Query psy13226
Match_columns 218
No_of_seqs 2 out of 4
Neff 1.4
Searched_HMMs 13730
Date Fri Aug 16 23:22:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13226.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13226hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k47a2 d.58.26.4 (A:195-329) 3.1 1.9E+02 0.014 18.8 0.9 7 208-214 97-103 (135)
2 d1hnra_ a.155.1.1 (A:) H1 prot 2.7 1.6E+02 0.012 17.9 0.2 11 169-179 16-26 (47)
3 d2p8ta1 a.4.5.72 (A:14-82) Hyp 2.6 1.3E+02 0.0092 19.5 -0.5 20 160-179 25-44 (69)
4 d1kvka2 d.58.26.3 (A:226-394) 2.0 3.1E+02 0.023 18.5 0.9 6 209-214 108-113 (169)
5 d1kkha2 d.58.26.3 (A:181-317) 1.6 3.3E+02 0.024 18.2 0.4 6 209-214 100-105 (137)
6 d1b8ta1 g.39.1.3 (A:1-35) Cyst 1.5 4.3E+02 0.031 15.4 0.8 6 206-211 2-7 (35)
7 d1zyma1 a.60.10.1 (A:22-144) E 1.5 3.5E+02 0.026 17.3 0.3 8 167-174 115-122 (123)
8 d2nsfa2 d.106.1.2 (A:161-240) 1.2 5.2E+02 0.038 17.2 0.8 17 163-179 50-66 (80)
9 d1hh2p3 d.52.3.1 (P:277-344) T 1.2 5E+02 0.036 16.1 0.5 14 162-175 45-58 (68)
10 d2asba3 d.52.3.1 (A:263-329) T 1.0 6.1E+02 0.045 15.6 0.5 14 162-175 44-57 (67)
No 1
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}
Probab=3.06 E-value=1.9e+02 Score=18.78 Aligned_cols=7 Identities=57% Similarity=1.184 Sum_probs=3.0
Q ss_pred CCCCCCC
Q psy13226 208 LGGGGGG 214 (218)
Q Consensus 208 lgggggg 214 (218)
+|+||||
T Consensus 97 ~GaGgGG 103 (135)
T d1k47a2 97 SGAGGGD 103 (135)
T ss_dssp CSSCSSS
T ss_pred ccCcCCC
Confidence 3444443
No 2
>d1hnra_ a.155.1.1 (A:) H1 protein (H-NS) {Escherichia coli [TaxId: 562]}
Probab=2.74 E-value=1.6e+02 Score=17.88 Aligned_cols=11 Identities=45% Similarity=0.752 Sum_probs=8.0
Q ss_pred hhhhccccccc
Q psy13226 169 IRTLTGRGRER 179 (218)
Q Consensus 169 irtltgrgrer 179 (218)
..|-|||||-.
T Consensus 16 ~~tWTGrGR~P 26 (47)
T d1hnra_ 16 TKTWTGQGRTP 26 (47)
T ss_dssp CEECCTTSSCC
T ss_pred cceeecCCcCC
Confidence 35789999854
No 3
>d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=2.62 E-value=1.3e+02 Score=19.49 Aligned_cols=20 Identities=25% Similarity=0.114 Sum_probs=14.9
Q ss_pred hhhcchhhhhhhhccccccc
Q psy13226 160 ERQGQKMRIIRTLTGRGRER 179 (218)
Q Consensus 160 E~~GQ~~riirtltgrgrer 179 (218)
+..|-.+|++||++..-++.
T Consensus 25 ~~L~l~Er~vRte~~~Lk~~ 44 (69)
T d2p8ta1 25 ERLELGEGSVRTLLRKLSHL 44 (69)
T ss_dssp HHHTCCHHHHHHHHHHHHHT
T ss_pred HHcCCcHHHHHHHHHHHHHC
Confidence 45788899999988765543
No 4
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=1.97 E-value=3.1e+02 Score=18.46 Aligned_cols=6 Identities=83% Similarity=1.858 Sum_probs=2.9
Q ss_pred CCCCCC
Q psy13226 209 GGGGGG 214 (218)
Q Consensus 209 gggggg 214 (218)
|+|+||
T Consensus 108 GAGgGG 113 (169)
T d1kvka2 108 GAGGGG 113 (169)
T ss_dssp SSCSSS
T ss_pred CCCCCC
Confidence 445554
No 5
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=1.61 E-value=3.3e+02 Score=18.23 Aligned_cols=6 Identities=83% Similarity=1.858 Sum_probs=2.6
Q ss_pred CCCCCC
Q psy13226 209 GGGGGG 214 (218)
Q Consensus 209 gggggg 214 (218)
|+|+||
T Consensus 100 GAGgGG 105 (137)
T d1kkha2 100 GAGGGG 105 (137)
T ss_dssp SSSSSE
T ss_pred cCCCCc
Confidence 444444
No 6
>d1b8ta1 g.39.1.3 (A:1-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=1.50 E-value=4.3e+02 Score=15.40 Aligned_cols=6 Identities=67% Similarity=1.221 Sum_probs=4.1
Q ss_pred CCCCCC
Q psy13226 206 NNLGGG 211 (218)
Q Consensus 206 nnlggg 211 (218)
.|||||
T Consensus 2 pn~ggg 7 (35)
T d1b8ta1 2 PNWGGG 7 (35)
T ss_dssp CCCCCC
T ss_pred CccCCC
Confidence 377776
No 7
>d1zyma1 a.60.10.1 (A:22-144) Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain {Escherichia coli [TaxId: 562]}
Probab=1.45 E-value=3.5e+02 Score=17.33 Aligned_cols=8 Identities=38% Similarity=0.983 Sum_probs=3.8
Q ss_pred hhhhhhcc
Q psy13226 167 RIIRTLTG 174 (218)
Q Consensus 167 riirtltg 174 (218)
|||+.|+|
T Consensus 115 Rll~~L~G 122 (123)
T d1zyma1 115 RLLRNILG 122 (123)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhcC
Confidence 44444444
No 8
>d2nsfa2 d.106.1.2 (A:161-240) Micothiol-dependent maleylpyruvate isomerase {Corynebacterium glutamicum [TaxId: 1718]}
Probab=1.24 E-value=5.2e+02 Score=17.24 Aligned_cols=17 Identities=35% Similarity=0.622 Sum_probs=12.3
Q ss_pred cchhhhhhhhccccccc
Q psy13226 163 GQKMRIIRTLTGRGRER 179 (218)
Q Consensus 163 GQ~~riirtltgrgrer 179 (218)
|----|.|-+||||-.+
T Consensus 50 G~La~VVrwaaGRGa~g 66 (80)
T d2nsfa2 50 GSLAGIVRYAAGRGSDG 66 (80)
T ss_dssp ECHHHHHHHHTTSCSTT
T ss_pred ccHHHHHHHHhcCCccc
Confidence 44556889999998643
No 9
>d1hh2p3 d.52.3.1 (P:277-344) Transcription factor NusA, C-terminal domains {Thermotoga maritima [TaxId: 2336]}
Probab=1.16 E-value=5e+02 Score=16.06 Aligned_cols=14 Identities=43% Similarity=0.622 Sum_probs=10.5
Q ss_pred hcchhhhhhhhccc
Q psy13226 162 QGQKMRIIRTLTGR 175 (218)
Q Consensus 162 ~GQ~~riirtltgr 175 (218)
-||.-|+...|||+
T Consensus 45 ~G~NvrLas~Ltg~ 58 (68)
T d1hh2p3 45 GGQNARLAAKLTGW 58 (68)
T ss_dssp GGHHHHHHHHHHSC
T ss_pred CcchHHHHHHHHCC
Confidence 47777888888875
No 10
>d2asba3 d.52.3.1 (A:263-329) Transcription factor NusA, C-terminal domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=0.96 E-value=6.1e+02 Score=15.58 Aligned_cols=14 Identities=43% Similarity=0.679 Sum_probs=10.7
Q ss_pred hcchhhhhhhhccc
Q psy13226 162 QGQKMRIIRTLTGR 175 (218)
Q Consensus 162 ~GQ~~riirtltgr 175 (218)
-||.-|+...|||.
T Consensus 44 ~G~NvrLas~Ltg~ 57 (67)
T d2asba3 44 EGQNARLAARLTGW 57 (67)
T ss_dssp GGHHHHHHHHHHSC
T ss_pred CceeHHHHHHHHCC
Confidence 47778888888875
Done!