Query psy13226
Match_columns 218
No_of_seqs 2 out of 4
Neff 1.4
Searched_HMMs 29240
Date Fri Aug 16 23:22:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13226.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13226hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p8c_D Wiskott-aldrich syndrom 34.5 18 0.00062 31.1 2.1 26 189-214 169-194 (279)
2 2i7u_A Four-alpha-helix bundle 4.7 1.9E+02 0.0065 20.4 0.4 7 209-215 30-36 (62)
3 2zvf_A Alanyl-tRNA synthetase; 2.2 2.8E+02 0.0096 20.0 -0.9 7 208-214 134-140 (171)
4 3g98_A Alanyl-tRNA synthetase; 2.2 4E+02 0.014 18.4 -0.1 7 208-214 77-83 (111)
5 3c9p_A Uncharacterized protein 1.9 8.6E+02 0.029 19.1 1.5 23 147-177 23-46 (123)
6 1hnr_A H-NS; histone-like prot 1.6 6.4E+02 0.022 16.3 0.2 11 170-180 17-27 (47)
7 2l93_A DNA-binding protein H-N 1.5 6.8E+02 0.023 16.8 0.1 7 171-177 18-24 (55)
8 1jzp_A Skeletal dihydropydrine 1.5 1.5E+03 0.05 13.5 1.6 16 190-205 4-22 (26)
9 3n3k_B Ubiquitin; hydrolase, p 1.4 8.4E+02 0.029 14.8 0.4 9 206-214 75-83 (85)
10 2l92_A Histone family protein 1.3 7.8E+02 0.027 16.5 0.1 7 171-177 15-21 (50)
No 1
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=34.55 E-value=18 Score=31.12 Aligned_cols=26 Identities=35% Similarity=0.691 Sum_probs=11.5
Q ss_pred hhHHHHHHHhhhhhccCCCCCCCCCC
Q psy13226 189 REKEEEEKKKNRKRKKDNNLGGGGGG 214 (218)
Q Consensus 189 rekeeeekkknrkrkkdnnlgggggg 214 (218)
.+.-..+|.|.|++||++.-|||.||
T Consensus 169 ~k~~~k~krk~~~~~~~~~~~~~~~~ 194 (279)
T 3p8c_D 169 TEDKRKEKRKQKQKNLDRGGSGGSGG 194 (279)
T ss_dssp HHHHHHHHHHHHHTTCC---------
T ss_pred HHHHHHHHhhcccccccCCCCCCCCC
Confidence 34445567778888887766664343
No 2
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=4.66 E-value=1.9e+02 Score=20.38 Aligned_cols=7 Identities=100% Similarity=2.053 Sum_probs=3.2
Q ss_pred CCCCCCC
Q psy13226 209 GGGGGGE 215 (218)
Q Consensus 209 gggggge 215 (218)
||||||+
T Consensus 30 gggggge 36 (62)
T 2i7u_A 30 GGGGGGE 36 (62)
T ss_dssp SCSSSCH
T ss_pred CCCchHH
Confidence 4444443
No 3
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=2.21 E-value=2.8e+02 Score=19.96 Aligned_cols=7 Identities=57% Similarity=1.166 Sum_probs=3.0
Q ss_pred CCCCCCC
Q psy13226 208 LGGGGGG 214 (218)
Q Consensus 208 lgggggg 214 (218)
+||+|||
T Consensus 134 ~gGkGGG 140 (171)
T 2zvf_A 134 AKGSGGG 140 (171)
T ss_dssp HTEECCB
T ss_pred cCCCCCC
Confidence 3444444
No 4
>3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 1.85A {Aquifex aeolicus}
Probab=2.19 E-value=4e+02 Score=18.41 Aligned_cols=7 Identities=86% Similarity=1.706 Sum_probs=3.9
Q ss_pred CCCCCCC
Q psy13226 208 LGGGGGG 214 (218)
Q Consensus 208 lgggggg 214 (218)
+||+|||
T Consensus 77 ~gGkGGG 83 (111)
T 3g98_A 77 LKGGGGG 83 (111)
T ss_dssp TTBCCEE
T ss_pred cCCCcCC
Confidence 5555555
No 5
>3c9p_A Uncharacterized protein SP1917; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 1.96A {Streptococcus pneumoniae}
Probab=1.92 E-value=8.6e+02 Score=19.07 Aligned_cols=23 Identities=48% Similarity=0.547 Sum_probs=15.5
Q ss_pred HHHhhccchh-hhHhhhcchhhhhhhhccccc
Q psy13226 147 KQERKGQKME-VKEERQGQKMRIIRTLTGRGR 177 (218)
Q Consensus 147 ~~ER~GQ~~~-~~EE~~GQ~~riirtltgrgr 177 (218)
+-||+|-|.+ +| .||+.|||...
T Consensus 23 KaEkKGRTk~Evd--------~vI~WLTGy~~ 46 (123)
T 3c9p_A 23 KVERKGGKAESVH--------QVTSWLTGYEV 46 (123)
T ss_dssp HHHHTTCCHHHHH--------HHHHHHHCCCH
T ss_pred HHHHcCCcHHHHH--------HHHHHHhcCCH
Confidence 5677776643 33 48999999653
No 6
>1hnr_A H-NS; histone-like protein H1, DNA-binding protein; NMR {Escherichia coli} SCOP: a.155.1.1 PDB: 1hns_A
Probab=1.62 E-value=6.4e+02 Score=16.27 Aligned_cols=11 Identities=45% Similarity=0.785 Sum_probs=7.8
Q ss_pred hhhcccccccc
Q psy13226 170 RTLTGRGRERG 180 (218)
Q Consensus 170 rtltgrgrerg 180 (218)
.|-|||||...
T Consensus 17 ~TWtGrGr~P~ 27 (47)
T 1hnr_A 17 KTWTGQGRTPA 27 (47)
T ss_dssp EECCTTSSCCS
T ss_pred ccccCCCCCCH
Confidence 37889888643
No 7
>2l93_A DNA-binding protein H-NS; at HOOK; NMR {Salmonella typhimurium}
Probab=1.50 E-value=6.8e+02 Score=16.83 Aligned_cols=7 Identities=71% Similarity=1.128 Sum_probs=0.0
Q ss_pred hhccccc
Q psy13226 171 TLTGRGR 177 (218)
Q Consensus 171 tltgrgr 177 (218)
|-|||||
T Consensus 18 TWtGrGR 24 (55)
T 2l93_A 18 TWTGQGR 24 (55)
T ss_dssp EECSCSS
T ss_pred cccCCCC
No 8
>1jzp_A Skeletal dihydropydrine receptor; alpha helical peptide, DHPR, D-isomer, signaling protein; NMR {Synthetic} SCOP: j.68.1.1
Probab=1.45 E-value=1.5e+03 Score=13.45 Aligned_cols=16 Identities=38% Similarity=0.572 Sum_probs=0.0
Q ss_pred hHHHHHHHhhhh--h-ccC
Q psy13226 190 EKEEEEKKKNRK--R-KKD 205 (218)
Q Consensus 190 ekeeeekkknrk--r-kkd 205 (218)
+|+.++.++.+| | .++
T Consensus 4 qKekeEe~kr~k~~r~~p~ 22 (26)
T 1jzp_A 4 QKAKAEERKRRKMSRGLXX 22 (26)
T ss_pred HHHHHHHHHHHHHHHhccc
No 9
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=1.40 E-value=8.4e+02 Score=14.76 Aligned_cols=9 Identities=67% Similarity=1.302 Sum_probs=0.0
Q ss_pred CCCCCCCCC
Q psy13226 206 NNLGGGGGG 214 (218)
Q Consensus 206 nnlgggggg 214 (218)
..+||+|+|
T Consensus 75 rl~GG~g~~ 83 (85)
T 3n3k_B 75 KLRGGGGGG 83 (85)
T ss_dssp CCC------
T ss_pred eccCCCCCC
No 10
>2l92_A Histone family protein nucleoid-structuring prote; H-NS, at HOOK, DNA binding protein; NMR {Burkholderia vietnamiensis}
Probab=1.33 E-value=7.8e+02 Score=16.52 Aligned_cols=7 Identities=71% Similarity=1.232 Sum_probs=0.0
Q ss_pred hhccccc
Q psy13226 171 TLTGRGR 177 (218)
Q Consensus 171 tltgrgr 177 (218)
|-|||||
T Consensus 15 TWsGRGR 21 (50)
T 2l92_A 15 TWSGRGR 21 (50)
T ss_dssp EECSCSS
T ss_pred eecCCCC
Done!