RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13226
(218 letters)
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 49.7 bits (119), Expect = 2e-07
Identities = 14/195 (7%), Positives = 52/195 (26%), Gaps = 15/195 (7%)
Query: 13 RIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEE 72
Q + + + +E E+ + +RI+ +R+ + + ++
Sbjct: 831 NSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQK 890
Query: 73 RQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQK 132
+++ + + + G + Q + E Q + + +
Sbjct: 891 YNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSIL 950
Query: 133 MEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIIRTLTGRGRERGREREEGREREKE 192
++ E + + + + + + E E
Sbjct: 951 AQLTELNYNGVPELTERKDTFFAQQWTGVKSSA---------------ETYKNTLLAELE 995
Query: 193 EEEKKKNRKRKKDNN 207
+K ++ ++
Sbjct: 996 RLQKIEDLHHHHHHH 1010
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 48.2 bits (115), Expect = 7e-07
Identities = 27/208 (12%), Positives = 79/208 (37%), Gaps = 3/208 (1%)
Query: 1 MEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQ 60
++ + + + + K + ++ + + K V + ++M K+
Sbjct: 845 LQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKR 904
Query: 61 ERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQ 120
E K K+E + + +K+ I E K +++ K + Q K K +E+ + +
Sbjct: 905 ELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQ-NKEYKSLLEKMNNLEITYSTETE 963
Query: 121 KMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIIRTLTGRGRERG 180
K+R ER E + + + +++E + E+ + + + + I + +
Sbjct: 964 KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT--EKKTIEEWADKYKHET 1021
Query: 181 REREEGREREKEEEEKKKNRKRKKDNNL 208
+ + + + +K ++ ++
Sbjct: 1022 EQLVSELKEQNTLLKTEKEELNRRIHDQ 1049
Score = 47.4 bits (113), Expect = 1e-06
Identities = 36/200 (18%), Positives = 81/200 (40%), Gaps = 6/200 (3%)
Query: 5 EERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKG 64
++ + + K V + ++M K+E K K+E + + +K+ I E K
Sbjct: 871 QKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKI 930
Query: 65 QKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKM-- 122
+++ K + Q K K +E+ + +K+R ER E + + +
Sbjct: 931 MQLQRKIDEQ-NKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSL 989
Query: 123 --RIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMR-IIRTLTGRGRER 179
I + RK E++ ++ K + + +++ + + Q ++ L R ++
Sbjct: 990 QEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049
Query: 180 GREREEGREREKEEEEKKKN 199
+E E E++ EE K+
Sbjct: 1050 AKEITETMEKKLVEETKQLE 1069
Score = 44.7 bits (106), Expect = 1e-05
Identities = 28/193 (14%), Positives = 75/193 (38%), Gaps = 7/193 (3%)
Query: 22 KMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIK 81
++ + + + + K + ++ + + K V + ++M K
Sbjct: 844 ALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAK 903
Query: 82 QERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQG 141
+E K K+E + + +K+ I E K +++ K + Q K K +E+ +
Sbjct: 904 RELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQ-NKEYKSLLEKMNNLEITYSTET 962
Query: 142 QKMR------IKQERKGQKMEVKEERQGQKMRIIRTLTGRGRERGREREEGREREKEEEE 195
+K+R E + + + +++ +R + + + EE ++ K E E
Sbjct: 963 EKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022
Query: 196 KKKNRKRKKDNNL 208
+ + ++++ L
Sbjct: 1023 QLVSELKEQNTLL 1035
Score = 44.7 bits (106), Expect = 1e-05
Identities = 37/194 (19%), Positives = 78/194 (40%), Gaps = 3/194 (1%)
Query: 2 EVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQE 61
V + ++M K+E K K+E + + +K+ I E K +++ K + Q K
Sbjct: 890 IVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQ-NKEYKSLL 948
Query: 62 RKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQK 121
K +E+ + +K+R ER + E + + ++ QE + + + Q +K
Sbjct: 949 EKMNNLEITYSTETEKLRSDVERL-RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007
Query: 122 MRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIIRTLTGRGRERGR 181
I++ K E ++ K + + +K E+ Q I T+ + E +
Sbjct: 1008 KTIEEWADKYKHETEQLVSELKEQNTLLKT-EKEELNRRIHDQAKEITETMEKKLVEETK 1066
Query: 182 EREEGREREKEEEE 195
+ E E+ +
Sbjct: 1067 QLELDLNDERLRYQ 1080
Score = 43.2 bits (102), Expect = 4e-05
Identities = 28/168 (16%), Positives = 74/168 (44%), Gaps = 7/168 (4%)
Query: 1 MEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQ 60
+E + + +K+ I E K +++ K + Q K K +E+ + +K+R
Sbjct: 911 IEARSVERYKKLHIGLENKIMQLQRKIDEQ-NKEYKSLLEKMNNLEITYSTETEKLRSDV 969
Query: 61 ERKGQKMEVKEERQGQKM----RIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEE 116
ER E + + + I + RK E++ ++ K + + +++ + +
Sbjct: 970 ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELK 1029
Query: 117 RQGQKMRIKQERKGQKME--VKEERQGQKMRIKQERKGQKMEVKEERQ 162
Q ++ ++E +++ KE + + ++ +E K ++++ +ER
Sbjct: 1030 EQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERL 1077
Score = 33.2 bits (76), Expect = 0.067
Identities = 17/151 (11%), Positives = 57/151 (37%)
Query: 54 QKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEV 113
+ + + K +R + Q + + ++ +G +R K + ++ +
Sbjct: 808 CYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKS 867
Query: 114 KEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIIRTLT 173
++ + + + + ++ Q R+ +R+ +K++++ + ++ L
Sbjct: 868 IIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLE 927
Query: 174 GRGRERGREREEGREREKEEEEKKKNRKRKK 204
+ + R+ +E + K EK N +
Sbjct: 928 NKIMQLQRKIDEQNKEYKSLLEKMNNLEITY 958
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 38.3 bits (88), Expect = 0.002
Identities = 18/167 (10%), Positives = 58/167 (34%), Gaps = 5/167 (2%)
Query: 5 EERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKG 64
+ + I + + + +R Q+ R + ER+ + + E+ +++ +
Sbjct: 655 QRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSM 714
Query: 65 QKMEVKEERQGQKM-----RIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQG 119
+ + RI+ E + ++K + + + ER + E++
Sbjct: 715 AVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYAR 774
Query: 120 QKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKM 166
++ ++ + Q V+ ++ + + + V K+
Sbjct: 775 AQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKL 821
Score = 35.6 bits (81), Expect = 0.012
Identities = 17/155 (10%), Positives = 58/155 (37%), Gaps = 6/155 (3%)
Query: 1 MEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQ 60
+ + +R Q+ R + ER+ + + E+ +++ + + + R +
Sbjct: 673 AKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEA 732
Query: 61 ERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQ 120
R ++ E + ++K + + E + ER + ++ ++E++ + Q
Sbjct: 733 AR------IEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQ 786
Query: 121 KMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKM 155
++ ++ + E + + + K+
Sbjct: 787 LANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKL 821
Score = 34.4 bits (78), Expect = 0.027
Identities = 25/203 (12%), Positives = 65/203 (32%), Gaps = 5/203 (2%)
Query: 2 EVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQK-MRIKQ 60
E+ E+ + + R E Q+ +R Q + I
Sbjct: 607 EMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITT 666
Query: 61 ERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQ 120
+ + + +R Q+ R + ER+ + + E+ R + E
Sbjct: 667 NSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKA----RKELLELEAMSMAVESTGNA 722
Query: 121 KMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIIRTLTGRGRERG 180
K + + ++E + K++ + + E++ ++ ++M +I E
Sbjct: 723 KAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVS 782
Query: 181 REREEGREREKEEEEKKKNRKRK 203
+ ++ K+ +E +
Sbjct: 783 KAQQLANVEAKKFKEMTEALGPG 805
Score = 33.6 bits (76), Expect = 0.042
Identities = 23/198 (11%), Positives = 62/198 (31%), Gaps = 2/198 (1%)
Query: 10 QKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEV 69
K + R E G + + + Q + + + ++ +
Sbjct: 592 HKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTR 651
Query: 70 KEERQGQKMRIKQERKGQKMEVKEE--RQGQKMRIKQERKGQKMEVKEERQGQKMRIKQE 127
++ ++ I+ Q+ K E R Q+ R + ER+ + + E+ +++ +
Sbjct: 652 DALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEA 711
Query: 128 RKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIIRTLTGRGRERGREREEGR 187
+ + R + R + V + + + I T R + E
Sbjct: 712 MSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELI 771
Query: 188 EREKEEEEKKKNRKRKKD 205
+ E + ++ +
Sbjct: 772 YARAQLELEVSKAQQLAN 789
Score = 29.0 bits (64), Expect = 1.3
Identities = 20/179 (11%), Positives = 57/179 (31%), Gaps = 2/179 (1%)
Query: 32 QKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEV 91
K + R E G + + + Q + + + ++ +
Sbjct: 592 HKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTR 651
Query: 92 KEERQGQKMRIKQERKGQKMEVKEE--RQGQKMRIKQERKGQKMEVKEERQGQKMRIKQE 149
++ ++ I+ Q+ K E R Q+ R + ER+ + + E+ +++ +
Sbjct: 652 DALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEA 711
Query: 150 RKGQKMEVKEERQGQKMRIIRTLTGRGRERGREREEGREREKEEEEKKKNRKRKKDNNL 208
+ + R + + + + E E + + K+ ++ L
Sbjct: 712 MSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMEL 770
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 37.1 bits (86), Expect = 0.003
Identities = 28/203 (13%), Positives = 87/203 (42%), Gaps = 4/203 (1%)
Query: 1 MEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQ 60
++ +ERQ + +E + + ++ EE+ + +++ E + + + + +
Sbjct: 866 LQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQEL 925
Query: 61 ERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQ 120
E +ME R ++ Q+ + +K +++++ + ++++E + +++ E+
Sbjct: 926 EEILHEME---ARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA-ARQKLQLEKVTA 981
Query: 121 KMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIIRTLTGRGRERG 180
+IK+ + + + K R E + + + +K + + L +
Sbjct: 982 DGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMI 1041
Query: 181 REREEGREREKEEEEKKKNRKRK 203
E E ++E++ ++ + KRK
Sbjct: 1042 SELEVRLKKEEKSRQELEKIKRK 1064
Score = 34.0 bits (78), Expect = 0.035
Identities = 25/197 (12%), Positives = 85/197 (43%), Gaps = 6/197 (3%)
Query: 10 QKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEV 69
+ + + K ++++ +ERQ + +E + + ++ EE+ + +++ E +
Sbjct: 853 TRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAE 912
Query: 70 KEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERK 129
+ + + + E +ME + E + ++ + + + +KM+ ++ ++ ++E
Sbjct: 913 EMRVRLAAKKQELEEILHEMEARIEEE-EERSQQLQAEKKKMQ-QQMLDLEEQLEEEEAA 970
Query: 130 GQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIIRTLTGRGRERGREREEGRER 189
QK+++++ K++ ++ + + E++ + + + L R + E E+
Sbjct: 971 RQKLQLEKVTADGKIKKMED----DILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEK 1026
Query: 190 EKEEEEKKKNRKRKKDN 206
K + K +
Sbjct: 1027 AKNLTKLKNKHESMISE 1043
Score = 33.7 bits (77), Expect = 0.047
Identities = 27/213 (12%), Positives = 90/213 (42%), Gaps = 6/213 (2%)
Query: 1 MEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQ 60
+ + ++ K + + + EE + + KQE + E+ E R ++ Q
Sbjct: 886 KHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEM-EARIEEEEERSQ 944
Query: 61 ERKGQKMEVKEERQGQKMRIKQ-ERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQG 119
+ + +K +++++ + ++++ E QK+++++ K++ ++ + +
Sbjct: 945 QLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK 1004
Query: 120 QKMRIKQERKGQKMEVKEE----RQGQKMRIKQERKGQKMEVKEERQGQKMRIIRTLTGR 175
++ +++ + EE + K++ K E ++EV+ +++ + + + + +
Sbjct: 1005 ERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK 1064
Query: 176 GRERGREREEGREREKEEEEKKKNRKRKKDNNL 208
+ E + + + K + KK+ L
Sbjct: 1065 LEGESSDLHEQIAELQAQIAELKAQLAKKEEEL 1097
Score = 32.5 bits (74), Expect = 0.11
Identities = 33/195 (16%), Positives = 88/195 (45%), Gaps = 11/195 (5%)
Query: 2 EVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQE 61
++ +ER+ + R+ E ++ + K++ K E ++EV+ +++ +K R + E
Sbjct: 1001 KLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKE-EKSRQELE 1059
Query: 62 RKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQK 121
+ +K+E + +++ E + Q E+K + ++ ++ + E ++ K
Sbjct: 1060 KIKRKLEGESSDLHEQIA---ELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALK 1116
Query: 122 MRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIIRTLTGRGRERGR 181
+E + +++E+ + +K + K QK ++ EE + K + T
Sbjct: 1117 K--IRELESHISDLQEDLESEKAARNKAEK-QKRDLSEELEALKTELEDT----LDTTAT 1169
Query: 182 EREEGREREKEEEEK 196
++E K++++K
Sbjct: 1170 QQELRGSDYKDDDDK 1184
Score = 31.7 bits (72), Expect = 0.16
Identities = 26/209 (12%), Positives = 92/209 (44%), Gaps = 10/209 (4%)
Query: 5 EERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQ-ERKGQKMEVKEERQGQKMRIKQERK 63
E R ++ Q+ + +K +++++ + ++++ E QK+++++ K++ ++
Sbjct: 933 EARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDI 992
Query: 64 GQKMEVKEERQGQKMRIKQERK--GQKMEVKEERQGQKMRIKQERKGQKMEVKEE-RQGQ 120
+ + ++ +++ + +EE+ ++K + + E++ ++ +
Sbjct: 993 LIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1052
Query: 121 KMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIIRTLTGRGRERG 180
K R + E+ +K+E + +++ Q + + +++ + + L ++
Sbjct: 1053 KSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKN 1112
Query: 181 REREEGRERE------KEEEEKKKNRKRK 203
++ RE E +E+ E +K + K
Sbjct: 1113 NALKKIRELESHISDLQEDLESEKAARNK 1141
Score = 27.9 bits (62), Expect = 2.9
Identities = 18/152 (11%), Positives = 59/152 (38%), Gaps = 3/152 (1%)
Query: 53 GQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKME 112
+ + + + + K ++++ +ERQ + +E + + +
Sbjct: 830 SFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQ 889
Query: 113 VKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIIRTL 172
+ EE+ + +++ E + + + + + E +ME R ++ + L
Sbjct: 890 LCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEME---ARIEEEEERSQQL 946
Query: 173 TGRGRERGREREEGREREKEEEEKKKNRKRKK 204
++ ++ + E+ +EEE ++ + +K
Sbjct: 947 QAEKKKMQQQMLDLEEQLEEEEAARQKLQLEK 978
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 26.2 bits (57), Expect = 8.7
Identities = 15/119 (12%), Positives = 48/119 (40%), Gaps = 1/119 (0%)
Query: 84 RKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQKMRIKQERKGQKMEVKEERQGQK 143
K + K + K+ +++ KEE Q + + K +++ E+ +K
Sbjct: 308 FKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEK 367
Query: 144 M-RIKQERKGQKMEVKEERQGQKMRIIRTLTGRGRERGREREEGREREKEEEEKKKNRK 201
R+K+ + +K +++++++ + + + + + + ++ K +K
Sbjct: 368 FDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEKK 426
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.306 0.126 0.318
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,982,995
Number of extensions: 177783
Number of successful extensions: 1235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 948
Number of HSP's successfully gapped: 250
Length of query: 218
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 128
Effective length of database: 4,188,903
Effective search space: 536179584
Effective search space used: 536179584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 55 (25.4 bits)