Query psy13224
Match_columns 160
No_of_seqs 109 out of 1353
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 23:19:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13224.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13224hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z5z_A Helicase of the SNF2/RA 100.0 2.2E-32 7.4E-37 205.2 12.5 143 12-160 76-219 (271)
2 3mwy_W Chromo domain-containin 100.0 3.9E-28 1.3E-32 205.1 11.6 125 36-160 554-679 (800)
3 1z3i_X Similar to RAD54-like; 99.9 2.3E-27 7.9E-32 196.3 13.7 127 34-160 395-523 (644)
4 1z63_A Helicase of the SNF2/RA 99.9 5.2E-27 1.8E-31 188.6 13.3 127 34-160 321-448 (500)
5 1t5i_A C_terminal domain of A 99.9 2.4E-25 8.1E-30 156.5 13.5 127 29-159 8-134 (172)
6 2hjv_A ATP-dependent RNA helic 99.9 3.6E-25 1.2E-29 154.2 10.1 124 32-159 15-138 (163)
7 2jgn_A DBX, DDX3, ATP-dependen 99.9 6.3E-25 2.1E-29 156.1 8.8 129 28-159 21-149 (185)
8 1fuk_A Eukaryotic initiation f 99.9 1.5E-24 5E-29 151.3 10.4 121 35-159 12-133 (165)
9 2p6n_A ATP-dependent RNA helic 99.9 2.4E-24 8.4E-29 153.8 10.1 125 30-159 33-157 (191)
10 3eaq_A Heat resistant RNA depe 99.9 1.1E-23 3.9E-28 152.5 11.6 127 29-159 8-134 (212)
11 2rb4_A ATP-dependent RNA helic 99.9 2.7E-23 9.2E-28 146.2 9.0 118 38-159 20-143 (175)
12 2yjt_D ATP-dependent RNA helic 99.8 7.5E-25 2.6E-29 153.5 0.0 119 37-159 15-133 (170)
13 3i32_A Heat resistant RNA depe 99.9 3.2E-22 1.1E-26 151.8 10.6 125 31-159 7-131 (300)
14 1wp9_A ATP-dependent RNA helic 99.9 3.1E-22 1.1E-26 158.1 10.5 116 35-152 340-465 (494)
15 3dmq_A RNA polymerase-associat 99.9 3E-22 1E-26 172.0 10.8 125 34-160 485-610 (968)
16 2db3_A ATP-dependent RNA helic 99.8 4.6E-21 1.6E-25 151.9 9.8 119 36-159 285-403 (434)
17 3hgt_A HDA1 complex subunit 3; 99.8 6.2E-21 2.1E-25 144.8 9.2 143 11-160 76-232 (328)
18 1xti_A Probable ATP-dependent 99.8 1.5E-20 5.2E-25 145.9 11.3 120 36-159 234-353 (391)
19 4a2p_A RIG-I, retinoic acid in 99.8 1.4E-20 4.7E-25 152.2 8.8 113 36-150 370-496 (556)
20 2j0s_A ATP-dependent RNA helic 99.8 5.2E-20 1.8E-24 144.0 11.5 118 38-159 262-379 (410)
21 1hv8_A Putative ATP-dependent 99.8 4.2E-20 1.5E-24 141.9 10.2 119 36-159 223-341 (367)
22 2i4i_A ATP-dependent RNA helic 99.8 4.8E-20 1.6E-24 144.3 10.5 121 36-159 259-379 (417)
23 1s2m_A Putative ATP-dependent 99.8 1E-19 3.5E-24 141.8 11.9 120 36-159 242-361 (400)
24 3pey_A ATP-dependent RNA helic 99.8 1.6E-19 5.6E-24 139.9 10.2 118 38-159 229-352 (395)
25 3eiq_A Eukaryotic initiation f 99.8 1.3E-19 4.3E-24 141.7 9.3 119 37-159 265-383 (414)
26 3tbk_A RIG-I helicase domain; 99.8 5.8E-20 2E-24 148.2 7.5 113 36-150 369-495 (555)
27 1oyw_A RECQ helicase, ATP-depe 99.8 6.8E-19 2.3E-23 142.6 13.1 119 37-159 221-339 (523)
28 2fwr_A DNA repair protein RAD2 99.8 6.5E-20 2.2E-24 146.3 6.1 116 36-160 333-449 (472)
29 4a2q_A RIG-I, retinoic acid in 99.8 2E-19 6.9E-24 151.9 9.0 113 36-150 611-737 (797)
30 3fht_A ATP-dependent RNA helic 99.8 9.8E-19 3.3E-23 136.4 11.0 119 37-159 251-375 (412)
31 4gl2_A Interferon-induced heli 99.8 1.1E-19 3.7E-24 151.1 5.9 114 36-151 379-509 (699)
32 4a2w_A RIG-I, retinoic acid in 99.8 3.3E-19 1.1E-23 152.8 9.0 113 36-150 611-737 (936)
33 3sqw_A ATP-dependent RNA helic 99.8 1.9E-18 6.6E-23 141.2 12.7 117 41-159 273-394 (579)
34 2v1x_A ATP-dependent DNA helic 99.8 1.2E-18 4.2E-23 142.9 11.5 119 39-159 250-370 (591)
35 3i5x_A ATP-dependent RNA helic 99.8 3.2E-18 1.1E-22 139.2 12.7 106 52-159 337-445 (563)
36 2oca_A DAR protein, ATP-depend 99.8 4.6E-18 1.6E-22 136.8 13.1 119 38-159 331-452 (510)
37 2ykg_A Probable ATP-dependent 99.8 1.3E-18 4.5E-23 144.5 8.8 113 36-150 378-504 (696)
38 2z0m_A 337AA long hypothetical 99.7 1.7E-18 5.9E-23 131.6 7.5 102 52-159 218-319 (337)
39 1fuu_A Yeast initiation factor 99.7 9E-20 3.1E-24 141.5 0.0 117 39-159 246-362 (394)
40 1tf5_A Preprotein translocase 99.7 2.9E-17 9.9E-22 137.5 9.0 121 35-159 413-541 (844)
41 3h1t_A Type I site-specific re 99.7 8.1E-17 2.8E-21 131.8 9.8 107 52-159 437-555 (590)
42 3fmp_B ATP-dependent RNA helic 99.7 2.2E-18 7.5E-23 137.8 0.0 119 37-159 318-442 (479)
43 3oiy_A Reverse gyrase helicase 99.7 1.1E-16 3.6E-21 125.7 9.5 105 37-152 238-350 (414)
44 3jux_A Protein translocase sub 99.7 1.4E-16 4.7E-21 131.7 10.5 120 35-158 455-582 (822)
45 1c4o_A DNA nucleotide excision 99.7 3.6E-16 1.2E-20 129.8 11.6 113 38-152 423-540 (664)
46 2d7d_A Uvrabc system protein B 99.7 4.6E-16 1.6E-20 129.1 11.5 118 38-158 429-551 (661)
47 2fsf_A Preprotein translocase 99.6 6E-16 2E-20 129.5 9.9 121 35-159 422-579 (853)
48 3fho_A ATP-dependent RNA helic 99.6 1.7E-17 5.7E-22 133.9 0.2 119 37-159 342-466 (508)
49 1nkt_A Preprotein translocase 99.6 2.4E-15 8.3E-20 126.3 10.7 120 35-158 441-612 (922)
50 2eyq_A TRCF, transcription-rep 99.6 2.7E-15 9.3E-20 130.8 8.7 118 39-159 798-918 (1151)
51 1yks_A Genome polyprotein [con 99.6 1.6E-15 5.6E-20 120.4 4.5 101 52-159 175-295 (440)
52 2jlq_A Serine protease subunit 99.5 1.2E-14 4.2E-19 115.7 8.0 101 52-159 186-307 (451)
53 3rc3_A ATP-dependent RNA helic 99.5 3.1E-14 1.1E-18 118.2 10.5 98 55-153 321-432 (677)
54 2va8_A SSO2462, SKI2-type heli 99.5 3E-14 1E-18 119.0 10.5 109 45-155 243-398 (715)
55 2xgj_A ATP-dependent RNA helic 99.5 1.6E-14 5.5E-19 124.6 8.5 112 42-155 330-489 (1010)
56 2wv9_A Flavivirin protease NS2 99.5 1.4E-14 4.6E-19 120.4 7.4 102 51-159 407-529 (673)
57 2z83_A Helicase/nucleoside tri 99.5 5.5E-15 1.9E-19 118.0 4.7 100 53-159 189-309 (459)
58 1gm5_A RECG; helicase, replica 99.5 3.1E-15 1.1E-19 125.8 2.4 121 37-159 561-693 (780)
59 2p6r_A Afuhel308 helicase; pro 99.5 3.3E-14 1.1E-18 118.6 7.8 103 51-155 239-378 (702)
60 3l9o_A ATP-dependent RNA helic 99.5 2.2E-14 7.6E-19 124.6 6.9 117 40-158 426-590 (1108)
61 2whx_A Serine protease/ntpase/ 99.5 1.9E-14 6.5E-19 118.6 6.0 100 52-158 353-473 (618)
62 2v6i_A RNA helicase; membrane, 99.5 4.9E-14 1.7E-18 111.7 7.6 101 52-159 169-287 (431)
63 2zj8_A DNA helicase, putative 99.5 6.9E-14 2.4E-18 117.0 8.2 112 38-155 225-377 (720)
64 2xau_A PRE-mRNA-splicing facto 99.5 8.7E-14 3E-18 117.2 8.2 104 53-157 302-437 (773)
65 4ddu_A Reverse gyrase; topoiso 99.4 2E-13 6.9E-18 118.6 7.8 88 37-135 295-388 (1104)
66 4a4z_A Antiviral helicase SKI2 99.4 4.4E-13 1.5E-17 115.6 9.6 115 38-157 322-484 (997)
67 3o8b_A HCV NS3 protease/helica 99.4 4.5E-13 1.5E-17 110.8 6.9 92 53-155 395-507 (666)
68 1gku_B Reverse gyrase, TOP-RG; 99.4 3.7E-13 1.3E-17 116.7 5.0 88 37-134 261-352 (1054)
69 2w00_A HSDR, R.ECOR124I; ATP-b 98.9 1.2E-08 4E-13 88.4 11.3 97 54-153 537-695 (1038)
70 4f92_B U5 small nuclear ribonu 98.8 8.6E-09 2.9E-13 93.1 8.0 101 52-154 1153-1297(1724)
71 4f92_B U5 small nuclear ribonu 98.8 7E-09 2.4E-13 93.7 6.7 98 54-153 317-461 (1724)
72 2ipc_A Preprotein translocase 98.1 1.1E-05 3.8E-10 68.6 9.6 120 36-159 425-694 (997)
73 2vl7_A XPD; helicase, unknown 98.1 1.4E-05 4.7E-10 64.9 9.6 109 41-156 370-514 (540)
74 4a15_A XPD helicase, ATP-depen 97.0 0.0036 1.2E-07 51.7 8.7 112 41-158 434-579 (620)
75 1gm5_A RECG; helicase, replica 96.1 0.045 1.5E-06 46.3 10.1 98 34-132 397-498 (780)
76 3oiy_A Reverse gyrase helicase 95.9 0.081 2.8E-06 40.8 10.0 99 33-132 43-147 (414)
77 4ddu_A Reverse gyrase; topoiso 94.9 0.2 6.9E-06 44.0 10.4 99 33-132 100-204 (1104)
78 2l82_A Designed protein OR32; 94.2 0.49 1.7E-05 30.0 8.1 46 39-84 11-58 (162)
79 2eyq_A TRCF, transcription-rep 93.8 0.54 1.8E-05 41.6 10.6 99 33-132 631-733 (1151)
80 1wp9_A ATP-dependent RNA helic 92.4 1.5 5E-05 33.7 10.2 94 33-132 30-133 (494)
81 3ber_A Probable ATP-dependent 91.6 2.6 9E-05 30.0 10.3 95 33-132 87-194 (249)
82 3crv_A XPD/RAD3 related DNA he 91.2 3.9 0.00013 32.9 11.8 89 40-136 378-474 (551)
83 3fe2_A Probable ATP-dependent 91.2 2.4 8.1E-05 30.0 9.5 95 33-132 73-184 (242)
84 3zyw_A Glutaredoxin-3; metal b 91.0 1.9 6.4E-05 27.0 8.3 68 44-113 6-79 (111)
85 2oxc_A Probable ATP-dependent 90.9 3 0.0001 29.2 9.8 94 33-132 68-174 (230)
86 1gku_B Reverse gyrase, TOP-RG; 90.9 1.5 5.2E-05 38.3 9.6 97 33-132 78-183 (1054)
87 3iuy_A Probable ATP-dependent 90.8 1.9 6.4E-05 30.1 8.6 95 33-132 64-175 (228)
88 1t6n_A Probable ATP-dependent 89.8 3.6 0.00012 28.4 10.8 96 33-132 58-166 (220)
89 1xti_A Probable ATP-dependent 89.2 5.6 0.00019 29.8 11.0 96 33-132 52-160 (391)
90 2pl3_A Probable ATP-dependent 89.2 4.2 0.00014 28.4 9.5 94 33-132 69-179 (236)
91 3tbk_A RIG-I helicase domain; 89.1 0.82 2.8E-05 36.2 6.1 95 33-132 26-135 (555)
92 3gx8_A Monothiol glutaredoxin- 88.7 3.2 0.00011 26.3 8.8 69 44-114 6-83 (121)
93 4a2q_A RIG-I, retinoic acid in 88.6 1.3 4.3E-05 37.5 7.2 95 33-132 270-379 (797)
94 2wem_A Glutaredoxin-related pr 88.6 2.7 9.3E-05 26.6 7.3 59 55-114 20-85 (118)
95 3g5j_A Putative ATP/GTP bindin 88.5 1.1 3.7E-05 28.5 5.4 50 41-91 76-127 (134)
96 4a2p_A RIG-I, retinoic acid in 87.8 1 3.6E-05 35.6 5.9 95 33-132 29-138 (556)
97 2gxq_A Heat resistant RNA depe 87.7 3.9 0.00013 27.8 8.2 95 33-132 45-152 (207)
98 3ipz_A Monothiol glutaredoxin- 87.4 3.6 0.00012 25.4 9.2 68 44-113 8-81 (109)
99 3ly5_A ATP-dependent RNA helic 87.4 4.8 0.00016 28.9 8.9 95 33-132 98-209 (262)
100 2db3_A ATP-dependent RNA helic 87.0 7.2 0.00025 30.2 10.2 95 33-132 100-211 (434)
101 1oyw_A RECQ helicase, ATP-depe 86.5 3.1 0.00011 33.3 8.0 80 33-116 47-126 (523)
102 1qde_A EIF4A, translation init 85.1 4.1 0.00014 28.1 7.3 94 33-132 58-163 (224)
103 2yan_A Glutaredoxin-3; oxidore 84.9 4.8 0.00016 24.5 8.8 65 45-111 8-78 (105)
104 2lnd_A De novo designed protei 84.7 4.5 0.00015 24.0 8.1 72 26-100 25-98 (112)
105 1s2m_A Putative ATP-dependent 83.8 12 0.0004 28.1 10.4 95 33-132 65-171 (400)
106 2wci_A Glutaredoxin-4; redox-a 83.5 7.1 0.00024 25.3 8.0 57 55-112 35-97 (135)
107 3gk5_A Uncharacterized rhodane 83.2 1.5 5.3E-05 27.1 3.9 47 43-90 45-91 (108)
108 1q0u_A Bstdead; DEAD protein, 83.0 2.8 9.6E-05 29.0 5.7 95 33-132 48-158 (219)
109 1wrb_A DJVLGB; RNA helicase, D 82.7 10 0.00035 26.7 10.5 95 33-132 67-182 (253)
110 2i4i_A ATP-dependent RNA helic 82.5 14 0.00047 27.9 10.6 95 33-132 59-183 (417)
111 2v1x_A ATP-dependent DNA helic 81.8 8.3 0.00028 31.4 8.7 81 33-116 66-147 (591)
112 4b3f_X DNA-binding protein smu 81.4 4.1 0.00014 33.5 6.8 51 35-85 214-264 (646)
113 2oca_A DAR protein, ATP-depend 79.9 6.2 0.00021 31.0 7.2 92 33-132 135-233 (510)
114 1vec_A ATP-dependent RNA helic 79.6 12 0.0004 25.3 10.3 95 33-132 47-154 (206)
115 2jtq_A Phage shock protein E; 79.5 7 0.00024 22.6 5.9 46 43-89 29-76 (85)
116 4a2w_A RIG-I, retinoic acid in 78.7 2.7 9.2E-05 36.3 5.0 95 33-132 270-379 (936)
117 3foj_A Uncharacterized protein 78.7 3 0.0001 25.2 4.0 38 52-89 54-91 (100)
118 4gl2_A Interferon-induced heli 78.0 1.1 3.9E-05 36.8 2.5 95 33-132 29-144 (699)
119 3hix_A ALR3790 protein; rhodan 78.0 4.4 0.00015 24.7 4.8 40 51-90 49-89 (106)
120 1fuu_A Yeast initiation factor 77.8 12 0.00043 27.8 8.1 94 33-132 65-170 (394)
121 1rif_A DAR protein, DNA helica 77.2 9 0.00031 27.6 7.0 92 33-132 135-233 (282)
122 1hv8_A Putative ATP-dependent 77.2 19 0.00065 26.4 10.5 94 33-132 51-155 (367)
123 3eme_A Rhodanese-like domain p 76.6 2.9 9.9E-05 25.4 3.6 38 52-89 54-91 (103)
124 1gmx_A GLPE protein; transfera 76.5 4.8 0.00016 24.6 4.6 49 42-91 47-96 (108)
125 2ykg_A Probable ATP-dependent 76.3 7.7 0.00026 31.8 7.0 95 33-132 35-144 (696)
126 2lqo_A Putative glutaredoxin R 76.1 10 0.00035 22.7 6.8 46 55-100 4-50 (92)
127 3sxu_A DNA polymerase III subu 75.5 5.1 0.00017 26.6 4.7 38 38-75 23-60 (150)
128 3b6e_A Interferon-induced heli 75.4 5 0.00017 27.3 4.9 95 33-132 55-170 (216)
129 2j0s_A ATP-dependent RNA helic 74.6 25 0.00085 26.4 9.3 95 33-132 81-187 (410)
130 3iwh_A Rhodanese-like domain p 74.4 3.6 0.00012 25.3 3.6 38 52-89 54-91 (103)
131 3dkp_A Probable ATP-dependent 73.5 6.9 0.00024 27.4 5.4 94 33-132 73-183 (245)
132 1wv9_A Rhodanese homolog TT165 72.8 3.9 0.00013 24.3 3.4 35 55-89 54-88 (94)
133 2j48_A Two-component sensor ki 71.5 13 0.00044 21.8 5.9 88 53-148 24-116 (119)
134 2wul_A Glutaredoxin related pr 71.3 17 0.00057 23.0 8.4 68 41-114 11-85 (118)
135 3nhv_A BH2092 protein; alpha-b 71.0 6.5 0.00022 25.6 4.4 38 53-90 71-110 (144)
136 3fmo_B ATP-dependent RNA helic 69.6 22 0.00075 26.0 7.5 91 34-132 139-243 (300)
137 2fwr_A DNA repair protein RAD2 69.2 14 0.00048 28.6 6.7 54 33-89 115-169 (472)
138 2rkb_A Serine dehydratase-like 68.8 32 0.0011 25.3 8.4 67 34-100 33-99 (318)
139 2csu_A 457AA long hypothetical 68.7 20 0.00068 28.2 7.4 85 55-160 150-236 (457)
140 2kpo_A Rossmann 2X2 fold prote 68.3 16 0.00054 21.6 8.9 62 40-102 35-98 (110)
141 3bor_A Human initiation factor 68.2 27 0.00093 24.2 8.2 96 33-132 74-181 (237)
142 2fsx_A RV0390, COG0607: rhodan 68.0 8.6 0.0003 24.9 4.5 38 52-89 78-116 (148)
143 2hhg_A Hypothetical protein RP 67.6 6.4 0.00022 25.1 3.8 39 52-90 84-123 (139)
144 3ilm_A ALR3790 protein; rhodan 67.6 7.9 0.00027 25.1 4.2 38 52-89 54-92 (141)
145 2gk6_A Regulator of nonsense t 67.3 16 0.00056 29.8 6.9 51 36-86 205-256 (624)
146 2yv2_A Succinyl-COA synthetase 67.3 35 0.0012 25.1 9.3 62 56-117 153-218 (297)
147 1oi7_A Succinyl-COA synthetase 66.9 35 0.0012 25.0 8.6 62 56-117 146-211 (288)
148 3flh_A Uncharacterized protein 66.5 4.3 0.00015 25.6 2.7 39 52-90 69-109 (124)
149 3sqw_A ATP-dependent RNA helic 66.1 49 0.0017 26.5 9.5 96 33-132 67-183 (579)
150 2k0z_A Uncharacterized protein 65.9 10 0.00034 23.3 4.3 38 52-89 54-91 (110)
151 1tq1_A AT5G66040, senescence-a 65.3 7.5 0.00026 24.6 3.7 39 52-90 80-119 (129)
152 2z0m_A 337AA long hypothetical 64.7 37 0.0013 24.5 10.0 91 33-132 38-137 (337)
153 3dwg_A Cysteine synthase B; su 63.6 43 0.0015 24.8 10.0 76 33-112 47-126 (325)
154 3i42_A Response regulator rece 62.7 23 0.00077 21.4 6.8 104 41-153 17-125 (127)
155 1p5j_A L-serine dehydratase; l 62.7 48 0.0016 25.2 8.5 68 33-100 71-138 (372)
156 4h27_A L-serine dehydratase/L- 62.1 49 0.0017 25.0 9.0 68 33-100 71-138 (364)
157 3dmq_A RNA polymerase-associat 62.0 6.2 0.00021 34.2 3.6 82 34-118 178-261 (968)
158 1qxn_A SUD, sulfide dehydrogen 61.8 7.7 0.00026 24.9 3.3 39 52-90 80-119 (137)
159 2yv1_A Succinyl-COA ligase [AD 61.3 46 0.0016 24.4 8.6 62 56-117 152-217 (294)
160 1urh_A 3-mercaptopyruvate sulf 60.9 11 0.00039 27.1 4.5 49 40-88 71-122 (280)
161 2d1f_A Threonine synthase; ami 60.4 52 0.0018 24.8 8.6 67 34-100 64-131 (360)
162 4a4z_A Antiviral helicase SKI2 60.3 37 0.0013 29.6 8.1 57 33-89 61-119 (997)
163 1e0c_A Rhodanese, sulfurtransf 60.1 15 0.00052 26.2 5.0 49 40-88 66-117 (271)
164 2wjy_A Regulator of nonsense t 60.1 25 0.00086 29.8 6.9 51 36-86 381-432 (800)
165 3hzu_A Thiosulfate sulfurtrans 59.8 17 0.0006 26.9 5.4 47 41-87 97-146 (318)
166 3aey_A Threonine synthase; PLP 59.5 53 0.0018 24.6 9.6 76 33-112 55-131 (351)
167 3nhm_A Response regulator; pro 58.8 28 0.00094 21.1 9.1 98 48-151 21-123 (133)
168 3i5x_A ATP-dependent RNA helic 58.7 66 0.0022 25.4 9.5 96 33-132 118-234 (563)
169 3dmn_A Putative DNA helicase; 58.6 37 0.0013 22.5 9.3 77 42-135 49-125 (174)
170 2fz4_A DNA repair protein RAD2 58.2 33 0.0011 24.0 6.4 53 34-89 116-169 (237)
171 2xzl_A ATP-dependent helicase 57.9 22 0.00075 30.2 6.1 51 36-86 385-436 (802)
172 3d1p_A Putative thiosulfate su 57.1 10 0.00034 24.2 3.2 37 53-89 90-127 (139)
173 2zsj_A Threonine synthase; PLP 56.7 59 0.002 24.3 9.1 68 33-100 57-125 (352)
174 1uar_A Rhodanese; sulfurtransf 56.5 17 0.00058 26.2 4.7 47 42-88 66-115 (285)
175 1tf5_A Preprotein translocase 56.4 96 0.0033 26.6 10.9 64 33-96 103-170 (844)
176 2xgj_A ATP-dependent RNA helic 55.4 49 0.0017 28.9 8.0 57 33-89 108-164 (1010)
177 3l9o_A ATP-dependent RNA helic 54.9 50 0.0017 29.2 8.1 57 33-89 206-262 (1108)
178 2yxb_A Coenzyme B12-dependent 54.9 40 0.0014 22.3 6.1 47 54-100 18-68 (161)
179 2v03_A Cysteine synthase B; py 54.8 59 0.002 23.7 9.7 75 34-112 36-114 (303)
180 1j0a_A 1-aminocyclopropane-1-c 54.8 61 0.0021 23.9 9.3 74 35-112 50-126 (325)
181 3lte_A Response regulator; str 54.4 33 0.0011 20.7 7.5 96 53-152 29-127 (132)
182 1uar_A Rhodanese; sulfurtransf 54.3 24 0.00082 25.4 5.3 49 41-89 219-270 (285)
183 3tg1_B Dual specificity protei 54.3 10 0.00036 24.9 3.0 36 54-89 93-137 (158)
184 3rhb_A ATGRXC5, glutaredoxin-C 53.7 34 0.0012 20.6 7.4 67 45-112 10-80 (113)
185 1u6t_A SH3 domain-binding glut 53.6 32 0.0011 21.8 5.1 34 67-100 19-52 (121)
186 2p6r_A Afuhel308 helicase; pro 53.4 71 0.0024 26.2 8.5 92 33-132 47-146 (702)
187 3aay_A Putative thiosulfate su 53.2 34 0.0012 24.4 5.9 48 42-89 213-263 (277)
188 2q3b_A Cysteine synthase A; py 53.2 64 0.0022 23.6 9.7 75 34-112 42-120 (313)
189 3h1t_A Type I site-specific re 52.9 39 0.0013 27.1 6.7 72 33-117 205-286 (590)
190 1o58_A O-acetylserine sulfhydr 52.7 65 0.0022 23.5 7.4 67 34-100 42-110 (303)
191 1vee_A Proline-rich protein fa 52.7 18 0.0006 23.0 3.9 37 53-89 73-110 (134)
192 3aay_A Putative thiosulfate su 52.5 32 0.0011 24.6 5.6 47 41-87 63-112 (277)
193 1ve1_A O-acetylserine sulfhydr 52.1 66 0.0022 23.4 9.4 75 34-112 35-115 (304)
194 2nu8_A Succinyl-COA ligase [AD 52.0 66 0.0023 23.4 8.5 62 56-117 146-211 (288)
195 3mwd_B ATP-citrate synthase; A 52.0 74 0.0025 24.0 9.5 62 55-116 169-234 (334)
196 1y7l_A O-acetylserine sulfhydr 50.9 70 0.0024 23.4 9.6 76 33-112 36-115 (316)
197 2fsf_A Preprotein translocase 50.7 1.2E+02 0.0041 26.1 10.3 63 33-95 94-160 (853)
198 3tbh_A O-acetyl serine sulfhyd 50.2 76 0.0026 23.6 9.1 76 33-112 45-125 (334)
199 2fp4_A Succinyl-COA ligase [GD 50.1 74 0.0025 23.5 7.6 63 55-117 153-219 (305)
200 2egu_A Cysteine synthase; O-ac 50.0 72 0.0025 23.2 10.2 75 34-112 40-118 (308)
201 2wlr_A Putative thiosulfate su 49.4 41 0.0014 25.9 6.1 49 41-89 189-239 (423)
202 3nvb_A Uncharacterized protein 49.1 70 0.0024 24.7 7.2 109 40-151 258-374 (387)
203 2j6p_A SB(V)-AS(V) reductase; 49.0 28 0.00095 22.6 4.5 24 68-91 87-113 (152)
204 2ipc_A Preprotein translocase 48.8 1.2E+02 0.004 26.6 9.0 64 33-96 99-166 (997)
205 1urh_A 3-mercaptopyruvate sulf 48.7 27 0.00093 25.0 4.8 50 42-91 217-268 (280)
206 2eg4_A Probable thiosulfate su 47.9 38 0.0013 23.5 5.3 45 41-87 49-95 (230)
207 3h8q_A Thioredoxin reductase 3 46.5 48 0.0016 20.2 8.3 59 55-113 17-78 (114)
208 1wik_A Thioredoxin-like protei 45.9 47 0.0016 20.0 8.0 58 54-112 14-77 (109)
209 3eiq_A Eukaryotic initiation f 45.5 91 0.0031 23.1 9.9 96 33-132 84-191 (414)
210 3pey_A ATP-dependent RNA helic 44.5 91 0.0031 22.9 9.2 91 33-132 51-153 (395)
211 2fp3_A Caspase NC; apoptosis, 43.8 98 0.0033 23.0 7.3 47 55-102 62-120 (316)
212 1t1v_A SH3BGRL3, SH3 domain-bi 43.6 47 0.0016 19.3 6.9 45 56-100 3-54 (93)
213 1rhs_A Sulfur-substituted rhod 42.6 31 0.0011 25.0 4.3 51 41-91 226-278 (296)
214 1e0c_A Rhodanese, sulfurtransf 42.4 29 0.00098 24.7 4.0 48 42-89 210-259 (271)
215 2ct6_A SH3 domain-binding glut 42.4 56 0.0019 19.8 6.6 45 56-100 9-60 (111)
216 2pqm_A Cysteine synthase; OASS 42.0 1.1E+02 0.0036 22.9 8.8 75 34-112 53-131 (343)
217 1v5x_A PRA isomerase, phosphor 41.8 80 0.0027 21.8 6.1 50 41-92 40-89 (203)
218 1z7w_A Cysteine synthase; tran 40.2 1.1E+02 0.0037 22.5 9.9 75 34-112 41-120 (322)
219 3l6b_A Serine racemase; pyrido 40.0 1.1E+02 0.0039 22.7 8.3 68 33-100 50-121 (346)
220 1tzj_A ACC deaminase, 1-aminoc 40.0 73 0.0025 23.5 6.1 66 35-100 47-122 (338)
221 3qmx_A Glutaredoxin A, glutare 39.6 59 0.002 19.3 7.6 59 54-112 15-74 (99)
222 2amj_A Modulator of drug activ 39.4 67 0.0023 21.9 5.4 31 121-151 67-100 (204)
223 3fht_A ATP-dependent RNA helic 39.3 1.1E+02 0.0039 22.5 7.6 92 33-132 71-176 (412)
224 3e05_A Precorrin-6Y C5,15-meth 39.1 28 0.00097 23.3 3.4 42 40-81 121-162 (204)
225 3fmp_B ATP-dependent RNA helic 38.9 1.3E+02 0.0045 23.1 7.9 91 34-132 139-243 (479)
226 1nsj_A PRAI, phosphoribosyl an 38.5 85 0.0029 21.7 5.8 50 41-92 41-90 (205)
227 2eg4_A Probable thiosulfate su 37.7 34 0.0012 23.7 3.7 39 52-90 182-220 (230)
228 3olh_A MST, 3-mercaptopyruvate 37.5 23 0.00078 26.0 2.8 50 41-90 240-291 (302)
229 4f67_A UPF0176 protein LPG2838 37.4 28 0.00097 25.3 3.3 39 52-90 179-218 (265)
230 1f2d_A 1-aminocyclopropane-1-c 37.3 77 0.0026 23.5 5.8 66 35-100 47-125 (341)
231 1nkt_A Preprotein translocase 37.1 1.6E+02 0.0055 25.6 8.1 64 33-96 131-198 (922)
232 3h11_B Caspase-8; cell death, 36.2 1.2E+02 0.0041 21.9 7.3 37 65-102 49-85 (271)
233 2v6i_A RNA helicase; membrane, 36.2 40 0.0014 26.0 4.1 53 33-87 9-62 (431)
234 1ego_A Glutaredoxin; electron 34.4 39 0.0013 18.8 3.1 45 56-100 2-52 (85)
235 2khp_A Glutaredoxin; thioredox 34.2 66 0.0023 18.2 7.9 46 56-101 7-53 (92)
236 2hze_A Glutaredoxin-1; thiored 34.1 78 0.0027 19.1 7.1 47 55-101 19-72 (114)
237 3tov_A Glycosyl transferase fa 33.8 1.3E+02 0.0045 22.3 6.6 12 123-134 279-290 (349)
238 2cq9_A GLRX2 protein, glutared 33.6 87 0.003 19.5 8.0 46 56-101 28-77 (130)
239 3hcw_A Maltose operon transcri 33.2 1.2E+02 0.0043 21.3 6.3 91 42-132 118-228 (295)
240 2gkg_A Response regulator homo 33.1 75 0.0026 18.6 7.5 101 41-150 19-125 (127)
241 3pc3_A CG1753, isoform A; CBS, 33.0 1.8E+02 0.0062 23.0 9.0 76 33-112 87-166 (527)
242 3gl3_A Putative thiol:disulfid 32.9 88 0.003 19.3 8.6 29 72-100 55-83 (152)
243 1z3i_X Similar to RAD54-like; 32.8 2E+02 0.0069 23.4 9.0 84 34-118 87-183 (644)
244 2obb_A Hypothetical protein; s 32.5 69 0.0024 20.8 4.3 45 43-87 29-74 (142)
245 4fn4_A Short chain dehydrogena 32.3 1.4E+02 0.0047 21.3 7.9 47 46-92 23-69 (254)
246 3i2v_A Adenylyltransferase and 32.1 28 0.00097 21.4 2.3 35 56-90 74-115 (127)
247 2gn0_A Threonine dehydratase c 31.9 90 0.0031 23.2 5.4 67 33-100 65-133 (342)
248 3h11_A CAsp8 and FADD-like apo 31.5 69 0.0023 23.3 4.5 47 55-102 44-90 (272)
249 3rpe_A MDAB, modulator of drug 31.0 77 0.0026 22.2 4.6 31 121-151 80-113 (218)
250 3klo_A Transcriptional regulat 30.8 1.2E+02 0.0042 20.3 7.0 84 68-151 44-130 (225)
251 1jq5_A Glycerol dehydrogenase; 30.7 1.5E+02 0.0052 22.2 6.5 33 66-98 74-106 (370)
252 3ocu_A Lipoprotein E; hydrolas 30.5 1.1E+02 0.0039 22.0 5.5 40 42-81 105-146 (262)
253 2ouc_A Dual specificity protei 30.2 27 0.00093 21.8 2.0 36 54-89 83-127 (142)
254 1fov_A Glutaredoxin 3, GRX3; a 30.1 72 0.0025 17.4 7.2 45 56-100 2-47 (82)
255 3q87_B N6 adenine specific DNA 30.1 1.1E+02 0.0039 19.7 6.0 45 39-85 103-147 (170)
256 2f9s_A Thiol-disulfide oxidore 29.7 1E+02 0.0035 19.1 8.7 55 77-133 58-112 (151)
257 3dmy_A Protein FDRA; predicted 29.3 2.1E+02 0.0073 22.7 7.3 59 56-114 114-180 (480)
258 1xx6_A Thymidine kinase; NESG, 29.1 66 0.0022 21.9 3.9 30 36-65 18-47 (191)
259 4d9b_A D-cysteine desulfhydras 29.1 1.8E+02 0.006 21.6 7.9 66 35-100 61-136 (342)
260 2zj8_A DNA helicase, putative 28.8 67 0.0023 26.5 4.5 60 33-92 46-109 (720)
261 2l69_A Rossmann 2X3 fold prote 28.5 1E+02 0.0035 18.7 8.2 29 57-85 5-33 (134)
262 3dm5_A SRP54, signal recogniti 28.5 2.1E+02 0.0073 22.4 8.4 26 36-61 110-135 (443)
263 3ecs_A Translation initiation 28.3 1.9E+02 0.0063 21.6 8.4 77 51-131 119-196 (315)
264 2j9r_A Thymidine kinase; TK1, 28.3 69 0.0024 22.5 3.9 30 36-65 38-67 (214)
265 1kte_A Thioltransferase; redox 28.2 92 0.0032 18.1 8.8 54 47-101 5-65 (105)
266 3f6p_A Transcriptional regulat 27.8 98 0.0033 18.2 8.3 90 53-149 25-118 (120)
267 3ntd_A FAD-dependent pyridine 27.1 52 0.0018 26.0 3.5 39 52-90 522-560 (565)
268 3lfu_A DNA helicase II; SF1 he 27.0 1.1E+02 0.0037 24.7 5.4 44 33-76 29-76 (647)
269 3kto_A Response regulator rece 26.8 1.1E+02 0.0037 18.5 6.1 76 74-152 46-128 (136)
270 4aec_A Cysteine synthase, mito 26.7 2.3E+02 0.0078 22.1 9.7 75 34-112 149-228 (430)
271 2rdm_A Response regulator rece 26.6 1E+02 0.0036 18.2 7.0 93 53-154 28-127 (132)
272 1t3k_A Arath CDC25, dual-speci 26.5 79 0.0027 20.4 3.8 40 52-91 83-132 (152)
273 1h75_A Glutaredoxin-like prote 26.4 86 0.0029 17.1 6.1 38 56-93 2-40 (81)
274 3cg4_A Response regulator rece 26.2 1.1E+02 0.0038 18.4 10.5 102 41-149 21-126 (142)
275 3pct_A Class C acid phosphatas 25.8 1.8E+02 0.0063 20.9 5.9 40 42-81 105-146 (260)
276 4h86_A Peroxiredoxin type-2; o 24.9 1.8E+02 0.006 20.2 8.6 60 53-112 68-139 (199)
277 2ht9_A Glutaredoxin-2; thiored 24.7 1.4E+02 0.0049 19.1 7.8 46 56-101 50-99 (146)
278 3ics_A Coenzyme A-disulfide re 24.6 60 0.0021 26.0 3.5 39 52-90 539-577 (588)
279 2wlr_A Putative thiosulfate su 24.6 1.1E+02 0.0038 23.4 4.9 48 42-89 345-394 (423)
280 3hjh_A Transcription-repair-co 24.5 78 0.0027 25.1 4.0 66 53-132 381-446 (483)
281 3tb6_A Arabinose metabolism tr 24.5 1.8E+02 0.0061 20.2 6.6 41 48-88 39-81 (298)
282 1okg_A Possible 3-mercaptopyru 24.5 99 0.0034 23.4 4.5 52 40-91 80-134 (373)
283 3jy6_A Transcriptional regulat 24.5 1.8E+02 0.0061 20.1 7.2 63 46-113 29-93 (276)
284 1yt8_A Thiosulfate sulfurtrans 24.4 87 0.003 25.0 4.4 47 43-90 420-467 (539)
285 3ewl_A Uncharacterized conserv 24.0 1.3E+02 0.0044 18.3 7.2 62 70-134 55-119 (142)
286 3r1i_A Short-chain type dehydr 23.9 2E+02 0.0067 20.4 6.7 64 27-92 30-94 (276)
287 2klx_A Glutaredoxin; thioredox 23.7 1.1E+02 0.0036 17.2 6.0 43 56-100 7-50 (89)
288 1m72_A Caspase-1; caspase, cys 23.7 2.1E+02 0.0071 20.6 8.4 47 56-103 34-93 (272)
289 3ovg_A Amidohydrolase; structu 23.6 1.5E+02 0.0052 22.4 5.4 73 43-116 198-276 (363)
290 2lsn_A Reverse transcriptase; 23.5 1.6E+02 0.0056 19.4 5.0 39 42-80 63-104 (165)
291 3utn_X Thiosulfate sulfurtrans 23.4 1.6E+02 0.0056 21.9 5.5 39 53-91 274-313 (327)
292 3egc_A Putative ribose operon 23.4 1.9E+02 0.0065 20.1 6.5 41 49-89 33-75 (291)
293 2l82_A Designed protein OR32; 23.4 1.4E+02 0.0049 18.6 9.5 36 68-103 90-128 (162)
294 3uug_A Multiple sugar-binding 23.1 2E+02 0.0067 20.4 5.8 40 48-88 27-69 (330)
295 1yt8_A Thiosulfate sulfurtrans 23.1 88 0.003 24.9 4.1 36 54-89 322-358 (539)
296 3o74_A Fructose transport syst 22.8 1.9E+02 0.0064 19.8 6.5 41 48-88 26-68 (272)
297 1rzw_A Protein AF2095(GR4); be 22.8 1.5E+02 0.0052 18.7 5.2 39 46-84 39-78 (123)
298 1jbq_A B, cystathionine beta-s 22.6 2.7E+02 0.0093 21.6 8.2 67 34-100 136-206 (435)
299 3fho_A ATP-dependent RNA helic 22.4 2.8E+02 0.0095 21.6 7.8 91 33-132 165-267 (508)
300 3kke_A LACI family transcripti 22.3 2.1E+02 0.0071 20.1 6.3 65 44-112 35-101 (303)
301 2z83_A Helicase/nucleoside tri 22.1 78 0.0027 24.6 3.6 43 33-75 28-71 (459)
302 3pff_A ATP-citrate synthase; p 22.0 3.8E+02 0.013 23.0 10.0 60 55-114 655-718 (829)
303 2orw_A Thymidine kinase; TMTK, 21.9 1.1E+02 0.0039 20.3 4.0 29 36-64 13-41 (184)
304 1zzo_A RV1677; thioredoxin fol 21.8 1.3E+02 0.0046 17.7 8.7 72 62-134 35-111 (136)
305 2lci_A Protein OR36; structura 21.7 1.4E+02 0.0049 18.0 8.9 58 43-100 38-97 (134)
306 3mwy_W Chromo domain-containin 21.6 3.5E+02 0.012 22.7 7.6 84 35-118 264-358 (800)
307 1k66_A Phytochrome response re 21.5 1.4E+02 0.0049 17.9 6.6 71 77-150 61-138 (149)
308 3gt7_A Sensor protein; structu 21.4 1.5E+02 0.0053 18.3 7.0 91 53-150 30-127 (154)
309 3rot_A ABC sugar transporter, 21.3 2.2E+02 0.0074 19.9 7.5 66 67-132 149-225 (297)
310 2nn3_C Caspase-1; cysteine pro 21.2 2.5E+02 0.0087 20.7 7.1 46 56-102 62-120 (310)
311 1wkv_A Cysteine synthase; homo 21.1 2.8E+02 0.0095 21.1 8.5 65 35-100 123-190 (389)
312 1srv_A Protein (groel (HSP60 c 20.9 1.9E+02 0.0064 19.0 6.6 77 24-101 21-102 (145)
313 2va8_A SSO2462, SKI2-type heli 20.8 1.8E+02 0.0063 23.8 5.7 60 33-92 53-116 (715)
314 2l5g_B Putative uncharacterize 20.8 56 0.0019 16.6 1.6 14 136-149 3-16 (42)
315 3l49_A ABC sugar (ribose) tran 20.7 2.2E+02 0.0074 19.7 6.2 68 43-112 24-93 (291)
316 1wz3_A Autophagy 12B, ATG12B, 20.7 1.5E+02 0.0051 17.9 4.6 38 25-63 25-62 (96)
317 2e7p_A Glutaredoxin; thioredox 20.7 1.4E+02 0.0048 17.5 8.2 61 40-101 6-70 (116)
318 3upu_A ATP-dependent DNA helic 20.3 2.2E+02 0.0076 21.9 5.9 39 36-74 55-94 (459)
319 3qiv_A Short-chain dehydrogena 20.3 2.2E+02 0.0074 19.5 8.1 47 46-92 25-71 (253)
320 2p9j_A Hypothetical protein AQ 20.2 1.7E+02 0.0058 18.3 8.2 60 44-106 42-102 (162)
No 1
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.98 E-value=2.2e-32 Score=205.21 Aligned_cols=143 Identities=29% Similarity=0.456 Sum_probs=113.7
Q ss_pred cchhccchhhhhhhcCCCCccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc-CCeEEEEECCCCH
Q psy13224 12 KLRLLHPVTSAMCTQFPDPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH-GHIYLRLDGTTKV 90 (160)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~-~~~~~~~~g~~~~ 90 (160)
...++||.+..- .......++|+..|.++|..+.+.++|+||||++..+++.+.+.|... |+.+..++|+++.
T Consensus 76 rq~~~hP~l~~~------~~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~ 149 (271)
T 1z5z_A 76 KQIVDHPALLKG------GEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSK 149 (271)
T ss_dssp HHHTTCTHHHHC------SCCCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCH
T ss_pred HHHcCCHHHhcC------CccccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCH
Confidence 345678866541 112344689999999999998888899999999999999999999985 9999999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEeC
Q psy13224 91 DQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 160 (160)
Q Consensus 91 ~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~r 160 (160)
++|..+++.|++++...++|++++++++|+|++.+++||+||+||||..+.||+||++|+||+++|.||+
T Consensus 150 ~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~ 219 (271)
T 1z5z_A 150 KERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHK 219 (271)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEE
Confidence 9999999999976677789999999999999999999999999999999999999999999999999985
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.9e-28 Score=205.07 Aligned_cols=125 Identities=54% Similarity=0.895 Sum_probs=118.9
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCC-CceEEEEecc
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDA-RIFCFILSTR 114 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~-~~~vll~~~~ 114 (160)
.++|+..|.++|..+.+.|+|+||||++..+++.|.+.|...|+.+..++|+++.++|..+++.|++++ ...++|++++
T Consensus 554 ~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~ 633 (800)
T 3mwy_W 554 SSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTR 633 (800)
T ss_dssp TCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHH
T ss_pred cChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecc
Confidence 589999999999999888999999999999999999999999999999999999999999999998543 3458999999
Q ss_pred ccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEeC
Q psy13224 115 SGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 160 (160)
Q Consensus 115 ~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~r 160 (160)
++++|+|++.|++||++|++|||..+.||+||+||+||+++|.|||
T Consensus 634 agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyr 679 (800)
T 3mwy_W 634 AGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYR 679 (800)
T ss_dssp HHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEE
T ss_pred cccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEE
Confidence 9999999999999999999999999999999999999999999996
No 3
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.95 E-value=2.3e-27 Score=196.30 Aligned_cols=127 Identities=39% Similarity=0.684 Sum_probs=117.4
Q ss_pred cccCchHHHHHHHHHHHhc-CCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCC-ceEEEE
Q psy13224 34 QYDCGKLQSLDVILRKLKA-GGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDAR-IFCFIL 111 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~-~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~-~~vll~ 111 (160)
...++|+..+..++..+.. .++|+||||++..+++.+...|...|+.+..++|+++.++|..+++.|++++. ..++|+
T Consensus 395 ~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~ 474 (644)
T 1z3i_X 395 PQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFML 474 (644)
T ss_dssp GGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEE
T ss_pred cccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEE
Confidence 3458999999999988754 57899999999999999999999999999999999999999999999986543 358999
Q ss_pred eccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEeC
Q psy13224 112 STRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 160 (160)
Q Consensus 112 ~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~r 160 (160)
+++++++|+|++.+++||++||+|||..+.|++||+||+||+++|.|||
T Consensus 475 st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~ 523 (644)
T 1z3i_X 475 SSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYR 523 (644)
T ss_dssp EGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEE
T ss_pred ecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEE
Confidence 9999999999999999999999999999999999999999999999996
No 4
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.94 E-value=5.2e-27 Score=188.60 Aligned_cols=127 Identities=31% Similarity=0.516 Sum_probs=115.4
Q ss_pred cccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc-CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH-GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS 112 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~-~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~ 112 (160)
...++|+..+.+++......++|+||||++..+++.+.+.|... |+.+..++|+++.++|.++++.|++++...++|++
T Consensus 321 ~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~s 400 (500)
T 1z63_A 321 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 400 (500)
T ss_dssp STTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEE
T ss_pred hhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 34578999999999998888999999999999999999999986 99999999999999999999999866567789999
Q ss_pred ccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEeC
Q psy13224 113 TRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 160 (160)
Q Consensus 113 ~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~r 160 (160)
++++++|+|++.+++||++|++|||..+.|++||++|+||+++|.||+
T Consensus 401 t~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~ 448 (500)
T 1z63_A 401 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHK 448 (500)
T ss_dssp CCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEE
T ss_pred cccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEE
Confidence 999999999999999999999999999999999999999999999985
No 5
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=2.4e-25 Score=156.51 Aligned_cols=127 Identities=16% Similarity=0.135 Sum_probs=112.0
Q ss_pred CCccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceE
Q psy13224 29 DPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFC 108 (160)
Q Consensus 29 ~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~v 108 (160)
+.......+.|+..|.++++.. .++++||||++...++.+.+.|...++.+..+||++++.+|...++.|++ +...
T Consensus 8 q~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~-g~~~- 83 (172)
T 1t5i_A 8 QYYVKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD-FQRR- 83 (172)
T ss_dssp EEEEECCGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSCS-
T ss_pred EEEEECChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHC-CCCc-
Confidence 3344445578999999999853 46799999999999999999999999999999999999999999999973 3333
Q ss_pred EEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 109 FILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 109 ll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+|++|+++++|+|++++++||++|+||++..+.|++||++|.|+...+.+|
T Consensus 84 vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~ 134 (172)
T 1t5i_A 84 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 134 (172)
T ss_dssp EEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEE
T ss_pred EEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEE
Confidence 777889999999999999999999999999999999999999998877654
No 6
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.92 E-value=3.6e-25 Score=154.21 Aligned_cols=124 Identities=17% Similarity=0.238 Sum_probs=110.5
Q ss_pred cccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEE
Q psy13224 32 LIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFIL 111 (160)
Q Consensus 32 ~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~ 111 (160)
.....+.|+..|.++++.. .++++||||++...++.+.+.|...|+.+..+||++++.+|...++.|.+ +.. .+|+
T Consensus 15 ~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~-g~~-~vlv 90 (163)
T 2hjv_A 15 IQVREENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR-GEY-RYLV 90 (163)
T ss_dssp EECCGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSC-SEEE
T ss_pred EECChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc-CCC-eEEE
Confidence 3444567999999999863 56799999999999999999999999999999999999999999999973 333 3778
Q ss_pred eccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 112 STRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 112 ~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+|+++++|+|++++++||++++||++..+.|++||++|.|++..+.+|
T Consensus 91 ~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~ 138 (163)
T 2hjv_A 91 ATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISF 138 (163)
T ss_dssp ECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEE
T ss_pred ECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEE
Confidence 899999999999999999999999999999999999999998887654
No 7
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.92 E-value=6.3e-25 Score=156.09 Aligned_cols=129 Identities=16% Similarity=0.234 Sum_probs=98.6
Q ss_pred CCCccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCce
Q psy13224 28 PDPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIF 107 (160)
Q Consensus 28 ~~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~ 107 (160)
.+.......+.|+..|.++++.. ..++++||||++...++.+.+.|...|+.+..+||++++.+|...++.|++ +...
T Consensus 21 ~q~~~~v~~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~-g~~~ 98 (185)
T 2jgn_A 21 TQKVVWVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS-GKSP 98 (185)
T ss_dssp EEEEEECCGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH-TSSS
T ss_pred eEEEEEeCcHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc-CCCe
Confidence 33344445678999999999863 356799999999999999999999999999999999999999999999974 3333
Q ss_pred EEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 108 CFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 108 vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+|++|+++++|+|+++++.||++|+||++..+.|++||++|.|++..+.+|
T Consensus 99 -vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 149 (185)
T 2jgn_A 99 -ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 149 (185)
T ss_dssp -EEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEE
T ss_pred -EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEE
Confidence 777889999999999999999999999999999999999999988877654
No 8
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.91 E-value=1.5e-24 Score=151.33 Aligned_cols=121 Identities=17% Similarity=0.196 Sum_probs=103.6
Q ss_pred ccCc-hHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEec
Q psy13224 35 YDCG-KLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILST 113 (160)
Q Consensus 35 ~~~~-K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~ 113 (160)
.... |+..|.++++.. .++++||||++...++.+...|...++.+..+||++++.+|...++.|++ +.. .+|++|
T Consensus 12 ~~~~~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~-~vlv~T 87 (165)
T 1fuk_A 12 EEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS-GSS-RILIST 87 (165)
T ss_dssp ESGGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSC-SEEEEE
T ss_pred CcchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHc-CCC-EEEEEc
Confidence 3344 999999999864 46799999999999999999999999999999999999999999999973 333 377788
Q ss_pred cccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 114 RSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 114 ~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+++++|+|++++++||++|+||++..+.|++||++|.|++..+.+|
T Consensus 88 ~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~ 133 (165)
T 1fuk_A 88 DLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINF 133 (165)
T ss_dssp GGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEE
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEE
Confidence 9999999999999999999999999999999999999988877654
No 9
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.91 E-value=2.4e-24 Score=153.78 Aligned_cols=125 Identities=18% Similarity=0.206 Sum_probs=106.0
Q ss_pred CccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEE
Q psy13224 30 PRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCF 109 (160)
Q Consensus 30 ~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vl 109 (160)
.......+.|+..|.+++. ..+.++||||++...++.+.+.|...|+.+..+||++++++|...++.|.+. ... +
T Consensus 33 ~~~~~~~~~K~~~L~~~l~---~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g-~~~-v 107 (191)
T 2p6n_A 33 EVEYVKEEAKMVYLLECLQ---KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG-KKD-V 107 (191)
T ss_dssp EEEECCGGGHHHHHHHHHT---TSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHT-SCS-E
T ss_pred EEEEcChHHHHHHHHHHHH---hCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CCE-E
Confidence 3334445678888887775 3466999999999999999999999999999999999999999999999743 333 7
Q ss_pred EEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 110 ILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 110 l~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
|++|+++++|+|++++++||++|+||++..+.|++||++|.|++..+.+|
T Consensus 108 LvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l 157 (191)
T 2p6n_A 108 LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTF 157 (191)
T ss_dssp EEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEE
T ss_pred EEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEE
Confidence 78899999999999999999999999999999999999999998876554
No 10
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.90 E-value=1.1e-23 Score=152.51 Aligned_cols=127 Identities=20% Similarity=0.254 Sum_probs=110.0
Q ss_pred CCccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceE
Q psy13224 29 DPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFC 108 (160)
Q Consensus 29 ~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~v 108 (160)
...+....+.|+..|.++++. ..++++||||++...++.+.+.|...|+.+..+||++++.+|...++.|.+ +. .-
T Consensus 8 ~~~~~~~~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~-g~-~~ 83 (212)
T 3eaq_A 8 EEAVPAPVRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQ-GE-VR 83 (212)
T ss_dssp CEEEECCTTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHS-SS-CC
T ss_pred eeEEeCCHHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHC-CC-Ce
Confidence 333444557899999999984 346799999999999999999999999999999999999999999999973 33 33
Q ss_pred EEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 109 FILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 109 ll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+|++|+++++|+|++++++||++++||++..+.|++||++|.|+...+.++
T Consensus 84 vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l 134 (212)
T 3eaq_A 84 VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLL 134 (212)
T ss_dssp EEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEE
T ss_pred EEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEE
Confidence 788899999999999999999999999999999999999999988776553
No 11
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.89 E-value=2.7e-23 Score=146.17 Aligned_cols=118 Identities=23% Similarity=0.244 Sum_probs=100.1
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q psy13224 38 GKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGG 117 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~ 117 (160)
.|+..|.++++.. .++++||||++...++.+...|...|+.+..+||++++.+|...++.|++ +.. .+|++|++++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~-g~~-~vLvaT~~~~ 95 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD-GKE-KVLITTNVCA 95 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT-TSC-SEEEECCSCC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc-CCC-eEEEEecchh
Confidence 4888888888643 45799999999999999999999999999999999999999999999973 333 3788899999
Q ss_pred cccccccCCEEEEeCCC------CCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 118 VGINLTGADTVVFYDSD------WNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 118 ~Gldl~~~~~vi~~~~~------~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+|+|++++++||++|+| +++..+.|++||++|.|+...+.++
T Consensus 96 ~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~ 143 (175)
T 2rb4_A 96 RGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNM 143 (175)
T ss_dssp TTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEE
T ss_pred cCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEE
Confidence 99999999999999999 7778899999999999987766543
No 12
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.81 E-value=7.5e-25 Score=153.54 Aligned_cols=119 Identities=17% Similarity=0.215 Sum_probs=107.0
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
+.|+..|.++++. ..+.++||||++...++.+.+.|...++.+..+||++++.+|...++.|. .+...+|++|+++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~--~g~~~vLvaT~~~ 90 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLT--EGRVNVLVATDVA 90 (170)
Confidence 5789999888875 34679999999999999999999999999999999999999999999996 3334488899999
Q ss_pred ccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 117 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 117 ~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
++|+|++++++||++++||++..+.|++||++|.|++..+.++
T Consensus 91 ~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~ 133 (170)
T 2yjt_D 91 ARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISL 133 (170)
Confidence 9999999999999999999999999999999999998876543
No 13
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.87 E-value=3.2e-22 Score=151.82 Aligned_cols=125 Identities=20% Similarity=0.241 Sum_probs=106.3
Q ss_pred ccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEE
Q psy13224 31 RLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFI 110 (160)
Q Consensus 31 ~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll 110 (160)
.+....+.|+..|.++++.. .+.++||||++...++.+.+.|...++.+..+||++++.+|...++.|.+. ..-+|
T Consensus 7 ~i~~~~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g--~~~vL 82 (300)
T 3i32_A 7 AVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQG--EVRVL 82 (300)
T ss_dssp EEECCSSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHT--SCCEE
T ss_pred EEECCHHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcC--CceEE
Confidence 33445567999999999763 377999999999999999999999999999999999999999999999733 33378
Q ss_pred EeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 111 LSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 111 ~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
++|+++++|+|++++++||++++||++..+.|++||++|.|+...+..|
T Consensus 83 VaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l 131 (300)
T 3i32_A 83 VATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLL 131 (300)
T ss_dssp EECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEE
T ss_pred EEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEE
Confidence 8999999999999999999999999999999999999999988776554
No 14
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.87 E-value=3.1e-22 Score=158.14 Aligned_cols=116 Identities=20% Similarity=0.301 Sum_probs=103.9
Q ss_pred ccCchHHHHHHHHHHHh--cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEEC--------CCCHHHHHHHHHHhccCC
Q psy13224 35 YDCGKLQSLDVILRKLK--AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDG--------TTKVDQRQVLMERFNMDA 104 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~--~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g--------~~~~~~r~~~~~~f~~~~ 104 (160)
..++|+..+.+++.... ..++++||||++...++.+.+.|...|+.+..+|| +++..+|...++.|+++.
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~ 419 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE 419 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCC
Confidence 45789999999998865 56789999999999999999999999999999999 899999999999998433
Q ss_pred CceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCC
Q psy13224 105 RIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQ 152 (160)
Q Consensus 105 ~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq 152 (160)
.. +|++|+++++|+|++++++||++|+|||+..+.|++||++|.|+
T Consensus 420 -~~-vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~ 465 (494)
T 1wp9_A 420 -FN-VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP 465 (494)
T ss_dssp -CS-EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC
T ss_pred -ce-EEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC
Confidence 33 68889999999999999999999999999999999999999998
No 15
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.87 E-value=3e-22 Score=171.99 Aligned_cols=125 Identities=22% Similarity=0.209 Sum_probs=113.3
Q ss_pred cccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHh-cCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNF-HGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS 112 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~-~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~ 112 (160)
...++|...|.++++. ..++++||||++...++.+.+.|.. .|+++..+||+++..+|..+++.|+++.+...+|++
T Consensus 485 ~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLva 562 (968)
T 3dmq_A 485 WNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLC 562 (968)
T ss_dssp TTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEEC
T ss_pred cCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEe
Confidence 3456899999999986 4678999999999999999999995 599999999999999999999999855434557788
Q ss_pred ccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEeC
Q psy13224 113 TRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 160 (160)
Q Consensus 113 ~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~r 160 (160)
|+++++|+|++++++||++|+||++..+.|++||++|.||++.|.||+
T Consensus 563 T~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 563 SEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp SCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred cchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEE
Confidence 999999999999999999999999999999999999999999999883
No 16
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.84 E-value=4.6e-21 Score=151.93 Aligned_cols=119 Identities=18% Similarity=0.269 Sum_probs=105.6
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccc
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~ 115 (160)
...|...|.+++.. .+.++||||++...++.+.+.|...++.+..+||+.++.+|...++.|++. ...+|++|++
T Consensus 285 ~~~k~~~l~~~l~~---~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g--~~~vLvaT~v 359 (434)
T 2db3_A 285 KYAKRSKLIEILSE---QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNG--SMKVLIATSV 359 (434)
T ss_dssp GGGHHHHHHHHHHH---CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTS--SCSEEEECGG
T ss_pred cHHHHHHHHHHHHh---CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcC--CCcEEEEchh
Confidence 35677877777764 344699999999999999999999999999999999999999999999733 3338889999
Q ss_pred cccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 116 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 116 ~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+++|+|++++++||+||+|+++..|.||+||++|.|++..+..|
T Consensus 360 ~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~ 403 (434)
T 2db3_A 360 ASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSF 403 (434)
T ss_dssp GTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred hhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEE
Confidence 99999999999999999999999999999999999998877654
No 17
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.84 E-value=6.2e-21 Score=144.85 Aligned_cols=143 Identities=20% Similarity=0.177 Sum_probs=103.6
Q ss_pred Ccchhccchhhh-h--hhcCCC---CccccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEE
Q psy13224 11 PKLRLLHPVTSA-M--CTQFPD---PRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRL 84 (160)
Q Consensus 11 ~~~~~~~~~~~~-~--~~~~~~---~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~ 84 (160)
....++||++.. . +.+... ..-....|+|+..|.++|..+.+.|+|++||+++..+++.++++|...++++..+
T Consensus 76 LRkicnHP~L~~d~~~p~~~~~~~~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~Rl 155 (328)
T 3hgt_A 76 GSLVATHPYLLIDHYMPKSLITRDVPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRY 155 (328)
T ss_dssp HHHHHHCGGGTCCTTCCSCSCSTTHHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEES
T ss_pred HHHHcCChhhhccccCCccccccchhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeC
Confidence 345689998862 1 111111 1113346999999999999999999999999999999999999999999999999
Q ss_pred ECCCCHHHHHHHHHHhccCCCceEEEEeccccccccc-----cccCCEEEEeCCCCCcChh-hHHHHHHHhc--CCCCce
Q psy13224 85 DGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGIN-----LTGADTVVFYDSDWNPTMD-AQAQDRCHRI--GQTRDV 156 (160)
Q Consensus 85 ~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gld-----l~~~~~vi~~~~~~~~~~~-~Q~~gR~~R~--gq~~~v 156 (160)
+|..... +.+. . .....+.|+ +.+++-|+| +..++.||.||++|||... .|++.|+||+ ||+++|
T Consensus 156 DG~~~~~-~~k~----~-~~~~~i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v 228 (328)
T 3hgt_A 156 DGHSIKS-AAAA----N-DFSCTVHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYA 228 (328)
T ss_dssp SSCCC-------------CCSEEEEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------C
T ss_pred CCCchhh-hhhc----c-cCCceEEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcc
Confidence 9995543 2221 1 234566665 456666675 7899999999999999997 8999999999 689999
Q ss_pred EEeC
Q psy13224 157 HIYR 160 (160)
Q Consensus 157 ~i~r 160 (160)
.|||
T Consensus 229 ~V~R 232 (328)
T 3hgt_A 229 PIVR 232 (328)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 9997
No 18
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.84 E-value=1.5e-20 Score=145.89 Aligned_cols=120 Identities=17% Similarity=0.150 Sum_probs=108.3
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccc
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~ 115 (160)
...|...+.+++... .++++||||++...++.+.+.|...++.+..+||+++.++|...++.|.+. ...+|++|++
T Consensus 234 ~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~vlv~T~~ 309 (391)
T 1xti_A 234 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF--QRRILVATNL 309 (391)
T ss_dssp GGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT--CCSEEEESCC
T ss_pred chhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC--CCcEEEECCh
Confidence 456888888888753 567999999999999999999999999999999999999999999999733 3337889999
Q ss_pred cccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 116 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 116 ~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+++|+|++++++||++++||++..+.|++||++|.|++..+.+|
T Consensus 310 ~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 353 (391)
T 1xti_A 310 FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 353 (391)
T ss_dssp CSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEE
T ss_pred hhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999999999999999999998887765
No 19
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.82 E-value=1.4e-20 Score=152.16 Aligned_cols=113 Identities=19% Similarity=0.276 Sum_probs=60.9
Q ss_pred cCchHHHHHHHHHHHh--cCCCeEEEEeccHHHHHHHHHHHHhc------------CCeEEEEECCCCHHHHHHHHHHhc
Q psy13224 36 DCGKLQSLDVILRKLK--AGGHRVLIFTQMTRMLDVLEAFLNFH------------GHIYLRLDGTTKVDQRQVLMERFN 101 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~--~~~~k~lif~~~~~~~~~l~~~l~~~------------~~~~~~~~g~~~~~~r~~~~~~f~ 101 (160)
.++|+..|.++|.... ..+.++||||++..+++.+.+.|... |.....+||+++.++|..+++.|+
T Consensus 370 ~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 449 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 449 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------
T ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhc
Confidence 4789999999998765 56789999999999999999999875 555566677899999999999997
Q ss_pred cCCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhc
Q psy13224 102 MDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRI 150 (160)
Q Consensus 102 ~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 150 (160)
+++... +|++|+++++|+|++++++||+||+|||+..+.||+|| +|.
T Consensus 450 ~~g~~~-vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~ 496 (556)
T 4a2p_A 450 TSKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA 496 (556)
T ss_dssp ----CC-EEEEEC-----------CEEEEETCCSCHHHHHHC-------
T ss_pred ccCceE-EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC
Confidence 423333 77899999999999999999999999999999999999 776
No 20
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.82 E-value=5.2e-20 Score=144.03 Aligned_cols=118 Identities=19% Similarity=0.236 Sum_probs=106.3
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q psy13224 38 GKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGG 117 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~ 117 (160)
.|...+.+++... ...++||||++...++.+.+.|...++.+..+||++++.+|..+++.|+++. ..+|++|++++
T Consensus 262 ~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlv~T~~~~ 337 (410)
T 2j0s_A 262 WKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA--SRVLISTDVWA 337 (410)
T ss_dssp HHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTS--SCEEEECGGGS
T ss_pred hHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCC--CCEEEECChhh
Confidence 4888888888764 3469999999999999999999999999999999999999999999997433 33778999999
Q ss_pred cccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 118 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 118 ~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+|+|++++++||++++||++..+.|++||++|.|++..+.+|
T Consensus 338 ~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~ 379 (410)
T 2j0s_A 338 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINF 379 (410)
T ss_dssp SSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEE
T ss_pred CcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999999999998877664
No 21
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.82 E-value=4.2e-20 Score=141.90 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=105.0
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccc
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~ 115 (160)
...|...+.+++. ..+.++||||++...++.+.+.|+..++.+..+||+.+.++|...++.|.++ ...+|++|++
T Consensus 223 ~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~vlv~T~~ 297 (367)
T 1hv8_A 223 ENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQK--KIRILIATDV 297 (367)
T ss_dssp GGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTT--SSSEEEECTT
T ss_pred hHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcC--CCeEEEECCh
Confidence 3456666666654 5677999999999999999999999999999999999999999999999733 3337788999
Q ss_pred cccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 116 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 116 ~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+++|+|++++++||++++||++..+.|++||++|.|+...+.++
T Consensus 298 ~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 341 (367)
T 1hv8_A 298 MSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISI 341 (367)
T ss_dssp HHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEE
T ss_pred hhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEE
Confidence 99999999999999999999999999999999999998887654
No 22
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.82 E-value=4.8e-20 Score=144.31 Aligned_cols=121 Identities=17% Similarity=0.255 Sum_probs=105.8
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccc
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~ 115 (160)
...|...+.++++.. ..++++||||++...++.+.+.|...++.+..+||+++.++|...++.|++.. ..+|++|++
T Consensus 259 ~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlvaT~~ 335 (417)
T 2i4i_A 259 ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK--SPILVATAV 335 (417)
T ss_dssp GGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTS--SCEEEECHH
T ss_pred cHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCC--CCEEEECCh
Confidence 356888888888753 35679999999999999999999999999999999999999999999997432 338889999
Q ss_pred cccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 116 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 116 ~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+++|+|++++++||++++|+++..+.|++||++|.|+...+.+|
T Consensus 336 ~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~ 379 (417)
T 2i4i_A 336 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 379 (417)
T ss_dssp HHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEE
T ss_pred hhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEE
Confidence 99999999999999999999999999999999999998777654
No 23
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.82 E-value=1e-19 Score=141.81 Aligned_cols=120 Identities=16% Similarity=0.202 Sum_probs=107.3
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccc
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~ 115 (160)
...|...+..+++. ..++++||||++...++.+.+.|...++.+..+||+++..+|...++.|+++ . ..+|++|++
T Consensus 242 ~~~k~~~l~~~~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~-~~vLv~T~~ 317 (400)
T 1s2m_A 242 ERQKLHCLNTLFSK--LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQG-K-VRTLVCSDL 317 (400)
T ss_dssp GGGHHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTT-S-SSEEEESSC
T ss_pred hhhHHHHHHHHHhh--cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcC-C-CcEEEEcCc
Confidence 35688888888875 3467999999999999999999999999999999999999999999999733 3 337889999
Q ss_pred cccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 116 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 116 ~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+++|+|+++++.||++++||++..+.|++||++|.|+...|.+|
T Consensus 318 ~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l 361 (400)
T 1s2m_A 318 LTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINL 361 (400)
T ss_dssp SSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEE
T ss_pred cccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEE
Confidence 99999999999999999999999999999999999998887654
No 24
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.80 E-value=1.6e-19 Score=139.87 Aligned_cols=118 Identities=22% Similarity=0.286 Sum_probs=103.6
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q psy13224 38 GKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGG 117 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~ 117 (160)
.|...+.+++.. ..+.++||||++...++.+.+.|...++.+..+||+++.++|...++.|++ +. ..+|++|++++
T Consensus 229 ~~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~-~~vlv~T~~~~ 304 (395)
T 3pey_A 229 DKFDVLTELYGL--MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFRE-GR-SKVLITTNVLA 304 (395)
T ss_dssp HHHHHHHHHHTT--TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT-TS-CCEEEECGGGS
T ss_pred HHHHHHHHHHHh--ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHC-CC-CCEEEECChhh
Confidence 466666666643 245799999999999999999999999999999999999999999999973 33 33788999999
Q ss_pred cccccccCCEEEEeCCCC------CcChhhHHHHHHHhcCCCCceEEe
Q psy13224 118 VGINLTGADTVVFYDSDW------NPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 118 ~Gldl~~~~~vi~~~~~~------~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+|+|++++++||++++|| ++..+.|++||++|.|+...+.+|
T Consensus 305 ~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~ 352 (395)
T 3pey_A 305 RGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISF 352 (395)
T ss_dssp SSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred cCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEE
Confidence 999999999999999999 999999999999999998877664
No 25
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=141.67 Aligned_cols=119 Identities=20% Similarity=0.212 Sum_probs=93.6
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
..|...+.++++.. .++++|||+++...++.+.+.|...++.+..+||+++.++|...++.|+ .+...+|++|+++
T Consensus 265 ~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~--~g~~~vlv~T~~~ 340 (414)
T 3eiq_A 265 EWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR--SGSSRVLITTDLL 340 (414)
T ss_dssp TTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHS--CC---CEEECSSC
T ss_pred HhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHH--cCCCcEEEECCcc
Confidence 34888888888643 4569999999999999999999999999999999999999999999996 3344578899999
Q ss_pred ccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 117 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 117 ~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
++|+|+++++.||++++||++..+.|++||++|.|+...+.++
T Consensus 341 ~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~ 383 (414)
T 3eiq_A 341 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINM 383 (414)
T ss_dssp C--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEE
T ss_pred ccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEE
Confidence 9999999999999999999999999999999999988877654
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.80 E-value=5.8e-20 Score=148.19 Aligned_cols=113 Identities=16% Similarity=0.266 Sum_probs=76.5
Q ss_pred cCchHHHHHHHHHHHhc--CCCeEEEEeccHHHHHHHHHHHHhcC------------CeEEEEECCCCHHHHHHHHHHhc
Q psy13224 36 DCGKLQSLDVILRKLKA--GGHRVLIFTQMTRMLDVLEAFLNFHG------------HIYLRLDGTTKVDQRQVLMERFN 101 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~--~~~k~lif~~~~~~~~~l~~~l~~~~------------~~~~~~~g~~~~~~r~~~~~~f~ 101 (160)
.++|...|.++|..... .+.++||||++..+++.+.+.|...+ .....+||++++++|..+++.|+
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 46899999999987653 35799999999999999999999763 34555667999999999999997
Q ss_pred cCCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhc
Q psy13224 102 MDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRI 150 (160)
Q Consensus 102 ~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 150 (160)
+++... +|++|+++++|+|++++++||+||+|||+..+.||+|| +|.
T Consensus 449 ~~g~~~-vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~ 495 (555)
T 3tbk_A 449 ASGDNN-ILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA 495 (555)
T ss_dssp ---CCS-EEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT
T ss_pred cCCCee-EEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC
Confidence 424444 67799999999999999999999999999999999999 444
No 27
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.80 E-value=6.8e-19 Score=142.61 Aligned_cols=119 Identities=20% Similarity=0.234 Sum_probs=105.5
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
..|...+.+++... .++++||||++...++.+.+.|...|+.+..+||++++++|....+.|.++. ..+|++|+++
T Consensus 221 ~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~--~~vlVaT~a~ 296 (523)
T 1oyw_A 221 FKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDD--LQIVVATVAF 296 (523)
T ss_dssp SSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEECTTS
T ss_pred CCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCC--CeEEEEechh
Confidence 45677777777642 5679999999999999999999999999999999999999999999997433 3378899999
Q ss_pred ccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 117 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 117 ~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
++|+|+++++.||++++|+++..|.|++||++|.|+...+.+|
T Consensus 297 ~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~ 339 (523)
T 1oyw_A 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLF 339 (523)
T ss_dssp CTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred hCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEE
Confidence 9999999999999999999999999999999999988877654
No 28
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.79 E-value=6.5e-20 Score=146.33 Aligned_cols=116 Identities=19% Similarity=0.289 Sum_probs=102.6
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccc
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~ 115 (160)
.+.|...+.++++. ..++++||||++...++.+.+.|. +..++|+++..+|..+++.|++ +... +|++|++
T Consensus 333 ~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~-g~~~-vLv~T~~ 403 (472)
T 2fwr_A 333 SKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRT-GRFR-AIVSSQV 403 (472)
T ss_dssp CSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHH-SSCS-BCBCSSC
T ss_pred ChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhC-CCCC-EEEEcCc
Confidence 46789999999986 457899999999999999999884 4568999999999999999974 3333 6788999
Q ss_pred cccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCC-CceEEeC
Q psy13224 116 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT-RDVHIYR 160 (160)
Q Consensus 116 ~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~-~~v~i~r 160 (160)
+++|+|+++++.||+++++|++..+.|++||++|.|+. +.|.||.
T Consensus 404 ~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~ 449 (472)
T 2fwr_A 404 LDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYE 449 (472)
T ss_dssp CCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEE
T ss_pred hhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEE
Confidence 99999999999999999999999999999999999998 7898873
No 29
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.79 E-value=2e-19 Score=151.91 Aligned_cols=113 Identities=19% Similarity=0.276 Sum_probs=64.7
Q ss_pred cCchHHHHHHHHHHHh--cCCCeEEEEeccHHHHHHHHHHHHhc------------CCeEEEEECCCCHHHHHHHHHHhc
Q psy13224 36 DCGKLQSLDVILRKLK--AGGHRVLIFTQMTRMLDVLEAFLNFH------------GHIYLRLDGTTKVDQRQVLMERFN 101 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~--~~~~k~lif~~~~~~~~~l~~~l~~~------------~~~~~~~~g~~~~~~r~~~~~~f~ 101 (160)
.++|+..|.++|.... ..+.++||||++..+++.+.+.|... |..+..+||+++..+|..+++.|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~ 690 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------------
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhh
Confidence 4789999999998753 55689999999999999999999873 556677788899999999999997
Q ss_pred cCCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhc
Q psy13224 102 MDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRI 150 (160)
Q Consensus 102 ~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 150 (160)
+++... +|++|+++++|+|++++++||+||+|||+..+.||+|| +|.
T Consensus 691 ~~g~~~-vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~ 737 (797)
T 4a2q_A 691 TSKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA 737 (797)
T ss_dssp ---CCS-EEEEECC-------CCCSEEEEESCCSCHHHHHTC-------
T ss_pred ccCCce-EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC
Confidence 423333 77899999999999999999999999999999999999 776
No 30
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.78 E-value=9.8e-19 Score=136.43 Aligned_cols=119 Identities=22% Similarity=0.244 Sum_probs=103.6
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
..|...+.+++... .+.++||||++...++.+.+.|...++.+..+||+++.++|...++.|.++ ...+|++|+++
T Consensus 251 ~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vlv~T~~~ 326 (412)
T 3fht_A 251 DEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG--KEKVLVTTNVC 326 (412)
T ss_dssp HHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT--SCSEEEECGGG
T ss_pred HHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCC--CCcEEEEcCcc
Confidence 35777777777643 457999999999999999999999999999999999999999999999733 23378899999
Q ss_pred ccccccccCCEEEEeCCCCCc------ChhhHHHHHHHhcCCCCceEEe
Q psy13224 117 GVGINLTGADTVVFYDSDWNP------TMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 117 ~~Gldl~~~~~vi~~~~~~~~------~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
++|+|++++++||++++||++ ..+.|++||++|.|+...+.++
T Consensus 327 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~ 375 (412)
T 3fht_A 327 ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNM 375 (412)
T ss_dssp TSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred ccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEE
Confidence 999999999999999999866 5899999999999988776543
No 31
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.78 E-value=1.1e-19 Score=151.13 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=94.3
Q ss_pred cCchHHHHHHHHHHHhcC---CCeEEEEeccHHHHHHHHHHHHhc------CCeEEEEECC--------CCHHHHHHHHH
Q psy13224 36 DCGKLQSLDVILRKLKAG---GHRVLIFTQMTRMLDVLEAFLNFH------GHIYLRLDGT--------TKVDQRQVLME 98 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~---~~k~lif~~~~~~~~~l~~~l~~~------~~~~~~~~g~--------~~~~~r~~~~~ 98 (160)
.++|+..|.++|...... +.++||||++...++.+.+.|... |+++..+||+ ++..+|..+++
T Consensus 379 ~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~ 458 (699)
T 4gl2_A 379 ENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVIS 458 (699)
T ss_dssp ---CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHH
Confidence 356777888888764332 679999999999999999999987 8999999999 99999999999
Q ss_pred HhccCCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcC
Q psy13224 99 RFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIG 151 (160)
Q Consensus 99 ~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 151 (160)
.|++ +...+|++|+++++|+|+++++.||+||+|||+..+.|++||++|.|
T Consensus 459 ~F~~--g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 459 KFRT--GKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp HHCC-----CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred HHhc--CCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 9963 33447889999999999999999999999999999999999976555
No 32
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.78 E-value=3.3e-19 Score=152.77 Aligned_cols=113 Identities=19% Similarity=0.276 Sum_probs=66.5
Q ss_pred cCchHHHHHHHHHHHh--cCCCeEEEEeccHHHHHHHHHHHHhc------------CCeEEEEECCCCHHHHHHHHHHhc
Q psy13224 36 DCGKLQSLDVILRKLK--AGGHRVLIFTQMTRMLDVLEAFLNFH------------GHIYLRLDGTTKVDQRQVLMERFN 101 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~--~~~~k~lif~~~~~~~~~l~~~l~~~------------~~~~~~~~g~~~~~~r~~~~~~f~ 101 (160)
.++|+..|.++|.... ..+.++||||++..+++.+.+.|... |..+..+||+++..+|..+++.|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 4789999999998764 44689999999999999999999986 555667788899999999999997
Q ss_pred cCCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhc
Q psy13224 102 MDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRI 150 (160)
Q Consensus 102 ~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 150 (160)
+++... +|++|+++++|+|+++++.||+||+|||+..+.||+|| +|.
T Consensus 691 ~~g~~~-VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~ 737 (936)
T 4a2w_A 691 TSKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA 737 (936)
T ss_dssp ---CCS-EEEEECC------CCCCSEEEEESCCSCSHHHHCC-------
T ss_pred ccCCee-EEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC
Confidence 423333 78899999999999999999999999999999999999 676
No 33
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.78 E-value=1.9e-18 Score=141.25 Aligned_cols=117 Identities=16% Similarity=0.278 Sum_probs=100.8
Q ss_pred HHHHHHHHHHh--cCCCeEEEEeccHHHHHHHHHHHHhc---CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccc
Q psy13224 41 QSLDVILRKLK--AGGHRVLIFTQMTRMLDVLEAFLNFH---GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRS 115 (160)
Q Consensus 41 ~~l~~ll~~~~--~~~~k~lif~~~~~~~~~l~~~l~~~---~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~ 115 (160)
..+..+...+. ..+.++||||++...++.+.+.|... ++.+..+||++++.+|...++.|.. +...+|++|++
T Consensus 273 ~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~--g~~~vLVaT~~ 350 (579)
T 3sqw_A 273 AAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK--DESGILVCTDV 350 (579)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH--CSSEEEEECGG
T ss_pred HHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhc--CCCeEEEEcch
Confidence 34444444333 34679999999999999999999987 9999999999999999999999974 33448889999
Q ss_pred cccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 116 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 116 ~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+++|+|++++++||++++|+++..+.|++||++|.|+...+.+|
T Consensus 351 ~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~ 394 (579)
T 3sqw_A 351 GARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLF 394 (579)
T ss_dssp GTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEE
T ss_pred hhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEE
Confidence 99999999999999999999999999999999999988776654
No 34
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.78 E-value=1.2e-18 Score=142.86 Aligned_cols=119 Identities=13% Similarity=0.151 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHhc--CCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 39 KLQSLDVILRKLKA--GGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 39 K~~~l~~ll~~~~~--~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
+...+..+++.+.. .++++||||++...++.+.+.|...|+.+..+||++++++|..+++.|... ...+|++|+++
T Consensus 250 ~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g--~~~VlVAT~a~ 327 (591)
T 2v1x_A 250 TEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSAN--EIQVVVATVAF 327 (591)
T ss_dssp HHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT--SSSEEEECTTS
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC--CCeEEEEechh
Confidence 44445555554432 467999999999999999999999999999999999999999999999733 33388899999
Q ss_pred ccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 117 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 117 ~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
++|+|+++++.||++++|+++..|.|++||++|.|+...+.+|
T Consensus 328 ~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 328 GMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp CTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred hcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 9999999999999999999999999999999999998776654
No 35
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.77 E-value=3.2e-18 Score=139.21 Aligned_cols=106 Identities=16% Similarity=0.258 Sum_probs=96.3
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhc---CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEE
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFH---GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTV 128 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~---~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~v 128 (160)
..+.++||||++...++.+.+.|... ++.+..+||++++.+|..+++.|.+ +...+|++|+++++|+|++++++|
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~vLvaT~~~~~GiDip~v~~V 414 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK--DESGILVCTDVGARGMDFPNVHEV 414 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH--CSSEEEEECGGGTSSCCCTTCCEE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc--CCCCEEEEcchhhcCCCcccCCEE
Confidence 34679999999999999999999986 9999999999999999999999974 334488899999999999999999
Q ss_pred EEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 129 VFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 129 i~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
|++++|+++..|.|++||++|.|+...+.+|
T Consensus 415 I~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~ 445 (563)
T 3i5x_A 415 LQIGVPSELANYIHRIGRTARSGKEGSSVLF 445 (563)
T ss_dssp EEESCCSSTTHHHHHHTTSSCTTCCEEEEEE
T ss_pred EEECCCCchhhhhhhcCccccCCCCceEEEE
Confidence 9999999999999999999999988776554
No 36
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.77 E-value=4.6e-18 Score=136.78 Aligned_cols=119 Identities=11% Similarity=0.126 Sum_probs=101.8
Q ss_pred chHHHHHHHHHHHhcC-CCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEec-cc
Q psy13224 38 GKLQSLDVILRKLKAG-GHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILST-RS 115 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~-~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~-~~ 115 (160)
.|...+.+++...... +.+++||++ ...++.+.+.|...+.++..+||+++..+|.++++.|.+ +... +|++| ++
T Consensus 331 ~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~-g~~~-vLv~T~~~ 407 (510)
T 2oca_A 331 KRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAEN-GKGI-IIVASYGV 407 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHH-CCSC-EEEEEHHH
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhC-CCCC-EEEEEcCh
Confidence 4666777777766554 456777777 778888999999988899999999999999999999983 4444 55666 99
Q ss_pred cccccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCC-ceEEe
Q psy13224 116 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTR-DVHIY 159 (160)
Q Consensus 116 ~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~-~v~i~ 159 (160)
+++|+|+++++.||+++++|++..+.|++||++|.|+.+ .|.||
T Consensus 408 ~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~ 452 (510)
T 2oca_A 408 FSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVW 452 (510)
T ss_dssp HHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEE
T ss_pred hhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEE
Confidence 999999999999999999999999999999999999987 68776
No 37
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.76 E-value=1.3e-18 Score=144.54 Aligned_cols=113 Identities=17% Similarity=0.246 Sum_probs=69.2
Q ss_pred cCchHHHHHHHHHHHh--cCCCeEEEEeccHHHHHHHHHHHHhcC----CeEEEEE--------CCCCHHHHHHHHHHhc
Q psy13224 36 DCGKLQSLDVILRKLK--AGGHRVLIFTQMTRMLDVLEAFLNFHG----HIYLRLD--------GTTKVDQRQVLMERFN 101 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~--~~~~k~lif~~~~~~~~~l~~~l~~~~----~~~~~~~--------g~~~~~~r~~~~~~f~ 101 (160)
.+.|+..|.+++.... ..+.++||||++...++.+.+.|...+ +++..++ |++++++|..+++.|+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 4679999999998764 346799999999999999999999988 8888885 4999999999999997
Q ss_pred cCCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhc
Q psy13224 102 MDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRI 150 (160)
Q Consensus 102 ~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 150 (160)
+++... +|++|+++++|+|+++++.||+||+||++..+.||+|| +|.
T Consensus 458 ~~g~~~-vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~ 504 (696)
T 2ykg_A 458 ASGDHN-ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 504 (696)
T ss_dssp ---CCS-CSEEEESSCCC---CCCSEEEEESCC--CCCC----------
T ss_pred hcCCcc-EEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC
Confidence 313333 68899999999999999999999999999999999999 997
No 38
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.75 E-value=1.7e-18 Score=131.62 Aligned_cols=102 Identities=14% Similarity=0.288 Sum_probs=91.8
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEe
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFY 131 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~ 131 (160)
..++++|||+++.+.++.+.+.|. .+..+||+++..+|.+.++.|+++ . ..+|++|+++++|+|+++++.||++
T Consensus 218 ~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~-~-~~vlv~T~~~~~Gid~~~~~~Vi~~ 291 (337)
T 2z0m_A 218 NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREG-E-YDMLITTDVASRGLDIPLVEKVINF 291 (337)
T ss_dssp CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTT-S-CSEEEECHHHHTTCCCCCBSEEEES
T ss_pred CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcC-C-CcEEEEcCccccCCCccCCCEEEEe
Confidence 456799999999999999988887 578899999999999999999743 2 3378889999999999999999999
Q ss_pred CCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 132 DSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 132 ~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
++||++..+.|++||++|.|+...+.+|
T Consensus 292 ~~~~s~~~~~Q~~GR~gR~g~~g~~~~~ 319 (337)
T 2z0m_A 292 DAPQDLRTYIHRIGRTGRMGRKGEAITF 319 (337)
T ss_dssp SCCSSHHHHHHHHTTBCGGGCCEEEEEE
T ss_pred cCCCCHHHhhHhcCccccCCCCceEEEE
Confidence 9999999999999999999999888776
No 39
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.75 E-value=9e-20 Score=141.55 Aligned_cols=117 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccccc
Q psy13224 39 KLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGV 118 (160)
Q Consensus 39 K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~ 118 (160)
|...+.++++.. .+.++||||++...++.+.+.|+..++.+..+||+++.++|...++.|. .+...+|++|+++++
T Consensus 246 ~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~--~~~~~vlv~T~~~~~ 321 (394)
T 1fuu_A 246 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFR--SGSSRILISTDLLAR 321 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHH--CCCCcEEEECChhhc
Confidence 667777777643 3569999999999999999999999999999999999999999999996 333448889999999
Q ss_pred ccccccCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 119 GINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 119 Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
|+|++++++||++++||++..+.|++||++|.|++..+.+|
T Consensus 322 Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 362 (394)
T 1fuu_A 322 GIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINF 362 (394)
T ss_dssp -----------------------------------------
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEE
Confidence 99999999999999999999999999999999988877654
No 40
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.70 E-value=2.9e-17 Score=137.54 Aligned_cols=121 Identities=19% Similarity=0.213 Sum_probs=102.9
Q ss_pred ccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecc
Q psy13224 35 YDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTR 114 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~ 114 (160)
....|..+|.+++......+.++||||++.+.++.|...|...|+++..+||...+.+|..+...|. .+ . ++++|+
T Consensus 413 ~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~--~g-~-VlIATd 488 (844)
T 1tf5_A 413 TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQ--KG-A-VTIATN 488 (844)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTS--TT-C-EEEEET
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCC--CC-e-EEEeCC
Confidence 3456888888888765556789999999999999999999999999999999988777765554553 23 2 788999
Q ss_pred ccccccccc--------cCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 115 SGGVGINLT--------GADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 115 ~~~~Gldl~--------~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
++|||+|++ +..+||+++.|-++..+.|++||++|.|....+..|
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~ 541 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFY 541 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEE
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEE
Confidence 999999999 788999999999999999999999999988775443
No 41
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.69 E-value=8.1e-17 Score=131.83 Aligned_cols=107 Identities=13% Similarity=0.053 Sum_probs=90.5
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCe--------EEEEECCCCHHHHHHHHHHhccCCC-ceEEEEecccccccccc
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHI--------YLRLDGTTKVDQRQVLMERFNMDAR-IFCFILSTRSGGVGINL 122 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~--------~~~~~g~~~~~~r~~~~~~f~~~~~-~~vll~~~~~~~~Gldl 122 (160)
..+.|+||||++...++.+.+.|...+.. +..+||..+ ++|...++.|.+... ..++|++++++++|+|+
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDi 515 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDA 515 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccc
Confidence 34579999999999999999999876432 667888865 479999999985433 56789999999999999
Q ss_pred ccCCEEEEeCCCCCcChhhHHHHHHHhcCC---CCceEEe
Q psy13224 123 TGADTVVFYDSDWNPTMDAQAQDRCHRIGQ---TRDVHIY 159 (160)
Q Consensus 123 ~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq---~~~v~i~ 159 (160)
++++.||+++++|++..+.|++||++|.|+ +..+.||
T Consensus 516 p~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~ 555 (590)
T 3h1t_A 516 PTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNII 555 (590)
T ss_dssp TTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEE
T ss_pred hheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEE
Confidence 999999999999999999999999999985 4445554
No 42
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.68 E-value=2.2e-18 Score=137.78 Aligned_cols=119 Identities=22% Similarity=0.246 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
..|...+..++... .+.++||||++...++.+.+.|...++.+..+||+++..+|..+++.|. .+...+|++|+++
T Consensus 318 ~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~--~g~~~iLv~T~~~ 393 (479)
T 3fmp_B 318 DEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFR--EGKEKVLVTTNVC 393 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHH--cCCCcEEEEcccc
Confidence 35666666666542 3569999999999999999999999999999999999999999999996 3334488899999
Q ss_pred ccccccccCCEEEEeCCCCCc------ChhhHHHHHHHhcCCCCceEEe
Q psy13224 117 GVGINLTGADTVVFYDSDWNP------TMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 117 ~~Gldl~~~~~vi~~~~~~~~------~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
++|+|+++++.||++|+|+++ ..|.|++||++|.|+...+.++
T Consensus 394 ~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~ 442 (479)
T 3fmp_B 394 ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNM 442 (479)
T ss_dssp -------------------------------------------------
T ss_pred ccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEE
Confidence 999999999999999999754 6899999999999987776543
No 43
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.68 E-value=1.1e-16 Score=125.71 Aligned_cols=105 Identities=19% Similarity=0.180 Sum_probs=91.2
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEE-EEECCCCHHHHHHHHHHhccCCCceEEEEe---
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYL-RLDGTTKVDQRQVLMERFNMDARIFCFILS--- 112 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~-~~~g~~~~~~r~~~~~~f~~~~~~~vll~~--- 112 (160)
..|...+.++++. .++++||||++...++.+.+.|...|+++. .+||. +|. ++.|. .+... +|++
T Consensus 238 ~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~-~g~~~-vLvat~s 306 (414)
T 3oiy_A 238 SRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFK-VGKIN-ILIGVQA 306 (414)
T ss_dssp SCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHH-TTSCS-EEEEECC
T ss_pred cCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHh-CCCCe-EEEEecC
Confidence 3588888888876 357999999999999999999999999998 88884 444 99997 34445 5555
Q ss_pred -cccccccccccc-CCEEEEeCCC--CCcChhhHHHHHHHhcCC
Q psy13224 113 -TRSGGVGINLTG-ADTVVFYDSD--WNPTMDAQAQDRCHRIGQ 152 (160)
Q Consensus 113 -~~~~~~Gldl~~-~~~vi~~~~~--~~~~~~~Q~~gR~~R~gq 152 (160)
|+++++|+|+++ +++||++++| +++..|.|++||++|.|+
T Consensus 307 ~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~ 350 (414)
T 3oiy_A 307 YYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILN 350 (414)
T ss_dssp TTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEET
T ss_pred cCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCC
Confidence 999999999999 9999999999 999999999999999986
No 44
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.68 E-value=1.4e-16 Score=131.68 Aligned_cols=120 Identities=16% Similarity=0.192 Sum_probs=102.3
Q ss_pred ccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecc
Q psy13224 35 YDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTR 114 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~ 114 (160)
+...|..++.+.+......+.++||||++.+.++.+...|...|+++.++||+....++..+...+. .+. ++++|+
T Consensus 455 t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~--~g~--VtVATd 530 (822)
T 3jux_A 455 TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQ--KGM--VTIATN 530 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHS--TTC--EEEEET
T ss_pred cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCC--CCe--EEEEcc
Confidence 3456888888888776566889999999999999999999999999999999966666655555563 333 888999
Q ss_pred ccccccccc--------cCCEEEEeCCCCCcChhhHHHHHHHhcCCCCceEE
Q psy13224 115 SGGVGINLT--------GADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHI 158 (160)
Q Consensus 115 ~~~~Gldl~--------~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i 158 (160)
++|+|+|++ +..+||+++.|-++..+.|++||++|.|....+..
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~ 582 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIF 582 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEE
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEE
Confidence 999999998 77899999999999999999999999999887544
No 45
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.67 E-value=3.6e-16 Score=129.83 Aligned_cols=113 Identities=20% Similarity=0.219 Sum_probs=100.0
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q psy13224 38 GKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGG 117 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~ 117 (160)
++...+.+.+......+.++||||++...++.+.+.|...|+++..+||++++.+|..+++.|.. +...+|++|++++
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~--g~~~VLvaT~~l~ 500 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRL--GHYDCLVGINLLR 500 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHT--TSCSEEEESCCCC
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhc--CCceEEEccChhh
Confidence 46666666666656678899999999999999999999999999999999999999999999963 3333888999999
Q ss_pred cccccccCCEEEEeCC-----CCCcChhhHHHHHHHhcCC
Q psy13224 118 VGINLTGADTVVFYDS-----DWNPTMDAQAQDRCHRIGQ 152 (160)
Q Consensus 118 ~Gldl~~~~~vi~~~~-----~~~~~~~~Q~~gR~~R~gq 152 (160)
+|+|+++++.||++|. |+++..+.|++||++|.|.
T Consensus 501 ~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~ 540 (664)
T 1c4o_A 501 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR 540 (664)
T ss_dssp TTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT
T ss_pred cCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC
Confidence 9999999999999998 8999999999999999864
No 46
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.66 E-value=4.6e-16 Score=129.13 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=101.5
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccc
Q psy13224 38 GKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGG 117 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~ 117 (160)
++...+...+......+.++||||++...++.+.+.|...|+++..+||+.++.+|..+++.|.. +...+|++|++++
T Consensus 429 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~--g~~~VLVaT~~l~ 506 (661)
T 2d7d_A 429 GQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRL--GKYDVLVGINLLR 506 (661)
T ss_dssp THHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHH--TSCSEEEESCCCS
T ss_pred chHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhc--CCeEEEEecchhh
Confidence 45566666666656678899999999999999999999999999999999999999999999973 3333888999999
Q ss_pred cccccccCCEEEEeCC-----CCCcChhhHHHHHHHhcCCCCceEE
Q psy13224 118 VGINLTGADTVVFYDS-----DWNPTMDAQAQDRCHRIGQTRDVHI 158 (160)
Q Consensus 118 ~Gldl~~~~~vi~~~~-----~~~~~~~~Q~~gR~~R~gq~~~v~i 158 (160)
+|+|+++++.||++|. |+++..+.|++||++|. ....|.+
T Consensus 507 ~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~ 551 (661)
T 2d7d_A 507 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIM 551 (661)
T ss_dssp TTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEE
T ss_pred CCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEE
Confidence 9999999999999998 89999999999999998 3444443
No 47
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.64 E-value=6e-16 Score=129.53 Aligned_cols=121 Identities=16% Similarity=0.177 Sum_probs=104.4
Q ss_pred ccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecc
Q psy13224 35 YDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTR 114 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~ 114 (160)
+...|..++.+.+......+.++||||.+.+..+.|...|...|+++.++||.....++..+.+.|. .+. ++++|+
T Consensus 422 ~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr--~G~--VtIATn 497 (853)
T 2fsf_A 422 TEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGY--PAA--VTIATN 497 (853)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTS--TTC--EEEEES
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCC--CCe--EEEecc
Confidence 3456888888888766567889999999999999999999999999999999988788877777774 332 888999
Q ss_pred ccccccccccC-------------------------------------CEEEEeCCCCCcChhhHHHHHHHhcCCCCceE
Q psy13224 115 SGGVGINLTGA-------------------------------------DTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVH 157 (160)
Q Consensus 115 ~~~~Gldl~~~-------------------------------------~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~ 157 (160)
++|||+|++.. .+||+++.|-++..+.|++||++|.|......
T Consensus 498 mAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~ 577 (853)
T 2fsf_A 498 MAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSR 577 (853)
T ss_dssp CCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEE
T ss_pred cccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEE
Confidence 99999999863 69999999999999999999999999887654
Q ss_pred Ee
Q psy13224 158 IY 159 (160)
Q Consensus 158 i~ 159 (160)
.|
T Consensus 578 ~f 579 (853)
T 2fsf_A 578 FY 579 (853)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 48
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.64 E-value=1.7e-17 Score=133.94 Aligned_cols=119 Identities=20% Similarity=0.240 Sum_probs=83.1
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
..|...+.+++... .++++||||++...++.+...|...++.+..+||+++..+|...++.|.+ +...+|++|+++
T Consensus 342 ~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~--g~~~VLVaT~~l 417 (508)
T 3fho_A 342 EHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRV--GTSKVLVTTNVI 417 (508)
T ss_dssp HHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHS--SSCCCCEECC--
T ss_pred HHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHC--CCCeEEEeCChh
Confidence 34666666666542 45799999999999999999999999999999999999999999999963 333488899999
Q ss_pred ccccccccCCEEEEeCCC------CCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 117 GVGINLTGADTVVFYDSD------WNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 117 ~~Gldl~~~~~vi~~~~~------~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
++|+|+++++.||++++| +++..+.|++||++|.|+...+.+|
T Consensus 418 ~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 418 ARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp ---CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEE
T ss_pred hcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEE
Confidence 999999999999999999 7889999999999999988887654
No 49
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.61 E-value=2.4e-15 Score=126.32 Aligned_cols=120 Identities=15% Similarity=0.063 Sum_probs=102.5
Q ss_pred ccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecc
Q psy13224 35 YDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTR 114 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~ 114 (160)
+...|..++.+.+......+.++||||.+.+..+.|...|...|+++.++||.....++..+.+.|. .+ . ++++|+
T Consensus 441 t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr--~G-~-VtIATn 516 (922)
T 1nkt_A 441 TEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGR--RG-G-VTVATN 516 (922)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTS--TT-C-EEEEET
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCC--CC-e-EEEecc
Confidence 3456888888888766667889999999999999999999999999999999987777766666664 33 2 788999
Q ss_pred ccccccccccC----------------------------------------------------CEEEEeCCCCCcChhhH
Q psy13224 115 SGGVGINLTGA----------------------------------------------------DTVVFYDSDWNPTMDAQ 142 (160)
Q Consensus 115 ~~~~Gldl~~~----------------------------------------------------~~vi~~~~~~~~~~~~Q 142 (160)
++|||+|++.. .+||+++.|-++..+.|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999999854 59999999999999999
Q ss_pred HHHHHHhcCCCCceEE
Q psy13224 143 AQDRCHRIGQTRDVHI 158 (160)
Q Consensus 143 ~~gR~~R~gq~~~v~i 158 (160)
++||++|.|.......
T Consensus 597 r~GRTGRqGdpG~s~f 612 (922)
T 1nkt_A 597 LRGRSGRQGDPGESRF 612 (922)
T ss_dssp HHHTSSGGGCCEEEEE
T ss_pred HhcccccCCCCeeEEE
Confidence 9999999998876543
No 50
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.58 E-value=2.7e-15 Score=130.84 Aligned_cols=118 Identities=15% Similarity=0.165 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc--CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 39 KLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 39 K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
+......++..+ ..+++++|||+..+.++.+.+.|... ++.+..+||++++.+|.++++.|.+ + ...+|++|+++
T Consensus 798 ~~~i~~~il~~l-~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~-g-~~~VLVaT~v~ 874 (1151)
T 2eyq_A 798 SMVVREAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH-Q-RFNVLVCTTII 874 (1151)
T ss_dssp HHHHHHHHHHHH-TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHT-T-SCCEEEESSTT
T ss_pred HHHHHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHc-C-CCcEEEECCcc
Confidence 444555555554 46789999999999999999999987 8899999999999999999999973 3 33478899999
Q ss_pred ccccccccCCEEEEeCC-CCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 117 GVGINLTGADTVVFYDS-DWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 117 ~~Gldl~~~~~vi~~~~-~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
++|+|++++++||++++ +|++..+.|++||++|.|++..|+++
T Consensus 875 e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll 918 (1151)
T 2eyq_A 875 ETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLL 918 (1151)
T ss_dssp GGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEE
T ss_pred eeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEE
Confidence 99999999999999988 68999999999999999988777654
No 51
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.56 E-value=1.6e-15 Score=120.43 Aligned_cols=101 Identities=22% Similarity=0.185 Sum_probs=81.0
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEE-
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVF- 130 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~- 130 (160)
+.++++||||++.+.++.+.+.|...++++..+|| ++|.+.++.|.+ +...+|++|+++++|+|++ +++||+
T Consensus 175 ~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~--g~~~vLVaT~v~e~GiDip-v~~VI~~ 247 (440)
T 1yks_A 175 ADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQ--KKPDFILATDIAEMGANLC-VERVLDC 247 (440)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC----------CCCSEEEESSSTTCCTTCC-CSEEEEC
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcC--CCceEEEECChhheeeccC-ceEEEeC
Confidence 45789999999999999999999999999999999 467889999963 3334888999999999999 999986
Q ss_pred ------------------eCCCCCcChhhHHHHHHHhc-CCCCceEEe
Q psy13224 131 ------------------YDSDWNPTMDAQAQDRCHRI-GQTRDVHIY 159 (160)
Q Consensus 131 ------------------~~~~~~~~~~~Q~~gR~~R~-gq~~~v~i~ 159 (160)
+++|.++..+.|++||++|. |++..+.+|
T Consensus 248 g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l 295 (440)
T 1yks_A 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYY 295 (440)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred CccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEE
Confidence 88899999999999999998 566666554
No 52
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.54 E-value=1.2e-14 Score=115.67 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=86.9
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEe
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFY 131 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~ 131 (160)
+.++++|||+++...++.+.+.|...++.+..+||+.. .+.++.|. .+...+|++|+++++|+|+++ +.||++
T Consensus 186 ~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~--~g~~~vLVaT~v~~~GiDip~-~~VI~~ 258 (451)
T 2jlq_A 186 DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTK--LTDWDFVVTTDISEMGANFRA-GRVIDP 258 (451)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGG--SSCCSEEEECGGGGSSCCCCC-SEEEEC
T ss_pred hCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhc--cCCceEEEECCHHHhCcCCCC-CEEEEC
Confidence 34669999999999999999999999999999998654 56888996 333448889999999999999 999998
Q ss_pred C--------------------CCCCcChhhHHHHHHHhcCC-CCceEEe
Q psy13224 132 D--------------------SDWNPTMDAQAQDRCHRIGQ-TRDVHIY 159 (160)
Q Consensus 132 ~--------------------~~~~~~~~~Q~~gR~~R~gq-~~~v~i~ 159 (160)
+ +|.++..+.|++||++|.|. ...+.+|
T Consensus 259 ~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~ 307 (451)
T 2jlq_A 259 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVF 307 (451)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred CCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEE
Confidence 8 89999999999999999997 5555544
No 53
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.54 E-value=3.1e-14 Score=118.24 Aligned_cols=98 Identities=15% Similarity=0.193 Sum_probs=88.6
Q ss_pred CeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCC-
Q psy13224 55 HRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDS- 133 (160)
Q Consensus 55 ~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~- 133 (160)
...+||+.+...++.+.+.|+..++.+..+||++++++|....+.|++.++...+|++|+++++|+|+ ++++||++++
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcc
Confidence 34578899999999999999999999999999999999999999998533445588899999999999 9999999999
Q ss_pred -------------CCCcChhhHHHHHHHhcCCC
Q psy13224 134 -------------DWNPTMDAQAQDRCHRIGQT 153 (160)
Q Consensus 134 -------------~~~~~~~~Q~~gR~~R~gq~ 153 (160)
|++...+.|++||++|.|+.
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~ 432 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSR 432 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSS
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCC
Confidence 78899999999999999976
No 54
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.54 E-value=3e-14 Score=118.99 Aligned_cols=109 Identities=16% Similarity=0.132 Sum_probs=87.3
Q ss_pred HHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcC------------------------------------CeEEEEECCC
Q psy13224 45 VILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHG------------------------------------HIYLRLDGTT 88 (160)
Q Consensus 45 ~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~------------------------------------~~~~~~~g~~ 88 (160)
+++......++++|||+++...++.+...|.... ..+..+||++
T Consensus 243 ~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l 322 (715)
T 2va8_A 243 AYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGL 322 (715)
T ss_dssp HHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTS
T ss_pred HHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCC
Confidence 3343344567899999999999999988887542 2478899999
Q ss_pred CHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEE----eC-------CCCCcChhhHHHHHHHhcCCCCc
Q psy13224 89 KVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVF----YD-------SDWNPTMDAQAQDRCHRIGQTRD 155 (160)
Q Consensus 89 ~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~----~~-------~~~~~~~~~Q~~gR~~R~gq~~~ 155 (160)
+.++|..+.+.|. .+...+|++|+++++|+|+++++.||. || .|++...+.|++||++|.|+.++
T Consensus 323 ~~~~r~~v~~~f~--~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~ 398 (715)
T 2va8_A 323 SKALRDLIEEGFR--QRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQI 398 (715)
T ss_dssp CHHHHHHHHHHHH--TTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSC
T ss_pred CHHHHHHHHHHHH--cCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCC
Confidence 9999999999996 334448889999999999999999998 88 79999999999999999997654
No 55
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.6e-14 Score=124.57 Aligned_cols=112 Identities=14% Similarity=0.088 Sum_probs=93.1
Q ss_pred HHHHHHHHHhcC-CCeEEEEeccHHHHHHHHHHHHhcCCe---------------------------------------E
Q psy13224 42 SLDVILRKLKAG-GHRVLIFTQMTRMLDVLEAFLNFHGHI---------------------------------------Y 81 (160)
Q Consensus 42 ~l~~ll~~~~~~-~~k~lif~~~~~~~~~l~~~l~~~~~~---------------------------------------~ 81 (160)
.+..++..+... +.++|||+++...++.+...|...++. +
T Consensus 330 ~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI 409 (1010)
T 2xgj_A 330 DIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGI 409 (1010)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCe
Confidence 344555554443 459999999999999998888765442 6
Q ss_pred EEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEE----eCC----CCCcChhhHHHHHHHhcCCC
Q psy13224 82 LRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVF----YDS----DWNPTMDAQAQDRCHRIGQT 153 (160)
Q Consensus 82 ~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~----~~~----~~~~~~~~Q~~gR~~R~gq~ 153 (160)
..+||++++.+|..+.+.|.+ +. .-+|++|+++++|+|++.++.||. ||. |+++..+.|++||++|.|+.
T Consensus 410 ~~~Hggl~~~eR~~ve~~F~~-G~-ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d 487 (1010)
T 2xgj_A 410 GIHHSGLLPILKEVIEILFQE-GF-LKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLD 487 (1010)
T ss_dssp EEESTTSCHHHHHHHHHHHHT-TC-CSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTC
T ss_pred eEECCCCCHHHHHHHHHHHhc-CC-CcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCC
Confidence 789999999999999999973 33 338888999999999999999999 998 99999999999999999986
Q ss_pred Cc
Q psy13224 154 RD 155 (160)
Q Consensus 154 ~~ 155 (160)
..
T Consensus 488 ~~ 489 (1010)
T 2xgj_A 488 DR 489 (1010)
T ss_dssp SS
T ss_pred Cc
Confidence 44
No 56
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.52 E-value=1.4e-14 Score=120.42 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=88.1
Q ss_pred hcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEE
Q psy13224 51 KAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVF 130 (160)
Q Consensus 51 ~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~ 130 (160)
.+.+.++||||++.+.++.+.+.|...++++..+||+ +|.++++.|.+ +...+|++|+++++|+|++ +++||+
T Consensus 407 ~~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~--g~~~VLVaTdv~e~GIDip-v~~VI~ 479 (673)
T 2wv9_A 407 TDYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKN--GDWDFVITTDISEMGANFG-ASRVID 479 (673)
T ss_dssp HSCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGT--CCCSEEEECGGGGTTCCCC-CSEEEE
T ss_pred HhCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHC--CCceEEEECchhhcceeeC-CcEEEE
Confidence 4467899999999999999999999999999999993 78899999963 3334888999999999999 999997
Q ss_pred --------------------eCCCCCcChhhHHHHHHHhc-CCCCceEEe
Q psy13224 131 --------------------YDSDWNPTMDAQAQDRCHRI-GQTRDVHIY 159 (160)
Q Consensus 131 --------------------~~~~~~~~~~~Q~~gR~~R~-gq~~~v~i~ 159 (160)
+++|.++..+.|++||++|. |+...+.+|
T Consensus 480 ~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l 529 (673)
T 2wv9_A 480 CRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHY 529 (673)
T ss_dssp CCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEE
T ss_pred CCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEE
Confidence 56888889999999999999 666666554
No 57
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.52 E-value=5.5e-15 Score=117.95 Aligned_cols=100 Identities=17% Similarity=0.195 Sum_probs=83.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEE--
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVF-- 130 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~-- 130 (160)
.++++|||+++...++.+.+.|...++.+..+||. +|...++.|. .+...+|++|+++++|+|+++ ++||+
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~--~g~~~iLVaT~v~~~GiDip~-~~VI~~G 261 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCK--NGDWDFVITTDISEMGANFGA-SRVIDCR 261 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSS--SCCCSEEEESSCC---CCCSC-SEEEECC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhcc--CCCceEEEECChHHhCeecCC-CEEEECC
Confidence 46799999999999999999999999999999985 6677888995 334448889999999999999 99998
Q ss_pred ------------------eCCCCCcChhhHHHHHHHhcCC-CCceEEe
Q psy13224 131 ------------------YDSDWNPTMDAQAQDRCHRIGQ-TRDVHIY 159 (160)
Q Consensus 131 ------------------~~~~~~~~~~~Q~~gR~~R~gq-~~~v~i~ 159 (160)
|++|.++..+.|++||++|.|. ...+.+|
T Consensus 262 ~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~ 309 (459)
T 2z83_A 262 KSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHY 309 (459)
T ss_dssp EECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred cccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEE
Confidence 7799999999999999999996 5555543
No 58
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.51 E-value=3.1e-15 Score=125.84 Aligned_cols=121 Identities=16% Similarity=0.183 Sum_probs=97.1
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHH--------HHHHHHHHHHh---cCCeEEEEECCCCHHHHHHHHHHhccCCC
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTR--------MLDVLEAFLNF---HGHIYLRLDGTTKVDQRQVLMERFNMDAR 105 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~--------~~~~l~~~l~~---~~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 105 (160)
..+...+.+.+......+++++|||+..+ .+..+.+.|.. .++.+..+||++++++|..+++.|.+ +
T Consensus 561 ~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~--G 638 (780)
T 1gm5_A 561 MDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAE--G 638 (780)
T ss_dssp SSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTT--T
T ss_pred cchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHC--C
Confidence 34566666777666677889999998653 35677777877 47788999999999999999999963 3
Q ss_pred ceEEEEeccccccccccccCCEEEEeCCCC-CcChhhHHHHHHHhcCCCCceEEe
Q psy13224 106 IFCFILSTRSGGVGINLTGADTVVFYDSDW-NPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 106 ~~vll~~~~~~~~Gldl~~~~~vi~~~~~~-~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
...+|++|+++++|+|+++++.||++++++ +...+.|++||++|.|++..|.++
T Consensus 639 ~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill 693 (780)
T 1gm5_A 639 RYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLV 693 (780)
T ss_dssp SSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECC
T ss_pred CCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEE
Confidence 334888999999999999999999999985 678888999999999988777643
No 59
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.50 E-value=3.3e-14 Score=118.59 Aligned_cols=103 Identities=19% Similarity=0.161 Sum_probs=87.3
Q ss_pred hcCCCeEEEEeccHHHHHHHHHHHHhc------------------------------CCeEEEEECCCCHHHHHHHHHHh
Q psy13224 51 KAGGHRVLIFTQMTRMLDVLEAFLNFH------------------------------GHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 51 ~~~~~k~lif~~~~~~~~~l~~~l~~~------------------------------~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
...++++|||+++...++.+...|... +..+..+||++++++|..+.+.|
T Consensus 239 ~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 318 (702)
T 2p6r_A 239 VAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAF 318 (702)
T ss_dssp HHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHH
T ss_pred HhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHH
Confidence 346789999999999988888877642 13467799999999999999999
Q ss_pred ccCCCceEEEEeccccccccccccCCEEEE----eC---CCCCcChhhHHHHHHHhcCCCCc
Q psy13224 101 NMDARIFCFILSTRSGGVGINLTGADTVVF----YD---SDWNPTMDAQAQDRCHRIGQTRD 155 (160)
Q Consensus 101 ~~~~~~~vll~~~~~~~~Gldl~~~~~vi~----~~---~~~~~~~~~Q~~gR~~R~gq~~~ 155 (160)
.+ +...+|++|+++++|+|+++++.||. || .|+++..+.|++||++|.|+.++
T Consensus 319 ~~--g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~ 378 (702)
T 2p6r_A 319 RR--GNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDER 378 (702)
T ss_dssp HT--TSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSC
T ss_pred HC--CCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCC
Confidence 63 34448889999999999999999998 66 78999999999999999997655
No 60
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.50 E-value=2.2e-14 Score=124.65 Aligned_cols=117 Identities=14% Similarity=0.109 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhcC-CCeEEEEeccHHHHHHHHHHHHhcCCe--------------------------------------
Q psy13224 40 LQSLDVILRKLKAG-GHRVLIFTQMTRMLDVLEAFLNFHGHI-------------------------------------- 80 (160)
Q Consensus 40 ~~~l~~ll~~~~~~-~~k~lif~~~~~~~~~l~~~l~~~~~~-------------------------------------- 80 (160)
...+..++..+... +.++|||+++...++.+...|...++.
T Consensus 426 ~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 505 (1108)
T 3l9o_A 426 KGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRR 505 (1108)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHH
T ss_pred hhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhc
Confidence 44555666655444 459999999999999999887653332
Q ss_pred -EEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCCCCCcCh--------hhHHHHHHHhcC
Q psy13224 81 -YLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTM--------DAQAQDRCHRIG 151 (160)
Q Consensus 81 -~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~--------~~Q~~gR~~R~g 151 (160)
+..+||++++.+|..++..|.+ +..-+|++|+++++|+|+++++.||+++.+|+... |.|++||++|.|
T Consensus 506 gV~~~Hg~l~~~~R~~v~~~F~~--G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G 583 (1108)
T 3l9o_A 506 GIGIHHSGLLPILKEVIEILFQE--GFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 583 (1108)
T ss_dssp TEEEECSCSCHHHHHHHHHHHHH--TCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSS
T ss_pred CeeeecCCCCHHHHHHHHHHHhC--CCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCC
Confidence 6889999999999999999963 33348889999999999999999998888776654 899999999999
Q ss_pred CCCceEE
Q psy13224 152 QTRDVHI 158 (160)
Q Consensus 152 q~~~v~i 158 (160)
+.+..++
T Consensus 584 ~d~~G~~ 590 (1108)
T 3l9o_A 584 LDDRGIV 590 (1108)
T ss_dssp SCSSEEE
T ss_pred CCCceEE
Confidence 7655433
No 61
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.49 E-value=1.9e-14 Score=118.60 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=85.5
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEE---
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTV--- 128 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~v--- 128 (160)
+.+.++|||+++...++.+.+.|...++++..+||. +|.+.++.|.+ +...+|++|+++++|+|++ +++|
T Consensus 353 ~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~--g~~~VLVaTdv~~rGiDi~-v~~VId~ 425 (618)
T 2whx_A 353 DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKL--TDWDFVVTTDISEMGANFR-AGRVIDP 425 (618)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHH--SCCSEEEECGGGGTTCCCC-CSEEEEC
T ss_pred hCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcC--CCcEEEEECcHHHcCcccC-ceEEEEC
Confidence 457799999999999999999999999999999984 68889999963 3334888999999999997 8888
Q ss_pred -----------------EEeCCCCCcChhhHHHHHHHhcCC-CCceEE
Q psy13224 129 -----------------VFYDSDWNPTMDAQAQDRCHRIGQ-TRDVHI 158 (160)
Q Consensus 129 -----------------i~~~~~~~~~~~~Q~~gR~~R~gq-~~~v~i 158 (160)
|++++|.++..+.||+||++|.|. +..+.+
T Consensus 426 g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~ 473 (618)
T 2whx_A 426 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYV 473 (618)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEE
T ss_pred cceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEE
Confidence 777888899999999999999975 444444
No 62
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.49 E-value=4.9e-14 Score=111.65 Aligned_cols=101 Identities=19% Similarity=0.204 Sum_probs=85.8
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCE----
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADT---- 127 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~---- 127 (160)
+.+.++||||++.+.++.+.+.|...++.+..+||+ +|.+.++.|.+. ...+|++|+++++|+|++ +.+
T Consensus 169 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g--~~~vLVaT~v~e~GiDip-~~~VI~~ 241 (431)
T 2v6i_A 169 EFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSE--KWDFVITTDISEMGANFK-ADRVIDP 241 (431)
T ss_dssp SCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHS--CCSEEEECGGGGTSCCCC-CSEEEEC
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCC--CCeEEEECchHHcCcccC-CcEEEec
Confidence 456799999999999999999999999999999996 677899999643 334888999999999999 555
Q ss_pred -------------EEEeCCCCCcChhhHHHHHHHhcCC-CCceEEe
Q psy13224 128 -------------VVFYDSDWNPTMDAQAQDRCHRIGQ-TRDVHIY 159 (160)
Q Consensus 128 -------------vi~~~~~~~~~~~~Q~~gR~~R~gq-~~~v~i~ 159 (160)
+|+++.|.+...+.|++||++|.|. ...+.+|
T Consensus 242 g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 242 RKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp CEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred CccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 5788889999999999999999995 4455555
No 63
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.48 E-value=6.9e-14 Score=116.95 Aligned_cols=112 Identities=17% Similarity=0.090 Sum_probs=91.0
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc------------------C---------------CeEEEE
Q psy13224 38 GKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH------------------G---------------HIYLRL 84 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~------------------~---------------~~~~~~ 84 (160)
.+...+.+++ ..++++|||+++...++.+...|... + ..+..+
T Consensus 225 ~~~~~~~~~~----~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~ 300 (720)
T 2zj8_A 225 SWEELVYDAI----RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFH 300 (720)
T ss_dssp STTHHHHHHH----HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEE
T ss_pred HHHHHHHHHH----hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeee
Confidence 3444444443 45789999999999988888887643 1 247889
Q ss_pred ECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEE----eC----CCCCcChhhHHHHHHHhcCCCCc
Q psy13224 85 DGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVF----YD----SDWNPTMDAQAQDRCHRIGQTRD 155 (160)
Q Consensus 85 ~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~----~~----~~~~~~~~~Q~~gR~~R~gq~~~ 155 (160)
||++++++|..+.+.|.+ +...+|++|+++++|+|+++++.||. || .|+++..+.|++||++|.|+.+.
T Consensus 301 h~~l~~~~R~~v~~~f~~--g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~ 377 (720)
T 2zj8_A 301 HAGLGRDERVLVEENFRK--GIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEV 377 (720)
T ss_dssp CTTSCHHHHHHHHHHHHT--TSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSE
T ss_pred cCCCCHHHHHHHHHHHHC--CCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCC
Confidence 999999999999999963 33447889999999999999999998 66 58899999999999999997654
No 64
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.47 E-value=8.7e-14 Score=117.22 Aligned_cols=104 Identities=14% Similarity=0.071 Sum_probs=89.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHh-----------cCCeEEEEECCCCHHHHHHHHHHhcc---CCCceEEEEecccccc
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNF-----------HGHIYLRLDGTTKVDQRQVLMERFNM---DARIFCFILSTRSGGV 118 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~-----------~~~~~~~~~g~~~~~~r~~~~~~f~~---~~~~~vll~~~~~~~~ 118 (160)
.++++|||++....++.+.+.|.. .++.+..+||++++++|..+++.|.. ..+...+|++|+++++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~ 381 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAET 381 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHh
Confidence 467999999999999999998875 58889999999999999999999941 1556678999999999
Q ss_pred ccccccCCEEEEeCC------------------CCCcChhhHHHHHHHhcCCCCceE
Q psy13224 119 GINLTGADTVVFYDS------------------DWNPTMDAQAQDRCHRIGQTRDVH 157 (160)
Q Consensus 119 Gldl~~~~~vi~~~~------------------~~~~~~~~Q~~gR~~R~gq~~~v~ 157 (160)
|+|++++++||.++. |.+...+.||+||++|. +...|+
T Consensus 382 GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~ 437 (773)
T 2xau_A 382 SLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCF 437 (773)
T ss_dssp TCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEE
T ss_pred CcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEE
Confidence 999999999999766 78899999999999998 333343
No 65
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.43 E-value=2e-13 Score=118.65 Aligned_cols=88 Identities=17% Similarity=0.181 Sum_probs=74.8
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEE-EEECCCCHHHHHHHHHHhccCCCceEEEEe---
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYL-RLDGTTKVDQRQVLMERFNMDARIFCFILS--- 112 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~-~~~g~~~~~~r~~~~~~f~~~~~~~vll~~--- 112 (160)
..|...|.+++.. .+.++||||++...++.+...|...|+.+. .+|| +|.+ ++.|.+ +... +|++
T Consensus 295 ~~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~-G~~~-VLVatas 363 (1104)
T 4ddu_A 295 SRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKV-GKIN-ILIGVQA 363 (1104)
T ss_dssp CCCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHH-TSCS-EEEEETT
T ss_pred cCHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHC-CCCC-EEEEecC
Confidence 3588888888876 347999999999999999999999999998 8888 2555 999973 4444 5555
Q ss_pred -cccccccccccc-CCEEEEeCCCC
Q psy13224 113 -TRSGGVGINLTG-ADTVVFYDSDW 135 (160)
Q Consensus 113 -~~~~~~Gldl~~-~~~vi~~~~~~ 135 (160)
|+++++|+|+++ +++||+||+|.
T Consensus 364 ~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 364 YYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp THHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCeeEecCcCCCCCCEEEEECCCC
Confidence 999999999999 99999999998
No 66
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.43 E-value=4.4e-13 Score=115.60 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=92.7
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCC--------------------------------------
Q psy13224 38 GKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGH-------------------------------------- 79 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~-------------------------------------- 79 (160)
.+...+.+.+.. ....++|||+.+...++.+...|...++
T Consensus 322 ~~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~ 399 (997)
T 4a4z_A 322 KTWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLE 399 (997)
T ss_dssp THHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhh
Confidence 455566666653 2346999999999999999998876655
Q ss_pred -eEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCCCC---------CcChhhHHHHHHHh
Q psy13224 80 -IYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDW---------NPTMDAQAQDRCHR 149 (160)
Q Consensus 80 -~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~---------~~~~~~Q~~gR~~R 149 (160)
.+..+||++++.+|..+...|.. +..-+|++|+++++|+|+++ .+||+++.++ ++..|.|++||++|
T Consensus 400 ~gi~~~H~gl~~~~R~~v~~~F~~--G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR 476 (997)
T 4a4z_A 400 RGIAVHHGGLLPIVKELIEILFSK--GFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGR 476 (997)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHT--TCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCC
T ss_pred cCeeeecCCCCHHHHHHHHHHHHC--CCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhccccc
Confidence 46899999999999999999973 33338889999999999999 6777766555 89999999999999
Q ss_pred cCCCCceE
Q psy13224 150 IGQTRDVH 157 (160)
Q Consensus 150 ~gq~~~v~ 157 (160)
.|+.....
T Consensus 477 ~G~~~~G~ 484 (997)
T 4a4z_A 477 RGLDSTGT 484 (997)
T ss_dssp TTTCSSEE
T ss_pred CCCCcceE
Confidence 99766543
No 67
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.39 E-value=4.5e-13 Score=110.76 Aligned_cols=92 Identities=21% Similarity=0.144 Sum_probs=79.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEE---
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVV--- 129 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi--- 129 (160)
.++++|||+++.+.++.+.+.|+..++++..+||++++++ |. ++ ...+|++|+++++|+|++ ++.||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~-~~-~~~VLVATdVaerGIDId-V~~VI~~G 464 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IP-TI-GDVVVVATDALMTGYTGD-FDSVIDCN 464 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SC-SS-SCEEEEECTTHHHHCCCC-BSEEEECC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HH-hC-CCcEEEECChHHccCCCC-CcEEEecC
Confidence 4679999999999999999999999999999999999875 33 22 236888999999999986 99888
Q ss_pred -------EeC-----------CCCCcChhhHHHHHHHhcCCCCc
Q psy13224 130 -------FYD-----------SDWNPTMDAQAQDRCHRIGQTRD 155 (160)
Q Consensus 130 -------~~~-----------~~~~~~~~~Q~~gR~~R~gq~~~ 155 (160)
+|| .|.+...+.||+||++| |....
T Consensus 465 l~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~ 507 (666)
T 3o8b_A 465 TCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI 507 (666)
T ss_dssp EEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE
T ss_pred cccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE
Confidence 566 78888999999999999 76554
No 68
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.36 E-value=3.7e-13 Score=116.66 Aligned_cols=88 Identities=19% Similarity=0.151 Sum_probs=67.6
Q ss_pred CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe---c
Q psy13224 37 CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS---T 113 (160)
Q Consensus 37 ~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~---~ 113 (160)
..|...|.++++. .+.++||||++...++.+.+.|... +++..+||+.. ..++.|. .+...++++. |
T Consensus 261 ~~k~~~L~~ll~~---~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~-~G~~~VLVaTas~T 330 (1054)
T 1gku_B 261 DESISTLSSILEK---LGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFV-EGEIDHLIGTAHYY 330 (1054)
T ss_dssp CCCTTTTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHH-HTSCSEEEEECC--
T ss_pred hhHHHHHHHHHhh---cCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHH-cCCCcEEEEecCCC
Confidence 4577777777753 3679999999999999999999988 99999999873 6788897 3444544443 8
Q ss_pred cccccccccccC-CEEEEeCCC
Q psy13224 114 RSGGVGINLTGA-DTVVFYDSD 134 (160)
Q Consensus 114 ~~~~~Gldl~~~-~~vi~~~~~ 134 (160)
+++++|+|++++ ++||++++|
T Consensus 331 dv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 331 GTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp ----CCSCCTTTCCEEEEESCC
T ss_pred CeeEeccccCCcccEEEEeCCC
Confidence 999999999995 999999999
No 69
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.89 E-value=1.2e-08 Score=88.37 Aligned_cols=97 Identities=13% Similarity=0.052 Sum_probs=76.4
Q ss_pred CCeEEEEeccHHHHHHHHHHHHhcC------------CeE-EEEECCC--------------------CH----------
Q psy13224 54 GHRVLIFTQMTRMLDVLEAFLNFHG------------HIY-LRLDGTT--------------------KV---------- 90 (160)
Q Consensus 54 ~~k~lif~~~~~~~~~l~~~l~~~~------------~~~-~~~~g~~--------------------~~---------- 90 (160)
+.+.||||++...+..+.+.|...+ +++ ++++|.. ++
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 4589999999999999999887654 455 4555431 11
Q ss_pred -------------------HHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcC
Q psy13224 91 -------------------DQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIG 151 (160)
Q Consensus 91 -------------------~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 151 (160)
.+|..+.++|.+ +... +|++++++.+|+|.|.+ +++++|.|.+...+.|++||+.|.+
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~-g~i~-ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~ 693 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKN-QDID-LLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIY 693 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHT-TSSS-EEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCC
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHc-CCCe-EEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCC
Confidence 137778888973 3333 77788999999999999 6788999999999999999999998
Q ss_pred CC
Q psy13224 152 QT 153 (160)
Q Consensus 152 q~ 153 (160)
..
T Consensus 694 ~~ 695 (1038)
T 2w00_A 694 DA 695 (1038)
T ss_dssp CT
T ss_pred CC
Confidence 64
No 70
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.81 E-value=8.6e-09 Score=93.10 Aligned_cols=101 Identities=15% Similarity=0.117 Sum_probs=77.3
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHh----------------------------------cCCeEEEEECCCCHHHHHHHH
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNF----------------------------------HGHIYLRLDGTTKVDQRQVLM 97 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~----------------------------------~~~~~~~~~g~~~~~~r~~~~ 97 (160)
..++++||||.+...++..+..|.. ....+...||++++.+|..+.
T Consensus 1153 ~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE 1232 (1724)
T 4f92_B 1153 SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVE 1232 (1724)
T ss_dssp CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHH
T ss_pred cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHH
Confidence 4567999999998877665544421 022367899999999999999
Q ss_pred HHhccCCCceEEEEeccccccccccccCCEEEE----eC------CCCCcChhhHHHHHHHhcCCCC
Q psy13224 98 ERFNMDARIFCFILSTRSGGVGINLTGADTVVF----YD------SDWNPTMDAQAQDRCHRIGQTR 154 (160)
Q Consensus 98 ~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~----~~------~~~~~~~~~Q~~gR~~R~gq~~ 154 (160)
+.|.+ +.. -+|++|++++.|+|++....||. || .+.++..+.|++||++|.|...
T Consensus 1233 ~lF~~-G~i-~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~ 1297 (1724)
T 4f92_B 1233 QLFSS-GAI-QVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDD 1297 (1724)
T ss_dssp HHHHH-TSB-CEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCS
T ss_pred HHHHC-CCC-eEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCC
Confidence 99973 333 37778899999999998777773 22 2467788999999999999743
No 71
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.79 E-value=7e-09 Score=93.66 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=76.1
Q ss_pred CCeEEEEeccHHHHHHHHHHHHh----c---------------------------------CCeEEEEECCCCHHHHHHH
Q psy13224 54 GHRVLIFTQMTRMLDVLEAFLNF----H---------------------------------GHIYLRLDGTTKVDQRQVL 96 (160)
Q Consensus 54 ~~k~lif~~~~~~~~~l~~~l~~----~---------------------------------~~~~~~~~g~~~~~~r~~~ 96 (160)
++++||||++...+..+++.|.. . ...++..||++++++|..+
T Consensus 317 ~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~v 396 (1724)
T 4f92_B 317 KNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLV 396 (1724)
T ss_dssp SCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHH
Confidence 56899999987765555554432 1 2236789999999999999
Q ss_pred HHHhccCCCceEEEEeccccccccccccCCEEEE----eCCC------CCcChhhHHHHHHHhcCCC
Q psy13224 97 MERFNMDARIFCFILSTRSGGVGINLTGADTVVF----YDSD------WNPTMDAQAQDRCHRIGQT 153 (160)
Q Consensus 97 ~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~----~~~~------~~~~~~~Q~~gR~~R~gq~ 153 (160)
.+.|. .+..-+|++|.+++.|+|+|..+.||. |+|. .++..+.|++||++|.|..
T Consensus 397 E~~F~--~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d 461 (1724)
T 4f92_B 397 EDLFA--DKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYD 461 (1724)
T ss_dssp HHHHH--TTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTC
T ss_pred HHHHH--CCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCC
Confidence 99996 333448889999999999998888874 5543 4678899999999998853
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.15 E-value=1.1e-05 Score=68.63 Aligned_cols=120 Identities=18% Similarity=0.233 Sum_probs=93.1
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHH----------------------------------------
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLN---------------------------------------- 75 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~---------------------------------------- 75 (160)
...|..++.+-+....+.|..|||++.+.+..+.|+.+|.
T Consensus 425 ~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (997)
T 2ipc_A 425 EKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQ 504 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhcccc
Confidence 3467777777776666789999999999999999999998
Q ss_pred ------------------------------------hcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccc
Q psy13224 76 ------------------------------------FHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVG 119 (160)
Q Consensus 76 ------------------------------------~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~G 119 (160)
+.|+++-++++.....| ..++.+= +..--+-++|..+|||
T Consensus 505 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNAK~he~E-AeIIAqA---G~~GaVTIATNMAGRG 580 (997)
T 2ipc_A 505 LKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHHARE-AEIVAQA---GRSKTVTIATNMAGRG 580 (997)
T ss_dssp CSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECSSSHHHH-HHHHHTT---TSTTCEEEECSSTTTT
T ss_pred ccccccccccccccccccccccccccchhhhhhHHHHcCCCeeeccccchHHH-HHHHHhc---CCCCeEEEEecccCCC
Confidence 67888888988765333 3444333 2222367788999999
Q ss_pred cccc-cCC------------------------------------------------------------------------
Q psy13224 120 INLT-GAD------------------------------------------------------------------------ 126 (160)
Q Consensus 120 ldl~-~~~------------------------------------------------------------------------ 126 (160)
.|+. +.+
T Consensus 581 TDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GG 660 (997)
T 2ipc_A 581 TDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGG 660 (997)
T ss_dssp SCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cCeecCCCHHHHHHHHHHhhcccccccccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCC
Confidence 9986 422
Q ss_pred -EEEEeCCCCCcChhhHHHHHHHhcCCCCceEEe
Q psy13224 127 -TVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 159 (160)
Q Consensus 127 -~vi~~~~~~~~~~~~Q~~gR~~R~gq~~~v~i~ 159 (160)
+||-...+-|.....|--||++|.|.......|
T Consensus 661 LhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~ 694 (997)
T 2ipc_A 661 LFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFY 694 (997)
T ss_dssp CCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEE
T ss_pred eEEEeccCCchHHHHHHHhcccccCCCCCCeEEE
Confidence 899999899999999999999999988776544
No 73
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.13 E-value=1.4e-05 Score=64.93 Aligned_cols=109 Identities=12% Similarity=0.189 Sum_probs=66.3
Q ss_pred HHHHHHHHHHh-cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEE-Eecccccc
Q psy13224 41 QSLDVILRKLK-AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFI-LSTRSGGV 118 (160)
Q Consensus 41 ~~l~~ll~~~~-~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll-~~~~~~~~ 118 (160)
..+.+.+..+. ..+..+|||+.+-..++.+.+.+.. .. +..+|.. .+|...++.|.. + ..+++ +.+...++
T Consensus 370 ~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~-~-~~il~~V~~~~~~E 442 (540)
T 2vl7_A 370 PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKT-G-KYLVMLVMRAKESE 442 (540)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHT-S-CCEEEEEC------
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhc-C-CeEEEEEecCceec
Confidence 44555555443 3456899999999999888887764 22 4555554 468889999974 3 33433 37799999
Q ss_pred cccccc----CCEEEEeCCCCCcC------------------------------hhhHHHHHHHhcCCCCce
Q psy13224 119 GINLTG----ADTVVFYDSDWNPT------------------------------MDAQAQDRCHRIGQTRDV 156 (160)
Q Consensus 119 Gldl~~----~~~vi~~~~~~~~~------------------------------~~~Q~~gR~~R~gq~~~v 156 (160)
|+|+++ ++.||++..|+.+. ...|++||+.|-.....+
T Consensus 443 GiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~ 514 (540)
T 2vl7_A 443 GVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVK 514 (540)
T ss_dssp ---------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCE
T ss_pred ceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEE
Confidence 999996 89999999887654 124899999887655544
No 74
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.96 E-value=0.0036 Score=51.66 Aligned_cols=112 Identities=9% Similarity=0.100 Sum_probs=66.2
Q ss_pred HHHHHHHHHHh-cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEec--cccc
Q psy13224 41 QSLDVILRKLK-AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILST--RSGG 117 (160)
Q Consensus 41 ~~l~~ll~~~~-~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~--~~~~ 117 (160)
..+.+.+..+. ..++.++||+.+-..++.+.+.+. .+..- ...+.+..++..+++.|. ++.. +|+++ ...+
T Consensus 434 ~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~--~~~~-vL~~v~~gsf~ 507 (620)
T 4a15_A 434 DRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR--RDHG-TIFAVSGGRLS 507 (620)
T ss_dssp HHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT--TSCC-EEEEETTSCC-
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc--cCCc-EEEEEecCcee
Confidence 33444444433 235578888888888888877776 22222 333334568999999997 3344 44454 5899
Q ss_pred cccccc--cCCEEEEeCCCCCcCh-----------------------------hhHHHHHHHhcCCCCceEE
Q psy13224 118 VGINLT--GADTVVFYDSDWNPTM-----------------------------DAQAQDRCHRIGQTRDVHI 158 (160)
Q Consensus 118 ~Gldl~--~~~~vi~~~~~~~~~~-----------------------------~~Q~~gR~~R~gq~~~v~i 158 (160)
+|+|++ .+..||....|+.+.. ..|++||+.|--....+.+
T Consensus 508 EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ 579 (620)
T 4a15_A 508 EGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACV 579 (620)
T ss_dssp -------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEE
T ss_pred ccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEE
Confidence 999998 6789999888765321 1488888888766555443
No 75
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.08 E-value=0.045 Score=46.35 Aligned_cols=98 Identities=9% Similarity=0.033 Sum_probs=73.7
Q ss_pred cccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHH----HhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEE
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFL----NFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCF 109 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l----~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vl 109 (160)
.++|+|.......+......|.++++.+.+...+....+.+ ...++++..++|+.+..++........ .+...++
T Consensus 397 ~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~-~g~~~Iv 475 (780)
T 1gm5_A 397 DVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLR-NGQIDVV 475 (780)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHH-SSCCCEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHh-cCCCCEE
Confidence 45789998766655555556789999999887655554444 344899999999999999988888886 4456667
Q ss_pred EEeccccccccccccCCEEEEeC
Q psy13224 110 ILSTRSGGVGINLTGADTVVFYD 132 (160)
Q Consensus 110 l~~~~~~~~Gldl~~~~~vi~~~ 132 (160)
+.++......+++.+...||+=+
T Consensus 476 VgT~~ll~~~~~~~~l~lVVIDE 498 (780)
T 1gm5_A 476 IGTHALIQEDVHFKNLGLVIIDE 498 (780)
T ss_dssp EECTTHHHHCCCCSCCCEEEEES
T ss_pred EECHHHHhhhhhccCCceEEecc
Confidence 77777676777888888888755
No 76
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.86 E-value=0.081 Score=40.82 Aligned_cols=99 Identities=12% Similarity=0.081 Sum_probs=72.2
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHh---cCCeEEEEECCCCHHHHHHHHHHhccCCCceEE
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNF---HGHIYLRLDGTTKVDQRQVLMERFNMDARIFCF 109 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~---~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vl 109 (160)
.+++++|.....-.+......+.++||-+++...+..+.+.+.. .++++..++|+.+..++........ .+...++
T Consensus 43 apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~-~~~~~Ii 121 (414)
T 3oiy_A 43 APTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFE-EDDYHIL 121 (414)
T ss_dssp SCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHH-HTCCSEE
T ss_pred eCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhh-cCCCCEE
Confidence 45678999855544444445678999999999988888888877 5889999999999988877777775 2335667
Q ss_pred EEeccccccc---cccccCCEEEEeC
Q psy13224 110 ILSTRSGGVG---INLTGADTVVFYD 132 (160)
Q Consensus 110 l~~~~~~~~G---ldl~~~~~vi~~~ 132 (160)
++++.....- +++.+...+|+=+
T Consensus 122 v~Tp~~l~~~l~~~~~~~~~~iViDE 147 (414)
T 3oiy_A 122 VFSTQFVSKNREKLSQKRFDFVFVDD 147 (414)
T ss_dssp EEEHHHHHHCHHHHTTCCCSEEEESC
T ss_pred EECHHHHHHHHHHhccccccEEEEeC
Confidence 7777655322 4456777777744
No 77
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=94.94 E-value=0.2 Score=44.04 Aligned_cols=99 Identities=12% Similarity=0.081 Sum_probs=75.0
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHh---cCCeEEEEECCCCHHHHHHHHHHhccCCCceEE
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNF---HGHIYLRLDGTTKVDQRQVLMERFNMDARIFCF 109 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~---~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vl 109 (160)
..++++|.....-.+......+.++||-+.+.+.+..+.+.+.. .++.+..++|+.+..++......+. .+...++
T Consensus 100 ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~-~g~~~Il 178 (1104)
T 4ddu_A 100 APTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFE-EDDYHIL 178 (1104)
T ss_dssp CSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHH-TSCCSEE
T ss_pred eCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHh-CCCCCEE
Confidence 45578999976666655556788999999999998888888887 5789999999999888888887775 3446667
Q ss_pred EEeccccccc---cccccCCEEEEeC
Q psy13224 110 ILSTRSGGVG---INLTGADTVVFYD 132 (160)
Q Consensus 110 l~~~~~~~~G---ldl~~~~~vi~~~ 132 (160)
++++.....- +++.+...+|+=+
T Consensus 179 V~Tp~rL~~~l~~l~~~~l~~lViDE 204 (1104)
T 4ddu_A 179 VFSTQFVSKNREKLSQKRFDFVFVDD 204 (1104)
T ss_dssp EEEHHHHHHSHHHHHTSCCSEEEESC
T ss_pred EECHHHHHHHHHhhcccCcCEEEEeC
Confidence 7776655222 4456788887755
No 78
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=94.16 E-value=0.49 Score=29.95 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHhcCCCe-EEEEeccHHH-HHHHHHHHHhcCCeEEEE
Q psy13224 39 KLQSLDVILRKLKAGGHR-VLIFTQMTRM-LDVLEAFLNFHGHIYLRL 84 (160)
Q Consensus 39 K~~~l~~ll~~~~~~~~k-~lif~~~~~~-~~~l~~~l~~~~~~~~~~ 84 (160)
-...|.+++.+++.+|-+ +++|+...+. -..-.+.+++.|..+...
T Consensus 11 dpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtv 58 (162)
T 2l82_A 11 DPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTV 58 (162)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEEC
T ss_pred CHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeee
Confidence 455666677776666643 3455544332 111223345556665443
No 79
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=93.84 E-value=0.54 Score=41.58 Aligned_cols=99 Identities=6% Similarity=-0.025 Sum_probs=72.7
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHHHhccCCCceE
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLMERFNMDARIFC 108 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~v 108 (160)
..++++|.......+-.....+.+++|.+.+...+....+.+.. .++.+..++|..+..++........ .+...+
T Consensus 631 ~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~-~g~~dI 709 (1151)
T 2eyq_A 631 GDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVA-EGKIDI 709 (1151)
T ss_dssp CCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHH-TTCCSE
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHh-cCCCCE
Confidence 44578999775544444455678999999998876655555543 3678899999999988888888876 455667
Q ss_pred EEEeccccccccccccCCEEEEeC
Q psy13224 109 FILSTRSGGVGINLTGADTVVFYD 132 (160)
Q Consensus 109 ll~~~~~~~~Gldl~~~~~vi~~~ 132 (160)
+++++......+.+.+...+|+=+
T Consensus 710 vV~T~~ll~~~~~~~~l~lvIiDE 733 (1151)
T 2eyq_A 710 LIGTHKLLQSDVKFKDLGLLIVDE 733 (1151)
T ss_dssp EEECTHHHHSCCCCSSEEEEEEES
T ss_pred EEECHHHHhCCccccccceEEEec
Confidence 777777777778888887777744
No 80
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=92.36 E-value=1.5 Score=33.72 Aligned_cols=94 Identities=15% Similarity=0.133 Sum_probs=63.8
Q ss_pred ccccCchHHHHHHHHHHHh-cCCCeEEEEeccHHHHHHHHHHHHhc-CC---eEEEEECCCCHHHHHHHHHHhccCCCce
Q psy13224 33 IQYDCGKLQSLDVILRKLK-AGGHRVLIFTQMTRMLDVLEAFLNFH-GH---IYLRLDGTTKVDQRQVLMERFNMDARIF 107 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~-~~~~k~lif~~~~~~~~~l~~~l~~~-~~---~~~~~~g~~~~~~r~~~~~~f~~~~~~~ 107 (160)
..+++||......++.... ..+.++||.+.....+....+.+... +. .+..++|+.+..++...... ..
T Consensus 30 ~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~------~~ 103 (494)
T 1wp9_A 30 LPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR------AK 103 (494)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHH------CS
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccC------CC
Confidence 4557899998877766543 35679999999887776666666654 55 88999999998776554432 34
Q ss_pred EEEEecccccc-----ccccccCCEEEEeC
Q psy13224 108 CFILSTRSGGV-----GINLTGADTVVFYD 132 (160)
Q Consensus 108 vll~~~~~~~~-----Gldl~~~~~vi~~~ 132 (160)
+++++++.... .+++.+.+.||+=+
T Consensus 104 ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 133 (494)
T 1wp9_A 104 VIVATPQTIENDLLAGRISLEDVSLIVFDE 133 (494)
T ss_dssp EEEECHHHHHHHHHTTSCCTTSCSEEEEET
T ss_pred EEEecHHHHHHHHhcCCcchhhceEEEEEC
Confidence 56666655432 34455667776654
No 81
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=91.64 E-value=2.6 Score=30.02 Aligned_cols=95 Identities=15% Similarity=0.113 Sum_probs=59.4
Q ss_pred ccccCchHHHHH-HHHHHHhcC--CCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHHHhccCCC
Q psy13224 33 IQYDCGKLQSLD-VILRKLKAG--GHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLMERFNMDAR 105 (160)
Q Consensus 33 ~~~~~~K~~~l~-~ll~~~~~~--~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 105 (160)
..++++|..... -++..+... +.++||.+.+.+.+..+.+.++. .++.+..+.|+.+..+....+ ..+
T Consensus 87 a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~ 161 (249)
T 3ber_A 87 AETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL-----AKK 161 (249)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH-----HTC
T ss_pred cCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh-----cCC
Confidence 345789987643 333433333 34799999998876666655544 488899999988865544332 234
Q ss_pred ceEEEEeccccc------cccccccCCEEEEeC
Q psy13224 106 IFCFILSTRSGG------VGINLTGADTVVFYD 132 (160)
Q Consensus 106 ~~vll~~~~~~~------~Gldl~~~~~vi~~~ 132 (160)
..++++++.... .++++.+.+.+|+=+
T Consensus 162 ~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 162 PHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249)
T ss_dssp CSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred CCEEEECHHHHHHHHHcCCCcCccccCEEEEcC
Confidence 455666654431 345667777777644
No 82
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=91.19 E-value=3.9 Score=32.91 Aligned_cols=89 Identities=15% Similarity=0.090 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHh-cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEec--ccc
Q psy13224 40 LQSLDVILRKLK-AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILST--RSG 116 (160)
Q Consensus 40 ~~~l~~ll~~~~-~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~--~~~ 116 (160)
...+.+.+..+. ..+..++||+.+-..++.+.+ ..+.. +...+... .+....+.|...+ .. +|+++ ...
T Consensus 378 ~~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~---~~~~~-v~~q~~~~--~~~~~~~~~~~~~-~~-vl~~v~gg~~ 449 (551)
T 3crv_A 378 WKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMS---RISLP-KYVESEDS--SVEDLYSAISANN-KV-LIGSVGKGKL 449 (551)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHT---TCCSS-EEECCSSC--CHHHHHHHTTSSS-SC-EEEEESSCCS
T ss_pred HHHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHH---hcCCc-EEEcCCCC--CHHHHHHHHHhcC-Ce-EEEEEeccee
Confidence 345555555443 345588888888777777765 23333 34444331 2455778885233 33 55554 689
Q ss_pred ccccccc-----cCCEEEEeCCCCC
Q psy13224 117 GVGINLT-----GADTVVFYDSDWN 136 (160)
Q Consensus 117 ~~Gldl~-----~~~~vi~~~~~~~ 136 (160)
.+|+|++ .+..||....|+.
T Consensus 450 ~EGiD~~d~~g~~l~~viI~~lPfp 474 (551)
T 3crv_A 450 AEGIELRNNDRSLISDVVIVGIPYP 474 (551)
T ss_dssp CCSSCCEETTEESEEEEEEESCCCC
T ss_pred cccccccccCCcceeEEEEEcCCCC
Confidence 9999999 3788888887664
No 83
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=91.17 E-value=2.4 Score=29.97 Aligned_cols=95 Identities=15% Similarity=0.072 Sum_probs=60.0
Q ss_pred ccccCchHHH-HHHHHHHHh-------cCCCeEEEEeccHHHHHHHHHHHH----hcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQS-LDVILRKLK-------AGGHRVLIFTQMTRMLDVLEAFLN----FHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~-l~~ll~~~~-------~~~~k~lif~~~~~~~~~l~~~l~----~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
.+++++|... +.-++..+. ..+.++||.+.+.+.+..+.+.++ ..++.+..++|+.+..+....+..
T Consensus 73 apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~- 151 (242)
T 3fe2_A 73 AQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER- 151 (242)
T ss_dssp ECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH-
T ss_pred CCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC-
Confidence 4557899876 444444443 235689999999887666555444 458899999999987765544422
Q ss_pred ccCCCceEEEEeccccc-----cccccccCCEEEEeC
Q psy13224 101 NMDARIFCFILSTRSGG-----VGINLTGADTVVFYD 132 (160)
Q Consensus 101 ~~~~~~~vll~~~~~~~-----~Gldl~~~~~vi~~~ 132 (160)
+..++++++.... ..+++.+...+|+=+
T Consensus 152 ----~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDE 184 (242)
T 3fe2_A 152 ----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDE 184 (242)
T ss_dssp ----CCSEEEECHHHHHHHHHHTSCCCTTCCEEEETT
T ss_pred ----CCCEEEECHHHHHHHHHcCCCCcccccEEEEeC
Confidence 3455666654332 234567777777644
No 84
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=91.01 E-value=1.9 Score=27.01 Aligned_cols=68 Identities=16% Similarity=0.130 Sum_probs=45.7
Q ss_pred HHHHHHHhcCCCeEEEEe------ccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEec
Q psy13224 44 DVILRKLKAGGHRVLIFT------QMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILST 113 (160)
Q Consensus 44 ~~ll~~~~~~~~k~lif~------~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~ 113 (160)
.+.++.+.+ ..+++||+ .++-.+....+.|...|+++..++=...++.+..+..... .....++.+.-
T Consensus 6 ~~~v~~~i~-~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g-~~tvP~ifi~g 79 (111)
T 3zyw_A 6 NLRLKKLTH-AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSS-WPTYPQLYVSG 79 (111)
T ss_dssp HHHHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHT-CCSSCEEEETT
T ss_pred HHHHHHHHh-cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHC-CCCCCEEEECC
Confidence 344555443 45899999 4777899999999999999988877666666665544332 34444455443
No 85
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=90.92 E-value=3 Score=29.19 Aligned_cols=94 Identities=13% Similarity=0.074 Sum_probs=61.0
Q ss_pred ccccCchHHH-HHHHHHHHhc--CCCeEEEEeccHHHHHHHHHHHHhc-----CCeEEEEECCCCHHHHHHHHHHhccCC
Q psy13224 33 IQYDCGKLQS-LDVILRKLKA--GGHRVLIFTQMTRMLDVLEAFLNFH-----GHIYLRLDGTTKVDQRQVLMERFNMDA 104 (160)
Q Consensus 33 ~~~~~~K~~~-l~~ll~~~~~--~~~k~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~~~ 104 (160)
..++++|... +.-++..+.. .+.++||.+.+.+.+..+.+.++.. ++++..++|+.+..++.... .
T Consensus 68 a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~ 141 (230)
T 2oxc_A 68 AKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL------K 141 (230)
T ss_dssp CCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT------T
T ss_pred CCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc------c
Confidence 4557899976 4445555432 3469999999988877777766653 67888999998876544332 2
Q ss_pred CceEEEEeccccc-----cccccccCCEEEEeC
Q psy13224 105 RIFCFILSTRSGG-----VGINLTGADTVVFYD 132 (160)
Q Consensus 105 ~~~vll~~~~~~~-----~Gldl~~~~~vi~~~ 132 (160)
+..++++++.... ..+++.+.+.+|+=+
T Consensus 142 ~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDE 174 (230)
T 2oxc_A 142 KCHIAVGSPGRIKQLIELDYLNPGSIRLFILDE 174 (230)
T ss_dssp SCSEEEECHHHHHHHHHTTSSCGGGCCEEEESS
T ss_pred CCCEEEECHHHHHHHHhcCCcccccCCEEEeCC
Confidence 3456666665432 245566777776644
No 86
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=90.91 E-value=1.5 Score=38.34 Aligned_cols=97 Identities=13% Similarity=0.058 Sum_probs=68.3
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHh----cCC----eEEEEECCCCHHHHHHHHHHhccCC
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNF----HGH----IYLRLDGTTKVDQRQVLMERFNMDA 104 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~----~~~----~~~~~~g~~~~~~r~~~~~~f~~~~ 104 (160)
.+++++|.....-++..+...+.++||.+.+.+.+..+.+.+.. .++ .+..++|+.+..++....+.+..
T Consensus 78 apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-- 155 (1054)
T 1gku_B 78 APTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-- 155 (1054)
T ss_dssp CCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--
T ss_pred cCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--
Confidence 45678999766666666666778999999999876666665553 466 78999999998888777777753
Q ss_pred CceEEEEeccccccccc-cccCCEEEEeC
Q psy13224 105 RIFCFILSTRSGGVGIN-LTGADTVVFYD 132 (160)
Q Consensus 105 ~~~vll~~~~~~~~Gld-l~~~~~vi~~~ 132 (160)
..++++++.....-+. +.+.+.+|+=+
T Consensus 156 -~~IlV~TP~~L~~~l~~L~~l~~lViDE 183 (1054)
T 1gku_B 156 -FKIVITTTQFLSKHYRELGHFDFIFVDD 183 (1054)
T ss_dssp -CSEEEEEHHHHHHCSTTSCCCSEEEESC
T ss_pred -CCEEEEcHHHHHHHHHHhccCCEEEEeC
Confidence 5667777655443333 44666666533
No 87
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=90.80 E-value=1.9 Score=30.09 Aligned_cols=95 Identities=17% Similarity=0.106 Sum_probs=55.8
Q ss_pred ccccCchHHHH-HHHHHHHh--------cCCCeEEEEeccHHHHHHHHHHHHh---cCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSL-DVILRKLK--------AGGHRVLIFTQMTRMLDVLEAFLNF---HGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l-~~ll~~~~--------~~~~k~lif~~~~~~~~~l~~~l~~---~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
..++++|.... .-++..+. ..+.++||.+.+.+.+..+.+.++. .++....++|+.+..++...+
T Consensus 64 apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 140 (228)
T 3iuy_A 64 AQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI--- 140 (228)
T ss_dssp CCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---
T ss_pred CCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---
Confidence 45578998653 33343332 2456899999999988877777776 477888888887755433322
Q ss_pred ccCCCceEEEEeccccc-----cccccccCCEEEEeC
Q psy13224 101 NMDARIFCFILSTRSGG-----VGINLTGADTVVFYD 132 (160)
Q Consensus 101 ~~~~~~~vll~~~~~~~-----~Gldl~~~~~vi~~~ 132 (160)
..+..++++++.... ..+++.+.+.+|+=+
T Consensus 141 --~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDE 175 (228)
T 3iuy_A 141 --SKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDE 175 (228)
T ss_dssp --HSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECC
T ss_pred --cCCCCEEEECHHHHHHHHHcCCcCcccceEEEEEC
Confidence 123455666654332 245567777777644
No 88
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=89.85 E-value=3.6 Score=28.39 Aligned_cols=96 Identities=7% Similarity=0.011 Sum_probs=61.6
Q ss_pred ccccCchHHHHHHHHHHHhcC---CCeEEEEeccHHHHHHHHHHHHhc-----CCeEEEEECCCCHHHHHHHHHHhccCC
Q psy13224 33 IQYDCGKLQSLDVILRKLKAG---GHRVLIFTQMTRMLDVLEAFLNFH-----GHIYLRLDGTTKVDQRQVLMERFNMDA 104 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~---~~k~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~~~ 104 (160)
..++++|.....-.+...... +.++||.+.+.+.+..+.+.++.. ++++..++|+.+..+....+.. .
T Consensus 58 ~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~ 133 (220)
T 1t6n_A 58 AKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK----N 133 (220)
T ss_dssp CCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH----S
T ss_pred CCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc----C
Confidence 445789987655444333222 238999999988877777666653 7889999999887665544432 2
Q ss_pred CceEEEEeccccc-----cccccccCCEEEEeC
Q psy13224 105 RIFCFILSTRSGG-----VGINLTGADTVVFYD 132 (160)
Q Consensus 105 ~~~vll~~~~~~~-----~Gldl~~~~~vi~~~ 132 (160)
...++++++.... ..+++.+.+.+|+=+
T Consensus 134 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 166 (220)
T 1t6n_A 134 CPHIVVGTPGRILALARNKSLNLKHIKHFILDE 166 (220)
T ss_dssp CCSEEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred CCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcC
Confidence 3355666655332 345667778887755
No 89
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=89.25 E-value=5.6 Score=29.78 Aligned_cols=96 Identities=9% Similarity=0.072 Sum_probs=61.5
Q ss_pred ccccCchHHHHHHHHH-HHhc--CCCeEEEEeccHHHHHHHHHHHHhc-----CCeEEEEECCCCHHHHHHHHHHhccCC
Q psy13224 33 IQYDCGKLQSLDVILR-KLKA--GGHRVLIFTQMTRMLDVLEAFLNFH-----GHIYLRLDGTTKVDQRQVLMERFNMDA 104 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~-~~~~--~~~k~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~~~ 104 (160)
.+++++|.....-.+. .+.. .+.++||.+.+...+..+.+.+... ++.+..++|+.+..+....+.. .
T Consensus 52 a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~ 127 (391)
T 1xti_A 52 AKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK----N 127 (391)
T ss_dssp CSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHH----S
T ss_pred CCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhc----C
Confidence 4557899976544443 3222 2458999999988877776666653 7889999999887665544432 2
Q ss_pred CceEEEEeccccc-----cccccccCCEEEEeC
Q psy13224 105 RIFCFILSTRSGG-----VGINLTGADTVVFYD 132 (160)
Q Consensus 105 ~~~vll~~~~~~~-----~Gldl~~~~~vi~~~ 132 (160)
...++++++.... ..+++.+.+.+|+=+
T Consensus 128 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDE 160 (391)
T 1xti_A 128 CPHIVVGTPGRILALARNKSLNLKHIKHFILDE 160 (391)
T ss_dssp CCSEEEECHHHHHHHHHTTSSCCTTCSEEEECS
T ss_pred CCCEEEECHHHHHHHHHcCCccccccCEEEEeC
Confidence 3455666665442 334566777777644
No 90
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=89.21 E-value=4.2 Score=28.37 Aligned_cols=94 Identities=15% Similarity=0.095 Sum_probs=56.2
Q ss_pred ccccCchHHHHHH-HHHHHh------cCCCeEEEEeccHHHHHHHHHHHHhc----CCeEEEEECCCCHHHHHHHHHHhc
Q psy13224 33 IQYDCGKLQSLDV-ILRKLK------AGGHRVLIFTQMTRMLDVLEAFLNFH----GHIYLRLDGTTKVDQRQVLMERFN 101 (160)
Q Consensus 33 ~~~~~~K~~~l~~-ll~~~~------~~~~k~lif~~~~~~~~~l~~~l~~~----~~~~~~~~g~~~~~~r~~~~~~f~ 101 (160)
..++++|.....- ++..+. ..+.++||.+.+.+.+....+.+... ++.+..++|+.+..+.....
T Consensus 69 a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---- 144 (236)
T 2pl3_A 69 AKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI---- 144 (236)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH----
T ss_pred eCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC----
Confidence 4457899986433 333332 23568999999988777776666653 57888888887755443332
Q ss_pred cCCCceEEEEeccccc----c--ccccccCCEEEEeC
Q psy13224 102 MDARIFCFILSTRSGG----V--GINLTGADTVVFYD 132 (160)
Q Consensus 102 ~~~~~~vll~~~~~~~----~--Gldl~~~~~vi~~~ 132 (160)
.+..++++++.... . .+++.+...+|+=+
T Consensus 145 --~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 179 (236)
T 2pl3_A 145 --NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDE 179 (236)
T ss_dssp --TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETT
T ss_pred --CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeC
Confidence 23455666665432 1 34556676666633
No 91
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=89.14 E-value=0.82 Score=36.17 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=58.1
Q ss_pred ccccCchHHHHHHHHHHHhcC-----CCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHHHhccC
Q psy13224 33 IQYDCGKLQSLDVILRKLKAG-----GHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLMERFNMD 103 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~-----~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~ 103 (160)
.+++++|.....-.+...... +.++||.+.+...+....+.+.. .++.+..++|+.+...+......
T Consensus 26 ~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---- 101 (555)
T 3tbk_A 26 APTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIE---- 101 (555)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHH----
T ss_pred eCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhc----
Confidence 455789998755555443332 66899999987766555554444 48999999999876554322211
Q ss_pred CCceEEEEeccccccc-----c-ccccCCEEEEeC
Q psy13224 104 ARIFCFILSTRSGGVG-----I-NLTGADTVVFYD 132 (160)
Q Consensus 104 ~~~~vll~~~~~~~~G-----l-dl~~~~~vi~~~ 132 (160)
+..++++++.....- + .+.+.+.+|+=+
T Consensus 102 -~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDE 135 (555)
T 3tbk_A 102 -DNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDE 135 (555)
T ss_dssp -HCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETT
T ss_pred -CCCEEEECHHHHHHHHhcCcccccccCCEEEEEC
Confidence 234566666544322 2 445666666643
No 92
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=88.71 E-value=3.2 Score=26.35 Aligned_cols=69 Identities=10% Similarity=0.056 Sum_probs=45.7
Q ss_pred HHHHHHHhcCCCeEEEEec------cHHHHHHHHHHHHhcCCe---EEEEECCCCHHHHHHHHHHhccCCCceEEEEecc
Q psy13224 44 DVILRKLKAGGHRVLIFTQ------MTRMLDVLEAFLNFHGHI---YLRLDGTTKVDQRQVLMERFNMDARIFCFILSTR 114 (160)
Q Consensus 44 ~~ll~~~~~~~~k~lif~~------~~~~~~~l~~~l~~~~~~---~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~ 114 (160)
.+.++.+.. ..+++||+. ++-.+....+.|...|+. +..++-...++.+..+..... ......+.+.-.
T Consensus 6 ~~~v~~~i~-~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg-~~tvP~vfI~g~ 83 (121)
T 3gx8_A 6 RKAIEDAIE-SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSE-WPTIPQLYVNKE 83 (121)
T ss_dssp HHHHHHHHH-SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHT-CCSSCEEEETTE
T ss_pred HHHHHHHhc-cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhC-CCCCCeEEECCE
Confidence 344444443 358999998 577899999999999988 777777666666665544432 344444555433
No 93
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=88.65 E-value=1.3 Score=37.45 Aligned_cols=95 Identities=8% Similarity=0.043 Sum_probs=55.9
Q ss_pred ccccCchHHHHHHHHHHHhcC-----CCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHHHhccC
Q psy13224 33 IQYDCGKLQSLDVILRKLKAG-----GHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLMERFNMD 103 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~-----~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~ 103 (160)
.+++++|.....-.+...... +.++||.+.+...+....+.++. .++.+..++|+.+...+.....
T Consensus 270 ~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----- 344 (797)
T 4a2q_A 270 APTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----- 344 (797)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH-----
T ss_pred eCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh-----
Confidence 445789998766665444333 67999999988776665555544 4899999999987655332221
Q ss_pred CCceEEEEeccccccc-----c-ccccCCEEEEeC
Q psy13224 104 ARIFCFILSTRSGGVG-----I-NLTGADTVVFYD 132 (160)
Q Consensus 104 ~~~~vll~~~~~~~~G-----l-dl~~~~~vi~~~ 132 (160)
.+..++++++.....- + .+.+.+.+|+=+
T Consensus 345 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDE 379 (797)
T 4a2q_A 345 EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDE 379 (797)
T ss_dssp HTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETT
T ss_pred CCCCEEEEchHHHHHHHHhccccccccCCEEEEEC
Confidence 2345666666544322 2 445566666543
No 94
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=88.59 E-value=2.7 Score=26.65 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=42.0
Q ss_pred CeEEEEec------cHHHHHHHHHHHHhcCCe-EEEEECCCCHHHHHHHHHHhccCCCceEEEEecc
Q psy13224 55 HRVLIFTQ------MTRMLDVLEAFLNFHGHI-YLRLDGTTKVDQRQVLMERFNMDARIFCFILSTR 114 (160)
Q Consensus 55 ~k~lif~~------~~~~~~~l~~~l~~~~~~-~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~ 114 (160)
.+++||+. ++-.+....+.|...+++ +..++=...++.+..+..... .....++++.-.
T Consensus 20 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg-~~tvP~vfI~g~ 85 (118)
T 2wem_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSN-WPTIPQVYLNGE 85 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHT-CCSSCEEEETTE
T ss_pred CCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhC-CCCcCeEEECCE
Confidence 48999998 588899999999999995 888887777666665544332 344555555433
No 95
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=88.54 E-value=1.1 Score=28.51 Aligned_cols=50 Identities=16% Similarity=0.152 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCC-CeEEEEec-cHHHHHHHHHHHHhcCCeEEEEECCCCHH
Q psy13224 41 QSLDVILRKLKAGG-HRVLIFTQ-MTRMLDVLEAFLNFHGHIYLRLDGTTKVD 91 (160)
Q Consensus 41 ~~l~~ll~~~~~~~-~k~lif~~-~~~~~~~l~~~l~~~~~~~~~~~g~~~~~ 91 (160)
..+.+.+..+ ..+ +++++||. .-.........|...|+++..+.|+...-
T Consensus 76 ~~~~~~~~~~-~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~W 127 (134)
T 3g5j_A 76 KDIYLQAAEL-ALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKAY 127 (134)
T ss_dssp HHHHHHHHHH-HTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHHH
T ss_pred HHHHHHHHHh-ccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHHH
Confidence 4444455444 345 79999994 55566778888999999988999987643
No 96
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=87.76 E-value=1 Score=35.64 Aligned_cols=95 Identities=8% Similarity=0.043 Sum_probs=55.5
Q ss_pred ccccCchHHHHHHHHHHHhcC-----CCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHHHhccC
Q psy13224 33 IQYDCGKLQSLDVILRKLKAG-----GHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLMERFNMD 103 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~-----~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~ 103 (160)
.+++++|.....-.+...... +.++||.+.+...+....+.+.. .++.+..++|+.+..++.....
T Consensus 29 ~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----- 103 (556)
T 4a2p_A 29 APTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----- 103 (556)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH-----
T ss_pred cCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh-----
Confidence 455789998755555443332 56899999988766655555544 4899999999887654332221
Q ss_pred CCceEEEEeccccccc-----c-ccccCCEEEEeC
Q psy13224 104 ARIFCFILSTRSGGVG-----I-NLTGADTVVFYD 132 (160)
Q Consensus 104 ~~~~vll~~~~~~~~G-----l-dl~~~~~vi~~~ 132 (160)
.+..++++++.....- + .+.+.+.+|+=+
T Consensus 104 ~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDE 138 (556)
T 4a2p_A 104 EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDE 138 (556)
T ss_dssp HHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEET
T ss_pred CCCCEEEECHHHHHHHHHhCcccccccCCEEEEEC
Confidence 1234566666554321 2 455667777654
No 97
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=87.68 E-value=3.9 Score=27.76 Aligned_cols=95 Identities=13% Similarity=0.078 Sum_probs=59.6
Q ss_pred ccccCchHHH-HHHHHHHHh-----cCCCeEEEEeccHHHHHHHHHHHHhc--CCeEEEEECCCCHHHHHHHHHHhccCC
Q psy13224 33 IQYDCGKLQS-LDVILRKLK-----AGGHRVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDGTTKVDQRQVLMERFNMDA 104 (160)
Q Consensus 33 ~~~~~~K~~~-l~~ll~~~~-----~~~~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~ 104 (160)
.+++++|... +.-++..+. ..+.+++|.+.+...+..+.+.+... .+.+..++|+.+..+....+. .
T Consensus 45 ~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 119 (207)
T 2gxq_A 45 ARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL-----R 119 (207)
T ss_dssp CCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH-----H
T ss_pred CCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh-----C
Confidence 4567899987 444455443 23568999999988887777777764 467888888877654433332 1
Q ss_pred CceEEEEeccccc-----cccccccCCEEEEeC
Q psy13224 105 RIFCFILSTRSGG-----VGINLTGADTVVFYD 132 (160)
Q Consensus 105 ~~~vll~~~~~~~-----~Gldl~~~~~vi~~~ 132 (160)
+..++++++.... ..+++.+.+.+|+=+
T Consensus 120 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE 152 (207)
T 2gxq_A 120 GADAVVATPGRALDYLRQGVLDLSRVEVAVLDE 152 (207)
T ss_dssp CCSEEEECHHHHHHHHHHTSSCCTTCSEEEEES
T ss_pred CCCEEEECHHHHHHHHHcCCcchhhceEEEEEC
Confidence 3445666554322 234566777777644
No 98
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=87.44 E-value=3.6 Score=25.44 Aligned_cols=68 Identities=18% Similarity=0.119 Sum_probs=46.4
Q ss_pred HHHHHHHhcCCCeEEEEec------cHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEec
Q psy13224 44 DVILRKLKAGGHRVLIFTQ------MTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILST 113 (160)
Q Consensus 44 ~~ll~~~~~~~~k~lif~~------~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~ 113 (160)
.+.++.+.. ..+++||+. ++-.+....+.|...|+.+..++=...++.+..+..... ......+++.-
T Consensus 8 ~~~v~~~i~-~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g-~~tvP~ifi~g 81 (109)
T 3ipz_A 8 KDTLEKLVN-SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSN-WPTFPQLYIGG 81 (109)
T ss_dssp HHHHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHT-CSSSCEEEETT
T ss_pred HHHHHHHHc-cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHC-CCCCCeEEECC
Confidence 445555444 458999998 588899999999999999988876666665655554432 33444455543
No 99
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=87.40 E-value=4.8 Score=28.88 Aligned_cols=95 Identities=16% Similarity=0.136 Sum_probs=58.3
Q ss_pred ccccCchHHH-HHHHHHHHhc------CCCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHHHhc
Q psy13224 33 IQYDCGKLQS-LDVILRKLKA------GGHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLMERFN 101 (160)
Q Consensus 33 ~~~~~~K~~~-l~~ll~~~~~------~~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~~f~ 101 (160)
..++++|... +.-++..+.. .+.++||.+.+.+.+....+.++. .+..+..+.|+....+....+.
T Consensus 98 a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--- 174 (262)
T 3ly5_A 98 AKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLG--- 174 (262)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHH---
T ss_pred ccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhc---
Confidence 4457899876 3444444332 466899999998877666666654 4677888889887655443331
Q ss_pred cCCCceEEEEecccc------ccccccccCCEEEEeC
Q psy13224 102 MDARIFCFILSTRSG------GVGINLTGADTVVFYD 132 (160)
Q Consensus 102 ~~~~~~vll~~~~~~------~~Gldl~~~~~vi~~~ 132 (160)
.+..++++++... ..++++.+...+|+=+
T Consensus 175 --~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDE 209 (262)
T 3ly5_A 175 --NGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDE 209 (262)
T ss_dssp --HCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECS
T ss_pred --CCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcC
Confidence 1245555554322 1245677777777643
No 100
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=86.96 E-value=7.2 Score=30.16 Aligned_cols=95 Identities=17% Similarity=0.040 Sum_probs=61.0
Q ss_pred ccccCchHHH-HHHHHHHHhcC-------CCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQS-LDVILRKLKAG-------GHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~-l~~ll~~~~~~-------~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
..++++|... +.-++..+... +.++||.+.+.+.+..+.+.+.. .++.+..++|+.+..+....+
T Consensus 100 a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l--- 176 (434)
T 2db3_A 100 AQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI--- 176 (434)
T ss_dssp CCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH---
T ss_pred CCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh---
Confidence 4457899985 34455544332 45899999999887777766664 367788899998876544332
Q ss_pred ccCCCceEEEEeccccc-----cccccccCCEEEEeC
Q psy13224 101 NMDARIFCFILSTRSGG-----VGINLTGADTVVFYD 132 (160)
Q Consensus 101 ~~~~~~~vll~~~~~~~-----~Gldl~~~~~vi~~~ 132 (160)
..+..++++++.... ..+++.+.+.+|+=+
T Consensus 177 --~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDE 211 (434)
T 2db3_A 177 --TRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDE 211 (434)
T ss_dssp --TTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEET
T ss_pred --hcCCCEEEEChHHHHHHHHhCCcccccCCeEEEcc
Confidence 234566666654432 234566777777754
No 101
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=86.46 E-value=3.1 Score=33.30 Aligned_cols=80 Identities=13% Similarity=0.110 Sum_probs=58.3
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS 112 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~ 112 (160)
.+++++|..... +-.+. .+.++||.+.....+....+.|...|+.+..++|..+..++........ .+...+++++
T Consensus 47 apTGsGKTl~~~--lp~l~-~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~-~~~~~ilv~T 122 (523)
T 1oyw_A 47 MPTGGGKSLCYQ--IPALL-LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCR-TGQIRLLYIA 122 (523)
T ss_dssp CSCHHHHHHHHH--HHHHH-SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH-HTCCSEEEEC
T ss_pred CCCCcHHHHHHH--HHHHH-hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh-cCCCCEEEEC
Confidence 455678986422 21122 3468999999999888888889989999999999999888877777665 3445667777
Q ss_pred cccc
Q psy13224 113 TRSG 116 (160)
Q Consensus 113 ~~~~ 116 (160)
+...
T Consensus 123 pe~l 126 (523)
T 1oyw_A 123 PERL 126 (523)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 102
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=85.12 E-value=4.1 Score=28.11 Aligned_cols=94 Identities=7% Similarity=0.009 Sum_probs=54.1
Q ss_pred ccccCchHHH-HHHHHHHHhc--CCCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHHHhccCCC
Q psy13224 33 IQYDCGKLQS-LDVILRKLKA--GGHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLMERFNMDAR 105 (160)
Q Consensus 33 ~~~~~~K~~~-l~~ll~~~~~--~~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 105 (160)
.+++++|... +.-++..+.. .+.++||.+.+...+..+.+.+.. .++.+..++|+.+..+... .+. .
T Consensus 58 ~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~---~ 131 (224)
T 1qde_A 58 AQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GLR---D 131 (224)
T ss_dssp CCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT---T
T ss_pred CCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cCC---C
Confidence 4557899977 5555555432 345899999998877766666654 3778888888877544332 221 2
Q ss_pred ceEEEEecccc-----ccccccccCCEEEEeC
Q psy13224 106 IFCFILSTRSG-----GVGINLTGADTVVFYD 132 (160)
Q Consensus 106 ~~vll~~~~~~-----~~Gldl~~~~~vi~~~ 132 (160)
..++++++... ...+++.+...+|+=+
T Consensus 132 ~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDE 163 (224)
T 1qde_A 132 AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 163 (224)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred CCEEEECHHHHHHHHHhCCcchhhCcEEEEcC
Confidence 45666665543 2344556677777644
No 103
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=84.85 E-value=4.8 Score=24.46 Aligned_cols=65 Identities=20% Similarity=0.121 Sum_probs=44.3
Q ss_pred HHHHHHhcCCCeEEEEe------ccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEE
Q psy13224 45 VILRKLKAGGHRVLIFT------QMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFIL 111 (160)
Q Consensus 45 ~ll~~~~~~~~k~lif~------~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~ 111 (160)
+.++.+... .+++||+ .++..+......|...++.+..++-...+..+..+...+. ......+++
T Consensus 8 ~~~~~~i~~-~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g-~~~vP~v~i 78 (105)
T 2yan_A 8 ERLKVLTNK-ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSN-WPTYPQLYV 78 (105)
T ss_dssp HHHHHHHTS-SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHT-CCSSCEEEE
T ss_pred HHHHHHhcc-CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHC-CCCCCeEEE
Confidence 344444443 4788888 5777899999999999999988888777666666655553 233333443
No 104
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=84.69 E-value=4.5 Score=24.01 Aligned_cols=72 Identities=15% Similarity=0.268 Sum_probs=49.6
Q ss_pred cCCCCccccccCchHHHHHHHHHHHhcCCCeEEEEecc--HHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 26 QFPDPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQM--TRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 26 ~~~~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~--~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
++|..++-... --.-+.++++..+..|+.++||.+- ...+..+...-++.|..|-++.+..+ ++-.+-+..|
T Consensus 25 nypgryirtat--ssqdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlkstdp-eeltqrvref 98 (112)
T 2lnd_A 25 NYPGRYIRTAT--SSQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDP-EELTQRVREF 98 (112)
T ss_dssp HSCTTTEEEEC--SHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCH-HHHHHHHHHH
T ss_pred CCCCceeeecc--chhhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCH-HHHHHHHHHH
Confidence 45555543322 2345678999988899999999974 44577788888888999988876555 4444444455
No 105
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=83.81 E-value=12 Score=28.12 Aligned_cols=95 Identities=12% Similarity=0.153 Sum_probs=58.3
Q ss_pred ccccCchHHHHHHHH-HHHhc--CCCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHHHhccCCC
Q psy13224 33 IQYDCGKLQSLDVIL-RKLKA--GGHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLMERFNMDAR 105 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll-~~~~~--~~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 105 (160)
.+++++|.......+ ..+.. .+.+++|.+.+...+....+.+.. .++.+..++|+....+... .. ...
T Consensus 65 a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~--~~~ 139 (400)
T 1s2m_A 65 AKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL---RL--NET 139 (400)
T ss_dssp CCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHH---HT--TSC
T ss_pred CCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHH---Hh--cCC
Confidence 445789997644433 33322 345899999998877666665554 3788888888887554322 22 344
Q ss_pred ceEEEEecccc-----ccccccccCCEEEEeC
Q psy13224 106 IFCFILSTRSG-----GVGINLTGADTVVFYD 132 (160)
Q Consensus 106 ~~vll~~~~~~-----~~Gldl~~~~~vi~~~ 132 (160)
..++++++... ....++.+.+.+|+=+
T Consensus 140 ~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 140 VHILVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp CSEEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred CCEEEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 55666665432 2234566777777754
No 106
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=83.48 E-value=7.1 Score=25.33 Aligned_cols=57 Identities=14% Similarity=0.072 Sum_probs=41.6
Q ss_pred CeEEEEec------cHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe
Q psy13224 55 HRVLIFTQ------MTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS 112 (160)
Q Consensus 55 ~k~lif~~------~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~ 112 (160)
.+++||+. ++..+......|...++++..++=...++.+..+..... .....++++.
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G-~~tvP~VfI~ 97 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYAN-WPTFPQLWVD 97 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHT-CCSSCEEEET
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHC-CCCcCEEEEC
Confidence 37888977 677899999999999999988888777666666655443 3344445544
No 107
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=83.15 E-value=1.5 Score=27.05 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCH
Q psy13224 43 LDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKV 90 (160)
Q Consensus 43 l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~ 90 (160)
+.+.+..+ ..++++++||..-.........|...|+++..+.|+...
T Consensus 45 l~~~~~~l-~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 45 LREKWKIL-ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp HHHHGGGS-CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred HHHHHHhC-CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 33444332 446799999998777788889999999998899887663
No 108
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=82.99 E-value=2.8 Score=29.00 Aligned_cols=95 Identities=16% Similarity=0.097 Sum_probs=56.0
Q ss_pred ccccCchHHH-HHHHHHHHhc--CCCeEEEEeccHHHHHHHHHHHHhc--------CCeEEEEECCCCHHHHHHHHHHhc
Q psy13224 33 IQYDCGKLQS-LDVILRKLKA--GGHRVLIFTQMTRMLDVLEAFLNFH--------GHIYLRLDGTTKVDQRQVLMERFN 101 (160)
Q Consensus 33 ~~~~~~K~~~-l~~ll~~~~~--~~~k~lif~~~~~~~~~l~~~l~~~--------~~~~~~~~g~~~~~~r~~~~~~f~ 101 (160)
..++++|... +.-++..+.. .+.+++|.+.+.+.+..+.+.++.. ++.+..+.|+.+..+.. ..+
T Consensus 48 a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~- 123 (219)
T 1q0u_A 48 SQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL- 123 (219)
T ss_dssp CCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-
T ss_pred CCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-
Confidence 4557889887 3444444332 2458999999988776666655442 67788888887643221 111
Q ss_pred cCCCceEEEEeccccc-----cccccccCCEEEEeC
Q psy13224 102 MDARIFCFILSTRSGG-----VGINLTGADTVVFYD 132 (160)
Q Consensus 102 ~~~~~~vll~~~~~~~-----~Gldl~~~~~vi~~~ 132 (160)
..+..++++++.... ..+++...+.+|+=+
T Consensus 124 -~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDE 158 (219)
T 1q0u_A 124 -NVQPHIVIGTPGRINDFIREQALDVHTAHILVVDE 158 (219)
T ss_dssp -SSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECS
T ss_pred -CCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcC
Confidence 234456666654332 234566777776643
No 109
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=82.74 E-value=10 Score=26.66 Aligned_cols=95 Identities=12% Similarity=0.016 Sum_probs=58.2
Q ss_pred ccccCchHHHH-HHHHHHHhc-----------CCCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHH
Q psy13224 33 IQYDCGKLQSL-DVILRKLKA-----------GGHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVL 96 (160)
Q Consensus 33 ~~~~~~K~~~l-~~ll~~~~~-----------~~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~ 96 (160)
..++++|.... .-++..+.. .+.++||.+.+.+.+..+.+.+.. .++.+..++|+.+..+....
T Consensus 67 a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 146 (253)
T 1wrb_A 67 AQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE 146 (253)
T ss_dssp CCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH
Confidence 34678998753 334444332 124899999998877666655554 36778888888776543332
Q ss_pred HHHhccCCCceEEEEeccccc-----cccccccCCEEEEeC
Q psy13224 97 MERFNMDARIFCFILSTRSGG-----VGINLTGADTVVFYD 132 (160)
Q Consensus 97 ~~~f~~~~~~~vll~~~~~~~-----~Gldl~~~~~vi~~~ 132 (160)
. ..+..++++++.... ..+++.+...+|+=+
T Consensus 147 ---~--~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDE 182 (253)
T 1wrb_A 147 ---V--QMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDE 182 (253)
T ss_dssp ---H--SSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEET
T ss_pred ---h--CCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeC
Confidence 2 234566776665443 234566777777644
No 110
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=82.50 E-value=14 Score=27.90 Aligned_cols=95 Identities=13% Similarity=0.028 Sum_probs=58.7
Q ss_pred ccccCchHHH-HHHHHHHHhcC--------------------CCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECC
Q psy13224 33 IQYDCGKLQS-LDVILRKLKAG--------------------GHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGT 87 (160)
Q Consensus 33 ~~~~~~K~~~-l~~ll~~~~~~--------------------~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~ 87 (160)
.+++++|... +.-++..+... +.++||.+.+.+.+..+.+.+.. .++.+..++|+
T Consensus 59 a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~ 138 (417)
T 2i4i_A 59 AQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGG 138 (417)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSS
T ss_pred cCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECC
Confidence 4557899974 44445444321 24799999998877666666553 47888999999
Q ss_pred CCHHHHHHHHHHhccCCCceEEEEeccccc-----cccccccCCEEEEeC
Q psy13224 88 TKVDQRQVLMERFNMDARIFCFILSTRSGG-----VGINLTGADTVVFYD 132 (160)
Q Consensus 88 ~~~~~r~~~~~~f~~~~~~~vll~~~~~~~-----~Gldl~~~~~vi~~~ 132 (160)
.+..+... .. ..+..++++++.... ..+++.+.+.+|+=+
T Consensus 139 ~~~~~~~~---~~--~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDE 183 (417)
T 2i4i_A 139 ADIGQQIR---DL--ERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDE 183 (417)
T ss_dssp SCHHHHHH---HH--TTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESS
T ss_pred CCHHHHHH---Hh--hCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEC
Confidence 88665433 23 234556776665432 224556677666643
No 111
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=81.76 E-value=8.3 Score=31.43 Aligned_cols=81 Identities=9% Similarity=0.084 Sum_probs=60.2
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhcc-CCCceEEEE
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNM-DARIFCFIL 111 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~-~~~~~vll~ 111 (160)
.+++++|.....-.. + ..+.++||.+.....+....+.|...|+.+..++|+.+..++......... .+...++++
T Consensus 66 ~pTGsGKTl~~~lpa--l-~~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~ 142 (591)
T 2v1x_A 66 MPTGGGKSLCYQLPA--L-CSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYV 142 (591)
T ss_dssp CCTTSCTTHHHHHHH--H-TSSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEE
T ss_pred ECCCChHHHHHHHHH--H-HcCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEE
Confidence 556789987532222 2 235699999999998888888888889999999999999988887777642 355677777
Q ss_pred ecccc
Q psy13224 112 STRSG 116 (160)
Q Consensus 112 ~~~~~ 116 (160)
++...
T Consensus 143 Tpe~L 147 (591)
T 2v1x_A 143 TPEKI 147 (591)
T ss_dssp CHHHH
T ss_pred ChhHh
Confidence 77543
No 112
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=81.39 E-value=4.1 Score=33.47 Aligned_cols=51 Identities=24% Similarity=0.211 Sum_probs=45.4
Q ss_pred ccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEE
Q psy13224 35 YDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLD 85 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~ 85 (160)
.+++|...+.+++..+...+.++|+-+.+...++.+.+.|...+.+++.+.
T Consensus 214 PGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG 264 (646)
T 4b3f_X 214 PGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLG 264 (646)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEECS
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEec
Confidence 468999999999999988999999999999999999999988888876664
No 113
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=79.94 E-value=6.2 Score=31.04 Aligned_cols=92 Identities=8% Similarity=0.044 Sum_probs=60.4
Q ss_pred ccccCchHHHHHHHHHHHhcCCC-eEEEEeccHHHHHHHHHHHHhc----CCeEEEEECCCCHHHHHHHHHHhccCCCce
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGH-RVLIFTQMTRMLDVLEAFLNFH----GHIYLRLDGTTKVDQRQVLMERFNMDARIF 107 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~-k~lif~~~~~~~~~l~~~l~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~ 107 (160)
..++++|......++......++ ++||.+.....+....+.++.. +..+..++|+.+..++ . .+...
T Consensus 135 ~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~--~~~~~ 206 (510)
T 2oca_A 135 LPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK------Y--KNDAP 206 (510)
T ss_dssp CCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG------G--CTTCS
T ss_pred eCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc------c--ccCCc
Confidence 44568999987777765544444 9999999988777777777654 2467788888776543 1 34566
Q ss_pred EEEEeccccccc--cccccCCEEEEeC
Q psy13224 108 CFILSTRSGGVG--INLTGADTVVFYD 132 (160)
Q Consensus 108 vll~~~~~~~~G--ldl~~~~~vi~~~ 132 (160)
++++++...... ..+.+...||+=+
T Consensus 207 I~i~T~~~l~~~~~~~~~~~~liIiDE 233 (510)
T 2oca_A 207 VVVGTWQTVVKQPKEWFSQFGMMMNDE 233 (510)
T ss_dssp EEEEEHHHHTTSCGGGGGGEEEEEEET
T ss_pred EEEEeHHHHhhchhhhhhcCCEEEEEC
Confidence 777777665443 3345566665543
No 114
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=79.55 E-value=12 Score=25.26 Aligned_cols=95 Identities=12% Similarity=0.126 Sum_probs=58.5
Q ss_pred ccccCchHHHHH-HHHHHHhc--CCCeEEEEeccHHHHHHHHHHHHhc-----CCeEEEEECCCCHHHHHHHHHHhccCC
Q psy13224 33 IQYDCGKLQSLD-VILRKLKA--GGHRVLIFTQMTRMLDVLEAFLNFH-----GHIYLRLDGTTKVDQRQVLMERFNMDA 104 (160)
Q Consensus 33 ~~~~~~K~~~l~-~ll~~~~~--~~~k~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~~~ 104 (160)
.+++++|..... -++..+.. .+.++++.+.+...+..+.+.+... +..+..++|+.+..+... .. ..
T Consensus 47 apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~--~~ 121 (206)
T 1vec_A 47 AKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL--DD 121 (206)
T ss_dssp CCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT--TS
T ss_pred CCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc--CC
Confidence 445789997544 34443322 2458999999988777666666542 678888999887654332 22 34
Q ss_pred CceEEEEeccccc-----cccccccCCEEEEeC
Q psy13224 105 RIFCFILSTRSGG-----VGINLTGADTVVFYD 132 (160)
Q Consensus 105 ~~~vll~~~~~~~-----~Gldl~~~~~vi~~~ 132 (160)
+..++++++.... ..+++.+.+.+|+=+
T Consensus 122 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 154 (206)
T 1vec_A 122 TVHVVIATPGRILDLIKKGVAKVDHVQMIVLDE 154 (206)
T ss_dssp CCSEEEECHHHHHHHHHTTCSCCTTCCEEEEET
T ss_pred CCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEC
Confidence 4566776665432 223556777777754
No 115
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=79.50 E-value=7 Score=22.62 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=31.5
Q ss_pred HHHHHHHH-hcCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCC
Q psy13224 43 LDVILRKL-KAGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTK 89 (160)
Q Consensus 43 l~~ll~~~-~~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~ 89 (160)
+.+.+..+ ...+.++++||..-.........|...|++ +..+ |+..
T Consensus 29 l~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 29 VKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp HHHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred HHHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 44455554 244678999999877777888889988986 4444 6543
No 116
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=78.72 E-value=2.7 Score=36.27 Aligned_cols=95 Identities=8% Similarity=0.043 Sum_probs=55.1
Q ss_pred ccccCchHHHHHHHHHHHhcC-----CCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHHHhccC
Q psy13224 33 IQYDCGKLQSLDVILRKLKAG-----GHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLMERFNMD 103 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~-----~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~ 103 (160)
..+++||.....-.+...... +.++||.+.+...+....+.++. .++.+..++|+.+...+.....
T Consensus 270 a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----- 344 (936)
T 4a2w_A 270 APTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----- 344 (936)
T ss_dssp CCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH-----
T ss_pred eCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc-----
Confidence 445789998766666544333 66899999988766555554444 4899999999987554322221
Q ss_pred CCceEEEEeccccccc-----c-ccccCCEEEEeC
Q psy13224 104 ARIFCFILSTRSGGVG-----I-NLTGADTVVFYD 132 (160)
Q Consensus 104 ~~~~vll~~~~~~~~G-----l-dl~~~~~vi~~~ 132 (160)
.+..++++++.....- + .+.+.+.+|+=+
T Consensus 345 ~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDE 379 (936)
T 4a2w_A 345 EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDE 379 (936)
T ss_dssp HHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEET
T ss_pred cCCCEEEecHHHHHHHHHcCccccccCCCEEEEEC
Confidence 1234566665544321 2 345667776644
No 117
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=78.66 E-value=3 Score=25.21 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=31.5
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCC
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTK 89 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~ 89 (160)
..++++++||..-.........|...|+++..+.|+..
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 34679999999887788888999999998888888754
No 118
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=78.05 E-value=1.1 Score=36.80 Aligned_cols=95 Identities=12% Similarity=0.119 Sum_probs=58.1
Q ss_pred ccccCchHHHHHHHHHHHhcC------CCeEEEEeccHHHHHHH-HHHHHhc---CCeEEEEECCCCHHHHHHHHHHhcc
Q psy13224 33 IQYDCGKLQSLDVILRKLKAG------GHRVLIFTQMTRMLDVL-EAFLNFH---GHIYLRLDGTTKVDQRQVLMERFNM 102 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~------~~k~lif~~~~~~~~~l-~~~l~~~---~~~~~~~~g~~~~~~r~~~~~~f~~ 102 (160)
.+++++|.......+...... +.++||.+.....+... .+.|+.. ++.+..++|+.+..++.....
T Consensus 29 ~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~---- 104 (699)
T 4gl2_A 29 LPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV---- 104 (699)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----
T ss_pred cCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----
Confidence 456789988766665443222 26899999988766555 6666553 388999999887654433221
Q ss_pred CCCceEEEEeccccccc-----------cccccCCEEEEeC
Q psy13224 103 DARIFCFILSTRSGGVG-----------INLTGADTVVFYD 132 (160)
Q Consensus 103 ~~~~~vll~~~~~~~~G-----------ldl~~~~~vi~~~ 132 (160)
....++++++.....- +.+.+.+.+|+=+
T Consensus 105 -~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDE 144 (699)
T 4gl2_A 105 -KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDE 144 (699)
T ss_dssp -HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEES
T ss_pred -cCCCEEEECHHHHHHHHhccccccccceecccCcEEEEEC
Confidence 2456677777655432 4567788887755
No 119
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=78.00 E-value=4.4 Score=24.74 Aligned_cols=40 Identities=10% Similarity=0.084 Sum_probs=31.6
Q ss_pred hcCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCCH
Q psy13224 51 KAGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTKV 90 (160)
Q Consensus 51 ~~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~ 90 (160)
...+..+++||..-.........|...|+. +..+.|+...
T Consensus 49 l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 49 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 89 (106)
T ss_dssp SCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHH
T ss_pred CCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHH
Confidence 345678999999887788888999999995 7778777653
No 120
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=77.83 E-value=12 Score=27.80 Aligned_cols=94 Identities=7% Similarity=-0.015 Sum_probs=58.0
Q ss_pred ccccCchHHH-HHHHHHHHhc--CCCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHHHhccCCC
Q psy13224 33 IQYDCGKLQS-LDVILRKLKA--GGHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLMERFNMDAR 105 (160)
Q Consensus 33 ~~~~~~K~~~-l~~ll~~~~~--~~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 105 (160)
.+++++|... +.-++..+.. .+.++||.+.+...+....+.+.. .++.+..++|+.+..+...... .
T Consensus 65 ~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~ 138 (394)
T 1fuu_A 65 AQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR------D 138 (394)
T ss_dssp CCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH------H
T ss_pred CCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC------C
Confidence 4456899976 4444444332 345999999998877666665554 4788899999988766554443 2
Q ss_pred ceEEEEeccccc-----cccccccCCEEEEeC
Q psy13224 106 IFCFILSTRSGG-----VGINLTGADTVVFYD 132 (160)
Q Consensus 106 ~~vll~~~~~~~-----~Gldl~~~~~vi~~~ 132 (160)
..++++++.... ..+++.+.+.+|+=+
T Consensus 139 ~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDE 170 (394)
T 1fuu_A 139 AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 170 (394)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred CCEEEECHHHHHHHHHhCCcchhhCcEEEEEC
Confidence 345665554432 223345666666644
No 121
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=77.22 E-value=9 Score=27.59 Aligned_cols=92 Identities=8% Similarity=0.013 Sum_probs=55.3
Q ss_pred ccccCchHHHHHHHHHHHhcCC-CeEEEEeccHHHHHHHHHHHHhcC----CeEEEEECCCCHHHHHHHHHHhccCCCce
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGG-HRVLIFTQMTRMLDVLEAFLNFHG----HIYLRLDGTTKVDQRQVLMERFNMDARIF 107 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~-~k~lif~~~~~~~~~l~~~l~~~~----~~~~~~~g~~~~~~r~~~~~~f~~~~~~~ 107 (160)
..++++|......++......+ .++|+.+.....+....+.++..+ ..+..+.|+.+..+ .......
T Consensus 135 ~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 206 (282)
T 1rif_A 135 LPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD--------KYKNDAP 206 (282)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT--------CCCTTCS
T ss_pred cCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh--------hhccCCc
Confidence 4557899988777766554444 499999998887776666666543 24566666654332 1124456
Q ss_pred EEEEecccccccc--ccccCCEEEEeC
Q psy13224 108 CFILSTRSGGVGI--NLTGADTVVFYD 132 (160)
Q Consensus 108 vll~~~~~~~~Gl--dl~~~~~vi~~~ 132 (160)
+++++++....-. .+.+.+.+|+=+
T Consensus 207 I~v~T~~~l~~~~~~~~~~~~~vIiDE 233 (282)
T 1rif_A 207 VVVGTWQTVVKQPKEWFSQFGMMMNDE 233 (282)
T ss_dssp EEEECHHHHTTSCGGGGGGEEEEEEET
T ss_pred EEEEchHHHHhhHHHHHhhCCEEEEEC
Confidence 6777666544332 234555555533
No 122
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=77.21 E-value=19 Score=26.37 Aligned_cols=94 Identities=12% Similarity=0.100 Sum_probs=58.9
Q ss_pred ccccCchHHHHHHHHHHHhc--CCCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHHHhccCCCc
Q psy13224 33 IQYDCGKLQSLDVILRKLKA--GGHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLMERFNMDARI 106 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~--~~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~ 106 (160)
.+++++|.......+..... .+.+++|.+.+...+..+.+.+.. .++.+..++|+....+...... ..
T Consensus 51 ~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~ 124 (367)
T 1hv8_A 51 ARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK------NA 124 (367)
T ss_dssp CCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH------TC
T ss_pred CCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC------CC
Confidence 45678999876555544433 356999999988876666666654 4778888888887655433332 23
Q ss_pred eEEEEecccccc-----ccccccCCEEEEeC
Q psy13224 107 FCFILSTRSGGV-----GINLTGADTVVFYD 132 (160)
Q Consensus 107 ~vll~~~~~~~~-----Gldl~~~~~vi~~~ 132 (160)
.+++++++.... .+++.+.+.+|+=+
T Consensus 125 ~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 155 (367)
T 1hv8_A 125 NIVVGTPGRILDHINRGTLNLKNVKYFILDE 155 (367)
T ss_dssp SEEEECHHHHHHHHHTTCSCTTSCCEEEEET
T ss_pred CEEEecHHHHHHHHHcCCcccccCCEEEEeC
Confidence 456666554321 23455666666644
No 123
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=76.59 E-value=2.9 Score=25.36 Aligned_cols=38 Identities=11% Similarity=0.057 Sum_probs=31.2
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCC
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTK 89 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~ 89 (160)
..++++++||..-.........|...|+++..+.|+..
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 34678999999877778888899999998888888754
No 124
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=76.48 E-value=4.8 Score=24.58 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCCHH
Q psy13224 42 SLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTKVD 91 (160)
Q Consensus 42 ~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~~ 91 (160)
.+.+.+.. ...++++++||..-.........|...|+. +..+.|+...-
T Consensus 47 ~l~~~~~~-l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W 96 (108)
T 1gmx_A 47 TLGAFMRD-NDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW 96 (108)
T ss_dssp HHHHHHHH-SCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHHH
T ss_pred HHHHHHHh-cCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHHH
Confidence 34445554 345679999999877777888889999995 77888876543
No 125
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=76.30 E-value=7.7 Score=31.79 Aligned_cols=95 Identities=17% Similarity=0.145 Sum_probs=58.4
Q ss_pred ccccCchHHHHHHHHHHHh-cC----CCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHHHhccC
Q psy13224 33 IQYDCGKLQSLDVILRKLK-AG----GHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLMERFNMD 103 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~-~~----~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~ 103 (160)
.++++||.......+.... .. +.++||.+.+...+....+.++. .++.+..++|+.+...+...+.
T Consensus 35 ~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----- 109 (696)
T 2ykg_A 35 APTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----- 109 (696)
T ss_dssp CCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH-----
T ss_pred cCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc-----
Confidence 5567899987665554332 22 26899999987765555555544 3889999999886543222221
Q ss_pred CCceEEEEecccccc----c-c-ccccCCEEEEeC
Q psy13224 104 ARIFCFILSTRSGGV----G-I-NLTGADTVVFYD 132 (160)
Q Consensus 104 ~~~~vll~~~~~~~~----G-l-dl~~~~~vi~~~ 132 (160)
....++++++..... | + ++.+.+.+|+=+
T Consensus 110 ~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDE 144 (696)
T 2ykg_A 110 ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 144 (696)
T ss_dssp HTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEET
T ss_pred cCCCEEEECHHHHHHHHhcCcccccccccEEEEeC
Confidence 134567777665432 2 2 466777887755
No 126
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=76.09 E-value=10 Score=22.74 Aligned_cols=46 Identities=13% Similarity=0.015 Sum_probs=36.3
Q ss_pred CeEEEEecc-HHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 55 HRVLIFTQM-TRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 55 ~k~lif~~~-~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
.++.||+.. +-.+....+.|++.|+++..++=...++.+....+.-
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~ 50 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVN 50 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHS
T ss_pred CcEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHc
Confidence 367888754 3468889999999999999999988888777666543
No 127
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=75.50 E-value=5.1 Score=26.64 Aligned_cols=38 Identities=24% Similarity=0.094 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHH
Q psy13224 38 GKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLN 75 (160)
Q Consensus 38 ~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~ 75 (160)
.+.....+|+++....|.+++|.|...+.++.|-+.|=
T Consensus 23 ~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW 60 (150)
T 3sxu_A 23 AVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALW 60 (150)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHh
Confidence 48888999999999999999999999998888888874
No 128
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=75.35 E-value=5 Score=27.27 Aligned_cols=95 Identities=11% Similarity=0.097 Sum_probs=52.8
Q ss_pred ccccCchHHHHHHHHHHHhc------CCCeEEEEeccHHHHHH-HHHHHHh---cCCeEEEEECCCCHHHHHHHHHHhcc
Q psy13224 33 IQYDCGKLQSLDVILRKLKA------GGHRVLIFTQMTRMLDV-LEAFLNF---HGHIYLRLDGTTKVDQRQVLMERFNM 102 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~------~~~k~lif~~~~~~~~~-l~~~l~~---~~~~~~~~~g~~~~~~r~~~~~~f~~ 102 (160)
..++++|.......+..... .+.+++|.+.....++. +.+.+.. .++.+..++|+.....+.....
T Consensus 55 ~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---- 130 (216)
T 3b6e_A 55 LPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV---- 130 (216)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----
T ss_pred cCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----
Confidence 34467898876666654321 25699999998776555 4444443 3678888888765433222111
Q ss_pred CCCceEEEEecccccc-----------ccccccCCEEEEeC
Q psy13224 103 DARIFCFILSTRSGGV-----------GINLTGADTVVFYD 132 (160)
Q Consensus 103 ~~~~~vll~~~~~~~~-----------Gldl~~~~~vi~~~ 132 (160)
....++++++..... ++.+.+.+.+|+=+
T Consensus 131 -~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDE 170 (216)
T 3b6e_A 131 -KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDE 170 (216)
T ss_dssp -HHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETT
T ss_pred -cCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEEC
Confidence 123456666654421 24556667776644
No 129
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=74.56 E-value=25 Score=26.43 Aligned_cols=95 Identities=11% Similarity=0.026 Sum_probs=58.2
Q ss_pred ccccCchHHHHHHHHHHHh---cCCCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHHHhccCCC
Q psy13224 33 IQYDCGKLQSLDVILRKLK---AGGHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLMERFNMDAR 105 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~---~~~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 105 (160)
..++++|.....-.+.... ..+.++||.+.+.+.+..+.+.+.. .++.+..+.|+.+..+....+. .+
T Consensus 81 a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~ 155 (410)
T 2j0s_A 81 SQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD-----YG 155 (410)
T ss_dssp CCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH-----HC
T ss_pred CCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh-----cC
Confidence 4557899976554443332 2456999999998877777766654 3677888889888765444332 12
Q ss_pred ceEEEEecccc----c-cccccccCCEEEEeC
Q psy13224 106 IFCFILSTRSG----G-VGINLTGADTVVFYD 132 (160)
Q Consensus 106 ~~vll~~~~~~----~-~Gldl~~~~~vi~~~ 132 (160)
..++++++... . ..+++...+.+|+=+
T Consensus 156 ~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDE 187 (410)
T 2j0s_A 156 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDE 187 (410)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred CCEEEcCHHHHHHHHHhCCccHhheeEEEEcc
Confidence 34555554322 1 234555677776644
No 130
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=74.43 E-value=3.6 Score=25.29 Aligned_cols=38 Identities=11% Similarity=0.057 Sum_probs=30.4
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCC
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTK 89 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~ 89 (160)
..++++++||..-.........|...|++.+.+.|+..
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 34679999998877677788899999999888877654
No 131
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=73.48 E-value=6.9 Score=27.42 Aligned_cols=94 Identities=18% Similarity=0.193 Sum_probs=56.1
Q ss_pred ccccCchHHH-HHHHHHHHhc---CCCeEEEEeccHHHHHHHHHHHHhc----CCeEEEEECCCCHHHHHHHHHHhc--c
Q psy13224 33 IQYDCGKLQS-LDVILRKLKA---GGHRVLIFTQMTRMLDVLEAFLNFH----GHIYLRLDGTTKVDQRQVLMERFN--M 102 (160)
Q Consensus 33 ~~~~~~K~~~-l~~ll~~~~~---~~~k~lif~~~~~~~~~l~~~l~~~----~~~~~~~~g~~~~~~r~~~~~~f~--~ 102 (160)
..++++|... +.-++..+.. .+.++||.+.+.+.+..+.+.+... ++.+..++|+.... ..+. .
T Consensus 73 a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 146 (245)
T 3dkp_A 73 APTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA------KKFGPKS 146 (245)
T ss_dssp CCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH------TTTSTTS
T ss_pred CCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH------HHhhhhh
Confidence 3457899876 4445555433 3458999999998877777766653 66666655543221 1121 1
Q ss_pred CCCceEEEEeccccc-------cccccccCCEEEEeC
Q psy13224 103 DARIFCFILSTRSGG-------VGINLTGADTVVFYD 132 (160)
Q Consensus 103 ~~~~~vll~~~~~~~-------~Gldl~~~~~vi~~~ 132 (160)
..+..++++++.... .++++.+...+|+=+
T Consensus 147 ~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDE 183 (245)
T 3dkp_A 147 SKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDE 183 (245)
T ss_dssp CCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESS
T ss_pred cCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeC
Confidence 234556666654331 246777888877744
No 132
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=72.81 E-value=3.9 Score=24.34 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=29.2
Q ss_pred CeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCC
Q psy13224 55 HRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTK 89 (160)
Q Consensus 55 ~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~ 89 (160)
+++++||..-.........|...|+.+..+.|+..
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999877777888889999998777888765
No 133
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=71.55 E-value=13 Score=21.84 Aligned_cols=88 Identities=10% Similarity=0.088 Sum_probs=42.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccC---CCceEEEEeccccccccccc--cCCE
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMD---ARIFCFILSTRSGGVGINLT--GADT 127 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~---~~~~vll~~~~~~~~Gldl~--~~~~ 127 (160)
.|..+..+.+..+.. ..+....+..++++...+...-...+...+.. +...+++++...-.. ... ++..
T Consensus 24 ~g~~v~~~~~~~~~~----~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~--~~~~~g~~~ 97 (119)
T 2j48_A 24 AGFKVIWLVDGSTAL----DQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD--PLLTAQASA 97 (119)
T ss_dssp TTCEEEEESCHHHHH----HHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS--HHHHHHCSE
T ss_pred CCcEEEEecCHHHHH----HHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch--hhhhcCHHH
Confidence 455665544433322 33444567778887766543334444444322 344555555432222 211 3333
Q ss_pred EEEeCCCCCcChhhHHHHHHH
Q psy13224 128 VVFYDSDWNPTMDAQAQDRCH 148 (160)
Q Consensus 128 vi~~~~~~~~~~~~Q~~gR~~ 148 (160)
++.-|.++..+.+++.++.
T Consensus 98 --~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 98 --ILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp --ECSSCSTTHHHHHHHHTTC
T ss_pred --hccCCCCHHHHHHHHHHHh
Confidence 3344666666666665543
No 134
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=71.33 E-value=17 Score=23.05 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCCCeEEEEec------cHHHHHHHHHHHHhcCC-eEEEEECCCCHHHHHHHHHHhccCCCceEEEEec
Q psy13224 41 QSLDVILRKLKAGGHRVLIFTQ------MTRMLDVLEAFLNFHGH-IYLRLDGTTKVDQRQVLMERFNMDARIFCFILST 113 (160)
Q Consensus 41 ~~l~~ll~~~~~~~~k~lif~~------~~~~~~~l~~~l~~~~~-~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~ 113 (160)
+.+.++++ ..+|+||+. .+..+....+.|...++ .+..++-...++-|..+...- ..+....+++.-
T Consensus 11 e~i~~~i~-----~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~s-g~~TvPqIFI~g 84 (118)
T 2wul_A 11 EQLDALVK-----KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYS-NWPTIPQVYLNG 84 (118)
T ss_dssp HHHHHHHH-----HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHH-TCCSSCEEEETT
T ss_pred HHHHHHHh-----cCCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHHhc-cCCCCCeEeECC
Confidence 34555554 249999975 36678888888998887 577787777766666554443 344444455543
Q ss_pred c
Q psy13224 114 R 114 (160)
Q Consensus 114 ~ 114 (160)
.
T Consensus 85 ~ 85 (118)
T 2wul_A 85 E 85 (118)
T ss_dssp E
T ss_pred E
Confidence 3
No 135
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=71.04 E-value=6.5 Score=25.56 Aligned_cols=38 Identities=11% Similarity=-0.032 Sum_probs=31.1
Q ss_pred CCCeEEEEeccH--HHHHHHHHHHHhcCCeEEEEECCCCH
Q psy13224 53 GGHRVLIFTQMT--RMLDVLEAFLNFHGHIYLRLDGTTKV 90 (160)
Q Consensus 53 ~~~k~lif~~~~--~~~~~l~~~l~~~~~~~~~~~g~~~~ 90 (160)
.+.++++||..- .........|...|+++..+.|+...
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~~ 110 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEY 110 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHHH
Confidence 456899999976 45677888899999999999998764
No 136
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=69.59 E-value=22 Score=25.99 Aligned_cols=91 Identities=11% Similarity=0.027 Sum_probs=57.2
Q ss_pred cccCchHHH-HHHHHHHHhcCC--CeEEEEeccHHHHHHHHHHHHhc-----CCeEEEEECCCCHHHHHHHHHHhccCCC
Q psy13224 34 QYDCGKLQS-LDVILRKLKAGG--HRVLIFTQMTRMLDVLEAFLNFH-----GHIYLRLDGTTKVDQRQVLMERFNMDAR 105 (160)
Q Consensus 34 ~~~~~K~~~-l~~ll~~~~~~~--~k~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 105 (160)
.++++|... +.-++..+...+ .++||.+.+.+.+..+.+.+... ++.+....|+.+..... ...
T Consensus 139 ~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~ 210 (300)
T 3fmo_B 139 QSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ--------KIS 210 (300)
T ss_dssp CTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC--------CCC
T ss_pred CCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh--------cCC
Confidence 467899876 446666554332 37999999999877766666542 56777777766532211 233
Q ss_pred ceEEEEecccc-----c-cccccccCCEEEEeC
Q psy13224 106 IFCFILSTRSG-----G-VGINLTGADTVVFYD 132 (160)
Q Consensus 106 ~~vll~~~~~~-----~-~Gldl~~~~~vi~~~ 132 (160)
..++++++... . ..+++.++..+|+=+
T Consensus 211 ~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDE 243 (300)
T 3fmo_B 211 EQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 243 (300)
T ss_dssp CSEEEECHHHHHHHHTTTCCCCGGGCSEEEETT
T ss_pred CCEEEECHHHHHHHHHhcCCCChhhceEEEEeC
Confidence 45666665543 2 356778888888754
No 137
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=69.15 E-value=14 Score=28.65 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=42.3
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCC
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTK 89 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~ 89 (160)
..++++|......++... +.++||.+.....+....+.+..-+.. +..++|+.+
T Consensus 115 ~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~ 169 (472)
T 2fwr_A 115 LPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK 169 (472)
T ss_dssp CCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCB
T ss_pred eCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcC
Confidence 445689999877777654 679999999988877777777777888 888888764
No 138
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=68.84 E-value=32 Score=25.32 Aligned_cols=67 Identities=9% Similarity=-0.099 Sum_probs=51.9
Q ss_pred cccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
+..|-|.+....++....+.+.+.||=+..-++...++......|+++.++-....+..+...+..|
T Consensus 33 ptgS~K~R~a~~~l~~a~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~ 99 (318)
T 2rkb_A 33 PSGSFKIRGIGHFCQEMAKKGCRHLVCSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGE 99 (318)
T ss_dssp TTSBTTHHHHHHHHHHHHHTTCCEEEECCCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhc
Confidence 3467899999888888766676666666667888888888888899988877666666777777777
No 139
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=68.74 E-value=20 Score=28.24 Aligned_cols=85 Identities=12% Similarity=-0.037 Sum_probs=59.4
Q ss_pred CeEEEEeccHHHHHHHHHHHHhc--CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeC
Q psy13224 55 HRVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYD 132 (160)
Q Consensus 55 ~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~ 132 (160)
.++=+++++-.....+...+... |++.++-.|+...-.-...++.|.+++..+++++..+..+
T Consensus 150 G~v~~vsqSG~~~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~d~l~~~~~D~~t~~I~l~~E~i~--------------- 214 (457)
T 2csu_A 150 GNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMADVDFAELMEYLADTEEDKAIALYIEGVR--------------- 214 (457)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHTTCEESEEEECTTCCSSCHHHHHHHHTTCSSCCEEEEEESCCS---------------
T ss_pred CCEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCCcCCCCHHHHHHHHhcCCCCCEEEEEEecCC---------------
Confidence 35667888888888888888877 4555666676666667889999998888888887755432
Q ss_pred CCCCcChhhHHHHHHHhcCCCCceEEeC
Q psy13224 133 SDWNPTMDAQAQDRCHRIGQTRDVHIYR 160 (160)
Q Consensus 133 ~~~~~~~~~Q~~gR~~R~gq~~~v~i~r 160 (160)
++..+..+..++. .+|+|.+|+
T Consensus 215 ---~~~~f~~~a~~~~---~~KPVv~~k 236 (457)
T 2csu_A 215 ---NGKKFMEVAKRVT---KKKPIIALK 236 (457)
T ss_dssp ---CHHHHHHHHHHHH---HHSCEEEEE
T ss_pred ---CHHHHHHHHHHhc---CCCCEEEEE
Confidence 3445666666653 367777663
No 140
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=68.29 E-value=16 Score=21.58 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhcCCC--eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhcc
Q psy13224 40 LQSLDVILRKLKAGGH--RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNM 102 (160)
Q Consensus 40 ~~~l~~ll~~~~~~~~--k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~ 102 (160)
.+.|.+.+++...+.. +++|..+..+.++.-.+.-....+.+. -.--.++.+-..+++.|..
T Consensus 35 edelkkyleefrkesqnikvlilvsndeeldkakelaqkmeidvr-trkvtspdeakrwikefse 98 (110)
T 2kpo_A 35 EDELKKYLEEFRKESQNIKVLILVSNDEELDKAKELAQKMEIDVR-TRKVTSPDEAKRWIKEFSE 98 (110)
T ss_dssp HHHHHHHHHHHTSSTTSEEEEEEESSHHHHHHHHHHHHHTTCCEE-EEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCeEEEEEEcChHHHHHHHHHHHhhceeee-eeecCChHHHHHHHHHHhh
Confidence 4567778887765543 899999888888777776666666643 3334677888899999964
No 141
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=68.18 E-value=27 Score=24.23 Aligned_cols=96 Identities=13% Similarity=0.119 Sum_probs=51.2
Q ss_pred ccccCchHHHH-HHHHHHHhc--CCCeEEEEeccHHHHHHHHHHHHhc----CCeEEEEECCCCHHHHHHHHHHhccCCC
Q psy13224 33 IQYDCGKLQSL-DVILRKLKA--GGHRVLIFTQMTRMLDVLEAFLNFH----GHIYLRLDGTTKVDQRQVLMERFNMDAR 105 (160)
Q Consensus 33 ~~~~~~K~~~l-~~ll~~~~~--~~~k~lif~~~~~~~~~l~~~l~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 105 (160)
..++++|.... .-++..+.. .+.++||.+.+.+.+..+.+.++.. ++.+..+.|+.+..+.. .... .+.
T Consensus 74 apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~-~~~ 149 (237)
T 3bor_A 74 AQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEM---QKLQ-AEA 149 (237)
T ss_dssp CCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-----------------CC
T ss_pred CCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHH---HHHh-cCC
Confidence 34568899764 334443322 3459999999988877777666643 56777777776543322 2221 222
Q ss_pred ceEEEEeccc----cc-cccccccCCEEEEeC
Q psy13224 106 IFCFILSTRS----GG-VGINLTGADTVVFYD 132 (160)
Q Consensus 106 ~~vll~~~~~----~~-~Gldl~~~~~vi~~~ 132 (160)
..++++++.. .. ..+++.....+|+=+
T Consensus 150 ~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDE 181 (237)
T 3bor_A 150 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 181 (237)
T ss_dssp CSEEEECHHHHHHHHHTTSSCSTTCCEEEEES
T ss_pred CCEEEECHHHHHHHHHhCCcCcccCcEEEECC
Confidence 4556655432 22 235566777777644
No 142
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=68.00 E-value=8.6 Score=24.94 Aligned_cols=38 Identities=5% Similarity=-0.123 Sum_probs=29.1
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCC
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTK 89 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~ 89 (160)
..+.++++||..-.........|...|+. +..+.|+..
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 34578999999876667788889999995 888888875
No 143
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=67.59 E-value=6.4 Score=25.11 Aligned_cols=39 Identities=5% Similarity=-0.004 Sum_probs=31.5
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCCH
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTKV 90 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~ 90 (160)
..+.++++||..-.........|...|+. +..+.|+...
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 123 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGA 123 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHHH
Confidence 45679999999877777788889999996 8888887653
No 144
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=67.58 E-value=7.9 Score=25.08 Aligned_cols=38 Identities=11% Similarity=0.106 Sum_probs=30.4
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCC
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTK 89 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~ 89 (160)
..+..+++||............|...|+. +..+.|+..
T Consensus 54 ~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 54 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 45678999999877778888899999986 667777755
No 145
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=67.28 E-value=16 Score=29.80 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=42.9
Q ss_pred cCchHHHHHHHHHHHhc-CCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEEC
Q psy13224 36 DCGKLQSLDVILRKLKA-GGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDG 86 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~-~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g 86 (160)
+++|...+.+++..+.. .+.++++-+.+...++.+.+.+...+++++.+.+
T Consensus 205 GTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~R~~~ 256 (624)
T 2gk6_A 205 GTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCA 256 (624)
T ss_dssp TSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCEEECCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeEEeecc
Confidence 57899999999988765 5779999999999999999999888877666544
No 146
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=67.27 E-value=35 Score=25.13 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=45.5
Q ss_pred eEEEEeccHHHHHHHHHHHHhc--CCeEEEEECCCC--HHHHHHHHHHhccCCCceEEEEeccccc
Q psy13224 56 RVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDGTTK--VDQRQVLMERFNMDARIFCFILSTRSGG 117 (160)
Q Consensus 56 k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~--~~~r~~~~~~f~~~~~~~vll~~~~~~~ 117 (160)
++=+++++-.....+...+... |++.++-.|+.. .-.-...++.|.+++..+++++..+..+
T Consensus 153 ~va~vSqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~~~ 218 (297)
T 2yv2_A 153 GVAVVSRSGTLTYEISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGEIGG 218 (297)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEECSSS
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCC
Confidence 5667888888888888888776 555556666555 2356779999998888888888766543
No 147
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=66.90 E-value=35 Score=25.00 Aligned_cols=62 Identities=23% Similarity=0.141 Sum_probs=45.9
Q ss_pred eEEEEeccHHHHHHHHHHHHhc--CCeEEEEECCCC--HHHHHHHHHHhccCCCceEEEEeccccc
Q psy13224 56 RVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDGTTK--VDQRQVLMERFNMDARIFCFILSTRSGG 117 (160)
Q Consensus 56 k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~--~~~r~~~~~~f~~~~~~~vll~~~~~~~ 117 (160)
++=+++++-.....+...+... |++.++-.|... .-.-...++.|.+++..+++++.....+
T Consensus 146 ~va~vsqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~t~~I~l~~E~~~ 211 (288)
T 1oi7_A 146 RVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIGG 211 (288)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEECSSS
T ss_pred CEEEEECCHHHHHHHHHHHHhCCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCC
Confidence 5778888888888888888876 555555556555 3366779999998888988888766544
No 148
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=66.55 E-value=4.3 Score=25.60 Aligned_cols=39 Identities=10% Similarity=0.001 Sum_probs=30.6
Q ss_pred cCCCeEEEEeccHHH--HHHHHHHHHhcCCeEEEEECCCCH
Q psy13224 52 AGGHRVLIFTQMTRM--LDVLEAFLNFHGHIYLRLDGTTKV 90 (160)
Q Consensus 52 ~~~~k~lif~~~~~~--~~~l~~~l~~~~~~~~~~~g~~~~ 90 (160)
..++++++||..-.. .......|...|+++..+.|+...
T Consensus 69 ~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~~ 109 (124)
T 3flh_A 69 DPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEG 109 (124)
T ss_dssp CTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHHH
Confidence 346689999987665 677888899999998888887653
No 149
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=66.12 E-value=49 Score=26.45 Aligned_cols=96 Identities=17% Similarity=0.050 Sum_probs=56.0
Q ss_pred ccccCchHHH-HHHHHHHHhcC------CCeEEEEeccHHHHHHHHHHHHh--------cCCeEEEEECCCCHHHHHHHH
Q psy13224 33 IQYDCGKLQS-LDVILRKLKAG------GHRVLIFTQMTRMLDVLEAFLNF--------HGHIYLRLDGTTKVDQRQVLM 97 (160)
Q Consensus 33 ~~~~~~K~~~-l~~ll~~~~~~------~~k~lif~~~~~~~~~l~~~l~~--------~~~~~~~~~g~~~~~~r~~~~ 97 (160)
.+++++|... +.-++..+... +.++||.+.+.+.+..+.+.+.. ..+.+..+.|+.........+
T Consensus 67 apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l 146 (579)
T 3sqw_A 67 AKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKM 146 (579)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHH
Confidence 3567899985 33333333222 24899999998877666666654 245677788877755443333
Q ss_pred HHhccCCCceEEEEecccccc------ccccccCCEEEEeC
Q psy13224 98 ERFNMDARIFCFILSTRSGGV------GINLTGADTVVFYD 132 (160)
Q Consensus 98 ~~f~~~~~~~vll~~~~~~~~------Gldl~~~~~vi~~~ 132 (160)
... ...++++++...-. ...+.....+|+=+
T Consensus 147 ~~~----~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDE 183 (579)
T 3sqw_A 147 NKL----RPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDE 183 (579)
T ss_dssp HHH----CCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEET
T ss_pred hcC----CCCEEEECHHHHHHHHHhccccccccCCEEEEEC
Confidence 222 34556666554321 33456677776644
No 150
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=65.87 E-value=10 Score=23.25 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=30.9
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCC
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTK 89 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~ 89 (160)
..+.++++||..-.........|...|+.-..+.|+..
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 45678999999877777888899999986578888876
No 151
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=65.30 E-value=7.5 Score=24.63 Aligned_cols=39 Identities=10% Similarity=-0.042 Sum_probs=31.2
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCCH
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTKV 90 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~ 90 (160)
..++++++||..-.........|...|+. +..+.|+...
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 119 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSA 119 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 45679999999877777788888888985 7789998764
No 152
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=64.69 E-value=37 Score=24.46 Aligned_cols=91 Identities=11% Similarity=0.086 Sum_probs=58.7
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHHHhccCCCceE
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLMERFNMDARIFC 108 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~v 108 (160)
.+++++|.......+.. .+.+++|.+.....+....+.+.. .+..+..++|+.+..+... .+. ...+
T Consensus 38 ~~TGsGKT~~~~~~~~~---~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~i 108 (337)
T 2z0m_A 38 AKTGSGKTAAYAIPILE---LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQIN---RVR---NADI 108 (337)
T ss_dssp CCTTSSHHHHHHHHHHH---HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHH---HHT---TCSE
T ss_pred cCCCCcHHHHHHHHHHh---hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHh---hcC---CCCE
Confidence 45578999875555432 367999999998877777766664 3678888999888665433 232 2455
Q ss_pred EEEeccccc-----cccccccCCEEEEeC
Q psy13224 109 FILSTRSGG-----VGINLTGADTVVFYD 132 (160)
Q Consensus 109 ll~~~~~~~-----~Gldl~~~~~vi~~~ 132 (160)
++++++... ..+++...+.+|+=+
T Consensus 109 ~v~T~~~l~~~~~~~~~~~~~~~~iViDE 137 (337)
T 2z0m_A 109 VVATPGRLLDLWSKGVIDLSSFEIVIIDE 137 (337)
T ss_dssp EEECHHHHHHHHHTTSCCGGGCSEEEEES
T ss_pred EEECHHHHHHHHHcCCcchhhCcEEEEEC
Confidence 666655432 223556677777644
No 153
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=63.61 E-value=43 Score=24.85 Aligned_cols=76 Identities=11% Similarity=0.024 Sum_probs=56.0
Q ss_pred ccccCchHHHHHHHHHHHhcCCC----eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceE
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGH----RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFC 108 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~----k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~v 108 (160)
....|-|.+....++....+.|. +.+|=+..-++...++..-...|+++.++-....+..+...+..| . -.+
T Consensus 47 ~ptGSfK~R~a~~~l~~a~~~g~l~~~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~--G--A~V 122 (325)
T 3dwg_A 47 NPTGSIKDRPAVRMIEQAEADGLLRPGATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELY--G--AQI 122 (325)
T ss_dssp STTSBTTHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHH--T--CEE
T ss_pred CCCCChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHC--C--CEE
Confidence 34567899999999988776654 555556667888888888888899988777766667788888888 2 344
Q ss_pred EEEe
Q psy13224 109 FILS 112 (160)
Q Consensus 109 ll~~ 112 (160)
+++.
T Consensus 123 ~~~~ 126 (325)
T 3dwg_A 123 IFSA 126 (325)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 5554
No 154
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=62.73 E-value=23 Score=21.37 Aligned_cols=104 Identities=8% Similarity=-0.069 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhcc---CCCceEEEEeccccc
Q psy13224 41 QSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNM---DARIFCFILSTRSGG 117 (160)
Q Consensus 41 ~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~---~~~~~vll~~~~~~~ 117 (160)
..+..+++ ..|..+..+.+..+ ..+.+....+..++++-..+..+-...+...+. .....+++++...-.
T Consensus 17 ~~l~~~L~---~~g~~v~~~~~~~~----a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~ 89 (127)
T 3i42_A 17 ETFKELLE---MLGFQADYVMSGTD----ALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKN 89 (127)
T ss_dssp HHHHHHHH---HTTEEEEEESSHHH----HHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CT
T ss_pred HHHHHHHH---HcCCCEEEECCHHH----HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcch
Confidence 34444444 23555555544333 334455667888888877766555555555543 244556665543322
Q ss_pred ccccc--ccCCEEEEeCCCCCcChhhHHHHHHHhcCCC
Q psy13224 118 VGINL--TGADTVVFYDSDWNPTMDAQAQDRCHRIGQT 153 (160)
Q Consensus 118 ~Gldl--~~~~~vi~~~~~~~~~~~~Q~~gR~~R~gq~ 153 (160)
.-... .+++. ++.-|.++..+.+++.+.++-+..
T Consensus 90 ~~~~~~~~g~~~--~l~KP~~~~~L~~~i~~~~~~~~~ 125 (127)
T 3i42_A 90 DLGKEACELFDF--YLEKPIDIASLEPILQSIEGHHHH 125 (127)
T ss_dssp TCCHHHHHHCSE--EEESSCCHHHHHHHHHHHC-----
T ss_pred hHHHHHHHhhHH--heeCCCCHHHHHHHHHHhhccCCC
Confidence 11211 13333 445678888888888888776543
No 155
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Probab=62.72 E-value=48 Score=25.16 Aligned_cols=68 Identities=6% Similarity=-0.116 Sum_probs=53.1
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
....|-|.+....++..+.+.+.+.||=+..-++...++......|+++.++-....+..+...+..|
T Consensus 71 ~ptGSfKdRga~~~l~~a~~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~ 138 (372)
T 1p5j_A 71 QPSGSFKIRGIGHFCKRWAKQGCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNE 138 (372)
T ss_dssp SGGGBTTHHHHHHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhc
Confidence 34678899999888887766666666666667888888888888899988877766667777778777
No 156
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=62.08 E-value=49 Score=25.01 Aligned_cols=68 Identities=6% Similarity=-0.120 Sum_probs=51.2
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
....|-|.+.+..++....+.+.+.||=+..-++...++..-...|+++.++-....+..+...+..|
T Consensus 71 ~ptGSfK~Rga~~~i~~a~~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~ 138 (364)
T 4h27_A 71 QPSGSFKIRGIGHFCKRWAKQGCAHFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNE 138 (364)
T ss_dssp STTSBTHHHHHHHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCEEEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHc
Confidence 34567899988888888777776666666667788888888888899987776665666677777666
No 157
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=62.03 E-value=6.2 Score=34.22 Aligned_cols=82 Identities=18% Similarity=0.094 Sum_probs=53.4
Q ss_pred cccCchHHHHHHHHHHHhcCCC--eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEE
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGH--RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFIL 111 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~--k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~ 111 (160)
..+++|......++..+...+. ++||.+...-...|..++.+.-++++..++|+.....+...... -....++++
T Consensus 178 ~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~Qw~~E~~~~f~l~v~v~~~~~~~~~~~~~~~~---~~~~dIvI~ 254 (968)
T 3dmq_A 178 EVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNP---FDTEQLVIC 254 (968)
T ss_dssp CTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHHHHHHHHHHHSCCCCEECCHHHHHHHHHTTCSS---STTCSEEEE
T ss_pred CCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCHHHHHHHHHHHHHHhCCCEEEEccchhhhhhhhcccc---cccCCEEEE
Confidence 4678999888888877765554 99999998656666666667778888888765432211111111 134567777
Q ss_pred ecccccc
Q psy13224 112 STRSGGV 118 (160)
Q Consensus 112 ~~~~~~~ 118 (160)
+.+....
T Consensus 255 T~~~L~~ 261 (968)
T 3dmq_A 255 SLDFARR 261 (968)
T ss_dssp CHHHHHT
T ss_pred cHHHHhh
Confidence 7776643
No 158
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=61.77 E-value=7.7 Score=24.93 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=31.2
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCC-eEEEEECCCCH
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGH-IYLRLDGTTKV 90 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~-~~~~~~g~~~~ 90 (160)
..++++++||..-.........|...|+ ++..+.|+...
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~ 119 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDK 119 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHH
Confidence 4467999999987777778888888999 47888888763
No 159
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=61.33 E-value=46 Score=24.44 Aligned_cols=62 Identities=11% Similarity=0.065 Sum_probs=45.2
Q ss_pred eEEEEeccHHHHHHHHHHHHhc--CCeEEEEECCCC--HHHHHHHHHHhccCCCceEEEEeccccc
Q psy13224 56 RVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDGTTK--VDQRQVLMERFNMDARIFCFILSTRSGG 117 (160)
Q Consensus 56 k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~--~~~r~~~~~~f~~~~~~~vll~~~~~~~ 117 (160)
++=+++++-.....+...+... |++.++-.|+.. .-.-..+++.|.+++..+++++..+..+
T Consensus 152 ~va~vSqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~~g 217 (294)
T 2yv1_A 152 SVGMVSRSGTLTYEIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGEIGG 217 (294)
T ss_dssp EEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEESSS
T ss_pred CEEEEECCHHHHHHHHHHHHhCCCCeEEEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEeeCC
Confidence 5667778777777888888876 555555556554 3356779999998888888888866553
No 160
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=60.92 E-value=11 Score=27.08 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=34.7
Q ss_pred HHHHHHHHHHH-hcCCCeEEEEeccHHH-HHHHHHHHHhcCC-eEEEEECCC
Q psy13224 40 LQSLDVILRKL-KAGGHRVLIFTQMTRM-LDVLEAFLNFHGH-IYLRLDGTT 88 (160)
Q Consensus 40 ~~~l~~ll~~~-~~~~~k~lif~~~~~~-~~~l~~~l~~~~~-~~~~~~g~~ 88 (160)
...+.+.+..+ ...+..++|||..-.. .......|...|+ ++..++|+.
T Consensus 71 ~~~~~~~~~~~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~ 122 (280)
T 1urh_A 71 PETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGL 122 (280)
T ss_dssp HHHHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHH
T ss_pred HHHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCH
Confidence 45566677665 3456789999987554 6677788888898 477787743
No 161
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Probab=60.41 E-value=52 Score=24.76 Aligned_cols=67 Identities=10% Similarity=-0.013 Sum_probs=52.2
Q ss_pred cccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCC-CHHHHHHHHHHh
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTT-KVDQRQVLMERF 100 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~-~~~~r~~~~~~f 100 (160)
...|-|.+.+..++....+.+.+.||=+.+-++...++-.-...|+++.++-... .+..+...+..|
T Consensus 64 ptgSfKdR~a~~~l~~a~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~ 131 (360)
T 2d1f_A 64 PTGSFKDRGMTMAVTDALAHGQRAVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMH 131 (360)
T ss_dssp TTSBTTHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHTCEEEEEECSSCCCHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHc
Confidence 4567899999999988877777776666777788888877788899988877665 556677777777
No 162
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=60.34 E-value=37 Score=29.56 Aligned_cols=57 Identities=5% Similarity=-0.027 Sum_probs=42.0
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhc--CCeEEEEECCCC
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDGTTK 89 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~ 89 (160)
.+++++|.....-.+......+.+++|-+.....+....+.+... ++.+..++|+.+
T Consensus 61 apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~ 119 (997)
T 4a4z_A 61 AHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ 119 (997)
T ss_dssp CCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE
T ss_pred ECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 455789997544444444566789999999999888888888774 678888999765
No 163
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=60.14 E-value=15 Score=26.21 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=34.3
Q ss_pred HHHHHHHHHHH-hcCCCeEEEEeccHH-HHHHHHHHHHhcCCe-EEEEECCC
Q psy13224 40 LQSLDVILRKL-KAGGHRVLIFTQMTR-MLDVLEAFLNFHGHI-YLRLDGTT 88 (160)
Q Consensus 40 ~~~l~~ll~~~-~~~~~k~lif~~~~~-~~~~l~~~l~~~~~~-~~~~~g~~ 88 (160)
...+.+.+..+ ...+..++|||+.-. ........|...|+. +..+.|+.
T Consensus 66 ~~~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~ 117 (271)
T 1e0c_A 66 REQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGL 117 (271)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHH
T ss_pred HHHHHHHHHHcCCCCCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 34566667665 345678999998654 566777788888985 66787753
No 164
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=60.10 E-value=25 Score=29.83 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=43.2
Q ss_pred cCchHHHHHHHHHHHhc-CCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEEC
Q psy13224 36 DCGKLQSLDVILRKLKA-GGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDG 86 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~-~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g 86 (160)
+++|...+..++..+.. .+.++++-+.+...++.+.+.+...+++++.+.+
T Consensus 381 GTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~vvRlg~ 432 (800)
T 2wjy_A 381 GTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCA 432 (800)
T ss_dssp TSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCEEECCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcceEeecc
Confidence 57899999999988776 5779999999999999999999888887666543
No 165
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=59.84 E-value=17 Score=26.89 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=34.2
Q ss_pred HHHHHHHHHH-hcCCCeEEEEeccHH-HHHHHHHHHHhcCCe-EEEEECC
Q psy13224 41 QSLDVILRKL-KAGGHRVLIFTQMTR-MLDVLEAFLNFHGHI-YLRLDGT 87 (160)
Q Consensus 41 ~~l~~ll~~~-~~~~~k~lif~~~~~-~~~~l~~~l~~~~~~-~~~~~g~ 87 (160)
..+.+.+..+ ...+..++|||+... ........|...|+. +..+.|+
T Consensus 97 ~~~~~~l~~lgi~~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG 146 (318)
T 3hzu_A 97 EQFAELMDRKGIARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGG 146 (318)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCC
Confidence 4566677665 345679999998655 566777888888985 7778774
No 166
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Probab=59.47 E-value=53 Score=24.56 Aligned_cols=76 Identities=8% Similarity=-0.034 Sum_probs=55.6
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCC-CHHHHHHHHHHhccCCCceEEEE
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTT-KVDQRQVLMERFNMDARIFCFIL 111 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~-~~~~r~~~~~~f~~~~~~~vll~ 111 (160)
....|-|.+.+..++....+.+.+.||=+.+-++...++-.-...|+++.++-... .+..+...+..| . -.++++
T Consensus 55 ~ptgS~KdR~a~~~l~~a~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~--G--A~V~~v 130 (351)
T 3aey_A 55 NPTGSFKDRGMTLAVSKAVEGGAQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVH--G--ARIVQV 130 (351)
T ss_dssp STTSBTTHHHHHHHHHHHHHTTCSEEEESCSSHHHHHHHHHHHHHTSEEEEEEETTCSCHHHHHHHHHT--T--CEEEEE
T ss_pred CCcccHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHc--C--CEEEEE
Confidence 34567899999999988877777777767777888888877788899987766554 456677777777 2 345555
Q ss_pred e
Q psy13224 112 S 112 (160)
Q Consensus 112 ~ 112 (160)
.
T Consensus 131 ~ 131 (351)
T 3aey_A 131 E 131 (351)
T ss_dssp E
T ss_pred C
Confidence 4
No 167
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=58.85 E-value=28 Score=21.11 Aligned_cols=98 Identities=12% Similarity=-0.045 Sum_probs=54.1
Q ss_pred HHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccC---CCceEEEEeccccccccccc-
Q psy13224 48 RKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMD---ARIFCFILSTRSGGVGINLT- 123 (160)
Q Consensus 48 ~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~---~~~~vll~~~~~~~~Gldl~- 123 (160)
..+.+.+..+..+.+..+. .+.+....+..++++-..+..+-...+...+.. +...+++++...-..-....
T Consensus 21 ~~~l~~~~~v~~~~~~~~a----~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~ 96 (133)
T 3nhm_A 21 RLLLSGEFDCTTAADGASG----LQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQ 96 (133)
T ss_dssp HHHHTTTSEEEEESSHHHH----HHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTS
T ss_pred HHHHhCCcEEEEECCHHHH----HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhh
Confidence 3333455566655544333 334555678888888777655555555555432 34566666654221112211
Q ss_pred -cCCEEEEeCCCCCcChhhHHHHHHHhcC
Q psy13224 124 -GADTVVFYDSDWNPTMDAQAQDRCHRIG 151 (160)
Q Consensus 124 -~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 151 (160)
+++. ++.-|.++..+.+++.++.+.+
T Consensus 97 ~g~~~--~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 97 PVPDA--YLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp CCCSE--EEESSCCHHHHHHHHHHHHHHH
T ss_pred cCCce--EEeccCCHHHHHHHHHHHHhhh
Confidence 3333 3445888888888888886543
No 168
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=58.71 E-value=66 Score=25.42 Aligned_cols=96 Identities=17% Similarity=0.054 Sum_probs=55.6
Q ss_pred ccccCchHHH-HHHHHHHHhcC------CCeEEEEeccHHHHHHHHHHHHh--------cCCeEEEEECCCCHHHHHHHH
Q psy13224 33 IQYDCGKLQS-LDVILRKLKAG------GHRVLIFTQMTRMLDVLEAFLNF--------HGHIYLRLDGTTKVDQRQVLM 97 (160)
Q Consensus 33 ~~~~~~K~~~-l~~ll~~~~~~------~~k~lif~~~~~~~~~l~~~l~~--------~~~~~~~~~g~~~~~~r~~~~ 97 (160)
.+++++|... +.-++..+... +.++||.+.+...+..+.+.+.. .++.+..+.|+.+.......+
T Consensus 118 apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 197 (563)
T 3i5x_A 118 AKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKM 197 (563)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHH
T ss_pred CCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHH
Confidence 3567899975 33333333222 23899999998887766666654 245677788887755433333
Q ss_pred HHhccCCCceEEEEeccccc----c--ccccccCCEEEEeC
Q psy13224 98 ERFNMDARIFCFILSTRSGG----V--GINLTGADTVVFYD 132 (160)
Q Consensus 98 ~~f~~~~~~~vll~~~~~~~----~--Gldl~~~~~vi~~~ 132 (160)
... ...++++++...- . ...+.....+|+=+
T Consensus 198 ~~~----~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 234 (563)
T 3i5x_A 198 NKL----RPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDE 234 (563)
T ss_dssp HHH----CCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEET
T ss_pred hcC----CCCEEEECcHHHHHHHHhccccccccceEEEEeC
Confidence 222 3455666655432 1 23455677776644
No 169
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=58.65 E-value=37 Score=22.55 Aligned_cols=77 Identities=12% Similarity=0.114 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccc
Q psy13224 42 SLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGIN 121 (160)
Q Consensus 42 ~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gld 121 (160)
.+.+.+.......+.+-|.+.+......+.+.|...|+++..+++... .| . ..+.+++ --.+-|+-
T Consensus 49 ~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~--~--~~v~v~t-~~~~KGlE 114 (174)
T 3dmn_A 49 QVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RL--A--PGVIVVP-SFLAKGLE 114 (174)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CC--C--SSEEEEE-GGGCTTCC
T ss_pred HHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------cc--C--CCeEEEE-ccccCCcC
Confidence 444444442223456778888888889999999999998877765432 12 2 2334443 44445766
Q ss_pred cccCCEEEEeCCCC
Q psy13224 122 LTGADTVVFYDSDW 135 (160)
Q Consensus 122 l~~~~~vi~~~~~~ 135 (160)
.+.||.+++..
T Consensus 115 ---f~~V~~~~~~~ 125 (174)
T 3dmn_A 115 ---FDAVIVWNANQ 125 (174)
T ss_dssp ---EEEEEEETCBT
T ss_pred ---CCEEEEecCCc
Confidence 56777877654
No 170
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=58.15 E-value=33 Score=24.00 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=40.0
Q ss_pred cccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCC
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTK 89 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~ 89 (160)
.++++|......++... +.++++++.....+..+.+.+..-+.. +..++|+..
T Consensus 116 ~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~ 169 (237)
T 2fz4_A 116 PTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK 169 (237)
T ss_dssp SSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB
T ss_pred CCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 44678998877777543 679999999988877777777776777 777777654
No 171
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=57.94 E-value=22 Score=30.21 Aligned_cols=51 Identities=25% Similarity=0.268 Sum_probs=42.4
Q ss_pred cCchHHHHHHHHHHHhc-CCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEEC
Q psy13224 36 DCGKLQSLDVILRKLKA-GGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDG 86 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~-~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g 86 (160)
+++|...+.+++..+.. .+.++++-+.+...++.+.+.|...+++++.+.+
T Consensus 385 GTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~ilR~g~ 436 (802)
T 2xzl_A 385 GTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLTA 436 (802)
T ss_dssp TSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCEEECCC
T ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccEEeecc
Confidence 57899999999887755 5779999999999999999999888877666543
No 172
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=57.08 E-value=10 Score=24.21 Aligned_cols=37 Identities=8% Similarity=0.104 Sum_probs=29.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCC
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTK 89 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~ 89 (160)
.++++++||..-.........|...|+. +..+.|+..
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4568999999877777888889999985 777778765
No 173
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}
Probab=56.67 E-value=59 Score=24.28 Aligned_cols=68 Identities=12% Similarity=-0.001 Sum_probs=51.9
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCC-CHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTT-KVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~-~~~~r~~~~~~f 100 (160)
....|-|.+.+..++....+.+.+.||=+.+-++...++-.-...|+++.++-... .+..+...+..|
T Consensus 57 ~ptGS~KdR~a~~~l~~a~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~ 125 (352)
T 2zsj_A 57 NPTGSFKDRGMTLAISKAVEAGKRAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIY 125 (352)
T ss_dssp STTSBTTHHHHHHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHhcCCcEEEEECCCCCCHHHHHHHHHc
Confidence 34567899999999988877777676666777888888887788899987766554 456666777777
No 174
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=56.53 E-value=17 Score=26.21 Aligned_cols=47 Identities=13% Similarity=0.309 Sum_probs=32.5
Q ss_pred HHHHHHHHH-hcCCCeEEEEeccHH-HHHHHHHHHHhcCCe-EEEEECCC
Q psy13224 42 SLDVILRKL-KAGGHRVLIFTQMTR-MLDVLEAFLNFHGHI-YLRLDGTT 88 (160)
Q Consensus 42 ~l~~ll~~~-~~~~~k~lif~~~~~-~~~~l~~~l~~~~~~-~~~~~g~~ 88 (160)
.+.+.+..+ ...+.++++||+.-. ........|...|+. +..+.|+.
T Consensus 66 ~~~~~~~~~gi~~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~ 115 (285)
T 1uar_A 66 EFAKLMERLGISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGR 115 (285)
T ss_dssp HHHHHHHHTTCCTTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 455666654 345678999998755 456677788888884 67777753
No 175
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=56.43 E-value=96 Score=26.63 Aligned_cols=64 Identities=13% Similarity=0.021 Sum_probs=44.0
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHH----HhcCCeEEEEECCCCHHHHHHH
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFL----NFHGHIYLRLDGTTKVDQRQVL 96 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l----~~~~~~~~~~~g~~~~~~r~~~ 96 (160)
..++++|.....--+-...-.|..++|.+.+.+.+....+.+ +..|+++..+.|+.+..+|...
T Consensus 103 a~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~ 170 (844)
T 1tf5_A 103 MKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREA 170 (844)
T ss_dssp CCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHh
Confidence 455789988755433211234778999999988765554444 4569999999999998766543
No 176
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=55.44 E-value=49 Score=28.90 Aligned_cols=57 Identities=11% Similarity=-0.009 Sum_probs=39.8
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCC
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTK 89 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~ 89 (160)
..++++|.....-.+......+.++++-+.....+....+.+....-.+..++|+.+
T Consensus 108 apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~ 164 (1010)
T 2xgj_A 108 AHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT 164 (1010)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCE
T ss_pred CCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCc
Confidence 445689998765444444566789999999888776666666654336777888765
No 177
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=54.92 E-value=50 Score=29.15 Aligned_cols=57 Identities=11% Similarity=-0.009 Sum_probs=43.6
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCC
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTK 89 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~ 89 (160)
..++++|.....-.+......+.+++|-+.....+....+.+....-.+..++|+.+
T Consensus 206 ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~ 262 (1108)
T 3l9o_A 206 AHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT 262 (1108)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB
T ss_pred CCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc
Confidence 345689998766666555567889999999998888777777775547788888776
No 178
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=54.87 E-value=40 Score=22.27 Aligned_cols=47 Identities=13% Similarity=-0.050 Sum_probs=28.9
Q ss_pred CCeEEEEeccHH----HHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 54 GHRVLIFTQMTR----MLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 54 ~~k~lif~~~~~----~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
..++++.+--.+ -...+..+|+..|+.+..+....++++-.....++
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~ 68 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQE 68 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHT
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhc
Confidence 347777763222 35667777777787776666667766655555544
No 179
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=54.79 E-value=59 Score=23.70 Aligned_cols=75 Identities=13% Similarity=0.066 Sum_probs=53.5
Q ss_pred cccCchHHHHHHHHHHHhcCCC----eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEE
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGH----RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCF 109 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~----k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vl 109 (160)
++.|-|.+....++....+.+. ..||=+..-++...++......|+++.++-....+..+...+..| +-.++
T Consensus 36 ptGSfK~R~a~~~i~~a~~~g~~~~g~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~----Ga~v~ 111 (303)
T 2v03_A 36 PAGSVKDRAALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAY----GAELI 111 (303)
T ss_dssp TTSBTHHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHT----TCEEE
T ss_pred CCCCcHHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHc----CCEEE
Confidence 3466799999888887765554 445555557778888888888899988777665556777778777 23455
Q ss_pred EEe
Q psy13224 110 ILS 112 (160)
Q Consensus 110 l~~ 112 (160)
++.
T Consensus 112 ~~~ 114 (303)
T 2v03_A 112 LVT 114 (303)
T ss_dssp EEC
T ss_pred EEC
Confidence 554
No 180
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=54.76 E-value=61 Score=23.86 Aligned_cols=74 Identities=14% Similarity=0.043 Sum_probs=54.1
Q ss_pred ccCchHHHHHHHHHHHhcCCCeEEEEe--ccHHHHHHHHHHHHhcCCeEEEEECCCC-HHHHHHHHHHhccCCCceEEEE
Q psy13224 35 YDCGKLQSLDVILRKLKAGGHRVLIFT--QMTRMLDVLEAFLNFHGHIYLRLDGTTK-VDQRQVLMERFNMDARIFCFIL 111 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~~~~~k~lif~--~~~~~~~~l~~~l~~~~~~~~~~~g~~~-~~~r~~~~~~f~~~~~~~vll~ 111 (160)
..+-|.+.+..++....+.|.+.+|=+ ..-++...++-.-...|+++.++-.... +..+...+..| +-.++++
T Consensus 50 ~gs~K~R~~~~~i~~a~~~G~~~vv~~G~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~----GA~v~~~ 125 (325)
T 1j0a_A 50 IGGNKIRKLEYLLGDALSKGADVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIM----GIETRVY 125 (325)
T ss_dssp TCSTHHHHHHHHHHHHHHTTCSEEEEECCTTCHHHHHHHHHHHHTTCEEEEEEESCCCSCHHHHHHHHT----TCEEEEE
T ss_pred CCchHHHHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHHHHHhCCcEEEEECCCCCCCchHHHHHHC----CCEEEEe
Confidence 467899999999988777776555543 6678888899888899999877665555 67777788777 2344554
Q ss_pred e
Q psy13224 112 S 112 (160)
Q Consensus 112 ~ 112 (160)
.
T Consensus 126 ~ 126 (325)
T 1j0a_A 126 D 126 (325)
T ss_dssp S
T ss_pred C
Confidence 4
No 181
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=54.35 E-value=33 Score=20.68 Aligned_cols=96 Identities=7% Similarity=-0.045 Sum_probs=48.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccC---CCceEEEEeccccccccccccCCEEE
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMD---ARIFCFILSTRSGGVGINLTGADTVV 129 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~---~~~~vll~~~~~~~~Gldl~~~~~vi 129 (160)
.|..+..+.+..+. .+.+....+..++++-..+..+-...+...+.. +...+++++......-.....+.-.-
T Consensus 29 ~g~~v~~~~~~~~a----~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~g~~~ 104 (132)
T 3lte_A 29 DHWQVEIAHNGFDA----GIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADD 104 (132)
T ss_dssp TTCEEEEESSHHHH----HHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEECCSCSHHHHHHHHHTCCE
T ss_pred CCcEEEEeCCHHHH----HHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEEeCCChHHHHHHHHhChHH
Confidence 45566555443332 234455677788888777665555566665532 23333443322111111111111223
Q ss_pred EeCCCCCcChhhHHHHHHHhcCC
Q psy13224 130 FYDSDWNPTMDAQAQDRCHRIGQ 152 (160)
Q Consensus 130 ~~~~~~~~~~~~Q~~gR~~R~gq 152 (160)
++.-|.++..+.+++.+....+.
T Consensus 105 ~l~kP~~~~~l~~~i~~~~~~~~ 127 (132)
T 3lte_A 105 YLEKPFDNDALLDRIHDLVNEGH 127 (132)
T ss_dssp EECSSCCHHHHHHHHHHHHC---
T ss_pred HhhCCCCHHHHHHHHHHHcCCCC
Confidence 44567788888888888776543
No 182
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=54.34 E-value=24 Score=25.37 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=34.6
Q ss_pred HHHHHHHHHH-hcCCCeEEEEeccHHHHHHHHHHHH-hcCC-eEEEEECCCC
Q psy13224 41 QSLDVILRKL-KAGGHRVLIFTQMTRMLDVLEAFLN-FHGH-IYLRLDGTTK 89 (160)
Q Consensus 41 ~~l~~ll~~~-~~~~~k~lif~~~~~~~~~l~~~l~-~~~~-~~~~~~g~~~ 89 (160)
..+.+.+..+ ...++.+++||..-.........|. ..|+ ++..+.|+..
T Consensus 219 ~~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~ 270 (285)
T 1uar_A 219 EELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWT 270 (285)
T ss_dssp HHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred HHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHH
Confidence 3444555432 2346789999998777777778888 8898 5788888765
No 183
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=54.27 E-value=10 Score=24.85 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=28.8
Q ss_pred CCeEEEEeccHH---------HHHHHHHHHHhcCCeEEEEECCCC
Q psy13224 54 GHRVLIFTQMTR---------MLDVLEAFLNFHGHIYLRLDGTTK 89 (160)
Q Consensus 54 ~~k~lif~~~~~---------~~~~l~~~l~~~~~~~~~~~g~~~ 89 (160)
++.+++||..-. ........|...|+++..+.|+..
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~~ 137 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 137 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcHH
Confidence 568999998762 466778888889999888988854
No 184
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=53.66 E-value=34 Score=20.63 Aligned_cols=67 Identities=15% Similarity=0.137 Sum_probs=38.8
Q ss_pred HHHHHHhcCCCeEEEEe-ccHHHHHHHHHHHHhcCCeEEEEECCCC---HHHHHHHHHHhccCCCceEEEEe
Q psy13224 45 VILRKLKAGGHRVLIFT-QMTRMLDVLEAFLNFHGHIYLRLDGTTK---VDQRQVLMERFNMDARIFCFILS 112 (160)
Q Consensus 45 ~ll~~~~~~~~k~lif~-~~~~~~~~l~~~l~~~~~~~~~~~g~~~---~~~r~~~~~~f~~~~~~~vll~~ 112 (160)
+.++.+.... ++++|+ .++..+......|+..++.+..++=... ..+....+..+........+++.
T Consensus 10 ~~~~~~i~~~-~v~vy~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi~ 80 (113)
T 3rhb_A 10 ESIRKTVTEN-TVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVC 80 (113)
T ss_dssp HHHHHHHHHS-SEEEEECTTCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEET
T ss_pred HHHHHHHhcC-CEEEEECCCChhHHHHHHHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEEC
Confidence 3444433333 577776 4666799999999999998877776542 23333334443223344444444
No 185
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=53.55 E-value=32 Score=21.84 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 67 LDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 67 ~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
+.....+|+..|+.+-.++=...++.|....+..
T Consensus 19 c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~ 52 (121)
T 1u6t_A 19 QQDVLGFLEANKIGFEEKDIAANEENRKWMRENV 52 (121)
T ss_dssp HHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhc
Confidence 4788999999999999999999999999998887
No 186
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=53.39 E-value=71 Score=26.24 Aligned_cols=92 Identities=8% Similarity=0.028 Sum_probs=57.7
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHh---cCCeEEEEECCCCHHHHHHHHHHhccCCCceEE
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNF---HGHIYLRLDGTTKVDQRQVLMERFNMDARIFCF 109 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~---~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vl 109 (160)
.+++++|.......+-.....+.++++.+.....+....+.++. .|+++..++|.....++ . .+...++
T Consensus 47 apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~------~--~~~~~Ii 118 (702)
T 2p6r_A 47 MPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE------H--LGDCDII 118 (702)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS------C--STTCSEE
T ss_pred cCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh------h--ccCCCEE
Confidence 44568999876544433334577999999998877777766642 47889999997765432 1 2345666
Q ss_pred EEecccc----ccccc-cccCCEEEEeC
Q psy13224 110 ILSTRSG----GVGIN-LTGADTVVFYD 132 (160)
Q Consensus 110 l~~~~~~----~~Gld-l~~~~~vi~~~ 132 (160)
++++... ..+-. +.+...||+=+
T Consensus 119 v~Tpe~l~~~l~~~~~~l~~~~~vIiDE 146 (702)
T 2p6r_A 119 VTTSEKADSLIRNRASWIKAVSCLVVDE 146 (702)
T ss_dssp EEEHHHHHHHHHTTCSGGGGCCEEEETT
T ss_pred EECHHHHHHHHHcChhHHhhcCEEEEee
Confidence 6665322 22222 56777777644
No 187
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=53.21 E-value=34 Score=24.39 Aligned_cols=48 Identities=13% Similarity=0.111 Sum_probs=34.4
Q ss_pred HHHHHHHHH-hcCCCeEEEEeccHHHHHHHHHHHHh-cCCe-EEEEECCCC
Q psy13224 42 SLDVILRKL-KAGGHRVLIFTQMTRMLDVLEAFLNF-HGHI-YLRLDGTTK 89 (160)
Q Consensus 42 ~l~~ll~~~-~~~~~k~lif~~~~~~~~~l~~~l~~-~~~~-~~~~~g~~~ 89 (160)
.|.+.+... ...++++++||..-.........|.. .|+. +..+.|+..
T Consensus 213 ~l~~~~~~~~~~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~ 263 (277)
T 3aay_A 213 ELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWT 263 (277)
T ss_dssp HHHHHHHHHTCCTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred HHHHHHHHcCCCCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchHH
Confidence 455566543 24567999999987777777778875 8985 788888754
No 188
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=53.17 E-value=64 Score=23.59 Aligned_cols=75 Identities=11% Similarity=0.014 Sum_probs=54.4
Q ss_pred cccCchHHHHHHHHHHHhcCCC----eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEE
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGH----RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCF 109 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~----k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vl 109 (160)
...|-|.+....++....+.+. ..||=+.+-++...++......|+++.++-....+..+...+..| +-.++
T Consensus 42 ptgSfK~R~a~~~l~~a~~~g~~~~g~~vv~assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~----Ga~v~ 117 (313)
T 2q3b_A 42 PANSVKDRIGVAMLQAAEQAGLIKPDTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAY----GAELI 117 (313)
T ss_dssp TTSBTHHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHT----TCEEE
T ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHC----CCEEE
Confidence 3467799999999987766554 455667777888889888888999988776655556677777777 33455
Q ss_pred EEe
Q psy13224 110 ILS 112 (160)
Q Consensus 110 l~~ 112 (160)
++.
T Consensus 118 ~~~ 120 (313)
T 2q3b_A 118 LTP 120 (313)
T ss_dssp EEC
T ss_pred EeC
Confidence 554
No 189
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=52.87 E-value=39 Score=27.06 Aligned_cols=72 Identities=15% Similarity=0.093 Sum_probs=36.6
Q ss_pred ccccCchHHHHHHHHHHHhc---------CCCeEEEEeccHHHHHHHH-HHHHhcCCeEEEEECCCCHHHHHHHHHHhcc
Q psy13224 33 IQYDCGKLQSLDVILRKLKA---------GGHRVLIFTQMTRMLDVLE-AFLNFHGHIYLRLDGTTKVDQRQVLMERFNM 102 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~---------~~~k~lif~~~~~~~~~l~-~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~ 102 (160)
..++++|......++..+.. .+.++|+.+.+...+.... +.++..+.....+.++..
T Consensus 205 ~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~------------- 271 (590)
T 3h1t_A 205 MATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFTPFGDARHKIEGGKV------------- 271 (590)
T ss_dssp ECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCTTTCSSEEECCC--C-------------
T ss_pred ecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHHhcchhhhhhhccCC-------------
Confidence 44568899888777776654 3468888888777665555 555544444444432211
Q ss_pred CCCceEEEEeccccc
Q psy13224 103 DARIFCFILSTRSGG 117 (160)
Q Consensus 103 ~~~~~vll~~~~~~~ 117 (160)
.....+++.++....
T Consensus 272 ~~~~~I~v~T~~~l~ 286 (590)
T 3h1t_A 272 VKSREIYFAIYQSIA 286 (590)
T ss_dssp CSSCSEEEEEGGGC-
T ss_pred CCCCcEEEEEhhhhc
Confidence 334556666666554
No 190
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=52.67 E-value=65 Score=23.50 Aligned_cols=67 Identities=10% Similarity=-0.009 Sum_probs=48.8
Q ss_pred cccCchHHHHHHHHHHHhcCCC--eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGH--RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~--k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
+..|-|.+....++....+.+. +.+|=+.+-++...++......|+++.++-....+..+...+..|
T Consensus 42 ptGSfK~R~a~~~l~~a~~~g~~~~~vv~aSsGN~g~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~ 110 (303)
T 1o58_A 42 PGGSVKDRPALFMILDAEKRGLLKNGIVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKML 110 (303)
T ss_dssp TTSBTTHHHHHHHHHHHHHTTCCTTCEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHcCCCCCCEEEECchHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHc
Confidence 3567799999988887765554 334555556777888888888899987766655556777777777
No 191
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=52.67 E-value=18 Score=22.98 Aligned_cols=37 Identities=5% Similarity=0.213 Sum_probs=28.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCC
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTK 89 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~ 89 (160)
.++.+++||..-.........|...|+. +..+.|+..
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 4568999998776666677788888985 777888773
No 192
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=52.51 E-value=32 Score=24.58 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=32.1
Q ss_pred HHHHHHHHHH-hcCCCeEEEEeccHH-HHHHHHHHHHhcCC-eEEEEECC
Q psy13224 41 QSLDVILRKL-KAGGHRVLIFTQMTR-MLDVLEAFLNFHGH-IYLRLDGT 87 (160)
Q Consensus 41 ~~l~~ll~~~-~~~~~k~lif~~~~~-~~~~l~~~l~~~~~-~~~~~~g~ 87 (160)
..+.+.+..+ ...+..+++||.... ........|...|+ ++..+.|+
T Consensus 63 ~~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG 112 (277)
T 3aay_A 63 QQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGG 112 (277)
T ss_dssp HHHHHHHHHHTCCTTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCC
Confidence 4556666654 344678999998743 35666778888888 57778775
No 193
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=52.15 E-value=66 Score=23.42 Aligned_cols=75 Identities=9% Similarity=-0.001 Sum_probs=54.5
Q ss_pred cccCchHHHHHHHHHHHhcCCC----e--EEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCce
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGH----R--VLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIF 107 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~----k--~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~ 107 (160)
...|-|.+....++....+.+. + .||=+.+-++...++......|+++.++-....+..+...+..| +-.
T Consensus 35 ptGSfK~R~a~~~l~~a~~~g~~~~g~~~~vv~assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~----Ga~ 110 (304)
T 1ve1_A 35 PGGSIKDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAF----GAE 110 (304)
T ss_dssp TTSBTTHHHHHHHHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHT----TCE
T ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCCCccEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHc----CCE
Confidence 3567899999999888766554 4 66666677888888888888899988776655556777777777 234
Q ss_pred EEEEe
Q psy13224 108 CFILS 112 (160)
Q Consensus 108 vll~~ 112 (160)
++++.
T Consensus 111 V~~~~ 115 (304)
T 1ve1_A 111 LVLTD 115 (304)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 45544
No 194
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=52.00 E-value=66 Score=23.43 Aligned_cols=62 Identities=15% Similarity=0.050 Sum_probs=43.1
Q ss_pred eEEEEeccHHHHHHHHHHHHhc--CCeEEEEECCCC--HHHHHHHHHHhccCCCceEEEEeccccc
Q psy13224 56 RVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDGTTK--VDQRQVLMERFNMDARIFCFILSTRSGG 117 (160)
Q Consensus 56 k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~--~~~r~~~~~~f~~~~~~~vll~~~~~~~ 117 (160)
++=+++++-.....+...+... |+++++-.|+.. .-.-...++.|.+++..+++++..+.++
T Consensus 146 ~i~~vsqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~l~~D~~t~~I~l~~E~~~ 211 (288)
T 2nu8_A 146 KVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGG 211 (288)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSS
T ss_pred CEEEEECcHHHHHHHHHHHHhcCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCC
Confidence 4556777777777777777776 555555555544 2456778899988888888888766553
No 195
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=51.98 E-value=74 Score=23.97 Aligned_cols=62 Identities=11% Similarity=0.019 Sum_probs=46.2
Q ss_pred CeEEEEeccHHHHHHHHHHHHhc--CCeEEEEECCC--CHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 55 HRVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDGTT--KVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 55 ~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g~~--~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
.++=+++++-.....+...+... |++.++-.|+. ..-.-..+++.|.+++..+++++.....
T Consensus 169 G~vgivSqSG~l~~~i~~~~~~~g~G~S~~VsiGn~~~~d~~~~D~l~~~~~Dp~T~~I~l~gEi~ 234 (334)
T 3mwd_B 169 GSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIG 234 (334)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESS
T ss_pred CCEEEEeCchHHHHHHHHHHHhcCCCeEEEEECCCCccCCCCHHHHHHHHhcCCCCCEEEEEEecC
Confidence 36778899888888888887766 55666666665 5556778999999888888888774433
No 196
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=50.85 E-value=70 Score=23.40 Aligned_cols=76 Identities=9% Similarity=-0.069 Sum_probs=55.3
Q ss_pred ccccCchHHHHHHHHHHHhcCCC----eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceE
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGH----RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFC 108 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~----k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~v 108 (160)
.++.|-|.+....++....+.+. ..||=+..-++...++......|+++.++-....+..+...+..| . -.+
T Consensus 36 ~ptGSfK~R~a~~~i~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~--G--A~v 111 (316)
T 1y7l_A 36 NPSYSVKCRIGANMVWQAEKDGTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGL--G--VNL 111 (316)
T ss_dssp SGGGBTHHHHHHHHHHHHHHTTSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHT--T--CEE
T ss_pred CCCCChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHc--C--CEE
Confidence 34567799999999988776654 456666667888888888888899988776665666777788777 2 344
Q ss_pred EEEe
Q psy13224 109 FILS 112 (160)
Q Consensus 109 ll~~ 112 (160)
+++.
T Consensus 112 ~~~~ 115 (316)
T 1y7l_A 112 VLTE 115 (316)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 5554
No 197
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=50.70 E-value=1.2e+02 Score=26.08 Aligned_cols=63 Identities=11% Similarity=-0.015 Sum_probs=42.8
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHH----HHHHHhcCCeEEEEECCCCHHHHHH
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVL----EAFLNFHGHIYLRLDGTTKVDQRQV 95 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l----~~~l~~~~~~~~~~~g~~~~~~r~~ 95 (160)
..++++|..+..--+-.....|.+++|-+.+.+.+... ....+..|+++..+.|+.+..+|..
T Consensus 94 m~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~ 160 (853)
T 2fsf_A 94 MRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKRE 160 (853)
T ss_dssp CCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHH
T ss_pred ecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHH
Confidence 44578998775433321123567899999988865444 4444556999999999999765543
No 198
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=50.21 E-value=76 Score=23.59 Aligned_cols=76 Identities=12% Similarity=0.016 Sum_probs=54.1
Q ss_pred ccccCchHHHHHHHHHHHhcCCC----e-EEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCce
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGH----R-VLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIF 107 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~----k-~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~ 107 (160)
..+.|-|.+....++....+.|. + +||-+..-++...++..-...|+++.++-....+..+...+..| +-.
T Consensus 45 ~ptGSfK~R~a~~~i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~----GA~ 120 (334)
T 3tbh_A 45 NPMASVKDRLGFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIF----GAE 120 (334)
T ss_dssp STTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHT----TCE
T ss_pred CCccCcHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHC----CCE
Confidence 34567899998888877766653 3 34555557788888888888899988777766667777777777 334
Q ss_pred EEEEe
Q psy13224 108 CFILS 112 (160)
Q Consensus 108 vll~~ 112 (160)
++++.
T Consensus 121 V~~~~ 125 (334)
T 3tbh_A 121 VILTP 125 (334)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 55554
No 199
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=50.10 E-value=74 Score=23.46 Aligned_cols=63 Identities=17% Similarity=0.014 Sum_probs=45.5
Q ss_pred CeEEEEeccHHHHHHHHHHHHhc--CCeEEEEECCCC--HHHHHHHHHHhccCCCceEEEEeccccc
Q psy13224 55 HRVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDGTTK--VDQRQVLMERFNMDARIFCFILSTRSGG 117 (160)
Q Consensus 55 ~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~--~~~r~~~~~~f~~~~~~~vll~~~~~~~ 117 (160)
.++=+++++-.....+...+... |++.++-.|+.. .-.-...++.|.+++..+++++..+.++
T Consensus 153 G~va~vSqSG~l~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~g 219 (305)
T 2fp4_A 153 GRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGG 219 (305)
T ss_dssp EEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESSS
T ss_pred CCEEEEecchHHHHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecCC
Confidence 36778888888888888888776 555555555553 2456778999988888888888766553
No 200
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=49.96 E-value=72 Score=23.25 Aligned_cols=75 Identities=9% Similarity=-0.031 Sum_probs=54.7
Q ss_pred cccCchHHHHHHHHHHHhcCCC----eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEE
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGH----RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCF 109 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~----k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vl 109 (160)
...|-|.+.+..++....+.+. ..||=..+-++...++......|+++.++-....+..+...+..| +-.++
T Consensus 40 ptgSfK~R~a~~~l~~a~~~g~~~~g~~vv~assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~----GA~v~ 115 (308)
T 2egu_A 40 PGSSVKDRIALAMIEAAEKAGKLKPGDTIVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAY----GAELV 115 (308)
T ss_dssp TTSBTHHHHHHHHHHHHHHTTCCCTTCEEEEECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHT----TCEEE
T ss_pred CCCChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHc----CCEEE
Confidence 3467799999999988766554 466667778888889988888999987766655556677777777 23445
Q ss_pred EEe
Q psy13224 110 ILS 112 (160)
Q Consensus 110 l~~ 112 (160)
++.
T Consensus 116 ~~~ 118 (308)
T 2egu_A 116 LTP 118 (308)
T ss_dssp EEC
T ss_pred EEC
Confidence 554
No 201
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=49.42 E-value=41 Score=25.86 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=34.9
Q ss_pred HHHHHHHHHH-hcCCCeEEEEeccHHHHHHHHHHHHhcCC-eEEEEECCCC
Q psy13224 41 QSLDVILRKL-KAGGHRVLIFTQMTRMLDVLEAFLNFHGH-IYLRLDGTTK 89 (160)
Q Consensus 41 ~~l~~ll~~~-~~~~~k~lif~~~~~~~~~l~~~l~~~~~-~~~~~~g~~~ 89 (160)
..|.+.+... ...++.+++||..-.........|...|+ ++..+.|+.+
T Consensus 189 ~~l~~~~~~~gi~~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~ 239 (423)
T 2wlr_A 189 EQLKAMLAKHGIRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQ 239 (423)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHH
Confidence 4455566543 23456899999987777778888888898 4778887643
No 202
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=49.14 E-value=70 Score=24.67 Aligned_cols=109 Identities=9% Similarity=0.034 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHh--------cCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEE
Q psy13224 40 LQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNF--------HGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFIL 111 (160)
Q Consensus 40 ~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~--------~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~ 111 (160)
..-+.++|+.+.+.|-++-|-++... ..+...++. .++......++-+++.-.++++.++-++... +++
T Consensus 258 ypgv~e~L~~Lk~~Gi~laI~Snn~~--~~v~~~l~~~~~~~l~l~~~~~v~~~~KPKp~~l~~al~~Lgl~pee~-v~V 334 (387)
T 3nvb_A 258 FTEFQEWVKKLKNRGIIIAVCSKNNE--GKAKEPFERNPEMVLKLDDIAVFVANWENKADNIRTIQRTLNIGFDSM-VFL 334 (387)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESCH--HHHHHHHHHCTTCSSCGGGCSEEEEESSCHHHHHHHHHHHHTCCGGGE-EEE
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCH--HHHHHHHhhccccccCccCccEEEeCCCCcHHHHHHHHHHhCcCcccE-EEE
Confidence 45677888888888888877777554 344444443 4666666665555566677888886444443 443
Q ss_pred eccccccccccccCCEEEEeCCCCCcChhhHHHHHHHhcC
Q psy13224 112 STRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIG 151 (160)
Q Consensus 112 ~~~~~~~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 151 (160)
.-+......--....-|-..+.|.++..+.+...+.+.+-
T Consensus 335 GDs~~Di~aaraalpgV~vi~~p~d~~~~~~~l~~~~~f~ 374 (387)
T 3nvb_A 335 DDNPFERNMVREHVPGVTVPELPEDPGDYLEYLYTLNLFE 374 (387)
T ss_dssp CSCHHHHHHHHHHSTTCBCCCCCSSGGGHHHHHHTTCTTC
T ss_pred CCCHHHHHHHHhcCCCeEEEEcCcCHHHHHHHHhhcCccc
Confidence 3221111000112223444456778888888888776653
No 203
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=49.05 E-value=28 Score=22.61 Aligned_cols=24 Identities=13% Similarity=-0.057 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCC---eEEEEECCCCHH
Q psy13224 68 DVLEAFLNFHGH---IYLRLDGTTKVD 91 (160)
Q Consensus 68 ~~l~~~l~~~~~---~~~~~~g~~~~~ 91 (160)
.++...|...|+ ++..+.|+...-
T Consensus 87 ~~~~~~L~~~G~~~~~v~~L~GG~~~W 113 (152)
T 2j6p_A 87 NRFALAQKKLGYVLPAVYVLRGGWEAF 113 (152)
T ss_dssp HHHHHHHHHHTCCCSEEEEETTHHHHH
T ss_pred HHHHHHHHHcCCCCCCEEEEcCcHHHH
Confidence 355577888886 677898887643
No 204
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=48.78 E-value=1.2e+02 Score=26.64 Aligned_cols=64 Identities=11% Similarity=0.020 Sum_probs=43.6
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHH----HHHHHHHhcCCeEEEEECCCCHHHHHHH
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLD----VLEAFLNFHGHIYLRLDGTTKVDQRQVL 96 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~----~l~~~l~~~~~~~~~~~g~~~~~~r~~~ 96 (160)
..++++|.....--+-...-.|.+++|-+.+...+. ++....+..|+++..+.|+.+.++|...
T Consensus 99 akTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~a 166 (997)
T 2ipc_A 99 MKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKA 166 (997)
T ss_dssp CCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHH
T ss_pred ccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHH
Confidence 345678987654333112235778999999887544 4455555679999999999997766654
No 205
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=48.66 E-value=27 Score=25.02 Aligned_cols=50 Identities=14% Similarity=-0.052 Sum_probs=35.5
Q ss_pred HHHHHHHHH-hcCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCCHH
Q psy13224 42 SLDVILRKL-KAGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTKVD 91 (160)
Q Consensus 42 ~l~~ll~~~-~~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~~ 91 (160)
.+.+++... ...++++++||..-.........|...|+. +..+.|+...-
T Consensus 217 ~l~~~~~~~~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~W 268 (280)
T 1urh_A 217 ELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW 268 (280)
T ss_dssp HHHHHHHTTTCCSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-
T ss_pred HHHHHHHHcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHHH
Confidence 444444432 234578999999877777778888889995 88899988754
No 206
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=47.94 E-value=38 Score=23.49 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCCeEEEEeccHH-HHHHHHHHHHhcCCe-EEEEECC
Q psy13224 41 QSLDVILRKLKAGGHRVLIFTQMTR-MLDVLEAFLNFHGHI-YLRLDGT 87 (160)
Q Consensus 41 ~~l~~ll~~~~~~~~k~lif~~~~~-~~~~l~~~l~~~~~~-~~~~~g~ 87 (160)
..+.+.+..+ ..+.++++||.... ........|. .|+. +..++|+
T Consensus 49 ~~~~~~~~~l-~~~~~ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 49 GGLTELFQTL-GLRSPVVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp HHHHHHHHHT-TCCSSEEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS
T ss_pred HHHHHHHHhc-CCCCEEEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC
Confidence 3455556554 23679999998765 5667778888 8985 7788887
No 207
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=46.46 E-value=48 Score=20.18 Aligned_cols=59 Identities=12% Similarity=0.131 Sum_probs=37.0
Q ss_pred CeEEEEec-cHHHHHHHHHHHHhcCCeEEEEECCC--CHHHHHHHHHHhccCCCceEEEEec
Q psy13224 55 HRVLIFTQ-MTRMLDVLEAFLNFHGHIYLRLDGTT--KVDQRQVLMERFNMDARIFCFILST 113 (160)
Q Consensus 55 ~k~lif~~-~~~~~~~l~~~l~~~~~~~~~~~g~~--~~~~r~~~~~~f~~~~~~~vll~~~ 113 (160)
.+++||+. ++..+......|...++.+..++=.. ...+....+...........+++.-
T Consensus 17 ~~v~vy~~~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi~g 78 (114)
T 3h8q_A 17 SRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNK 78 (114)
T ss_dssp CSEEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEETT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHcCCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEECC
Confidence 47888885 56679999999999999988887664 2233333343333234444455443
No 208
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=45.86 E-value=47 Score=19.97 Aligned_cols=58 Identities=19% Similarity=0.110 Sum_probs=40.8
Q ss_pred CCeEEEEec------cHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe
Q psy13224 54 GHRVLIFTQ------MTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS 112 (160)
Q Consensus 54 ~~k~lif~~------~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~ 112 (160)
..+++||+. ++..+......|...++.+..++-...++.+..+..... .....++++.
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g-~~~vP~ifi~ 77 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSN-WPTYPQLYVR 77 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHS-CCSSCEEECS
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhC-CCCCCEEEEC
Confidence 347888877 555788899999999999999988877766666655543 2333344433
No 209
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=45.50 E-value=91 Score=23.14 Aligned_cols=96 Identities=11% Similarity=0.115 Sum_probs=56.1
Q ss_pred ccccCchHHHHHH-HHHHHhc--CCCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHHHhccCCC
Q psy13224 33 IQYDCGKLQSLDV-ILRKLKA--GGHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLMERFNMDAR 105 (160)
Q Consensus 33 ~~~~~~K~~~l~~-ll~~~~~--~~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 105 (160)
..++++|...... ++..+.. .+.+++|.+.+...+..+.+.+.. .+..+....|+.+..... .... ...
T Consensus 84 a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~ 159 (414)
T 3eiq_A 84 AQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEV---QKLQ-MEA 159 (414)
T ss_dssp CCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHH---HHHT-TTC
T ss_pred CCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHH---HHHh-cCC
Confidence 4457899987443 4443332 356899999998877666666654 367777777777654432 2232 234
Q ss_pred ceEEEEeccccc-----cccccccCCEEEEeC
Q psy13224 106 IFCFILSTRSGG-----VGINLTGADTVVFYD 132 (160)
Q Consensus 106 ~~vll~~~~~~~-----~Gldl~~~~~vi~~~ 132 (160)
..++++++...- ..+++...+.+|+=+
T Consensus 160 ~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDE 191 (414)
T 3eiq_A 160 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDE 191 (414)
T ss_dssp CSEEEECHHHHHHHHHHTSSCSTTCCEEEECS
T ss_pred CCEEEECHHHHHHHHHcCCcccccCcEEEEEC
Confidence 555666544321 234455666666533
No 210
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=44.54 E-value=91 Score=22.85 Aligned_cols=91 Identities=5% Similarity=-0.002 Sum_probs=54.1
Q ss_pred ccccCchHHHHHHHH-HHHhc--CCCeEEEEeccHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHHHhccCCC
Q psy13224 33 IQYDCGKLQSLDVIL-RKLKA--GGHRVLIFTQMTRMLDVLEAFLNF----HGHIYLRLDGTTKVDQRQVLMERFNMDAR 105 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll-~~~~~--~~~k~lif~~~~~~~~~l~~~l~~----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 105 (160)
.+++++|.......+ ..+.. .+.++||.+.+...+....+.+.. .++....+.++..... ....
T Consensus 51 a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 121 (395)
T 3pey_A 51 SQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN---------KQIN 121 (395)
T ss_dssp CCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT---------SCBC
T ss_pred CCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh---------ccCC
Confidence 356789998655444 33322 356899999998887777766665 3566666666543221 0223
Q ss_pred ceEEEEeccccc-----cccccccCCEEEEeC
Q psy13224 106 IFCFILSTRSGG-----VGINLTGADTVVFYD 132 (160)
Q Consensus 106 ~~vll~~~~~~~-----~Gldl~~~~~vi~~~ 132 (160)
..++++++.... ..+++.+.+.+|+=+
T Consensus 122 ~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 122 AQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153 (395)
T ss_dssp CSEEEECHHHHHHHHHTTCBCCTTCCEEEEET
T ss_pred CCEEEEcHHHHHHHHHcCCcccccCCEEEEEC
Confidence 455666655432 334566777777644
No 211
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=43.78 E-value=98 Score=23.01 Aligned_cols=47 Identities=15% Similarity=0.067 Sum_probs=37.8
Q ss_pred CeEEEEeccH------------HHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhcc
Q psy13224 55 HRVLIFTQMT------------RMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNM 102 (160)
Q Consensus 55 ~k~lif~~~~------------~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~ 102 (160)
...||+++.. ..++.|.+.|+..|+. +.+....+..+=.+.+++|..
T Consensus 62 g~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~-V~~~~dlt~~em~~~l~~f~~ 120 (316)
T 2fp3_A 62 GVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFT-IFPYGNVNQDQFFKLLTMVTS 120 (316)
T ss_dssp EEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEE-EEEECSCCHHHHHHHHHHHHT
T ss_pred cEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCE-EEEccCCCHHHHHHHHHHHHH
Confidence 4778888752 5789999999999999 466778888888888888863
No 212
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=43.63 E-value=47 Score=19.28 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=34.0
Q ss_pred eEEEEecc-HHHH------HHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 56 RVLIFTQM-TRML------DVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 56 k~lif~~~-~~~~------~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
+++||+.. +-.+ ....+.|...++.+..++=...++.+..+....
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~ 54 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLA 54 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHh
Confidence 57777654 3345 688889999999999998888877777666665
No 213
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=42.55 E-value=31 Score=25.03 Aligned_cols=51 Identities=8% Similarity=-0.078 Sum_probs=35.4
Q ss_pred HHHHHHHHHH-hcCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCCHH
Q psy13224 41 QSLDVILRKL-KAGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTKVD 91 (160)
Q Consensus 41 ~~l~~ll~~~-~~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~~ 91 (160)
+.+.+++... ...++.+++||..-.........|...|+. +..+.|+...-
T Consensus 226 ~~l~~~~~~~~~~~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W 278 (296)
T 1rhs_A 226 EELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEW 278 (296)
T ss_dssp HHHHHHHHHTTCCTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHHH
T ss_pred HHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHHHH
Confidence 3445555432 234678999999866666677778888985 77888887643
No 214
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=42.38 E-value=29 Score=24.75 Aligned_cols=48 Identities=10% Similarity=0.010 Sum_probs=34.2
Q ss_pred HHHHHHHHH-hcCCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCC
Q psy13224 42 SLDVILRKL-KAGGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTK 89 (160)
Q Consensus 42 ~l~~ll~~~-~~~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~ 89 (160)
.+.+++... ...++++++||..-.........|...|++ +..+.|+..
T Consensus 210 ~l~~~~~~~~~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 259 (271)
T 1e0c_A 210 DIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWG 259 (271)
T ss_dssp THHHHHHHTTCCTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHH
T ss_pred HHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 344455532 245679999999876677778888888985 778888654
No 215
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.37 E-value=56 Score=19.85 Aligned_cols=45 Identities=18% Similarity=0.230 Sum_probs=34.4
Q ss_pred eEEEEecc-HHHHH------HHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 56 RVLIFTQM-TRMLD------VLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 56 k~lif~~~-~~~~~------~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
+++||+.. +..+. .....|+..++.+..++=...++.+..+...+
T Consensus 9 ~V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~ 60 (111)
T 2ct6_A 9 VIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNV 60 (111)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSC
T ss_pred EEEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh
Confidence 67788743 33455 68899999999999999888877777776665
No 216
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=42.02 E-value=1.1e+02 Score=22.87 Aligned_cols=75 Identities=15% Similarity=-0.052 Sum_probs=51.7
Q ss_pred cccCchHHHHHHHHHHHhcCCC----eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEE
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGH----RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCF 109 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~----k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vl 109 (160)
.+.|-|.+....++....+.+. ..||=+..-++...++......|+++.++-....+..+...+..| +-.++
T Consensus 53 ptGSfKdR~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~----GA~V~ 128 (343)
T 2pqm_A 53 PMSSVKDRVGFNIVYQAIKDGRLKPGMEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAF----GAELI 128 (343)
T ss_dssp TTSBTHHHHHHHHHHHHHHHTSSCTTCEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHT----TCEEE
T ss_pred CCCChHHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHC----CCEEE
Confidence 3456799988888877655443 345555556777888888888899988776665567777778777 23445
Q ss_pred EEe
Q psy13224 110 ILS 112 (160)
Q Consensus 110 l~~ 112 (160)
++.
T Consensus 129 ~~~ 131 (343)
T 2pqm_A 129 LTE 131 (343)
T ss_dssp EEC
T ss_pred EEC
Confidence 544
No 217
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=41.81 E-value=80 Score=21.83 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHH
Q psy13224 41 QSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQ 92 (160)
Q Consensus 41 ~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~ 92 (160)
....+|...+...-.+|-||.+.. .+.+.+.++..++.++-+||..+++.
T Consensus 40 ~~a~~i~~~~~~~~~~VgVfvn~~--~~~i~~~~~~~~ld~vQLHG~e~~~~ 89 (203)
T 1v5x_A 40 EAARAIGEALGPFVVRVGVFRDQP--PEEVLRLMEEARLQVAQLHGEEPPEW 89 (203)
T ss_dssp HHHHHHHHHSCSSSEEEEEESSCC--HHHHHHHHHHTTCSEEEECSCCCHHH
T ss_pred HHHHHHHHhCCCCCCEEEEEeCCC--HHHHHHHHHhhCCCEEEECCCCCHHH
Confidence 444455554333345888999854 56788888888999999999988764
No 218
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=40.25 E-value=1.1e+02 Score=22.48 Aligned_cols=75 Identities=12% Similarity=0.008 Sum_probs=53.8
Q ss_pred cccCchHHHHHHHHHHHhcCCC-----eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceE
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGH-----RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFC 108 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~-----k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~v 108 (160)
...|-|.+....++....+.|. ..||=+.+-++...++......|+++.++-....+..+...+..| . -.+
T Consensus 41 ptGSfK~R~a~~~l~~a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~--G--A~V 116 (322)
T 1z7w_A 41 PCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAF--G--VEL 116 (322)
T ss_dssp TTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHT--T--CEE
T ss_pred CCCchHHHHHHHHHHHHHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHc--C--CEE
Confidence 3567799998888887766664 455555667788888888888899988776655556777777777 2 344
Q ss_pred EEEe
Q psy13224 109 FILS 112 (160)
Q Consensus 109 ll~~ 112 (160)
+++.
T Consensus 117 ~~~~ 120 (322)
T 1z7w_A 117 VLTD 120 (322)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 5544
No 219
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=40.04 E-value=1.1e+02 Score=22.72 Aligned_cols=68 Identities=10% Similarity=0.051 Sum_probs=48.8
Q ss_pred ccccCchHHHHHHHHHHHhcC----CCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAG----GHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~----~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
....|-|.+....++..+.+. +.+.||=+..-++...++-.-...|+++.++-....+..+...+..|
T Consensus 50 ~ptGSfK~Rga~~~i~~a~~~g~~~~~~~vv~~SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~ 121 (346)
T 3l6b_A 50 QKTGSFKIRGALNAVRSLVPDALERKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAY 121 (346)
T ss_dssp SGGGBTHHHHHHHHHHTTC-----CCCSCEEEECSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHHHHHHHhccccCCCEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHC
Confidence 445678999988888776553 33444544556778888888888899987776666667777788777
No 220
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Probab=40.02 E-value=73 Score=23.50 Aligned_cols=66 Identities=11% Similarity=0.090 Sum_probs=47.7
Q ss_pred ccCchHHHHHHHHHHHhcCCCeEEE-E-eccHHHHHHHHHHHHhcCCeEEEEECCCCHHH--------HHHHHHHh
Q psy13224 35 YDCGKLQSLDVILRKLKAGGHRVLI-F-TQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQ--------RQVLMERF 100 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~~~~~k~li-f-~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~--------r~~~~~~f 100 (160)
..|-|.+.+..++....+.+.+.|| | ..+-++...++..-...|+++.++-....+.+ +...+..|
T Consensus 47 ~gs~K~R~a~~~l~~a~~~g~~~vv~~GassGN~g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~ 122 (338)
T 1tzj_A 47 FGGNKTRKLEYLIPEALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRIL 122 (338)
T ss_dssp TCCHHHHHHHTTHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHcCCCEEEEcCCchhHHHHHHHHHHHHhCCceEEEecCCCCccccccccCccHHHHHhC
Confidence 5678999998888877667765555 4 46667888888888888999877655443332 66677777
No 221
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=39.61 E-value=59 Score=19.30 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=39.8
Q ss_pred CCeEEEEe-ccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe
Q psy13224 54 GHRVLIFT-QMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS 112 (160)
Q Consensus 54 ~~k~lif~-~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~ 112 (160)
..++.||+ .++..+......|+..++.+..++-...++.+..+...........++++.
T Consensus 15 ~~~v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~ifi~ 74 (99)
T 3qmx_A 15 SAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQIFID 74 (99)
T ss_dssp CCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHHTTTCCCSCEEEET
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEEEEC
Confidence 34788876 456678999999999999999888887766665554433123334444444
No 222
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=39.40 E-value=67 Score=21.93 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=21.8
Q ss_pred ccccCCEEEEeCCCCCcChh---hHHHHHHHhcC
Q psy13224 121 NLTGADTVVFYDSDWNPTMD---AQAQDRCHRIG 151 (160)
Q Consensus 121 dl~~~~~vi~~~~~~~~~~~---~Q~~gR~~R~g 151 (160)
.+..++.||+..|.|+.... ...+.|+.+.|
T Consensus 67 ~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv~~~g 100 (204)
T 2amj_A 67 NFLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEG 100 (204)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHHHHT
T ss_pred HHHhCCEEEEECCccccCCCHHHHHHHHHHhhcC
Confidence 35678889999999985544 45677765544
No 223
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=39.25 E-value=1.1e+02 Score=22.51 Aligned_cols=92 Identities=10% Similarity=-0.014 Sum_probs=54.8
Q ss_pred ccccCchHHHH-HHHHHHHhcC--CCeEEEEeccHHHHHHHHHHHHhc-----CCeEEEEECCCCHHHHHHHHHHhccCC
Q psy13224 33 IQYDCGKLQSL-DVILRKLKAG--GHRVLIFTQMTRMLDVLEAFLNFH-----GHIYLRLDGTTKVDQRQVLMERFNMDA 104 (160)
Q Consensus 33 ~~~~~~K~~~l-~~ll~~~~~~--~~k~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~~~ 104 (160)
.+++++|.... .-++..+... +.++||.+.+...+..+.+.++.. ++......++...... . ..
T Consensus 71 apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~ 142 (412)
T 3fht_A 71 SQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------Q-KI 142 (412)
T ss_dssp CCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT-------C-CC
T ss_pred CCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh-------h-cC
Confidence 35678999764 4444444322 338999999998877776666652 5666666665543211 0 22
Q ss_pred CceEEEEeccccc------cccccccCCEEEEeC
Q psy13224 105 RIFCFILSTRSGG------VGINLTGADTVVFYD 132 (160)
Q Consensus 105 ~~~vll~~~~~~~------~Gldl~~~~~vi~~~ 132 (160)
...++++++.... ..+++.+.+.+|+=+
T Consensus 143 ~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDE 176 (412)
T 3fht_A 143 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 176 (412)
T ss_dssp CCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEET
T ss_pred CCCEEEECchHHHHHHHhcCCcChhhCcEEEEeC
Confidence 3455666655432 244556777777755
No 224
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=39.11 E-value=28 Score=23.33 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeE
Q psy13224 40 LQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIY 81 (160)
Q Consensus 40 ~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~ 81 (160)
...+.+-+......|..+++.+...+....+.+.+++.|+.+
T Consensus 121 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~ 162 (204)
T 3e05_A 121 LEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYMV 162 (204)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCce
Confidence 333444444455677788888777788888899999998743
No 225
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=38.91 E-value=1.3e+02 Score=23.09 Aligned_cols=91 Identities=10% Similarity=-0.013 Sum_probs=52.5
Q ss_pred cccCchHHHH-HHHHHHHhcC--CCeEEEEeccHHHHHHHHHHHHh-----cCCeEEEEECCCCHHHHHHHHHHhccCCC
Q psy13224 34 QYDCGKLQSL-DVILRKLKAG--GHRVLIFTQMTRMLDVLEAFLNF-----HGHIYLRLDGTTKVDQRQVLMERFNMDAR 105 (160)
Q Consensus 34 ~~~~~K~~~l-~~ll~~~~~~--~~k~lif~~~~~~~~~l~~~l~~-----~~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 105 (160)
.++++|.... .-++..+... +.++||.+.+...+..+.+.++. .++......++...... ....
T Consensus 139 ~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 210 (479)
T 3fmp_B 139 QSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG--------QKIS 210 (479)
T ss_dssp CSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT--------CCCC
T ss_pred CCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc--------ccCC
Confidence 4678999874 4444433222 22899999998877766555543 25566666665442210 0223
Q ss_pred ceEEEEeccccc------cccccccCCEEEEeC
Q psy13224 106 IFCFILSTRSGG------VGINLTGADTVVFYD 132 (160)
Q Consensus 106 ~~vll~~~~~~~------~Gldl~~~~~vi~~~ 132 (160)
..++++++...- ..+++.+...+|+=+
T Consensus 211 ~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDE 243 (479)
T 3fmp_B 211 EQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 243 (479)
T ss_dssp CSEEEECHHHHHHHHTTSCCCCGGGCCEEEECC
T ss_pred CCEEEECchHHHHHHHhcCCcCcccCCEEEEEC
Confidence 456666655441 245667787777754
No 226
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=38.55 E-value=85 Score=21.71 Aligned_cols=50 Identities=14% Similarity=0.125 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHH
Q psy13224 41 QSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQ 92 (160)
Q Consensus 41 ~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~ 92 (160)
....+|...+...-.+|-||.+.. .+.+.+.++..++.++-+||..+++.
T Consensus 41 ~~a~~i~~~~~~~~~~VgVfvn~~--~~~i~~~~~~~~ld~vQLHG~e~~~~ 90 (205)
T 1nsj_A 41 EDARRISVELPPFVFRVGVFVNEE--PEKILDVASYVQLNAVQLHGEEPIEL 90 (205)
T ss_dssp HHHHHHHHHSCSSSEEEEEESSCC--HHHHHHHHHHHTCSEEEECSCCCHHH
T ss_pred HHHHHHHHhCCCCCCEEEEEeCCC--HHHHHHHHHhhCCCEEEECCCCCHHH
Confidence 444455554333345888999854 46777888888999999999888754
No 227
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=37.69 E-value=34 Score=23.71 Aligned_cols=39 Identities=15% Similarity=0.029 Sum_probs=31.0
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCH
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKV 90 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~ 90 (160)
..++++++||..-.........|...|.++..+.|+...
T Consensus 182 ~~~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~~ 220 (230)
T 2eg4_A 182 QPGQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMHE 220 (230)
T ss_dssp CTTCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHHH
T ss_pred CCCCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHHH
Confidence 446799999998877778888888888677788887653
No 228
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=37.48 E-value=23 Score=26.00 Aligned_cols=50 Identities=6% Similarity=-0.091 Sum_probs=34.2
Q ss_pred HHHHHHHHHH-hcCCCeEEEEeccHHHHHHHHHHHHhcCC-eEEEEECCCCH
Q psy13224 41 QSLDVILRKL-KAGGHRVLIFTQMTRMLDVLEAFLNFHGH-IYLRLDGTTKV 90 (160)
Q Consensus 41 ~~l~~ll~~~-~~~~~k~lif~~~~~~~~~l~~~l~~~~~-~~~~~~g~~~~ 90 (160)
..+.+++... ...++++++||..-.........|...|+ ++..+.|+...
T Consensus 240 ~~l~~~~~~~~~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~~ 291 (302)
T 3olh_A 240 EEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVE 291 (302)
T ss_dssp HHHHHHHHHTTCCTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHHH
T ss_pred HHHHHHHHhcCCCCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHHH
Confidence 4455556543 23457899999876655666677888898 56778887664
No 229
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=37.41 E-value=28 Score=25.29 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=31.8
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCC-eEEEEECCCCH
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGH-IYLRLDGTTKV 90 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~-~~~~~~g~~~~ 90 (160)
..++++++||..-.........|...|+ ++..+.|+...
T Consensus 179 ~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~a 218 (265)
T 4f67_A 179 KKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGILN 218 (265)
T ss_dssp GTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHHH
Confidence 4567999999987778888889999999 47788888763
No 230
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Probab=37.33 E-value=77 Score=23.51 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=49.4
Q ss_pred ccCchHHHHHHHHHHHhcCCCeEEEE--eccHHHHHHHHHHHHhcCCeEEEEECCCCH-----HH------HHHHHHHh
Q psy13224 35 YDCGKLQSLDVILRKLKAGGHRVLIF--TQMTRMLDVLEAFLNFHGHIYLRLDGTTKV-----DQ------RQVLMERF 100 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~~~~~k~lif--~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~-----~~------r~~~~~~f 100 (160)
..|-|.+.+..++....+.+.+.||- ...-++...++-.-...|+++.++-....+ .+ +...+..|
T Consensus 47 ~Gs~K~R~a~~~l~~a~~~g~~~vv~~G~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~~~~k~~~~~~~ 125 (341)
T 1f2d_A 47 FGGNKLRKLEYIVPDIVEGDYTHLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIM 125 (341)
T ss_dssp TCCHHHHHHTTTHHHHHHSCCSEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHHHHHhCCceEEEeccCCCccccccccccccccHHHHHhC
Confidence 57789999999998877777666665 677778888888888889998766544333 22 66677777
No 231
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=37.14 E-value=1.6e+02 Score=25.60 Aligned_cols=64 Identities=19% Similarity=0.057 Sum_probs=42.8
Q ss_pred ccccCchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHH----HHHHHhcCCeEEEEECCCCHHHHHHH
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVL----EAFLNFHGHIYLRLDGTTKVDQRQVL 96 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l----~~~l~~~~~~~~~~~g~~~~~~r~~~ 96 (160)
..++++|.....--+-...-.|..++|-+.+...+... ....+..|+++..+.|+.+.++|...
T Consensus 131 m~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~ 198 (922)
T 1nkt_A 131 MKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVA 198 (922)
T ss_dssp CCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHh
Confidence 44578898765433211122467899999988865444 44445569999999999998766543
No 232
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=36.18 E-value=1.2e+02 Score=21.90 Aligned_cols=37 Identities=8% Similarity=0.044 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhcc
Q psy13224 65 RMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNM 102 (160)
Q Consensus 65 ~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~ 102 (160)
..++.|.+.|+..|+.+ ......+.++=.+.+++|..
T Consensus 49 ~D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 49 LDAGALTTTFEELHFEI-KPHDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp HHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHHHHH
Confidence 46888999999999995 55667888888888888863
No 233
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=36.16 E-value=40 Score=26.02 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=37.1
Q ss_pred ccccCchHHH-HHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECC
Q psy13224 33 IQYDCGKLQS-LDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGT 87 (160)
Q Consensus 33 ~~~~~~K~~~-l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~ 87 (160)
..++|+|... +..++..+...+.++++-+.+...+..+.+.++ ++.+...+|.
T Consensus 9 a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~--~~~v~~~~~~ 62 (431)
T 2v6i_A 9 LHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR--GEPIRYMTPA 62 (431)
T ss_dssp CCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT--TSCEEEC---
T ss_pred cCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC--CCeEEEEecC
Confidence 3456888876 466776666777899999999998888887776 5565555554
No 234
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=34.40 E-value=39 Score=18.78 Aligned_cols=45 Identities=11% Similarity=0.047 Sum_probs=24.2
Q ss_pred eEEEEe-ccHHHHHHHHHHHHh-----cCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 56 RVLIFT-QMTRMLDVLEAFLNF-----HGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 56 k~lif~-~~~~~~~~l~~~l~~-----~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
++++|+ .++..+......|+. .++.+..++-......+..+.+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~ 52 (85)
T 1ego_A 2 QTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKA 52 (85)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHh
Confidence 455665 445566666666665 577776665332221223455555
No 235
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=34.17 E-value=66 Score=18.25 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=33.8
Q ss_pred eEEEEe-ccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhc
Q psy13224 56 RVLIFT-QMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFN 101 (160)
Q Consensus 56 k~lif~-~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~ 101 (160)
++++|+ .++..+......|+..++.+..++-...+..+....+.+.
T Consensus 7 ~v~ly~~~~C~~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~ 53 (92)
T 2khp_A 7 DVIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSG 53 (92)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCCCEEEESTTSHHHHHHHHHHHT
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhC
Confidence 577776 4566788999999999999888887766555555555553
No 236
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=34.12 E-value=78 Score=19.06 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=33.7
Q ss_pred CeEEEEec-cHHHHHHHHHHHHhcCCe---EEEEECCCCH---HHHHHHHHHhc
Q psy13224 55 HRVLIFTQ-MTRMLDVLEAFLNFHGHI---YLRLDGTTKV---DQRQVLMERFN 101 (160)
Q Consensus 55 ~k~lif~~-~~~~~~~l~~~l~~~~~~---~~~~~g~~~~---~~r~~~~~~f~ 101 (160)
.++++|+. ++-.+..+...|+..++. +..++-...+ +.+..+.+.+.
T Consensus 19 ~~vv~f~~~~Cp~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g 72 (114)
T 2hze_A 19 NKVTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITG 72 (114)
T ss_dssp TCEEEEECTTCHHHHHHHHHHTTSCBCTTSEEEEEGGGSSSHHHHHHHHHHHHS
T ss_pred CCEEEEEeCCChhHHHHHHHHHHcCCCcCceEEEEccCCCChHHHHHHHHHHhC
Confidence 46777765 566799999999999888 8888776553 44455666664
No 237
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=33.83 E-value=1.3e+02 Score=22.28 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=7.7
Q ss_pred ccCCEEEEeCCC
Q psy13224 123 TGADTVVFYDSD 134 (160)
Q Consensus 123 ~~~~~vi~~~~~ 134 (160)
.+...|.+|.+.
T Consensus 279 ~g~P~v~lfg~t 290 (349)
T 3tov_A 279 QGVPIVALYGPS 290 (349)
T ss_dssp TTCCEEEECSSC
T ss_pred cCCCEEEEECCC
Confidence 366777777653
No 238
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.57 E-value=87 Score=19.48 Aligned_cols=46 Identities=11% Similarity=0.063 Sum_probs=33.0
Q ss_pred eEEEEe-ccHHHHHHHHHHHHhcCCeEEEEECCCC---HHHHHHHHHHhc
Q psy13224 56 RVLIFT-QMTRMLDVLEAFLNFHGHIYLRLDGTTK---VDQRQVLMERFN 101 (160)
Q Consensus 56 k~lif~-~~~~~~~~l~~~l~~~~~~~~~~~g~~~---~~~r~~~~~~f~ 101 (160)
++++|+ .++-.+..+...|...++.+..++-... ++.+..+.+.+.
T Consensus 28 ~vvvf~~~~Cp~C~~~~~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~~g 77 (130)
T 2cq9_A 28 CVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTG 77 (130)
T ss_dssp SEEEEECSSCSHHHHHHHHHHHHTCCCEEEETTTSTTHHHHHHHHHHHHS
T ss_pred cEEEEEcCCChHHHHHHHHHHHcCCCcEEEECcCCcCcHHHHHHHHHHhC
Confidence 577776 5566799999999999999888877665 343445555664
No 239
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=33.21 E-value=1.2e+02 Score=21.26 Aligned_cols=91 Identities=9% Similarity=0.093 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCC-eEEEEecc------HHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhcc----CCCceEEE
Q psy13224 42 SLDVILRKLKAGGH-RVLIFTQM------TRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNM----DARIFCFI 110 (160)
Q Consensus 42 ~l~~ll~~~~~~~~-k~lif~~~------~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~----~~~~~vll 110 (160)
.-....+.+.+.|. ++.++... .+...-+.+.|++.|+....+.+..+.+.-...+..+.. .+....++
T Consensus 118 ~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~ 197 (295)
T 3hcw_A 118 ASENLTRHVIEQGVDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKDPNIKQAII 197 (295)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEEE
T ss_pred HHHHHHHHHHHcCCccEEEEcCCccchhHHHHHHHHHHHHHHcCCCeeEEeccCCHHHHHHHHHHHHhhcccCCCCcEEE
Confidence 33444555555565 44444321 122445667778889988778887776655444444431 12455567
Q ss_pred Eeccccc---------cccccccCCEEEEeC
Q psy13224 111 LSTRSGG---------VGINLTGADTVVFYD 132 (160)
Q Consensus 111 ~~~~~~~---------~Gldl~~~~~vi~~~ 132 (160)
+..+.++ .|+.+|.==.|+-+|
T Consensus 198 ~~~d~~A~g~~~al~~~g~~vP~di~vig~D 228 (295)
T 3hcw_A 198 SLDAMLHLAILSVLYELNIEIPKDVMTATFN 228 (295)
T ss_dssp ESSHHHHHHHHHHHHHTTCCTTTTEEEEEEC
T ss_pred ECChHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 6666432 677766444555555
No 240
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=33.13 E-value=75 Score=18.60 Aligned_cols=101 Identities=11% Similarity=0.025 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCC-HHHHHHHHHHhccC---CCceEEEEecccc
Q psy13224 41 QSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTK-VDQRQVLMERFNMD---ARIFCFILSTRSG 116 (160)
Q Consensus 41 ~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~-~~~r~~~~~~f~~~---~~~~vll~~~~~~ 116 (160)
..+..+++. .|-.+..+.+..+.. ..+....+..++++-..+ ...-...+...+.. +...+++++....
T Consensus 19 ~~l~~~L~~---~g~~v~~~~~~~~a~----~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~~~~~~ 91 (127)
T 2gkg_A 19 ATLRSALEG---RGFTVDETTDGKGSV----EQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVIIGNPDG 91 (127)
T ss_dssp HHHHHHHHH---HTCEEEEECCHHHHH----HHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEEECGGG
T ss_pred HHHHHHHHh---cCceEEEecCHHHHH----HHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEEecCCc
Confidence 344444443 355665554433333 333445677888877665 43334444444322 3445555532221
Q ss_pred cccccc--ccCCEEEEeCCCCCcChhhHHHHHHHhc
Q psy13224 117 GVGINL--TGADTVVFYDSDWNPTMDAQAQDRCHRI 150 (160)
Q Consensus 117 ~~Gldl--~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 150 (160)
..-... .++.. ++.-|.++..+.+++.++.+.
T Consensus 92 ~~~~~~~~~g~~~--~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 92 FAQHRKLKAHADE--YVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp HHHHHHSTTCCSE--EEESSCCHHHHHHHHHHHHCC
T ss_pred hhHHHHHHhCcch--heeCCCCHHHHHHHHHHHHcC
Confidence 111111 13333 334477777777888777653
No 241
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=32.98 E-value=1.8e+02 Score=22.99 Aligned_cols=76 Identities=7% Similarity=-0.116 Sum_probs=54.7
Q ss_pred ccccCchHHHHHHHHHHHhcCCC----eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceE
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGGH----RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFC 108 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~~----k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~v 108 (160)
....|-|.+....++....+.|. ..||=+..-++...++..-...|+++.++-....+..+...+..| +-.+
T Consensus 87 ~ptGS~K~R~a~~~i~~a~~~g~~~~g~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~----GA~v 162 (527)
T 3pc3_A 87 NPGGSVKDRIGYRMVQDAEEQGLLKPGYTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTL----GAKI 162 (527)
T ss_dssp STTSBTTHHHHHHHHHHHHHHTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHT----TCEE
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHC----CCEE
Confidence 33467899988888877665553 456666777888888888888899988777766667777788777 2344
Q ss_pred EEEe
Q psy13224 109 FILS 112 (160)
Q Consensus 109 ll~~ 112 (160)
+++.
T Consensus 163 ~~~~ 166 (527)
T 3pc3_A 163 IRTP 166 (527)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 5544
No 242
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=32.94 E-value=88 Score=19.33 Aligned_cols=29 Identities=10% Similarity=0.122 Sum_probs=15.5
Q ss_pred HHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 72 AFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 72 ~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
+.+...++.++.++.....++-....+.+
T Consensus 55 ~~~~~~~~~~v~v~~d~~~~~~~~~~~~~ 83 (152)
T 3gl3_A 55 AKYKAKGFQVVAVNLDAKTGDAMKFLAQV 83 (152)
T ss_dssp HHHGGGTEEEEEEECCSSHHHHHHHHHHS
T ss_pred HHhhcCCeEEEEEECCCCHHHHHHHHHHc
Confidence 33344466777776665554444444444
No 243
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=32.76 E-value=2e+02 Score=23.41 Aligned_cols=84 Identities=13% Similarity=0.138 Sum_probs=49.9
Q ss_pred cccCchHHHHHHHHHHHhcCC-------CeEEEEeccHHHHHHHHHHHHhc--CCeEEEEECCCCHHHHHHHHHHhccCC
Q psy13224 34 QYDCGKLQSLDVILRKLKAGG-------HRVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDGTTKVDQRQVLMERFNMDA 104 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~-------~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~~~~r~~~~~~f~~~~ 104 (160)
..+.+|......++..+...+ .++||.|...-...|..+.-+-. .+....++++.. .++...+..|....
T Consensus 87 ~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~ 165 (644)
T 1z3i_X 87 EMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSK-DEIDSKLVNFISQQ 165 (644)
T ss_dssp CTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHHHHHHGGGCCEEEECSSCH-HHHHHHHHHHHCCC
T ss_pred CCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHHHHHHHcCCCeeEEEEeCCCH-HHHHHHHHHHHHhc
Confidence 346789988888887664432 36899998655555544433322 356667776544 44444455554222
Q ss_pred ----CceEEEEecccccc
Q psy13224 105 ----RIFCFILSTRSGGV 118 (160)
Q Consensus 105 ----~~~vll~~~~~~~~ 118 (160)
...+++++.+....
T Consensus 166 ~~~~~~~vvi~ty~~l~~ 183 (644)
T 1z3i_X 166 GMRIPTPILIISYETFRL 183 (644)
T ss_dssp SSCCSCCEEEEEHHHHHH
T ss_pred CCCCCCcEEEeeHHHHHh
Confidence 35678888776553
No 244
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=32.45 E-value=69 Score=20.78 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCCeEEEEeccH-HHHHHHHHHHHhcCCeEEEEECC
Q psy13224 43 LDVILRKLKAGGHRVLIFTQMT-RMLDVLEAFLNFHGHIYLRLDGT 87 (160)
Q Consensus 43 l~~ll~~~~~~~~k~lif~~~~-~~~~~l~~~l~~~~~~~~~~~g~ 87 (160)
..+.|+.+.+.|.+++|.+... .....+.+.|...++.+..+...
T Consensus 29 ~~~al~~l~~~G~~iii~TgR~~~~~~~~~~~l~~~gi~~~~I~~n 74 (142)
T 2obb_A 29 AVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLEFYAANKD 74 (142)
T ss_dssp HHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCCCSEESSS
T ss_pred HHHHHHHHHHCCCEEEEEeCCCcccHHHHHHHHHHcCCCeEEEEcC
Confidence 4566777777888888888654 34666777888888876555443
No 245
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=32.26 E-value=1.4e+02 Score=21.32 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=36.1
Q ss_pred HHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHH
Q psy13224 46 ILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQ 92 (160)
Q Consensus 46 ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~ 92 (160)
+.+.+.++|-++++.....+.++.+.+.++..|-++..+.+..+..+
T Consensus 23 iA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~ 69 (254)
T 4fn4_A 23 IAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKK 69 (254)
T ss_dssp HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHH
T ss_pred HHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHH
Confidence 33444567888888888778888888888888888888888877654
No 246
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=32.08 E-value=28 Score=21.36 Aligned_cols=35 Identities=6% Similarity=-0.021 Sum_probs=25.5
Q ss_pred eEEEEeccHHHHHHHHHHHHhc------CC-eEEEEECCCCH
Q psy13224 56 RVLIFTQMTRMLDVLEAFLNFH------GH-IYLRLDGTTKV 90 (160)
Q Consensus 56 k~lif~~~~~~~~~l~~~l~~~------~~-~~~~~~g~~~~ 90 (160)
++++||..-.........|... |+ ++..+.|+...
T Consensus 74 ~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~ 115 (127)
T 3i2v_A 74 PIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMA 115 (127)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHH
T ss_pred eEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHHH
Confidence 8999998766666667777776 33 57778887664
No 247
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine deaminase, PLP, threonine DEH L-threonine metabolism; HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A* 2gn2_A*
Probab=31.89 E-value=90 Score=23.21 Aligned_cols=67 Identities=7% Similarity=-0.106 Sum_probs=48.9
Q ss_pred ccccCchHHHHHHHHHHHhc-CC-CeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKA-GG-HRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~-~~-~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
.+..|-|.+....++....+ .+ ..++.. .+-++...++......|+++.++-....+..+...+..|
T Consensus 65 ~ptGSfKdR~a~~~i~~a~~~~~~~~vv~~-ssGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~ 133 (342)
T 2gn0_A 65 QRTGSFKIRGAFNKLSSLTEAEKRKGVVAC-SAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDY 133 (342)
T ss_dssp SGGGBTHHHHHHHHHHHSCHHHHHTCEEEE-CSSHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHH
T ss_pred CCcCChHHHHHHHHHHHHHHhcCCCEEEEE-CCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHc
Confidence 34567899998888876542 22 345454 556777888888888899988877766667788888888
No 248
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=31.45 E-value=69 Score=23.32 Aligned_cols=47 Identities=11% Similarity=0.034 Sum_probs=39.2
Q ss_pred CeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhcc
Q psy13224 55 HRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNM 102 (160)
Q Consensus 55 ~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~ 102 (160)
...|||++....++.|.+.|+..|+.+ ..+...+.++=...+.+|..
T Consensus 44 G~~LIinn~~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~ 90 (272)
T 3h11_A 44 GICLIIDCIGNETELLRDTFTSLGYEV-QKFLHLSMHGISQILGQFAC 90 (272)
T ss_dssp EEEEEEESSCCCCSHHHHHHHHHTEEE-EEEESCBHHHHHHHHHHHHT
T ss_pred eEEEEECCchHHHHHHHHHHHHCCCEE-EEeeCCCHHHHHHHHHHHHh
Confidence 378999999888999999999999985 55567888888888888863
No 249
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=31.03 E-value=77 Score=22.20 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=22.2
Q ss_pred ccccCCEEEEeCCCCCcChh---hHHHHHHHhcC
Q psy13224 121 NLTGADTVVFYDSDWNPTMD---AQAQDRCHRIG 151 (160)
Q Consensus 121 dl~~~~~vi~~~~~~~~~~~---~Q~~gR~~R~g 151 (160)
.+..++.||+..|.|+.... ...+.|+.+.|
T Consensus 80 ~l~~aD~iv~~~P~y~~~~p~~lK~~iD~v~~~g 113 (218)
T 3rpe_A 80 NYLWADTIIYQMPAWWMGEPWILKKYIDEVFTDG 113 (218)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHHHHT
T ss_pred HHHhCCEEEEECChHhccCCHHHHHHHHHHHhcC
Confidence 45688889999998885554 45777776655
No 250
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=30.82 E-value=1.2e+02 Score=20.34 Aligned_cols=84 Identities=8% Similarity=-0.112 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhcc--CCCceEEEEecccccc-ccccccCCEEEEeCCCCCcChhhHHH
Q psy13224 68 DVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNM--DARIFCFILSTRSGGV-GINLTGADTVVFYDSDWNPTMDAQAQ 144 (160)
Q Consensus 68 ~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~--~~~~~vll~~~~~~~~-Gldl~~~~~vi~~~~~~~~~~~~Q~~ 144 (160)
+.+...+....+..+.++-.++..+-...+...+. .+...+++++...-.. -.....+.-.=++.-|.++..+..++
T Consensus 44 ~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i 123 (225)
T 3klo_A 44 WLEENKPESRSIQMLVIDYSRISDDVLTDYSSFKHISCPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGM 123 (225)
T ss_dssp HHHTTCSGGGGCCEEEEEGGGCCHHHHHHHHHHHHHHCTTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHH
T ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHhhCCCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHH
Confidence 33444455667888999988887766666666553 4556666665432211 11111122222345578888888888
Q ss_pred HHHHhcC
Q psy13224 145 DRCHRIG 151 (160)
Q Consensus 145 gR~~R~g 151 (160)
.++.+-+
T Consensus 124 ~~~~~~~ 130 (225)
T 3klo_A 124 SKILQDE 130 (225)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8887644
No 251
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=30.66 E-value=1.5e+02 Score=22.17 Aligned_cols=33 Identities=6% Similarity=-0.090 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHH
Q psy13224 66 MLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLME 98 (160)
Q Consensus 66 ~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~ 98 (160)
.++.+.+.+...+...++-=|+-+.-+-.+.+.
T Consensus 74 ~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA 106 (370)
T 1jq5_A 74 EVERIANIARKAEAAIVIGVGGGKTLDTAKAVA 106 (370)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHH
Confidence 344444444444555444333333344444444
No 252
>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A
Probab=30.54 E-value=1.1e+02 Score=22.05 Aligned_cols=40 Identities=8% Similarity=-0.137 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCCeEEEEeccHH--HHHHHHHHHHhcCCeE
Q psy13224 42 SLDVILRKLKAGGHRVLIFTQMTR--MLDVLEAFLNFHGHIY 81 (160)
Q Consensus 42 ~l~~ll~~~~~~~~k~lif~~~~~--~~~~l~~~l~~~~~~~ 81 (160)
-+.++++.+.+.|-++.|.++..+ ........|+..|+..
T Consensus 105 G~~ell~~L~~~G~ki~ivTgR~~~~~r~~T~~~L~~lGi~~ 146 (262)
T 3ocu_A 105 GAVEFNNYVNSHNGKVFYVTNRKDSTEKSGTIDDMKRLGFNG 146 (262)
T ss_dssp THHHHHHHHHHTTEEEEEEEEEETTTTHHHHHHHHHHHTCSC
T ss_pred cHHHHHHHHHHCCCeEEEEeCCCccchHHHHHHHHHHcCcCc
Confidence 345677777778888888887655 3566777888888874
No 253
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=30.24 E-value=27 Score=21.82 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=26.7
Q ss_pred CCeEEEEeccHHH---------HHHHHHHHHhcCCeEEEEECCCC
Q psy13224 54 GHRVLIFTQMTRM---------LDVLEAFLNFHGHIYLRLDGTTK 89 (160)
Q Consensus 54 ~~k~lif~~~~~~---------~~~l~~~l~~~~~~~~~~~g~~~ 89 (160)
+..+++||+.... ..+....|...|+++..+.|+..
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~~ 127 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 127 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCHH
Confidence 4689999986543 24567778888888888888754
No 254
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=30.10 E-value=72 Score=17.43 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=31.3
Q ss_pred eEEEEe-ccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 56 RVLIFT-QMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 56 k~lif~-~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
++++|+ .++..+..+...|+..++.+..++-...+..+....+.+
T Consensus 2 ~i~~y~~~~C~~C~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~ 47 (82)
T 1fov_A 2 NVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRS 47 (82)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHH
T ss_pred cEEEEECCCChhHHHHHHHHHHCCCCcEEEECCCCHHHHHHHHHHh
Confidence 466665 456678888999998898888887765544445454444
No 255
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=30.06 E-value=1.1e+02 Score=19.71 Aligned_cols=45 Identities=11% Similarity=-0.033 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEE
Q psy13224 39 KLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLD 85 (160)
Q Consensus 39 K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~ 85 (160)
....+.++++.+ .|..+++..........+.+.|+..|+....+.
T Consensus 103 ~~~~~~~~~~~l--pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~ 147 (170)
T 3q87_B 103 GREVIDRFVDAV--TVGMLYLLVIEANRPKEVLARLEERGYGTRILK 147 (170)
T ss_dssp GCHHHHHHHHHC--CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHHHhhC--CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEE
Confidence 356677777765 666777777666677888899999898866553
No 256
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=29.75 E-value=1e+02 Score=19.07 Aligned_cols=55 Identities=7% Similarity=0.050 Sum_probs=28.1
Q ss_pred cCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCC
Q psy13224 77 HGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDS 133 (160)
Q Consensus 77 ~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~ 133 (160)
.++.++.++...+.+.-....+.+. -...++.-........+.+.....++++|+
T Consensus 58 ~~v~vv~v~~d~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~v~~~P~~~lid~ 112 (151)
T 2f9s_A 58 QGVEIVAVNVGESKIAVHNFMKSYG--VNFPVVLDTDRQVLDAYDVSPLPTTFLINP 112 (151)
T ss_dssp GTEEEEEEEESCCHHHHHHHHHHHT--CCSCEEEETTSHHHHHTTCCSSCEEEEECT
T ss_pred CCeEEEEEECCCCHHHHHHHHHHcC--CCceEEECCchHHHHhcCCCCCCeEEEECC
Confidence 4677777776666555444555552 222222222223334455566667666664
No 257
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=29.29 E-value=2.1e+02 Score=22.67 Aligned_cols=59 Identities=8% Similarity=-0.003 Sum_probs=41.2
Q ss_pred eEEEEeccHHHHHHHHHHHHhc--CCeEEEEECCC------CHHHHHHHHHHhccCCCceEEEEecc
Q psy13224 56 RVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDGTT------KVDQRQVLMERFNMDARIFCFILSTR 114 (160)
Q Consensus 56 k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g~~------~~~~r~~~~~~f~~~~~~~vll~~~~ 114 (160)
++=+++++-.....+...+... |+++++-.|+. ..-.-...++.|.+++..+++++...
T Consensus 114 ~vaivSqSGal~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E 180 (480)
T 3dmy_A 114 NIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSK 180 (480)
T ss_dssp EEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEES
T ss_pred CEEEEeccHHHHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEe
Confidence 5667778777777777777776 44555555555 44556778888888888887777654
No 258
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=29.14 E-value=66 Score=21.89 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=24.4
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHH
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTR 65 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~ 65 (160)
.++|...+..++......+.++++|....+
T Consensus 18 gsGKTT~ll~~a~r~~~~g~kV~v~k~~~d 47 (191)
T 1xx6_A 18 YSGKSEELIRRIRRAKIAKQKIQVFKPEID 47 (191)
T ss_dssp TSSHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred CCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 579999999999988888999999975443
No 259
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A*
Probab=29.12 E-value=1.8e+02 Score=21.59 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=46.4
Q ss_pred ccCchHHHHHHHHHHHhcCCCeEEEEec--cHHHHHHHHHHHHhcCCeEEEEEC-CCCH-------HHHHHHHHHh
Q psy13224 35 YDCGKLQSLDVILRKLKAGGHRVLIFTQ--MTRMLDVLEAFLNFHGHIYLRLDG-TTKV-------DQRQVLMERF 100 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~~~~~k~lif~~--~~~~~~~l~~~l~~~~~~~~~~~g-~~~~-------~~r~~~~~~f 100 (160)
..|-|.+.+..++....+.|.+.||-+. +-++...++-.-...|+++.++-. ..+. ..+...+..|
T Consensus 61 ~gs~K~R~~~~~l~~a~~~G~~~vv~~s~tsGN~g~alA~aa~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~ 136 (342)
T 4d9b_A 61 MGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLF 136 (342)
T ss_dssp TCCTHHHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECTTCCCCHHHHHSHHHHHHHHT
T ss_pred CcchHHHhHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHHHHHHhCCcEEEEEeCCCCCccccccccchHHHHHHC
Confidence 5688999999999887777765555442 567788888888888999765544 4432 2356666666
No 260
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=28.79 E-value=67 Score=26.52 Aligned_cols=60 Identities=10% Similarity=0.081 Sum_probs=42.8
Q ss_pred ccccCchHHHH-HHHHHHHhcCCCeEEEEeccHHHHHHHHHHHH---hcCCeEEEEECCCCHHH
Q psy13224 33 IQYDCGKLQSL-DVILRKLKAGGHRVLIFTQMTRMLDVLEAFLN---FHGHIYLRLDGTTKVDQ 92 (160)
Q Consensus 33 ~~~~~~K~~~l-~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~---~~~~~~~~~~g~~~~~~ 92 (160)
.+++++|.... .-+++.+...+.++++-+.....+....+.++ ..|+++..++|+.+..+
T Consensus 46 apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~ 109 (720)
T 2zj8_A 46 IPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKD 109 (720)
T ss_dssp CCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCC
T ss_pred cCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccc
Confidence 44578998765 44555554457799999998887777776664 24889999999776543
No 261
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=28.52 E-value=1e+02 Score=18.70 Aligned_cols=29 Identities=10% Similarity=0.266 Sum_probs=23.8
Q ss_pred EEEEeccHHHHHHHHHHHHhcCCeEEEEE
Q psy13224 57 VLIFTQMTRMLDVLEAFLNFHGHIYLRLD 85 (160)
Q Consensus 57 ~lif~~~~~~~~~l~~~l~~~~~~~~~~~ 85 (160)
+++|+...+++..+.+.+++.|+++....
T Consensus 5 ivvfstdeetlrkfkdiikkngfkvrtvr 33 (134)
T 2l69_A 5 IVVFSTDEETLRKFKDIIKKNGFKVRTVR 33 (134)
T ss_dssp EEECCCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHhcCceEEEec
Confidence 46788888888999999999999987664
No 262
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=28.48 E-value=2.1e+02 Score=22.36 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.6
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEe
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFT 61 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~ 61 (160)
+++|.-.+..|...+...|.++++++
T Consensus 110 G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 110 GSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp TSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 57899999999988888888988877
No 263
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=28.29 E-value=1.9e+02 Score=21.60 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=40.8
Q ss_pred hcCCCeEEEEeccHHHHHHHHHHHHhcCCeE-EEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEE
Q psy13224 51 KAGGHRVLIFTQMTRMLDVLEAFLNFHGHIY-LRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVV 129 (160)
Q Consensus 51 ~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~-~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi 129 (160)
...|..+|.+|++......|....+ .|..+ +.+..+-+..+-........ ..+..+.+++-.++ |.-++.++.||
T Consensus 119 I~~g~~ILTh~~S~tv~~~l~~A~~-~gk~~~V~v~EsrP~~qG~~la~~L~-~~gI~vtli~Dsa~--~~~m~~vd~Vi 194 (315)
T 3ecs_A 119 IKDGATILTHAYSRVVLRVLEAAVA-AKKRFSVYVTESQPDLSGKKMAKALC-HLNVPVTVVLDAAV--GYIMEKADLVI 194 (315)
T ss_dssp CCTTEEEEECSCCHHHHHHHHHHHT-TTCCEEEEEECCTTTTHHHHHHHHHH-TTTCCEEEECGGGH--HHHGGGCSEEE
T ss_pred cCCCCEEEEcCCcHHHHHHHHHHHH-cCCeEEEEEecCCCcchHHHHHHHHH-HcCCCEEEEehhHH--HHHHHhCCEEE
Confidence 3457799999998776666655543 33333 33333333334344455554 44555555554333 33334566665
Q ss_pred Ee
Q psy13224 130 FY 131 (160)
Q Consensus 130 ~~ 131 (160)
.-
T Consensus 195 vG 196 (315)
T 3ecs_A 195 VG 196 (315)
T ss_dssp EE
T ss_pred EC
Confidence 43
No 264
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=28.29 E-value=69 Score=22.47 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=24.8
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccHH
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMTR 65 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~~ 65 (160)
.++|...+..++......+.++++|....+
T Consensus 38 gsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 38 FSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred CCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 579999999999888888999999986554
No 265
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*
Probab=28.17 E-value=92 Score=18.07 Aligned_cols=54 Identities=11% Similarity=0.045 Sum_probs=34.9
Q ss_pred HHHHhcCCCeEEEEe-ccHHHHHHHHHHHHhcCCe---EEEEECCCC---HHHHHHHHHHhc
Q psy13224 47 LRKLKAGGHRVLIFT-QMTRMLDVLEAFLNFHGHI---YLRLDGTTK---VDQRQVLMERFN 101 (160)
Q Consensus 47 l~~~~~~~~k~lif~-~~~~~~~~l~~~l~~~~~~---~~~~~g~~~---~~~r~~~~~~f~ 101 (160)
++.+... .++++|+ .++..+..+...|+..++. +..++-... ++.+..+...+.
T Consensus 5 ~~~~i~~-~~v~~f~~~~C~~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g 65 (105)
T 1kte_A 5 VNSKIQP-GKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTG 65 (105)
T ss_dssp HHHHCCT-TCEEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHS
T ss_pred HHhhccc-CCEEEEEcCCCHhHHHHHHHHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHhC
Confidence 3444333 3566666 5666799999999998888 777776554 333445555564
No 266
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=27.75 E-value=98 Score=18.22 Aligned_cols=90 Identities=11% Similarity=0.070 Sum_probs=49.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccc----cccccccCCEE
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGG----VGINLTGADTV 128 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~----~Gldl~~~~~v 128 (160)
.|..+..+.+..+ ..+.+....+..+.++-.++..+-...+...+......+++++..... ..+.. +++..
T Consensus 25 ~g~~v~~~~~~~~----al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~~~~~~~~~~~~-ga~~~ 99 (120)
T 3f6p_A 25 EGYEVHCAHDGNE----AVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKDSEIDKVIGLEI-GADDY 99 (120)
T ss_dssp TTCEEEEESSHHH----HHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESSCHHHHHHHHHT-TCCEE
T ss_pred CCEEEEEeCCHHH----HHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCCChHHHHHHHhC-Cccee
Confidence 4556655443322 233455667888889888877666666666654444555555543221 12222 23322
Q ss_pred EEeCCCCCcChhhHHHHHHHh
Q psy13224 129 VFYDSDWNPTMDAQAQDRCHR 149 (160)
Q Consensus 129 i~~~~~~~~~~~~Q~~gR~~R 149 (160)
+.-|+++..+..++.++.|
T Consensus 100 --l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 100 --VTKPFSTRELLARVKANLR 118 (120)
T ss_dssp --EEESCCHHHHHHHHHHHHT
T ss_pred --EcCCCCHHHHHHHHHHHHh
Confidence 3346777777777766654
No 267
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=27.10 E-value=52 Score=26.05 Aligned_cols=39 Identities=21% Similarity=0.142 Sum_probs=32.0
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCH
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKV 90 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~ 90 (160)
..++++++||..-.........|...|+++..+.|+...
T Consensus 522 ~~~~~iv~~c~~g~rs~~a~~~l~~~G~~v~~l~gG~~~ 560 (565)
T 3ntd_A 522 PKDKEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGGYRT 560 (565)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHHH
T ss_pred CCcCeEEEEeCCchHHHHHHHHHHHcCCCEEEEcChHHH
Confidence 346789999998777788888999999988888887653
No 268
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=27.02 E-value=1.1e+02 Score=24.66 Aligned_cols=44 Identities=11% Similarity=0.012 Sum_probs=33.6
Q ss_pred ccccCchHHHHHHHHHHHhcCC----CeEEEEeccHHHHHHHHHHHHh
Q psy13224 33 IQYDCGKLQSLDVILRKLKAGG----HRVLIFTQMTRMLDVLEAFLNF 76 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll~~~~~~~----~k~lif~~~~~~~~~l~~~l~~ 76 (160)
-..+++|...+...+..+...+ +++++.+.+...++.+.+.|..
T Consensus 29 a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~ 76 (647)
T 3lfu_A 29 AGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQ 76 (647)
T ss_dssp ECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHH
Confidence 3446899999998887776543 5888888888888888777764
No 269
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=26.81 E-value=1.1e+02 Score=18.45 Aligned_cols=76 Identities=9% Similarity=0.069 Sum_probs=42.3
Q ss_pred HHhcCCeEEEEECCCCH--HHHHHHHHHhcc-CCCceEEEEeccccc----cccccccCCEEEEeCCCCCcChhhHHHHH
Q psy13224 74 LNFHGHIYLRLDGTTKV--DQRQVLMERFNM-DARIFCFILSTRSGG----VGINLTGADTVVFYDSDWNPTMDAQAQDR 146 (160)
Q Consensus 74 l~~~~~~~~~~~g~~~~--~~r~~~~~~f~~-~~~~~vll~~~~~~~----~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR 146 (160)
+....+..++++-..+. .+-...+...+. .+...+++++...-. ..+. .++.. ++.-|.++..+.+++.+
T Consensus 46 l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~-~ga~~--~l~KP~~~~~l~~~i~~ 122 (136)
T 3kto_A 46 QISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVMASSSDIPTAVRAMR-ASAAD--FIEKPFIEHVLVHDVQQ 122 (136)
T ss_dssp CCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEEESSCCHHHHHHHHH-TTCSE--EEESSBCHHHHHHHHHH
T ss_pred HhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH-cChHH--heeCCCCHHHHHHHHHH
Confidence 34445677777777666 555555555543 234555665543221 1221 13333 33457888888888888
Q ss_pred HHhcCC
Q psy13224 147 CHRIGQ 152 (160)
Q Consensus 147 ~~R~gq 152 (160)
+.+.+.
T Consensus 123 ~~~~~~ 128 (136)
T 3kto_A 123 IINGAK 128 (136)
T ss_dssp HHHHHC
T ss_pred HHhccC
Confidence 876543
No 270
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=26.66 E-value=2.3e+02 Score=22.08 Aligned_cols=75 Identities=13% Similarity=-0.004 Sum_probs=54.6
Q ss_pred cccCchHHHHHHHHHHHhcCCC-----eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceE
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGH-----RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFC 108 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~-----k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~v 108 (160)
...|-|.+....++....+.|. ..||=+..-++...++-.-...|+++.++-....+..+...+..| +-.+
T Consensus 149 ptGSfKdRgA~~~i~~A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~----GAeV 224 (430)
T 4aec_A 149 PCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAF----GAEL 224 (430)
T ss_dssp TTSBTTHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHT----TCEE
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHC----CCEE
Confidence 3457799999888887766653 555656667788888888888899988776666667777788777 2345
Q ss_pred EEEe
Q psy13224 109 FILS 112 (160)
Q Consensus 109 ll~~ 112 (160)
+++.
T Consensus 225 v~v~ 228 (430)
T 4aec_A 225 VLTD 228 (430)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 5554
No 271
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=26.59 E-value=1e+02 Score=18.19 Aligned_cols=93 Identities=9% Similarity=-0.013 Sum_probs=49.8
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhc-CCeEEEEECCCCH-HHHHHHHHHhcc-CCCceEEEEecccc----ccccccccC
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNFH-GHIYLRLDGTTKV-DQRQVLMERFNM-DARIFCFILSTRSG----GVGINLTGA 125 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~~-~~~~~~~~g~~~~-~~r~~~~~~f~~-~~~~~vll~~~~~~----~~Gldl~~~ 125 (160)
.|-.+..+.+..+ ..+.+... .+..++++-..+. ..-...+...+. .+...+++++.... ..++..
T Consensus 28 ~g~~v~~~~~~~~----a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~--- 100 (132)
T 2rdm_A 28 AGFLVTAVSSGAK----AIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHAALEWASNGVPD--- 100 (132)
T ss_dssp TTCEEEEESSHHH----HHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTT---
T ss_pred cCCEEEEECCHHH----HHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCC---
Confidence 4556655443322 22344554 6788888876653 333333333331 23455666654322 223222
Q ss_pred CEEEEeCCCCCcChhhHHHHHHHhcCCCC
Q psy13224 126 DTVVFYDSDWNPTMDAQAQDRCHRIGQTR 154 (160)
Q Consensus 126 ~~vi~~~~~~~~~~~~Q~~gR~~R~gq~~ 154 (160)
. -++.-|.++..+.+++.++.+.+...
T Consensus 101 ~--~~l~kP~~~~~l~~~i~~~~~~~~~~ 127 (132)
T 2rdm_A 101 S--IILEKPFTSAQLITAVSQLLNAREGH 127 (132)
T ss_dssp C--EEEESSCCHHHHHHHHHHHHHTTC--
T ss_pred c--ceEeCCCCHHHHHHHHHHHHhcCCCC
Confidence 1 24556888888899999998776543
No 272
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=26.51 E-value=79 Score=20.38 Aligned_cols=40 Identities=10% Similarity=0.001 Sum_probs=24.2
Q ss_pred cCCCeEEEEec-cHH----HHHHHHHHH----HhcCC-eEEEEECCCCHH
Q psy13224 52 AGGHRVLIFTQ-MTR----MLDVLEAFL----NFHGH-IYLRLDGTTKVD 91 (160)
Q Consensus 52 ~~~~k~lif~~-~~~----~~~~l~~~l----~~~~~-~~~~~~g~~~~~ 91 (160)
..++++++||. .-. .+..|...| +..|+ ++..+.|+...-
T Consensus 83 ~~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~W 132 (152)
T 1t3k_A 83 KDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGW 132 (152)
T ss_dssp CSCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHH
T ss_pred CCCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHHH
Confidence 34568889997 322 233333222 44688 677889988744
No 273
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=26.38 E-value=86 Score=17.11 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=28.8
Q ss_pred eEEEEe-ccHHHHHHHHHHHHhcCCeEEEEECCCCHHHH
Q psy13224 56 RVLIFT-QMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQR 93 (160)
Q Consensus 56 k~lif~-~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r 93 (160)
++++|+ .++..+..+...|+..++.+..++-...++.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~ 40 (81)
T 1h75_A 2 RITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAA 40 (81)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTCHHHH
T ss_pred EEEEEcCCCChhHHHHHHHHHHCCCCeEEEECCCCHHHH
Confidence 355665 56778999999999999999888877665444
No 274
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=26.22 E-value=1.1e+02 Score=18.40 Aligned_cols=102 Identities=9% Similarity=-0.038 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhcc---CCCceEEEEeccccc
Q psy13224 41 QSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNM---DARIFCFILSTRSGG 117 (160)
Q Consensus 41 ~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~---~~~~~vll~~~~~~~ 117 (160)
..+..+|.. .|-.+..+.+..+ ..+.+....+..++++-..+...-...+...+. .+...+++++...-.
T Consensus 21 ~~l~~~L~~---~g~~v~~~~~~~~----a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~ 93 (142)
T 3cg4_A 21 IAVKTILSD---AGFHIISADSGGQ----CIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAP 93 (142)
T ss_dssp HHHHHHHHH---TTCEEEEESSHHH----HHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCC
T ss_pred HHHHHHHHH---CCeEEEEeCCHHH----HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCH
Confidence 344445543 3556554443322 334455567888888876654444445554442 345666666544221
Q ss_pred -cccccccCCEEEEeCCCCCcChhhHHHHHHHh
Q psy13224 118 -VGINLTGADTVVFYDSDWNPTMDAQAQDRCHR 149 (160)
Q Consensus 118 -~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R 149 (160)
.-.....+.-.-++.-|.++..+.+++.++.+
T Consensus 94 ~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 94 DAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp CCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 11112222222334557788888888887754
No 275
>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}
Probab=25.75 E-value=1.8e+02 Score=20.89 Aligned_cols=40 Identities=8% Similarity=-0.070 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCCeEEEEeccHH--HHHHHHHHHHhcCCeE
Q psy13224 42 SLDVILRKLKAGGHRVLIFTQMTR--MLDVLEAFLNFHGHIY 81 (160)
Q Consensus 42 ~l~~ll~~~~~~~~k~lif~~~~~--~~~~l~~~l~~~~~~~ 81 (160)
-..++++.+.+.|-++.|.++... ........|+..|+..
T Consensus 105 g~~ell~~L~~~G~~i~ivTgR~~~~~r~~T~~~L~~lGi~~ 146 (260)
T 3pct_A 105 GAVEFSNYVNANGGTMFFVSNRRDDVEKAGTVDDMKRLGFTG 146 (260)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEETTTSHHHHHHHHHHHTCCC
T ss_pred cHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCcCc
Confidence 456677777778888888887654 3566777788888874
No 276
>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A
Probab=24.93 E-value=1.8e+02 Score=20.20 Aligned_cols=60 Identities=8% Similarity=0.034 Sum_probs=33.6
Q ss_pred CCCeEEEEec------cHH--H----HHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe
Q psy13224 53 GGHRVLIFTQ------MTR--M----LDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS 112 (160)
Q Consensus 53 ~~~k~lif~~------~~~--~----~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~ 112 (160)
.++||+||.- .+. + .+.+.+.++..|+..+..-.-.++-.-..+-+.........+.+++
T Consensus 68 k~KkVVLf~vPGAFTPtCS~~hlPgf~~~~d~~~k~kGvd~I~ciSVND~FVm~AW~k~~~~~~~~~i~~la 139 (199)
T 4h86_A 68 ENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAWAKSLGVKDTTHIKFAS 139 (199)
T ss_dssp HCSEEEEEECSCTTCHHHHHTTHHHHHHHHHHHHHHSCCCEEEEEESSCHHHHHHHHHHTTCCCCSSEEEEE
T ss_pred CCCeEEEEEeCCCcCCcCChhhChHHHHHHHHHHHhcCCcEEEEEEcCCHHHHHHHHHHhcccccccccccC
Confidence 3789999861 111 1 2223344567788766666666766555566665433334454444
No 277
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*
Probab=24.70 E-value=1.4e+02 Score=19.08 Aligned_cols=46 Identities=11% Similarity=0.063 Sum_probs=32.2
Q ss_pred eEEEEe-ccHHHHHHHHHHHHhcCCeEEEEECCCC---HHHHHHHHHHhc
Q psy13224 56 RVLIFT-QMTRMLDVLEAFLNFHGHIYLRLDGTTK---VDQRQVLMERFN 101 (160)
Q Consensus 56 k~lif~-~~~~~~~~l~~~l~~~~~~~~~~~g~~~---~~~r~~~~~~f~ 101 (160)
++++|+ .++..+..+...|+..++.+..++-... ++.+..+.+.+.
T Consensus 50 ~Vvvf~~~~Cp~C~~~k~~L~~~~i~~~~vdId~~~~~~~~~~~L~~~~g 99 (146)
T 2ht9_A 50 CVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTG 99 (146)
T ss_dssp SEEEEECTTCHHHHHHHHHHHHHTCCCEEEEGGGCTTHHHHHHHHHHHHS
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCCeEEEECccCcCCHHHHHHHHHHhC
Confidence 566676 5566799999999999988887776554 333445555664
No 278
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=24.64 E-value=60 Score=25.97 Aligned_cols=39 Identities=21% Similarity=0.100 Sum_probs=31.9
Q ss_pred cCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCH
Q psy13224 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKV 90 (160)
Q Consensus 52 ~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~ 90 (160)
..++++++||..-.........|...|+++..+.|+...
T Consensus 539 ~~~~~iv~~C~~g~rs~~a~~~l~~~G~~v~~l~GG~~~ 577 (588)
T 3ics_A 539 PVDKDIYITCQLGMRGYVAARMLMEKGYKVKNVDGGFKL 577 (588)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCcEEEEcchHHH
Confidence 345689999998777788889999999998888887664
No 279
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=24.59 E-value=1.1e+02 Score=23.42 Aligned_cols=48 Identities=8% Similarity=0.003 Sum_probs=33.3
Q ss_pred HHHHHHHHH-hcCCCeEEEEeccHHHHHHHHHHHHhcCC-eEEEEECCCC
Q psy13224 42 SLDVILRKL-KAGGHRVLIFTQMTRMLDVLEAFLNFHGH-IYLRLDGTTK 89 (160)
Q Consensus 42 ~l~~ll~~~-~~~~~k~lif~~~~~~~~~l~~~l~~~~~-~~~~~~g~~~ 89 (160)
.|.+.+... ...++++++||..-.........|...|+ ++..+.|+..
T Consensus 345 ~l~~~~~~~~~~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~~ 394 (423)
T 2wlr_A 345 DITAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWY 394 (423)
T ss_dssp HHHHHHHTTTCCTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHHH
T ss_pred HHHHHHHHcCCCCCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccHH
Confidence 344444321 23457899999987777777778888998 4778888754
No 280
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=24.53 E-value=78 Score=25.11 Aligned_cols=66 Identities=12% Similarity=-0.038 Sum_probs=45.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeC
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYD 132 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~ 132 (160)
.+.+|++.+.+....+.+.+.|...++........ . .+ .++. +.+.......|..++....+++.+
T Consensus 381 ~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~-~---------~~--~~g~--v~i~~g~L~~GF~~p~~klaVITE 446 (483)
T 3hjh_A 381 FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL-D---------EA--SDRG--RYLMIGAAEHGFVDTVRNLALICE 446 (483)
T ss_dssp CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG-G---------GC--CTTC--EEEEESCCCSCEEETTTTEEEEEH
T ss_pred CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCch-h---------hc--CCCc--EEEEEcccccCcccCCCCEEEEEc
Confidence 46799999999999999999999998875433211 0 11 2222 222335567899999888888876
No 281
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=24.53 E-value=1.8e+02 Score=20.17 Aligned_cols=41 Identities=15% Similarity=-0.093 Sum_probs=20.8
Q ss_pred HHHhcCCCeEEEEeccH--HHHHHHHHHHHhcCCeEEEEECCC
Q psy13224 48 RKLKAGGHRVLIFTQMT--RMLDVLEAFLNFHGHIYLRLDGTT 88 (160)
Q Consensus 48 ~~~~~~~~k~lif~~~~--~~~~~l~~~l~~~~~~~~~~~g~~ 88 (160)
+...+.|-.++++.... +......+.+...++..+++.+..
T Consensus 39 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 81 (298)
T 3tb6_A 39 SYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTK 81 (298)
T ss_dssp HHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSS
T ss_pred HHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeccc
Confidence 33344566666665432 222333344445667766666543
No 282
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=24.49 E-value=99 Score=23.43 Aligned_cols=52 Identities=17% Similarity=-0.048 Sum_probs=33.5
Q ss_pred HHHHHHHHHHH-hcCCCeEEEEe-ccH-HHHHHHHHHHHhcCCeEEEEECCCCHH
Q psy13224 40 LQSLDVILRKL-KAGGHRVLIFT-QMT-RMLDVLEAFLNFHGHIYLRLDGTTKVD 91 (160)
Q Consensus 40 ~~~l~~ll~~~-~~~~~k~lif~-~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~ 91 (160)
...+.+.+..+ ...+..++||| ..- .........|...|+++..++|+....
T Consensus 80 ~~~f~~~l~~~gi~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~~V~~L~GG~~aW 134 (373)
T 1okg_A 80 XAEFIDWCMANGMAGELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQAC 134 (373)
T ss_dssp HHHHHHHHHHTTCSSSSCEEEECSSTTTTTHHHHHHHHHHHTCCEEEETTTTHHH
T ss_pred HHHHHHHHHHcCCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCCHHHH
Confidence 34555566543 23457899999 332 223356677888888888899987643
No 283
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=24.47 E-value=1.8e+02 Score=20.10 Aligned_cols=63 Identities=13% Similarity=0.074 Sum_probs=33.5
Q ss_pred HHHHHhcCCCeEEEEeccHH--HHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEec
Q psy13224 46 ILRKLKAGGHRVLIFTQMTR--MLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILST 113 (160)
Q Consensus 46 ll~~~~~~~~k~lif~~~~~--~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~ 113 (160)
+-+...+.|-.++++....+ ....+.+.+...++..+++.+... ...++.+. ..+..++++..
T Consensus 29 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~----~~~~~~l~-~~~iPvV~i~~ 93 (276)
T 3jy6_A 29 ISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN----PQTVQEIL-HQQMPVVSVDR 93 (276)
T ss_dssp HHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC----HHHHHHHH-TTSSCEEEESC
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc----HHHHHHHH-HCCCCEEEEec
Confidence 33333455667777664322 233444555566778777777666 23444444 33444555443
No 284
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=24.43 E-value=87 Score=24.95 Aligned_cols=47 Identities=19% Similarity=0.166 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCC-eEEEEECCCCH
Q psy13224 43 LDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGH-IYLRLDGTTKV 90 (160)
Q Consensus 43 l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~-~~~~~~g~~~~ 90 (160)
|.+.+..+ ..++++++||..-.........|...|+ ++..+.|+...
T Consensus 420 l~~~l~~l-~~~~~ivv~C~sG~rs~~aa~~L~~~G~~~v~~l~GG~~~ 467 (539)
T 1yt8_A 420 LKQALERL-GTAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSA 467 (539)
T ss_dssp HHHHHHHH-CCCSEEEEECSSSHHHHHHHHHHHHHHCSCEEEETTHHHH
T ss_pred HHHHHHhC-CCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEeCCcHHH
Confidence 34445443 5567999999987777778888888887 57788887653
No 285
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=24.01 E-value=1.3e+02 Score=18.29 Aligned_cols=62 Identities=5% Similarity=-0.057 Sum_probs=31.9
Q ss_pred HHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEecc-cc--ccccccccCCEEEEeCCC
Q psy13224 70 LEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTR-SG--GVGINLTGADTVVFYDSD 134 (160)
Q Consensus 70 l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~-~~--~~Gldl~~~~~vi~~~~~ 134 (160)
+.+.+...++.++.++...+.+.-...++.+. -... ++...+ .. +.-.++......+++|+.
T Consensus 55 l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~--~~~~-~~~d~~~~~~~~~~~~v~~~P~~~lid~~ 119 (142)
T 3ewl_A 55 FVEMVENGTLRVLAIYPDENREEWATKAVYMP--QGWI-VGWNKAGDIRTRQLYDIRATPTIYLLDGR 119 (142)
T ss_dssp HHHHHHHTSEEEEEEECSSCHHHHHHHHTTSC--TTCE-EEECTTCHHHHTTCSCCCSSSEEEEECTT
T ss_pred HHHHhccCCeEEEEEEecCCHHHHHHHHHHcC--CCcc-eeeCCccchhhHHHcCCCCCCeEEEECCC
Confidence 44555556788888877766554333333331 1222 332222 11 124456677778887753
No 286
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=23.87 E-value=2e+02 Score=20.36 Aligned_cols=64 Identities=11% Similarity=0.115 Sum_probs=39.6
Q ss_pred CCCCccccccCch-HHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHH
Q psy13224 27 FPDPRLIQYDCGK-LQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQ 92 (160)
Q Consensus 27 ~~~~~~~~~~~~K-~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~ 92 (160)
+.+...+.+..+. +- ..+.+.+.+.|.++++.....+..+.+.+.++..+-....+.+..+..+
T Consensus 30 l~gk~~lVTGas~GIG--~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 94 (276)
T 3r1i_A 30 LSGKRALITGASTGIG--KKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPD 94 (276)
T ss_dssp CTTCEEEEESTTSHHH--HHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHH
T ss_pred CCCCEEEEeCCCCHHH--HHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHH
Confidence 3444445544322 22 2344445566888888888777777777777776666667777766543
No 287
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=23.72 E-value=1.1e+02 Score=17.24 Aligned_cols=43 Identities=19% Similarity=0.352 Sum_probs=30.0
Q ss_pred eEEEEe-ccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 56 RVLIFT-QMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 56 k~lif~-~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
++++|+ .++..+..+...|+..++.+..++-. .+.+....+.+
T Consensus 7 ~v~~y~~~~C~~C~~~~~~L~~~~i~~~~vdv~--~~~~~~l~~~~ 50 (89)
T 2klx_A 7 EIILYTRPNCPYCKRARDLLDKKGVKYTDIDAS--TSLRQEMVQRA 50 (89)
T ss_dssp CEEEESCSCCTTTHHHHHHHHHHTCCEEEECSC--HHHHHHHHHHH
T ss_pred eEEEEECCCChhHHHHHHHHHHcCCCcEEEECC--HHHHHHHHHHh
Confidence 577776 44556788888888888888777665 44455555555
No 288
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=23.70 E-value=2.1e+02 Score=20.63 Aligned_cols=47 Identities=15% Similarity=0.100 Sum_probs=37.4
Q ss_pred eEEEEecc-------------HHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccC
Q psy13224 56 RVLIFTQM-------------TRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMD 103 (160)
Q Consensus 56 k~lif~~~-------------~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~ 103 (160)
..||+.+. ...++.|.+.|+..|+.+ ......+.++=.+.+++|...
T Consensus 34 ~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 34 MAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV-TVFPNLKSEEINKFIQQTAEM 93 (272)
T ss_dssp EEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHTS
T ss_pred EEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEE-EEecCcCHHHHHHHHHHHHHh
Confidence 67788764 557899999999999995 556678888888888888743
No 289
>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A*
Probab=23.59 E-value=1.5e+02 Score=22.41 Aligned_cols=73 Identities=15% Similarity=0.047 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCCeEEE-EeccHHHHHHHHHHHHhcCCeEEEEECCC-----CHHHHHHHHHHhccCCCceEEEEecccc
Q psy13224 43 LDVILRKLKAGGHRVLI-FTQMTRMLDVLEAFLNFHGHIYLRLDGTT-----KVDQRQVLMERFNMDARIFCFILSTRSG 116 (160)
Q Consensus 43 l~~ll~~~~~~~~k~li-f~~~~~~~~~l~~~l~~~~~~~~~~~g~~-----~~~~r~~~~~~f~~~~~~~vll~~~~~~ 116 (160)
+.++|++......++++ +|......+...+.+.+.|+ +..++|.. +.++|.+.+.......-..-+++++|+-
T Consensus 198 ~l~iL~e~g~~~~~vvi~H~~~~~~~~~a~~~l~~~G~-yI~f~g~~~~~~~~~~~ra~~l~~lv~~~p~drILleTDap 276 (363)
T 3ovg_A 198 VAKHLIGFGANPDKIQISHLNKNPDKYYYEKVIKETGV-TLCFDGPDRVKYYPDSLLAENIKYLVDKGLQKHITLSLDAG 276 (363)
T ss_dssp HHHHHHHHTCCGGGEEEECGGGSCCHHHHHHHHHHHCC-EEEECCTTCTTTCCHHHHHHHHHHHHHTTCGGGEEECCCCC
T ss_pred HHHHHHhcCCCCCcEEEEcCCCCCCHHHHHHHHHHCCc-EEEECCeeccccCChhHHHHHHHHHHHhcCCCeEEEeCCCC
Confidence 33666543222245555 55433334444555534564 46677643 3344555555554322233377777764
No 290
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=23.45 E-value=1.6e+02 Score=19.43 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHH---hcCCe
Q psy13224 42 SLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLN---FHGHI 80 (160)
Q Consensus 42 ~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~---~~~~~ 80 (160)
+|...++.....+.++.||+++.-..+.+...+. +.|++
T Consensus 63 Al~~al~~al~~~~~v~I~TDS~Yvi~~it~w~~~Wk~ngw~ 104 (165)
T 2lsn_A 63 AVEFACKKALKIPGPVLVITDSFYVAESANKELPYWKSNGFV 104 (165)
T ss_dssp HHHHHHHHHHHSSSCEEEEESCHHHHHHHHTHHHHHHHTTSC
T ss_pred HHHHHHHHHhcCCCeEEEEeChHHHHhhhhhhhhhheecccc
Confidence 3333444444556789999999887777766554 34554
No 291
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=23.43 E-value=1.6e+02 Score=21.86 Aligned_cols=39 Identities=10% Similarity=-0.050 Sum_probs=29.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhcCCe-EEEEECCCCHH
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNFHGHI-YLRLDGTTKVD 91 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~~ 91 (160)
.++.+++||.+-..+-.+.-.|+..|++ +..++|+.+.-
T Consensus 274 ~~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lYdGSWsEW 313 (327)
T 3utn_X 274 PSKPTICSCGTGVSGVIIKTALELAGVPNVRLYDGSWTEW 313 (327)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHHTTCCSEEEESSHHHHH
T ss_pred CCCCEEEECChHHHHHHHHHHHHHcCCCCceeCCCcHHHh
Confidence 3468999999877666666667888885 77888877653
No 292
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=23.39 E-value=1.9e+02 Score=20.09 Aligned_cols=41 Identities=12% Similarity=-0.099 Sum_probs=20.6
Q ss_pred HHhcCCCeEEEEeccH--HHHHHHHHHHHhcCCeEEEEECCCC
Q psy13224 49 KLKAGGHRVLIFTQMT--RMLDVLEAFLNFHGHIYLRLDGTTK 89 (160)
Q Consensus 49 ~~~~~~~k~lif~~~~--~~~~~l~~~l~~~~~~~~~~~g~~~ 89 (160)
...+.|-.++++.... +....+.+.+...++..+++.+...
T Consensus 33 ~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 75 (291)
T 3egc_A 33 EARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG 75 (291)
T ss_dssp HHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS
T ss_pred HHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3344566666665422 2223344445556666666655443
No 293
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=23.39 E-value=1.4e+02 Score=18.63 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=28.0
Q ss_pred HHHHHHHH---hcCCeEEEEECCCCHHHHHHHHHHhccC
Q psy13224 68 DVLEAFLN---FHGHIYLRLDGTTKVDQRQVLMERFNMD 103 (160)
Q Consensus 68 ~~l~~~l~---~~~~~~~~~~g~~~~~~r~~~~~~f~~~ 103 (160)
.|+.++++ ..|..+.+.+.......|....+.|+.+
T Consensus 90 ewikdfieeakergvevfvvynnkdddrrkeaqqefrsd 128 (162)
T 2l82_A 90 EWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSD 128 (162)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHhhhc
Confidence 45555554 5699988888888888899999999743
No 294
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=23.12 E-value=2e+02 Score=20.44 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=19.6
Q ss_pred HHHhcCCCeEEEEeccHH---HHHHHHHHHHhcCCeEEEEECCC
Q psy13224 48 RKLKAGGHRVLIFTQMTR---MLDVLEAFLNFHGHIYLRLDGTT 88 (160)
Q Consensus 48 ~~~~~~~~k~lif~~~~~---~~~~l~~~l~~~~~~~~~~~g~~ 88 (160)
+...+.|-.++++....+ ....+..+ ...++...++.+..
T Consensus 27 ~~a~~~g~~~~~~~~~~~~~~~~~~i~~~-~~~~vdgiIi~~~~ 69 (330)
T 3uug_A 27 KQLQEAGYKTDLQYADDDIPNQLSQIENM-VTKGVKVLVIASID 69 (330)
T ss_dssp HHHHHTTCEEEEEECTTCHHHHHHHHHHH-HHHTCSEEEECCSS
T ss_pred HHHHHcCCEEEEeeCCCCHHHHHHHHHHH-HHcCCCEEEEEcCC
Confidence 333445667766653322 12233333 33566766666544
No 295
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=23.11 E-value=88 Score=24.93 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=28.9
Q ss_pred CCeEEEEeccHHHHHHHHHHHHhcCCeEEEEEC-CCC
Q psy13224 54 GHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDG-TTK 89 (160)
Q Consensus 54 ~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g-~~~ 89 (160)
+.++++||..-.........|...|+++..+.| +..
T Consensus 322 ~~~ivv~c~~g~rs~~aa~~L~~~G~~v~~l~G~G~~ 358 (539)
T 1yt8_A 322 GARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSEA 358 (539)
T ss_dssp TCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCGG
T ss_pred CCeEEEEeCCCCcHHHHHHHHHHcCCeEEEecCCChH
Confidence 579999998766666677779999999889998 653
No 296
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=22.83 E-value=1.9e+02 Score=19.77 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=21.8
Q ss_pred HHHhcCCCeEEEEeccHH--HHHHHHHHHHhcCCeEEEEECCC
Q psy13224 48 RKLKAGGHRVLIFTQMTR--MLDVLEAFLNFHGHIYLRLDGTT 88 (160)
Q Consensus 48 ~~~~~~~~k~lif~~~~~--~~~~l~~~l~~~~~~~~~~~g~~ 88 (160)
+...+.|-.++++....+ ....+.+.+...++...++.+..
T Consensus 26 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 26 QGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp HHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred HHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 333445667776664322 22334445555677766666544
No 297
>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A
Probab=22.81 E-value=1.5e+02 Score=18.73 Aligned_cols=39 Identities=15% Similarity=0.080 Sum_probs=30.3
Q ss_pred HHHHHhcCC-CeEEEEeccHHHHHHHHHHHHhcCCeEEEE
Q psy13224 46 ILRKLKAGG-HRVLIFTQMTRMLDVLEAFLNFHGHIYLRL 84 (160)
Q Consensus 46 ll~~~~~~~-~k~lif~~~~~~~~~l~~~l~~~~~~~~~~ 84 (160)
.++.+...| .|+++-++..+....+.+..+..|+.+..+
T Consensus 39 ~l~~W~~~G~~Kvvlk~~~e~el~~L~~~a~~~gl~~~~I 78 (123)
T 1rzw_A 39 LRRKWLDEGQKKVVLKVKSLEELLGIKHKAESLGLVTGLV 78 (123)
T ss_dssp HHHHTGGGCSSEEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEE
Confidence 455565556 488889988888889999888889887655
No 298
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*
Probab=22.62 E-value=2.7e+02 Score=21.59 Aligned_cols=67 Identities=7% Similarity=-0.061 Sum_probs=48.6
Q ss_pred cccCchHHHHHHHHHHHhcCCC----eEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 34 QYDCGKLQSLDVILRKLKAGGH----RVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 34 ~~~~~K~~~l~~ll~~~~~~~~----k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
...|-|.+....++....+.|. ..||=+..-++...++..-...|+++.++-....+.++...+..|
T Consensus 136 ptGSfKdR~a~~~i~~a~~~G~l~~g~tVV~aSsGN~G~AlA~aaa~~Gi~~~IvmP~~~s~~k~~~l~~~ 206 (435)
T 1jbq_A 136 AGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRAL 206 (435)
T ss_dssp TTSBTHHHHHHHHHHHHHHHTCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhC
Confidence 3455699988888877655552 445545556778888888888899988877666667777788777
No 299
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=22.40 E-value=2.8e+02 Score=21.63 Aligned_cols=91 Identities=8% Similarity=-0.019 Sum_probs=47.7
Q ss_pred ccccCchHHHHH-HHHHHHhcC--CCeEEEEeccHHHHHHHHHHHHhc----CCeEEEEECCCCHHHHHHHHHHhccCCC
Q psy13224 33 IQYDCGKLQSLD-VILRKLKAG--GHRVLIFTQMTRMLDVLEAFLNFH----GHIYLRLDGTTKVDQRQVLMERFNMDAR 105 (160)
Q Consensus 33 ~~~~~~K~~~l~-~ll~~~~~~--~~k~lif~~~~~~~~~l~~~l~~~----~~~~~~~~g~~~~~~r~~~~~~f~~~~~ 105 (160)
..++++|..... -++..+... +.++|+.+.....+....+.+... ++......++.... .. ...
T Consensus 165 apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~ 235 (508)
T 3fho_A 165 SQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK-------GA--KID 235 (508)
T ss_dssp CCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC-------------------CCC
T ss_pred CCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc-------cc--cCC
Confidence 455789998743 444443322 348999999988877777766653 33333332222211 01 224
Q ss_pred ceEEEEeccccc-----cccccccCCEEEEeC
Q psy13224 106 IFCFILSTRSGG-----VGINLTGADTVVFYD 132 (160)
Q Consensus 106 ~~vll~~~~~~~-----~Gldl~~~~~vi~~~ 132 (160)
..++++++.... ..+++.+.+.||+=+
T Consensus 236 ~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDE 267 (508)
T 3fho_A 236 AQIVIGTPGTVMDLMKRRQLDARDIKVFVLDE 267 (508)
T ss_dssp CSEEEECHHHHHHHHHTTCSCCTTCCEEEECC
T ss_pred CCEEEECHHHHHHHHHcCCccccCCCEEEEec
Confidence 455666655432 244566677766644
No 300
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=22.35 E-value=2.1e+02 Score=20.14 Aligned_cols=65 Identities=9% Similarity=0.002 Sum_probs=31.9
Q ss_pred HHHHHHHhcCCCeEEEEeccH--HHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe
Q psy13224 44 DVILRKLKAGGHRVLIFTQMT--RMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS 112 (160)
Q Consensus 44 ~~ll~~~~~~~~k~lif~~~~--~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~ 112 (160)
..+-+...+.|..++++.... +....+.+.|...++.-+++.+.....+ ..+..+. . +..++++.
T Consensus 35 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~--~~~~~l~-~-~iPvV~i~ 101 (303)
T 3kke_A 35 SGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDD--DMLAAVL-E-GVPAVTIN 101 (303)
T ss_dssp HHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCH--HHHHHHH-T-TSCEEEES
T ss_pred HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCcH--HHHHHHh-C-CCCEEEEC
Confidence 333344445566777665432 2233444555566777666665443322 1344444 2 44445544
No 301
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=22.07 E-value=78 Score=24.57 Aligned_cols=43 Identities=14% Similarity=0.194 Sum_probs=34.4
Q ss_pred ccccCchHHH-HHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHH
Q psy13224 33 IQYDCGKLQS-LDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLN 75 (160)
Q Consensus 33 ~~~~~~K~~~-l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~ 75 (160)
..++|+|... +.-++..+...+.++||.+.+...+..+.+.+.
T Consensus 28 a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 28 LHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp CCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc
Confidence 4567899886 677777766677899999999998888877776
No 302
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=22.00 E-value=3.8e+02 Score=23.00 Aligned_cols=60 Identities=10% Similarity=-0.007 Sum_probs=44.6
Q ss_pred CeEEEEeccHHHHHHHHHHHHhc--CCeEEEEECCC--CHHHHHHHHHHhccCCCceEEEEecc
Q psy13224 55 HRVLIFTQMTRMLDVLEAFLNFH--GHIYLRLDGTT--KVDQRQVLMERFNMDARIFCFILSTR 114 (160)
Q Consensus 55 ~k~lif~~~~~~~~~l~~~l~~~--~~~~~~~~g~~--~~~~r~~~~~~f~~~~~~~vll~~~~ 114 (160)
.++=+++++-.....+...+... |++.++-.|+. ..-.-...++.|.+++..+++++...
T Consensus 655 G~VgiVSqSGal~~~i~~~~~~~g~G~S~~VsiGnd~~~d~~~~D~L~~l~~Dp~T~~Ivly~E 718 (829)
T 3pff_A 655 GSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGE 718 (829)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEE
T ss_pred CcEEEEechhHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCCHHHHHHHHhhCCCCCEEEEEEe
Confidence 47889999988888888888776 55555566655 23456778999998888888887755
No 303
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=21.94 E-value=1.1e+02 Score=20.27 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=23.2
Q ss_pred cCchHHHHHHHHHHHhcCCCeEEEEeccH
Q psy13224 36 DCGKLQSLDVILRKLKAGGHRVLIFTQMT 64 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~k~lif~~~~ 64 (160)
.++|...+.+++......+.+++++....
T Consensus 13 gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 13 YSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp TSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 57999999999988777788898876543
No 304
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=21.83 E-value=1.3e+02 Score=17.74 Aligned_cols=72 Identities=10% Similarity=0.082 Sum_probs=37.0
Q ss_pred ccHHHHHHHHHHHHhc-----CCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEeccccccccccccCCEEEEeCCC
Q psy13224 62 QMTRMLDVLEAFLNFH-----GHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSD 134 (160)
Q Consensus 62 ~~~~~~~~l~~~l~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~~~~~~~Gldl~~~~~vi~~~~~ 134 (160)
.++..+......|++. ++.++.++...+.++-.+..+.+.- +...++.-.......-+++.....++++|+.
T Consensus 35 ~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~i~~~P~~~~id~~ 111 (136)
T 1zzo_A 35 PWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPV-KTFTQLADTDGSVWANFGVTQQPAYAFVDPH 111 (136)
T ss_dssp TTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTC-TTSEEEECTTCHHHHHTTCCSSSEEEEECTT
T ss_pred CCChhHHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCC-CceEEEEcCCcHHHHHcCCCCCceEEEECCC
Confidence 4444455444444432 6788888877666655555555531 1222222112223333445566777777643
No 305
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=21.69 E-value=1.4e+02 Score=18.03 Aligned_cols=58 Identities=14% Similarity=0.216 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCC--CeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 43 LDVILRKLKAGG--HRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 43 l~~ll~~~~~~~--~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
|.+-++.+.++. ++++|.++....+....+.+...|+++..+-......+-..-....
T Consensus 38 lkkemkklaeeknfekiliisndkqllkemlelisklgykvflllqdqdeneleefkrki 97 (134)
T 2lci_A 38 LKKEMKKLAEEKNFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQDENELEEFKRKI 97 (134)
T ss_dssp HHHHHHHHHHCCSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCchhHHHHHHHHH
Confidence 333444444332 5888888877777777777777788877777776665544443333
No 306
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=21.57 E-value=3.5e+02 Score=22.68 Aligned_cols=84 Identities=12% Similarity=0.057 Sum_probs=49.1
Q ss_pred ccCchHHHHHHHHHHHh---cCCCeEEEEeccHHHHHHHHHHHHhc-CCeEEEEECCCCHHHHHHHHHHhc-------cC
Q psy13224 35 YDCGKLQSLDVILRKLK---AGGHRVLIFTQMTRMLDVLEAFLNFH-GHIYLRLDGTTKVDQRQVLMERFN-------MD 103 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~~~---~~~~k~lif~~~~~~~~~l~~~l~~~-~~~~~~~~g~~~~~~r~~~~~~f~-------~~ 103 (160)
.+.+|......++..+. ....++||.|.......|..++-+-. ++.+..++|.............+. ..
T Consensus 264 mGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~ 343 (800)
T 3mwy_W 264 MGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKT 343 (800)
T ss_dssp TTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CC
T ss_pred CCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhcccccccccc
Confidence 35689887777765542 34568899998655555544443333 677888888766444333322221 12
Q ss_pred CCceEEEEecccccc
Q psy13224 104 ARIFCFILSTRSGGV 118 (160)
Q Consensus 104 ~~~~vll~~~~~~~~ 118 (160)
....+++++.+.+..
T Consensus 344 ~~~dvvitTy~~l~~ 358 (800)
T 3mwy_W 344 MKFNVLLTTYEYILK 358 (800)
T ss_dssp CCCSEEEECTTHHHH
T ss_pred ccCCEEEecHHHHHh
Confidence 345577777776543
No 307
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=21.48 E-value=1.4e+02 Score=17.93 Aligned_cols=71 Identities=10% Similarity=0.048 Sum_probs=40.4
Q ss_pred cCCeEEEEECCCCHHHHHHHHHHhccC---CCceEEEEeccccc----cccccccCCEEEEeCCCCCcChhhHHHHHHHh
Q psy13224 77 HGHIYLRLDGTTKVDQRQVLMERFNMD---ARIFCFILSTRSGG----VGINLTGADTVVFYDSDWNPTMDAQAQDRCHR 149 (160)
Q Consensus 77 ~~~~~~~~~g~~~~~~r~~~~~~f~~~---~~~~vll~~~~~~~----~Gldl~~~~~vi~~~~~~~~~~~~Q~~gR~~R 149 (160)
..+..++++-..+...-...+...+.. +...+++++...-. ..+. .++... +.-|.++..+.+++.++.+
T Consensus 61 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~-~g~~~~--l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 61 PRPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYS-YSISSY--IVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp CCCSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHH-TTCSEE--EECCSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHH-CCCCEE--EeCCCCHHHHHHHHHHHHH
Confidence 567788888776655555666666533 34555665543211 1111 133333 3447788888888888755
Q ss_pred c
Q psy13224 150 I 150 (160)
Q Consensus 150 ~ 150 (160)
.
T Consensus 138 ~ 138 (149)
T 1k66_A 138 Y 138 (149)
T ss_dssp H
T ss_pred H
Confidence 3
No 308
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=21.38 E-value=1.5e+02 Score=18.27 Aligned_cols=91 Identities=15% Similarity=0.059 Sum_probs=49.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccC---CCceEEEEeccccc----cccccccC
Q psy13224 53 GGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMD---ARIFCFILSTRSGG----VGINLTGA 125 (160)
Q Consensus 53 ~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~---~~~~vll~~~~~~~----~Gldl~~~ 125 (160)
.|-.+..+.+..+ ..+.+....+..++++-..+..+-...+...+.. +...+++++...-. ..+. .++
T Consensus 30 ~g~~v~~~~~~~~----al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~-~g~ 104 (154)
T 3gt7_A 30 TGYQTEHVRNGRE----AVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLE-CGA 104 (154)
T ss_dssp TTCEEEEESSHHH----HHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHH-HCC
T ss_pred CCCEEEEeCCHHH----HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHH-CCC
Confidence 3556655544333 2334455677888888766655555555555432 34555665533211 1111 133
Q ss_pred CEEEEeCCCCCcChhhHHHHHHHhc
Q psy13224 126 DTVVFYDSDWNPTMDAQAQDRCHRI 150 (160)
Q Consensus 126 ~~vi~~~~~~~~~~~~Q~~gR~~R~ 150 (160)
+. ++.-|.++..+.+++.++.+.
T Consensus 105 ~~--~l~KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 105 DD--FITKPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp SE--EEESSCCHHHHHHHHHHHHHH
T ss_pred CE--EEeCCCCHHHHHHHHHHHHHH
Confidence 33 334577888888888887654
No 309
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=21.31 E-value=2.2e+02 Score=19.94 Aligned_cols=66 Identities=15% Similarity=0.066 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhc-cCCCceEEEEeccccc---------ccccccc-CCEEEEeC
Q psy13224 67 LDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFN-MDARIFCFILSTRSGG---------VGINLTG-ADTVVFYD 132 (160)
Q Consensus 67 ~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~-~~~~~~vll~~~~~~~---------~Gldl~~-~~~vi~~~ 132 (160)
.+-+.+.|++.++++....+....+.-...+..+- ..+....+++..+.++ .|+.+|. =-.|+-+|
T Consensus 149 ~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~~dv~vig~D 225 (297)
T 3rot_A 149 AYGIKTILQDKGIFFEELDVGTDPNQVQSRVKSYFKIHPETNIIFCLTSQALDPLGQMLLHPDRYDFNYQPQVYSFD 225 (297)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHSHHHHTCCCCCEEEEEC
T ss_pred HHHHHHHHHhcCCeEEEeecCCChHHHHHHHHHHHHhCCCCCEEEEcCCcchHHHHHHHHhcCCccCCCceEEEEeC
Confidence 45567778888999887777666555555555533 2344555776665443 5666554 44455555
No 310
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=21.21 E-value=2.5e+02 Score=20.72 Aligned_cols=46 Identities=15% Similarity=0.124 Sum_probs=37.3
Q ss_pred eEEEEecc-------------HHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhcc
Q psy13224 56 RVLIFTQM-------------TRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNM 102 (160)
Q Consensus 56 k~lif~~~-------------~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~ 102 (160)
..|||.+. ...++.|.+.|+..|+.+ .+....+..+=.+.+++|..
T Consensus 62 ~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~f~~ 120 (310)
T 2nn3_C 62 MAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV-TVFPNLKSEEINKFIQQTAE 120 (310)
T ss_dssp EEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHS
T ss_pred EEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHHH
Confidence 68888864 557899999999999995 55567888888888888864
No 311
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Probab=21.07 E-value=2.8e+02 Score=21.12 Aligned_cols=65 Identities=11% Similarity=-0.062 Sum_probs=49.0
Q ss_pred ccCchHHHHHHHHHH---HhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHh
Q psy13224 35 YDCGKLQSLDVILRK---LKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERF 100 (160)
Q Consensus 35 ~~~~K~~~l~~ll~~---~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f 100 (160)
+.|-|.+....++.. ..+.+ +.||=+..-++...++......|+++.++-+...+.++...+..+
T Consensus 123 tGS~K~R~a~~~i~~l~~a~~~g-~~Iv~assGNhG~AlA~aaa~~Gl~~~ivmp~~~~~~k~~~~~~~ 190 (389)
T 1wkv_A 123 SLSVKDRPAVEIISRLSRRVEKG-SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLL 190 (389)
T ss_dssp TSBTTHHHHHHHHHHHTTTSCTT-CEEEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHT
T ss_pred cCChHHHHHHHHHHHHHHHHhcC-CEEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHc
Confidence 456799998888876 33445 677777778888899999999999988877765555666666666
No 312
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=20.85 E-value=1.9e+02 Score=19.02 Aligned_cols=77 Identities=13% Similarity=0.178 Sum_probs=49.3
Q ss_pred hhcCCCCcccccc--CchHHHHHHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHh---cCCeEEEEECCCCHHHHHHHHH
Q psy13224 24 CTQFPDPRLIQYD--CGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNF---HGHIYLRLDGTTKVDQRQVLME 98 (160)
Q Consensus 24 ~~~~~~~~~~~~~--~~K~~~l~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~---~~~~~~~~~g~~~~~~r~~~~~ 98 (160)
...+++++++.++ -+-..-+.-+|+.....+++.+|.+...+- +.|....-. -.++++.+...-=-+.|...++
T Consensus 21 ~~~le~p~ILitdkKIs~i~~llP~LE~v~~~~~pLlIIAedveg-eaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~ 99 (145)
T 1srv_A 21 EAVLEDAFILIVEKKVSNVRELLPILEQVAQTGKPLLIIAEDVEG-EALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLK 99 (145)
T ss_dssp BEEEEEEEEEEESSEECCHHHHHHHHHHHHTTTCCEEEEESEECH-HHHHHHHHHHHTTSCCEEEEECCSSHHHHHHHHH
T ss_pred EEEeeccEEEEecccccCHHHHHHHHHHHHHHCCCEEEEecccch-hhhhhhhhhhhcccceEEEEeCCCcchhhHHHHH
Confidence 3344555555443 133556666777777788899999986553 455544432 3678888877666677777777
Q ss_pred Hhc
Q psy13224 99 RFN 101 (160)
Q Consensus 99 ~f~ 101 (160)
+..
T Consensus 100 DiA 102 (145)
T 1srv_A 100 DIA 102 (145)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 313
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=20.82 E-value=1.8e+02 Score=23.78 Aligned_cols=60 Identities=13% Similarity=0.126 Sum_probs=42.4
Q ss_pred ccccCchHHHHHHHH-HHHhcCCCeEEEEeccHHHHHHHHHHHH---hcCCeEEEEECCCCHHH
Q psy13224 33 IQYDCGKLQSLDVIL-RKLKAGGHRVLIFTQMTRMLDVLEAFLN---FHGHIYLRLDGTTKVDQ 92 (160)
Q Consensus 33 ~~~~~~K~~~l~~ll-~~~~~~~~k~lif~~~~~~~~~l~~~l~---~~~~~~~~~~g~~~~~~ 92 (160)
.+++|+|.......+ +.+...+.++++-+.....+....+.++ ..|+++..++|.....+
T Consensus 53 apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~ 116 (715)
T 2va8_A 53 SPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDD 116 (715)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCC
T ss_pred cCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCch
Confidence 445789998875544 4444467799999998877666666653 34888888999776543
No 314
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.77 E-value=56 Score=16.62 Aligned_cols=14 Identities=29% Similarity=0.223 Sum_probs=11.1
Q ss_pred CcChhhHHHHHHHh
Q psy13224 136 NPTMDAQAQDRCHR 149 (160)
Q Consensus 136 ~~~~~~Q~~gR~~R 149 (160)
+...+.|.++|+.|
T Consensus 3 tk~~l~qkI~kVdr 16 (42)
T 2l5g_B 3 SKEELIQNMDRVDR 16 (42)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 34578899999987
No 315
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=20.75 E-value=2.2e+02 Score=19.72 Aligned_cols=68 Identities=10% Similarity=-0.024 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCCeEEEEeccHH--HHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHhccCCCceEEEEe
Q psy13224 43 LDVILRKLKAGGHRVLIFTQMTR--MLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDARIFCFILS 112 (160)
Q Consensus 43 l~~ll~~~~~~~~k~lif~~~~~--~~~~l~~~l~~~~~~~~~~~g~~~~~~r~~~~~~f~~~~~~~vll~~ 112 (160)
+..+-+...+.|-.++++....+ ......+.+...++...++.+..+. .-...++... ..+..++++.
T Consensus 24 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~~~~~-~~~iPvV~~~ 93 (291)
T 3l49_A 24 YQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLD-VLNPWLQKIN-DAGIPLFTVD 93 (291)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHH-HHHHHHHHHH-HTTCCEEEES
T ss_pred HHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh-hhHHHHHHHH-HCCCcEEEec
Confidence 33344444456777777654322 2223334444567777777665432 2233444443 2334444443
No 316
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=20.71 E-value=1.5e+02 Score=17.85 Aligned_cols=38 Identities=8% Similarity=0.185 Sum_probs=24.6
Q ss_pred hcCCCCccccccCchHHHHHHHHHHHhcCCCeEEEEecc
Q psy13224 25 TQFPDPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQM 63 (160)
Q Consensus 25 ~~~~~~~~~~~~~~K~~~l~~ll~~~~~~~~k~lif~~~ 63 (160)
+.....+.....+-++..+..+|++...-. .+.+|++.
T Consensus 25 P~l~k~KflV~~~~t~~~~~~~lRkrL~l~-alFlyvn~ 62 (96)
T 1wz3_A 25 PILKQSKFKVSGSDKFANVIDFLRRQLHSD-SLFVYVNS 62 (96)
T ss_dssp CCCSCCEEEEETTSBTHHHHHHHHHHHTCS-SCEEEEEE
T ss_pred CcccccEEEeCCCCcHHHHHHHHHHhcCCc-eEEEEECC
Confidence 344555556666777888888887766554 66666664
No 317
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A
Probab=20.70 E-value=1.4e+02 Score=17.50 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcCCCeEEEEe-ccHHHHHHHHHHHHhcCCeEEEEECCCCH---HHHHHHHHHhc
Q psy13224 40 LQSLDVILRKLKAGGHRVLIFT-QMTRMLDVLEAFLNFHGHIYLRLDGTTKV---DQRQVLMERFN 101 (160)
Q Consensus 40 ~~~l~~ll~~~~~~~~k~lif~-~~~~~~~~l~~~l~~~~~~~~~~~g~~~~---~~r~~~~~~f~ 101 (160)
+..+.+.++.+.+. +++++|. .++..+..+...|+..+..+..++-.... +.+..+.+.|.
T Consensus 6 ~~~~~~~~~~~~~~-~~vv~f~a~~C~~C~~~~~~l~~~~~~~~~v~v~~~~~~~~~~~~l~~~~~ 70 (116)
T 2e7p_A 6 LDAALKKAKELASS-APVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTG 70 (116)
T ss_dssp HHHHHHHHHHHHTS-SSEEEEECTTCHHHHHHHHHHHHHTCCCEEEEGGGSTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcC-CCEEEEECCCChhHHHHHHHHHHcCCCeEEEEccCCCChHHHHHHHHHHhC
Confidence 34455566655544 4555554 56678889999998877766655544332 22345666664
No 318
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=20.34 E-value=2.2e+02 Score=21.91 Aligned_cols=39 Identities=13% Similarity=0.226 Sum_probs=31.0
Q ss_pred cCchHHHHHHHHHHHhcCCC-eEEEEeccHHHHHHHHHHH
Q psy13224 36 DCGKLQSLDVILRKLKAGGH-RVLIFTQMTRMLDVLEAFL 74 (160)
Q Consensus 36 ~~~K~~~l~~ll~~~~~~~~-k~lif~~~~~~~~~l~~~l 74 (160)
+++|...+..++..+...+. ++++.+.+...++.+.+.+
T Consensus 55 GTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 55 GTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 57999999999998887776 7888888877777666544
No 319
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=20.30 E-value=2.2e+02 Score=19.51 Aligned_cols=47 Identities=9% Similarity=0.061 Sum_probs=33.0
Q ss_pred HHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCHHH
Q psy13224 46 ILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQ 92 (160)
Q Consensus 46 ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~ 92 (160)
+.+.+.+.|.++++.....+..+.+.+.++..+-....+.+..+..+
T Consensus 25 ~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 71 (253)
T 3qiv_A 25 YAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPE 71 (253)
T ss_dssp HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHH
T ss_pred HHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHH
Confidence 44445566778888888777777777777777767777777766543
No 320
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=20.22 E-value=1.7e+02 Score=18.33 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCCeEEEEeccHHHHHHHHHHHHhcCCeEEEEECCCCH-HHHHHHHHHhccCCCc
Q psy13224 44 DVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKV-DQRQVLMERFNMDARI 106 (160)
Q Consensus 44 ~~ll~~~~~~~~k~lif~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~-~~r~~~~~~f~~~~~~ 106 (160)
.++|+.+.+.|.++.|.++... ..+...++..|+.. .+++..+. .--..+++.+.-++..
T Consensus 42 ~~~l~~l~~~g~~~~i~T~~~~--~~~~~~l~~~gl~~-~~~~~kp~~~~~~~~~~~~~~~~~~ 102 (162)
T 2p9j_A 42 GIGIKLLQKMGITLAVISGRDS--APLITRLKELGVEE-IYTGSYKKLEIYEKIKEKYSLKDEE 102 (162)
T ss_dssp HHHHHHHHTTTCEEEEEESCCC--HHHHHHHHHTTCCE-EEECC--CHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHCCCEEEEEeCCCc--HHHHHHHHHcCCHh-hccCCCCCHHHHHHHHHHcCCCHHH
Confidence 4677777777888888887654 34556666667764 34554433 3334566666433333
Done!