW~~El~~kF~l~~~i~~~~~~~~~~~~~~~pf---~~~~~vI~S~ 255 (956)
T PRK04914 179 GLGKTIEAGMIIHQQLLTGRAERVLILVPETLQHQWLVEMLRRFNLRFSLFDEERYAEAQHDADNPF---ETEQLVICSL 255 (956)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCcEEEEcCHHHHHHHHHHHHHHhCCCeEEEcCcchhhhcccccCcc---ccCcEEEEEH
Confidence 4578877777776654444 5999999987778888888877788887787654322111111222 2345688888
Q ss_pred ccccc
Q psy13224 114 RSGGV 118 (160)
Q Consensus 114 ~~~~~ 118 (160)
+....
T Consensus 256 ~~l~~ 260 (956)
T PRK04914 256 DFLRR 260 (956)
T ss_pred HHhhh
Confidence 76553
No 495
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=20.38 E-value=3e+02 Score=18.92 Aligned_cols=33 Identities=12% Similarity=0.024 Sum_probs=24.5
Q ss_pred CeEEEEECCCCHHHHHHHHHHhccCCCceEEEE
Q psy13224 79 HIYLRLDGTTKVDQRQVLMERFNMDARIFCFIL 111 (160)
Q Consensus 79 ~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~ 111 (160)
.+...++|..+.+....+.+-++.-++.+.++.
T Consensus 58 aDvllVtG~vt~~~~~~l~~~~e~~p~pk~VIA 90 (145)
T TIGR01957 58 ADVMIVAGTVTKKMAPALRRLYDQMPEPKWVIS 90 (145)
T ss_pred ceEEEEecCCcHHHHHHHHHHHHhccCCceEEE
Confidence 568899999999988888887875445454443
No 496
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=20.29 E-value=4.5e+02 Score=20.89 Aligned_cols=65 Identities=22% Similarity=0.236 Sum_probs=38.8
Q ss_pred cccCchHHHHHHHHHHHhcCCCeEEEEeccHH-----HHHHHHHHHHhcCCeEEEEECCCC---HHHHHHHHHHhc
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGHRVLIFTQMTR-----MLDVLEAFLNFHGHIYLRLDGTTK---VDQRQVLMERFN 101 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~-----~~~~l~~~l~~~~~~~~~~~g~~~---~~~r~~~~~~f~ 101 (160)
....+....+-++++.+ +++++|.+.... ..+.+.+.|+..|+.+..+++-.+ .+.-.+..+.++
T Consensus 11 ~~G~g~~~~l~~~~~~~---~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~ 83 (382)
T cd08187 11 IFGKGTESELGKELKKY---GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCK 83 (382)
T ss_pred EECCCHHHHHHHHHHHh---CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHH
Confidence 33456677777777653 467877765311 246778888888888777766332 233344444444
No 497
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=20.26 E-value=4.1e+02 Score=20.49 Aligned_cols=62 Identities=16% Similarity=0.074 Sum_probs=44.2
Q ss_pred CeEEEEeccHHHHHHHHHHHHhcCC--eEEEEECCCCH--HHHHHHHHHhccCCCceEEEEecccc
Q psy13224 55 HRVLIFTQMTRMLDVLEAFLNFHGH--IYLRLDGTTKV--DQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 55 ~k~lif~~~~~~~~~l~~~l~~~~~--~~~~~~g~~~~--~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
..+=+++++-.....+..+....|+ ..++-.|.... -+-...++.|.+++..+++++.....
T Consensus 146 G~valiSQSGal~~~~~~~~~~~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~Dp~T~~I~lylE~~ 211 (291)
T PRK05678 146 GRVGVVSRSGTLTYEAVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLEAFEEDPETEAIVMIGEIG 211 (291)
T ss_pred CCEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecC
Confidence 3677888888888888888877755 55556665522 45667888888888888888776644
No 498
>PF02589 DUF162: Uncharacterised ACR, YkgG family COG1556; InterPro: IPR003741 This entry represents a domain found in lactate utilization proteins B (LutB) and C (LutC), as well as several uncharacterised proteins. Lactate utilization proteins B and C are involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source. LutB probably has a role as an electron transporter during oxidation of L-lactate.; PDB: 2G40_A.
Probab=20.22 E-value=3.1e+02 Score=19.08 Aligned_cols=46 Identities=11% Similarity=-0.031 Sum_probs=30.8
Q ss_pred CCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHh
Q psy13224 104 ARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHR 149 (160)
Q Consensus 104 ~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R 149 (160)
+...+++.+...-.+.+.+-.-.+|+......=-..+.+++.|+..
T Consensus 98 etGtlvl~~~~~~~r~~s~lP~~hi~vv~~~kIv~~l~ea~~~~~~ 143 (189)
T PF02589_consen 98 ETGTLVLSSGPGNRRAVSLLPPVHIVVVGASKIVPNLEEALERLRN 143 (189)
T ss_dssp TTTEEEE---TTT-GGGGTSSSEEEEEEEGGGEESSHHHHHHHHHH
T ss_pred hCCeEEEeCCCCChhhhhhCCCeEEEEEcHHHcCCCHHHHHHHHHh
Confidence 3455566665555578888888888888876666677788888877
No 499
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=20.14 E-value=1.9e+02 Score=23.17 Aligned_cols=39 Identities=13% Similarity=0.125 Sum_probs=30.2
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCCH
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTKV 90 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~ 90 (160)
..++.+++||+.-.........|.+.|++ +..+.|+...
T Consensus 341 ~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~ 380 (392)
T PRK07878 341 PQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVA 380 (392)
T ss_pred CCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHH
Confidence 34668999998877777778888888885 6678887753
No 500
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=20.01 E-value=1e+02 Score=21.99 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=23.3
Q ss_pred ccccCCEEEEeCCCCCcChh---hHHHHHHHhcC
Q psy13224 121 NLTGADTVVFYDSDWNPTMD---AQAQDRCHRIG 151 (160)
Q Consensus 121 dl~~~~~vi~~~~~~~~~~~---~Q~~gR~~R~g 151 (160)
.+..++.||+.-|-|+...+ .+-+.|+.+.|
T Consensus 58 ~l~~aD~iV~~fPl~w~~~Pa~LK~wiD~V~~~g 91 (184)
T PRK04930 58 LLREHDVIVFQHPLYTYSCPALLKEWLDRVLSRG 91 (184)
T ss_pred HHHhCCEEEEEcCccccCCcHHHHHHHHHHHhcC
Confidence 46789999999999986554 46677777654
Done!