RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13224
(160 letters)
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 80.4 bits (197), Expect = 3e-19
Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Query: 23 MCTQFPDPRLIQYDCGKLQSLDVILRKLK-AGGHRVLIFTQMTRMLDVLEAFLNFHGHIY 81
+ + GK+ LD IL + +V++ + T+ LD+ E ++Y
Sbjct: 86 FPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLY 145
Query: 82 LRLDGTTKVDQRQVLMERFNMDARI-FCFILSTRSGGVGINLTGADTVVFYDSDWNPTMD 140
+RLDGT + +R ++ERFN + F F+LS+++GG G+NL GA+ +V +D DWNP D
Sbjct: 146 VRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAND 205
Query: 141 AQAQDRCHRIGQTRDVHIYR 160
QA R R GQ + +IYR
Sbjct: 206 EQAMARVWRDGQKKTCYIYR 225
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 66.8 bits (162), Expect = 2e-14
Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 11/167 (6%)
Query: 2 EAAMTAELRPKLRLLHPVTSAMCTQFPDPRLIQYDCGKLQSLDVILRKL--KAGGHRVLI 59
EA + K + + I D K+ L I+R+ + ++++
Sbjct: 107 EAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIV 166
Query: 60 FTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDA------RIFCFILST 113
FT + L G R G + + L +R F +++T
Sbjct: 167 FTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVAT 226
Query: 114 RSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYR 160
G G+++ D VVFY+ + Q R R G+ +
Sbjct: 227 SVGEEGLDVPEVDLVVFYEPVPSAIRSIQ---RRGRTGRHMPGRVII 270
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 244
Score = 62.4 bits (150), Expect = 4e-13
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 1/139 (0%)
Query: 23 MCTQFPDPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHI-Y 81
GK+ I+ + G ++ IFTQ M ++ + +
Sbjct: 54 HPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEV 113
Query: 82 LRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDA 141
L G +R ++ +F + + +LS ++GG GINLT A+ V+ +D WNP ++
Sbjct: 114 PFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVED 173
Query: 142 QAQDRCHRIGQTRDVHIYR 160
QA DR +RIGQTR+V +++
Sbjct: 174 QATDRVYRIGQTRNVIVHK 192
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 55.3 bits (132), Expect = 1e-10
Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 10/140 (7%)
Query: 22 AMCTQFPDPRLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIY 81
A+ R+ K++ L IL + + +++IFT+ ++ +
Sbjct: 63 ALRAWEEARRIAFNSKNKIRKLREILERHR--KDKIIIFTRHNELVYRISKVFLIPA--- 117
Query: 82 LRLDGTTKVDQRQVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDA 141
+ T ++R+ ++E F F I+S++ GI++ A+ V +
Sbjct: 118 --ITHRTSREEREEILEGFRTG--RFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYI 173
Query: 142 QAQDRCHRIGQT-RDVHIYR 160
Q R R + ++ +Y
Sbjct: 174 QRLGRILRPSKGKKEAVLYE 193
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 45.1 bits (106), Expect = 7e-07
Identities = 13/125 (10%), Positives = 30/125 (24%), Gaps = 17/125 (13%)
Query: 31 RLIQYDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKV 90
R ++ +S+ + L+ G +I+ + + + L I G
Sbjct: 2 RNVEDVAVNDESISTLSSILEKLGTGGIIYARTGEEAEEIYESLKNKFRI-----GIVTA 56
Query: 91 DQRQVLMERFNMDARIFCFILSTRSG-GVGINLT-GADTVVFYDSDWNPTMDAQAQDRCH 148
++ + + G++L VF
Sbjct: 57 TKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFR----------V 106
Query: 149 RIGQT 153
I
Sbjct: 107 TIEDI 111
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 42.6 bits (99), Expect = 3e-06
Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 2/125 (1%)
Query: 35 YDCGKLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQ 94
+ + + + + R LK L+F + R E + + Q Q
Sbjct: 9 VEVNENERFEALCRLLKNKEFYGLVFCKTKRD--TKELASMLRDIGFKAGAIHGDLSQSQ 66
Query: 95 VLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTR 154
+ +++T GI++ + V+ Y NP R R G+
Sbjct: 67 REKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKG 126
Query: 155 DVHIY 159
Sbjct: 127 KAISI 131
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 39.5 bits (92), Expect = 6e-05
Identities = 26/120 (21%), Positives = 36/120 (30%), Gaps = 19/120 (15%)
Query: 45 VILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRL-----------DGTTKVDQR 93
+ L +K G R LIF + D L A L G + G V
Sbjct: 29 IPLEVIKGG--RHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVAT 86
Query: 94 QVLMERFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT 153
LM F D + + V +L T+ + A R R G+T
Sbjct: 87 DALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTT------LPQDAVSRTQRRGRT 140
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 35.7 bits (81), Expect = 8e-04
Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 4/121 (3%)
Query: 39 KLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLME 98
K + L + + + +IF R ++ L L + +R +M+
Sbjct: 14 KYECLTDLYDSISVT--QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMK 71
Query: 99 RFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHI 158
F ++ST GI++ V+ YD N R R G+
Sbjct: 72 EFRS--GSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAIN 129
Query: 159 Y 159
+
Sbjct: 130 F 130
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 27.3 bits (60), Expect = 0.71
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 62 QMTRMLDVLEAFL-NFHGHIYLRLDGTTK---VDQRQVLMERFNMDARIFCFILSTRSGG 117
++ +++ V++ + L +D +T V Q ++ E + + T GG
Sbjct: 112 ELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGG 171
Query: 118 VGINLT 123
V ++
Sbjct: 172 VIFSVA 177
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 26.4 bits (57), Expect = 1.4
Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 4/121 (3%)
Query: 39 KLQSLDVILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLME 98
K +L + L + +IF R +D L + + G +R+ +M+
Sbjct: 21 KFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMK 78
Query: 99 RFNMDARIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHI 158
F A T G+++ ++ YD N + R R G+
Sbjct: 79 EFRSGASRVLIS--TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAIN 136
Query: 159 Y 159
+
Sbjct: 137 F 137
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 25.7 bits (56), Expect = 2.7
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 7/84 (8%)
Query: 46 ILRKLKAGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTKVDQRQVLMERFNMDAR 105
+ A F R +V+ A L G + L+ T + +
Sbjct: 28 GHDWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTI---KQKK-- 82
Query: 106 IFCFILSTRSGGVGINLTGADTVV 129
FIL+T +G NL + V+
Sbjct: 83 -PDFILATDIAEMGANL-CVERVL 104
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 24.0 bits (51), Expect = 9.5
Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 4/74 (5%)
Query: 52 AGGHRVLIFTQMTRMLDVLEAFLNFHGHIYLRLDGTTK---VDQRQVLMERFNMDARIFC 108
AG H + + + + + L +D + D + + I
Sbjct: 103 AGRHGYGEEAALLEEMKNIYEAIKPD-EVTLVIDASIGQKAYDLASKFNQASKIGTIIIT 161
Query: 109 FILSTRSGGVGINL 122
+ T GG ++
Sbjct: 162 KMDGTAKGGGALSA 175
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.329 0.141 0.432
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 608,594
Number of extensions: 26310
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 20
Length of query: 160
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,336,656
Effective search space: 109605792
Effective search space used: 109605792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.1 bits)