Query psy13227
Match_columns 247
No_of_seqs 330 out of 1891
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 23:22:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0122|consensus 100.0 6.6E-69 1.4E-73 460.9 20.4 224 4-246 42-270 (270)
2 PF12353 eIF3g: Eukaryotic tra 100.0 1.6E-39 3.4E-44 260.0 8.6 95 4-98 26-127 (128)
3 PLN03134 glycine-rich RNA-bind 99.8 1.9E-18 4.1E-23 141.2 12.5 85 162-246 31-115 (144)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.6E-16 3.4E-21 145.4 14.1 83 164-246 268-350 (352)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 2E-16 4.4E-21 144.7 11.4 82 165-246 3-84 (352)
6 TIGR01659 sex-lethal sex-letha 99.7 7.4E-16 1.6E-20 142.4 11.4 85 161-245 103-187 (346)
7 PF00076 RRM_1: RNA recognitio 99.6 1.9E-15 4.1E-20 106.2 10.4 70 168-238 1-70 (70)
8 KOG0121|consensus 99.6 8.6E-16 1.9E-20 121.6 7.2 81 162-242 33-113 (153)
9 KOG4207|consensus 99.6 1.4E-15 3.1E-20 129.0 6.7 83 161-243 9-91 (256)
10 TIGR01645 half-pint poly-U bin 99.6 1.7E-14 3.7E-19 141.1 11.5 84 163-246 202-285 (612)
11 PF14259 RRM_6: RNA recognitio 99.6 3.7E-14 8.1E-19 100.6 10.1 70 168-238 1-70 (70)
12 TIGR01659 sex-lethal sex-letha 99.5 3.4E-14 7.3E-19 131.4 11.1 82 164-245 192-275 (346)
13 TIGR01645 half-pint poly-U bin 99.5 3.6E-14 7.9E-19 138.8 10.3 81 163-243 105-185 (612)
14 KOG0148|consensus 99.5 3E-14 6.6E-19 125.1 7.4 82 165-246 62-143 (321)
15 KOG0107|consensus 99.5 5.5E-14 1.2E-18 116.6 8.5 79 162-245 7-85 (195)
16 TIGR01628 PABP-1234 polyadenyl 99.5 7.7E-14 1.7E-18 136.0 11.0 79 166-244 1-79 (562)
17 PLN03120 nucleic acid binding 99.5 1.3E-13 2.8E-18 121.8 10.4 75 165-243 4-78 (260)
18 KOG0149|consensus 99.5 5.1E-14 1.1E-18 121.5 7.1 80 162-242 9-88 (247)
19 KOG0113|consensus 99.5 1.2E-13 2.7E-18 122.6 9.5 83 162-244 98-180 (335)
20 TIGR01642 U2AF_lg U2 snRNP aux 99.5 2E-13 4.4E-18 131.0 11.8 82 163-244 293-374 (509)
21 PLN03213 repressor of silencin 99.5 9.7E-14 2.1E-18 130.2 9.2 77 165-245 10-88 (759)
22 TIGR01622 SF-CC1 splicing fact 99.5 2.3E-13 5.1E-18 129.0 11.0 79 165-243 186-264 (457)
23 KOG0130|consensus 99.5 1.2E-13 2.6E-18 110.4 7.2 84 160-243 67-150 (170)
24 KOG0145|consensus 99.5 1.7E-13 3.6E-18 120.0 8.8 84 163-246 39-122 (360)
25 COG0724 RNA-binding proteins ( 99.5 3.4E-13 7.3E-18 115.0 10.0 79 165-243 115-193 (306)
26 TIGR01628 PABP-1234 polyadenyl 99.5 3.1E-13 6.7E-18 131.8 11.0 83 162-245 282-364 (562)
27 smart00362 RRM_2 RNA recogniti 99.5 6E-13 1.3E-17 92.0 9.3 72 167-240 1-72 (72)
28 KOG0125|consensus 99.5 4.5E-13 9.7E-18 120.4 10.6 81 163-245 94-174 (376)
29 TIGR01648 hnRNP-R-Q heterogene 99.5 4E-13 8.7E-18 131.1 11.1 80 163-243 56-136 (578)
30 KOG0126|consensus 99.4 1.8E-14 4E-19 120.1 0.6 80 162-241 32-111 (219)
31 smart00360 RRM RNA recognition 99.4 7.9E-13 1.7E-17 91.0 8.3 71 170-240 1-71 (71)
32 TIGR01622 SF-CC1 splicing fact 99.4 7.2E-13 1.6E-17 125.7 10.8 81 163-244 87-167 (457)
33 KOG0111|consensus 99.4 8.2E-14 1.8E-18 119.4 3.9 83 163-245 8-90 (298)
34 KOG0145|consensus 99.4 1.2E-12 2.5E-17 114.8 10.7 82 165-246 278-359 (360)
35 PLN03121 nucleic acid binding 99.4 2.3E-12 5E-17 112.5 10.0 74 164-241 4-77 (243)
36 cd00590 RRM RRM (RNA recogniti 99.4 5.6E-12 1.2E-16 87.6 10.0 74 167-241 1-74 (74)
37 KOG0131|consensus 99.4 6.6E-13 1.4E-17 110.8 5.9 83 161-243 5-87 (203)
38 KOG0148|consensus 99.4 2.7E-12 5.8E-17 113.0 9.0 79 161-245 160-238 (321)
39 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 9.3E-12 2E-16 119.7 13.6 79 162-245 272-351 (481)
40 KOG0108|consensus 99.3 1.9E-12 4.1E-17 122.4 8.0 81 166-246 19-99 (435)
41 KOG0117|consensus 99.3 5.7E-12 1.2E-16 117.2 10.7 81 163-243 81-162 (506)
42 TIGR01648 hnRNP-R-Q heterogene 99.3 6.8E-12 1.5E-16 122.5 10.8 74 164-245 232-307 (578)
43 KOG0146|consensus 99.3 2.1E-12 4.5E-17 113.6 5.6 87 160-246 280-366 (371)
44 smart00361 RRM_1 RNA recogniti 99.3 1.5E-11 3.3E-16 88.0 8.5 62 179-240 2-70 (70)
45 KOG0114|consensus 99.3 1.5E-11 3.3E-16 94.3 8.6 79 163-244 16-94 (124)
46 KOG0127|consensus 99.3 1E-11 2.2E-16 117.9 8.7 81 165-246 117-197 (678)
47 KOG0105|consensus 99.3 5.9E-12 1.3E-16 105.6 5.9 77 164-243 5-81 (241)
48 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 2.2E-11 4.8E-16 117.1 10.3 75 165-245 2-78 (481)
49 PF13893 RRM_5: RNA recognitio 99.3 3.4E-11 7.4E-16 82.2 8.1 56 182-242 1-56 (56)
50 KOG0144|consensus 99.2 6.3E-12 1.4E-16 116.5 5.4 83 163-246 122-207 (510)
51 KOG0117|consensus 99.2 1.6E-11 3.5E-16 114.2 7.6 73 166-246 260-332 (506)
52 KOG0127|consensus 99.2 1.6E-11 3.5E-16 116.5 7.5 82 165-246 5-86 (678)
53 KOG0124|consensus 99.2 2.7E-11 5.8E-16 110.5 5.0 78 164-241 112-189 (544)
54 KOG0147|consensus 99.2 3.9E-11 8.4E-16 114.0 6.1 76 168-243 281-356 (549)
55 KOG0144|consensus 99.2 1.1E-10 2.5E-15 108.2 8.8 82 163-244 32-116 (510)
56 KOG4208|consensus 99.1 2.4E-10 5.3E-15 97.2 8.0 84 162-245 46-130 (214)
57 KOG0415|consensus 99.1 1.6E-10 3.5E-15 105.0 7.0 83 162-244 236-318 (479)
58 KOG0131|consensus 99.1 1.4E-10 2.9E-15 97.1 5.4 83 163-245 94-177 (203)
59 KOG0109|consensus 99.0 2.8E-10 6.2E-15 101.2 5.9 72 166-245 3-74 (346)
60 KOG0153|consensus 99.0 1.6E-09 3.5E-14 98.3 8.3 82 157-244 220-302 (377)
61 KOG0123|consensus 99.0 1.8E-09 3.8E-14 100.9 8.7 75 167-244 78-152 (369)
62 KOG0123|consensus 98.9 2.1E-09 4.6E-14 100.3 8.2 75 166-246 2-76 (369)
63 KOG4661|consensus 98.9 5.6E-09 1.2E-13 100.0 10.9 84 162-245 402-485 (940)
64 KOG4206|consensus 98.9 3E-09 6.5E-14 91.6 8.1 77 166-245 10-90 (221)
65 TIGR01642 U2AF_lg U2 snRNP aux 98.9 3.2E-09 6.9E-14 102.0 9.2 73 163-242 173-257 (509)
66 KOG4212|consensus 98.9 5.3E-09 1.1E-13 97.5 9.2 76 166-242 45-121 (608)
67 KOG0132|consensus 98.9 4.3E-09 9.3E-14 103.6 7.7 74 166-245 422-495 (894)
68 KOG0124|consensus 98.9 5.7E-09 1.2E-13 95.5 7.4 81 163-243 208-288 (544)
69 KOG0146|consensus 98.9 4.7E-09 1E-13 92.7 6.6 79 164-243 18-99 (371)
70 KOG0109|consensus 98.8 3E-09 6.4E-14 94.7 4.8 75 163-245 76-150 (346)
71 KOG0533|consensus 98.8 1E-08 2.3E-13 90.3 8.2 80 165-245 83-162 (243)
72 KOG0110|consensus 98.8 2.4E-09 5.1E-14 104.5 4.3 83 164-246 612-694 (725)
73 KOG0151|consensus 98.8 1.2E-08 2.6E-13 99.7 8.9 83 162-244 171-256 (877)
74 KOG0110|consensus 98.8 1.7E-08 3.6E-13 98.7 7.9 79 165-243 515-596 (725)
75 KOG1457|consensus 98.8 1E-07 2.2E-12 82.4 11.6 84 162-245 31-118 (284)
76 KOG4205|consensus 98.8 7.1E-09 1.5E-13 94.5 4.6 82 163-245 4-85 (311)
77 PF04059 RRM_2: RNA recognitio 98.7 2.2E-07 4.7E-12 71.1 9.3 79 166-244 2-86 (97)
78 KOG0226|consensus 98.6 7.4E-08 1.6E-12 84.5 5.7 80 161-240 186-265 (290)
79 KOG4212|consensus 98.6 1.1E-07 2.5E-12 88.8 6.8 76 162-242 533-608 (608)
80 KOG4209|consensus 98.6 9.1E-08 2E-12 84.0 5.9 81 162-243 98-178 (231)
81 KOG4205|consensus 98.6 1.1E-07 2.4E-12 86.7 6.4 82 163-245 95-176 (311)
82 KOG1548|consensus 98.5 2E-07 4.4E-12 84.8 7.6 81 162-243 131-219 (382)
83 KOG0116|consensus 98.5 3.6E-07 7.8E-12 86.4 7.5 83 162-245 285-367 (419)
84 KOG0106|consensus 98.4 2.5E-07 5.5E-12 80.1 4.3 71 166-244 2-72 (216)
85 KOG4660|consensus 98.3 4.5E-07 9.7E-12 86.8 4.1 71 163-238 73-143 (549)
86 KOG4454|consensus 98.3 3.3E-07 7.1E-12 79.0 2.0 77 164-242 8-84 (267)
87 KOG1190|consensus 98.2 1.7E-05 3.8E-10 73.8 11.7 76 165-245 297-373 (492)
88 KOG0120|consensus 98.2 1.3E-06 2.9E-11 83.8 3.7 83 163-245 287-369 (500)
89 KOG1995|consensus 98.1 7.7E-06 1.7E-10 74.9 6.5 85 162-246 63-155 (351)
90 KOG4211|consensus 98.0 1.5E-05 3.3E-10 75.6 8.1 77 163-243 8-84 (510)
91 KOG0147|consensus 97.9 4.4E-06 9.5E-11 80.0 1.9 79 163-242 177-255 (549)
92 KOG4210|consensus 97.9 9.1E-06 2E-10 73.6 2.8 81 165-246 184-265 (285)
93 PF11608 Limkain-b1: Limkain b 97.7 0.00015 3.2E-09 54.0 6.7 68 166-243 3-75 (90)
94 KOG1457|consensus 97.7 3.6E-05 7.8E-10 66.8 4.0 66 164-233 209-274 (284)
95 KOG4211|consensus 97.7 8.3E-05 1.8E-09 70.7 6.6 76 165-242 103-179 (510)
96 COG5175 MOT2 Transcriptional r 97.6 0.00019 4.1E-09 65.7 6.9 80 164-243 113-201 (480)
97 KOG4206|consensus 97.5 0.00031 6.7E-09 60.9 7.6 76 163-243 144-220 (221)
98 KOG4849|consensus 97.5 6.5E-05 1.4E-09 68.9 3.4 74 166-239 81-156 (498)
99 PF08777 RRM_3: RNA binding mo 97.5 0.00032 7E-09 54.3 6.5 59 166-230 2-60 (105)
100 KOG3152|consensus 97.4 9.6E-05 2.1E-09 65.2 3.3 73 164-236 73-157 (278)
101 KOG0106|consensus 97.4 0.00019 4.1E-09 62.3 4.0 70 164-241 98-167 (216)
102 KOG2314|consensus 97.3 0.00047 1E-08 66.7 6.4 75 165-240 58-139 (698)
103 KOG0105|consensus 97.3 0.0013 2.7E-08 55.9 8.0 61 166-233 116-176 (241)
104 KOG4307|consensus 97.3 0.0015 3.3E-08 64.7 9.5 75 166-241 868-943 (944)
105 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00093 2E-08 45.4 5.5 52 166-224 2-53 (53)
106 KOG1456|consensus 97.2 0.0095 2.1E-07 55.4 13.4 79 161-244 283-362 (494)
107 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0026 5.6E-08 49.0 6.9 78 164-243 5-90 (100)
108 KOG1365|consensus 97.0 0.0013 2.8E-08 61.2 6.1 74 166-240 281-357 (508)
109 KOG1190|consensus 96.9 0.0018 3.9E-08 60.7 6.0 78 163-244 412-490 (492)
110 KOG1548|consensus 96.9 0.0038 8.3E-08 57.4 7.6 77 163-243 263-350 (382)
111 PF08675 RNA_bind: RNA binding 96.8 0.0076 1.7E-07 44.8 7.1 54 167-229 11-64 (87)
112 KOG0120|consensus 96.5 0.0077 1.7E-07 58.3 7.3 63 181-243 425-490 (500)
113 KOG1456|consensus 96.5 0.019 4.1E-07 53.5 9.2 75 166-245 121-199 (494)
114 KOG2193|consensus 96.4 0.0026 5.6E-08 59.9 3.0 73 166-245 2-76 (584)
115 PF08952 DUF1866: Domain of un 96.3 0.025 5.4E-07 46.3 8.3 70 166-244 28-106 (146)
116 KOG2202|consensus 96.0 0.0031 6.8E-08 55.8 1.7 62 180-242 83-145 (260)
117 KOG0128|consensus 96.0 0.0024 5.3E-08 64.4 1.0 78 166-244 737-814 (881)
118 KOG2416|consensus 96.0 0.0082 1.8E-07 58.7 4.5 77 161-243 440-520 (718)
119 KOG0129|consensus 95.8 0.03 6.5E-07 53.9 7.3 64 163-227 257-326 (520)
120 KOG0128|consensus 95.8 0.00049 1.1E-08 69.3 -5.1 71 163-233 665-735 (881)
121 KOG4307|consensus 95.6 0.019 4.2E-07 57.2 5.1 79 162-241 431-510 (944)
122 KOG1365|consensus 95.5 0.072 1.6E-06 49.9 8.4 70 163-234 159-232 (508)
123 KOG1855|consensus 95.5 0.011 2.4E-07 55.8 3.0 69 163-231 229-310 (484)
124 KOG0129|consensus 95.4 0.038 8.2E-07 53.3 6.5 64 163-226 368-432 (520)
125 KOG0112|consensus 95.3 0.021 4.5E-07 58.3 4.3 77 163-245 453-531 (975)
126 KOG2068|consensus 95.2 0.0076 1.6E-07 55.2 1.0 80 166-245 78-163 (327)
127 PF03467 Smg4_UPF3: Smg-4/UPF3 94.8 0.061 1.3E-06 45.4 5.5 80 163-242 5-95 (176)
128 KOG2135|consensus 94.7 0.026 5.7E-07 53.9 3.2 76 163-245 370-446 (526)
129 PF10309 DUF2414: Protein of u 94.7 0.18 3.8E-06 35.5 6.6 54 166-227 6-62 (62)
130 KOG0115|consensus 94.7 0.038 8.2E-07 49.1 4.0 63 166-229 32-94 (275)
131 KOG4676|consensus 93.8 0.1 2.3E-06 48.9 5.1 76 167-242 9-87 (479)
132 KOG1996|consensus 93.8 0.2 4.4E-06 45.5 6.7 63 180-242 301-364 (378)
133 PF07576 BRAP2: BRCA1-associat 93.3 1 2.2E-05 35.2 9.1 67 166-234 13-81 (110)
134 KOG4660|consensus 92.9 0.16 3.4E-06 49.5 5.0 83 163-245 359-473 (549)
135 KOG2253|consensus 92.4 0.2 4.4E-06 49.7 5.0 81 140-240 26-106 (668)
136 PF03880 DbpA: DbpA RNA bindin 92.3 0.76 1.7E-05 32.9 6.8 60 174-242 10-74 (74)
137 PF15023 DUF4523: Protein of u 92.0 0.79 1.7E-05 37.6 7.1 74 162-243 83-160 (166)
138 PF13696 zf-CCHC_2: Zinc knuck 91.9 0.075 1.6E-06 32.4 0.9 19 77-95 8-27 (32)
139 PF04847 Calcipressin: Calcipr 91.9 0.39 8.4E-06 40.9 5.6 61 179-245 9-71 (184)
140 KOG4285|consensus 91.6 0.86 1.9E-05 41.6 7.6 63 166-236 198-260 (350)
141 KOG0112|consensus 91.0 0.053 1.2E-06 55.4 -0.7 78 164-242 371-448 (975)
142 KOG4210|consensus 89.5 0.21 4.6E-06 45.3 2.0 80 163-242 86-165 (285)
143 PF00098 zf-CCHC: Zinc knuckle 89.0 0.18 3.8E-06 26.6 0.7 16 78-93 1-17 (18)
144 PF13917 zf-CCHC_3: Zinc knuck 88.6 0.18 3.8E-06 32.7 0.6 18 77-94 4-22 (42)
145 KOG0804|consensus 84.6 3.1 6.8E-05 39.9 6.8 68 165-234 74-142 (493)
146 PF11767 SET_assoc: Histone ly 84.5 5.5 0.00012 28.2 6.5 55 176-239 11-65 (66)
147 KOG4574|consensus 79.5 1.4 3E-05 45.3 2.5 71 169-245 302-374 (1007)
148 KOG2591|consensus 77.3 8.5 0.00018 38.1 7.0 59 163-228 173-233 (684)
149 PF14787 zf-CCHC_5: GAG-polypr 72.9 1.4 3E-05 27.5 0.4 20 79-98 4-24 (36)
150 COG0724 RNA-binding proteins ( 62.8 9.2 0.0002 31.8 3.6 72 161-232 221-292 (306)
151 smart00343 ZnF_C2HC zinc finge 61.2 3.7 7.9E-05 23.2 0.6 16 79-94 1-17 (26)
152 KOG2193|consensus 59.5 0.61 1.3E-05 44.4 -4.6 73 165-241 80-153 (584)
153 KOG4410|consensus 59.4 22 0.00047 32.6 5.4 48 164-217 329-377 (396)
154 KOG4483|consensus 57.1 25 0.00053 33.6 5.5 57 163-226 389-446 (528)
155 KOG4676|consensus 57.1 1.6 3.4E-05 41.3 -2.3 63 166-233 152-214 (479)
156 PF07530 PRE_C2HC: Associated 53.5 26 0.00056 24.8 4.0 64 180-246 2-66 (68)
157 KOG2318|consensus 53.1 79 0.0017 31.6 8.4 79 163-241 172-304 (650)
158 PF10567 Nab6_mRNP_bdg: RNA-re 52.5 22 0.00048 32.5 4.3 58 165-222 15-79 (309)
159 COG5222 Uncharacterized conser 50.6 8.6 0.00019 35.3 1.4 21 77-97 176-197 (427)
160 KOG4019|consensus 49.2 16 0.00035 31.1 2.7 76 163-244 8-89 (193)
161 PF15288 zf-CCHC_6: Zinc knuck 45.7 11 0.00023 24.2 0.8 21 78-98 2-25 (40)
162 PF03468 XS: XS domain; Inter 44.1 40 0.00087 26.4 4.1 45 178-225 30-75 (116)
163 PF15513 DUF4651: Domain of un 39.2 65 0.0014 22.6 4.1 19 180-198 9-27 (62)
164 smart00596 PRE_C2HC PRE_C2HC d 39.1 47 0.001 23.8 3.4 63 180-245 2-65 (69)
165 KOG0119|consensus 37.9 15 0.00033 35.9 1.0 19 79-97 287-306 (554)
166 KOG4454|consensus 37.3 7.2 0.00016 34.3 -1.2 68 163-231 78-149 (267)
167 KOG2295|consensus 36.7 4.7 0.0001 39.8 -2.6 73 164-236 230-302 (648)
168 KOG1295|consensus 36.4 43 0.00094 31.6 3.7 67 166-232 8-77 (376)
169 KOG3116|consensus 29.6 13 0.00028 30.7 -0.8 21 77-97 27-48 (177)
170 PF15359 CDV3: Carnitine defic 29.6 87 0.0019 25.1 3.9 14 135-148 84-97 (129)
171 PF13790 DUF4182: Domain of un 28.1 31 0.00068 21.8 0.9 14 77-90 3-18 (38)
172 KOG3476|consensus 28.0 12 0.00026 28.1 -1.2 25 77-101 54-84 (100)
173 PF07292 NID: Nmi/IFP 35 domai 26.1 36 0.00078 25.5 1.1 23 165-187 52-74 (88)
174 KOG4365|consensus 25.3 11 0.00025 36.2 -2.1 76 167-243 5-80 (572)
175 PF11823 DUF3343: Protein of u 24.3 1E+02 0.0023 21.5 3.2 28 209-236 3-30 (73)
176 PRK10905 cell division protein 21.0 2.9E+02 0.0062 25.7 6.1 63 163-229 245-308 (328)
177 PRK11901 hypothetical protein; 20.1 2.4E+02 0.0053 26.2 5.5 63 163-230 243-307 (327)
No 1
>KOG0122|consensus
Probab=100.00 E-value=6.6e-69 Score=460.86 Aligned_cols=224 Identities=43% Similarity=0.775 Sum_probs=189.8
Q ss_pred ceeeEEEEEEEEEEEeChhHHhhcCCcccccccCCCCCCCCCCeeecceEEEEeecCccccccch--hHhhhccc--eee
Q psy13227 4 ESTKVVRTLKVEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQFISNKEEVEKPE--EENLEKLK--FIS 79 (247)
Q Consensus 4 ~k~k~~~~~~~~~~~v~~~va~Rk~w~kfg~~~~~~~g~~~~tt~~~e~v~~~~~~~~~~~~~~~--~~~~~~~~--~~~ 79 (247)
+||||||+|||+|+.|+|+||+||+|.|||++++++|||+..||.++|||.|+|+++|+.+++++ ++...++. +++
T Consensus 42 kK~Kvt~~~kv~k~~v~K~vaeRknW~KFG~~~~~~~Gp~~~Tt~v~EeI~l~~~~~~~~~~~~~~~~d~~s~~g~~~~~ 121 (270)
T KOG0122|consen 42 KKVKVTRTFKVEKRAVPKAVAERKNWVKFGDSKGEPAGPSVATTRVTEEIELRFIRSPTFEEEQDIQEDKASKLGKSIVA 121 (270)
T ss_pred cEEEEEEEEEEEEEeccHHHHhhccchhhccccCCCCCCceeeEecccceeEEeccCcccchhhhhhhcchhhcccceee
Confidence 79999999999999999999999999999999999999999999999999999999996544332 22333332 899
Q ss_pred eeeccCCccccCCCCccchhh-hhhcCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCcCCCc
Q psy13227 80 CRTCKGAHFTNNCPFKDSALF-LADANKKPFNTVPGTNIMAASSDDKKSGGPGGAPGGPAIYVPPSLREGPGGKRVEGYN 158 (247)
Q Consensus 80 Cr~C~g~h~t~~CP~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvpp~~r~~~~~~~~~~~~ 158 (247)
||+|+|||||++||||+++.+ ++ +|+... .++... ..++..|.||||++|.++.+.+| ++
T Consensus 122 CR~C~gdHwt~~CPyK~~~~~~ld---------e~~~~e-------~~~~~~-ap~~~~g~yvpP~mR~ga~~~~g-~~- 182 (270)
T KOG0122|consen 122 CRICKGDHWTTNCPYKDTLSPALD---------EPATAE-------SPAESA-APGTKKGKYVPPSMRAGADRASG-SD- 182 (270)
T ss_pred eeecCCCeeeecCCchhhcccccc---------CCcccc-------cchhhc-CcCCcCccccCccccCCcccccc-cc-
Confidence 999999999999999999875 22 111100 001111 11677899999999999333334 32
Q ss_pred ccCCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEE
Q psy13227 159 ARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILS 238 (247)
Q Consensus 159 ~~~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~ 238 (247)
.|.|+|.++|+|+|||++++|++|++||.+||.|.+++|++|++||.++|||||+|.++++|++||..|||+.|++++|+
T Consensus 183 ~R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILr 262 (270)
T KOG0122|consen 183 MRERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILR 262 (270)
T ss_pred cccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEE
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCC
Q psy13227 239 VDWSKSTN 246 (247)
Q Consensus 239 V~~akp~~ 246 (247)
|+|++|++
T Consensus 263 vEwskP~~ 270 (270)
T KOG0122|consen 263 VEWSKPSN 270 (270)
T ss_pred EEecCCCC
Confidence 99999975
No 2
>PF12353 eIF3g: Eukaryotic translation initiation factor 3 subunit G ; InterPro: IPR024675 At least eleven different protein factors are involved in initiation of protein synthesis in eukaryotes. Binding of initiator tRNA and mRNA to the 40S subunit requires the presence of the translation initiation factors eIF-2 and eIF-3, with eIF-3 being particularly important for 80S ribosome dissociation and mRNA binding []. eIF-3 is the most complex translation inititation factor, consisting of about 13 putative subunits and having a molecular weight of between 550 - 700 kDa in mammalian cells. Subunits are designated eIF-3a - eIF-3m; the large number of subunits means that the interactions between the individual subunits that make up the eIF-3 complex are complex and varied. Subunit G is required for eIF3 integrity. This entry represents a domain of approximately 130 amino acids in length found at the N terminus of eukaryotic translation initiation factor 3 subunit G. This domain is commonly found in association with the RNA recognition domain PF00076 from PFAM.
Probab=100.00 E-value=1.6e-39 Score=260.01 Aligned_cols=95 Identities=43% Similarity=0.754 Sum_probs=83.1
Q ss_pred ceeeEEEEEE--EEEEEeChhHHhhcCCcccccccCCCCCCCCCCeeecceEEEEeecCccccccchhHh---hhccc--
Q psy13227 4 ESTKVVRTLK--VEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQFISNKEEVEKPEEEN---LEKLK-- 76 (247)
Q Consensus 4 ~k~k~~~~~~--~~~~~v~~~va~Rk~w~kfg~~~~~~~g~~~~tt~~~e~v~~~~~~~~~~~~~~~~~~---~~~~~-- 76 (247)
+||||||+|| +++++|+++||+||+|+|||++++++|||+++||+++|||+|+|+++|+..++++++. +....
T Consensus 26 kkvKvtk~~k~~~~~~~V~k~VaeRk~W~KFG~~~~~~pGp~~~Tt~~~EeI~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (128)
T PF12353_consen 26 KKVKVTKKIKVTVVKEKVNKAVAERKKWKKFGDEKNDPPGPDSSTTQVGEEIFLELSRNWESEEEEEEEEEAKKKKKGKS 105 (128)
T ss_pred CEEEEEEEEEEEEEEEEeCHHHHHhhCccccCccccCCCCCCcccccccceEEEEecCCccccccccccchhhhcccCCc
Confidence 6999999999 6788999999999999999999999999999999999999999999998764443222 11111
Q ss_pred eeeeeeccCCccccCCCCccch
Q psy13227 77 FISCRTCKGAHFTNNCPFKDSA 98 (247)
Q Consensus 77 ~~~Cr~C~g~h~t~~CP~k~~~ 98 (247)
+|+||+|+|||||++|||||+|
T Consensus 106 ~v~CR~CkGdH~T~~CPyKd~~ 127 (128)
T PF12353_consen 106 KVKCRICKGDHWTSKCPYKDTL 127 (128)
T ss_pred eEEeCCCCCCcccccCCccccc
Confidence 8999999999999999999987
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.78 E-value=1.9e-18 Score=141.20 Aligned_cols=85 Identities=22% Similarity=0.368 Sum_probs=81.1
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
+...++|||+||++++++++|+++|.+||.|.++.|+.|+.|++++|||||+|.+.++|+.|++.||+..|+|+.|+|+|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
+++++
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 98764
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=1.6e-16 Score=145.44 Aligned_cols=83 Identities=33% Similarity=0.501 Sum_probs=79.3
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecC
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ak 243 (247)
...+|||+|||+++++++|+++|++||.|.+++|++|+.||.++|||||+|.+.++|..||..|||..|+|+.|+|.|+.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q psy13227 244 STN 246 (247)
Q Consensus 244 p~~ 246 (247)
++.
T Consensus 348 ~~~ 350 (352)
T TIGR01661 348 NKA 350 (352)
T ss_pred CCC
Confidence 764
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.68 E-value=2e-16 Score=144.74 Aligned_cols=82 Identities=22% Similarity=0.470 Sum_probs=79.0
Q ss_pred ccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCC
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKS 244 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp 244 (247)
.++|||+|||.++++++|+++|+.||+|.+|.|++++.+|+++|||||+|.+.++|+.||+.|||..+.|+.|.|+|++|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q psy13227 245 TN 246 (247)
Q Consensus 245 ~~ 246 (247)
..
T Consensus 83 ~~ 84 (352)
T TIGR01661 83 SS 84 (352)
T ss_pred cc
Confidence 63
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.65 E-value=7.4e-16 Score=142.40 Aligned_cols=85 Identities=26% Similarity=0.497 Sum_probs=80.8
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
.....++|||+|||+++++++|+++|..||.|.+|.|++|+.+++++|||||+|.+.++|++||..|||..+.++.|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q psy13227 241 WSKST 245 (247)
Q Consensus 241 ~akp~ 245 (247)
|++|.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 99874
No 7
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=1.9e-15 Score=106.18 Aligned_cols=70 Identities=30% Similarity=0.589 Sum_probs=67.5
Q ss_pred EEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEE
Q psy13227 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILS 238 (247)
Q Consensus 168 l~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~ 238 (247)
|||+|||+++++++|+++|++||.|..+.+..+ .++..+|||||.|.+.++|+.|++.|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 5899999999999999999999999999999999885
No 8
>KOG0121|consensus
Probab=99.62 E-value=8.6e-16 Score=121.56 Aligned_cols=81 Identities=22% Similarity=0.501 Sum_probs=77.8
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
-..++||||+||+..++|++|.+||+++|.|.+|.+-.|+.+..+.|||||+|.+.++|+.|++.+||..++.++|+++|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q psy13227 242 S 242 (247)
Q Consensus 242 a 242 (247)
.
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 5
No 9
>KOG4207|consensus
Probab=99.60 E-value=1.4e-15 Score=129.03 Aligned_cols=83 Identities=28% Similarity=0.563 Sum_probs=79.9
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
+-+.+++|.|-||.+.++.++|+.+|.+||.|-.|+|++|+.|+.++|||||-|....+|+.|++.|+|..++|+.|+|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q psy13227 241 WSK 243 (247)
Q Consensus 241 ~ak 243 (247)
+|+
T Consensus 89 ~ar 91 (256)
T KOG4207|consen 89 MAR 91 (256)
T ss_pred hhh
Confidence 886
No 10
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.56 E-value=1.7e-14 Score=141.12 Aligned_cols=84 Identities=23% Similarity=0.351 Sum_probs=79.8
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...++|||+||++++++++|+++|+.||.|.+++|++++.+|.++|||||+|.+.++|..||..|||+.++|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 34579999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy13227 243 KSTN 246 (247)
Q Consensus 243 kp~~ 246 (247)
.+++
T Consensus 282 i~pP 285 (612)
T TIGR01645 282 VTPP 285 (612)
T ss_pred CCCc
Confidence 8754
No 11
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.56 E-value=3.7e-14 Score=100.60 Aligned_cols=70 Identities=39% Similarity=0.688 Sum_probs=65.2
Q ss_pred EEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEE
Q psy13227 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILS 238 (247)
Q Consensus 168 l~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~ 238 (247)
|||+|||+++++++|+++|+.||.|..+.+..++. +.++|+|||+|.+.++|.+|+..++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 99999999999999999999999999999999875
No 12
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.54 E-value=3.4e-14 Score=131.39 Aligned_cols=82 Identities=23% Similarity=0.424 Sum_probs=76.8
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCC--eEEEEee
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDH--LILSVDW 241 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g--~~L~V~~ 241 (247)
..++|||+|||+++++++|+++|++||.|..+.|++++.++.++|||||+|.+.++|++||+.||+..+.+ +.|.|.|
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 34689999999999999999999999999999999999999999999999999999999999999999876 7899999
Q ss_pred cCCC
Q psy13227 242 SKST 245 (247)
Q Consensus 242 akp~ 245 (247)
+...
T Consensus 272 a~~~ 275 (346)
T TIGR01659 272 AEEH 275 (346)
T ss_pred CCcc
Confidence 8864
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.53 E-value=3.6e-14 Score=138.82 Aligned_cols=81 Identities=21% Similarity=0.369 Sum_probs=77.3
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...++|||+||++++++++|+++|.+||.|.+|+++.|+.||+++|||||+|.+.++|++|+..|||..++|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred C
Q psy13227 243 K 243 (247)
Q Consensus 243 k 243 (247)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 14
>KOG0148|consensus
Probab=99.51 E-value=3e-14 Score=125.09 Aligned_cols=82 Identities=27% Similarity=0.483 Sum_probs=79.2
Q ss_pred ccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCC
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKS 244 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp 244 (247)
...+||+-|+..++-++|++.|.+||.|+.++|++|..|+++|||+||.|.++++|+.||..|||..|++|.|+-.||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q psy13227 245 TN 246 (247)
Q Consensus 245 ~~ 246 (247)
++
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 65
No 15
>KOG0107|consensus
Probab=99.51 E-value=5.5e-14 Score=116.60 Aligned_cols=79 Identities=25% Similarity=0.555 Sum_probs=73.4
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
.+-.+.|||+||+..+++.||..+|..||+|..|.|.+++ .|||||+|.+..||+.|+..|+|..|.|..|+|++
T Consensus 7 ~~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 7 RNGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred cCCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 3557899999999999999999999999999999998865 78999999999999999999999999999999999
Q ss_pred cCCC
Q psy13227 242 SKST 245 (247)
Q Consensus 242 akp~ 245 (247)
+.-+
T Consensus 82 S~G~ 85 (195)
T KOG0107|consen 82 STGR 85 (195)
T ss_pred ecCC
Confidence 8754
No 16
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.51 E-value=7.7e-14 Score=136.01 Aligned_cols=79 Identities=28% Similarity=0.521 Sum_probs=76.1
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCC
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKS 244 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp 244 (247)
.+|||+|||.+++|++|+++|+.||.|.+|+|.+|..|++++|||||+|.+.++|++|+..||+..+.|+.|+|.|+..
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999999864
No 17
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.49 E-value=1.3e-13 Score=121.80 Aligned_cols=75 Identities=19% Similarity=0.351 Sum_probs=70.5
Q ss_pred ccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecC
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ak 243 (247)
.++|||+|||+.+++++|+++|+.||.|.+|.|++++. ++|||||+|.+.++|+.||. |||..|.|+.|+|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 46999999999999999999999999999999999863 47899999999999999996 99999999999999986
No 18
>KOG0149|consensus
Probab=99.49 E-value=5.1e-14 Score=121.52 Aligned_cols=80 Identities=21% Similarity=0.333 Sum_probs=73.2
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
+...++|||++|+|.+..++|++.|.+||+|....|+.|+.||++|||+||+|.+.+.|.+|++. ..-.|+||+.++.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 34567999999999999999999999999999999999999999999999999999999999994 45579999988876
Q ss_pred c
Q psy13227 242 S 242 (247)
Q Consensus 242 a 242 (247)
|
T Consensus 88 A 88 (247)
T KOG0149|consen 88 A 88 (247)
T ss_pred h
Confidence 5
No 19
>KOG0113|consensus
Probab=99.49 E-value=1.2e-13 Score=122.62 Aligned_cols=83 Identities=28% Similarity=0.490 Sum_probs=78.9
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
.|...||||+.|+.+++|..|+..|..||+|.+|.|++|..||+++|||||+|.+..+...|.+..+|..|+|+.|-|++
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCC
Q psy13227 242 SKS 244 (247)
Q Consensus 242 akp 244 (247)
-.-
T Consensus 178 ERg 180 (335)
T KOG0113|consen 178 ERG 180 (335)
T ss_pred ccc
Confidence 653
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.48 E-value=2e-13 Score=130.99 Aligned_cols=82 Identities=29% Similarity=0.458 Sum_probs=78.1
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
+..++|||+|||..+++++|+++|..||.|..+.|+.+..+|.++|||||+|.+.++|..||..|||..++|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45579999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred CC
Q psy13227 243 KS 244 (247)
Q Consensus 243 kp 244 (247)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 64
No 21
>PLN03213 repressor of silencing 3; Provisional
Probab=99.48 E-value=9.7e-14 Score=130.25 Aligned_cols=77 Identities=21% Similarity=0.374 Sum_probs=72.0
Q ss_pred ccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCH--HHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNK--ADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~--e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
..+|||+||++.++++||+.+|+.||.|.++.|+ ++|| ||||||+|.+. .++.+||..|||..|+|+.|+|+.|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 4689999999999999999999999999999999 4577 99999999987 7899999999999999999999999
Q ss_pred CCC
Q psy13227 243 KST 245 (247)
Q Consensus 243 kp~ 245 (247)
+|.
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 874
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.47 E-value=2.3e-13 Score=129.02 Aligned_cols=79 Identities=27% Similarity=0.559 Sum_probs=76.7
Q ss_pred ccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecC
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ak 243 (247)
.++|||+|||..+++++|+++|..||.|..|.++.+..+|.++|||||+|.+.++|..|+..|||..+.|+.|.|.|+.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 5799999999999999999999999999999999999899999999999999999999999999999999999999976
No 23
>KOG0130|consensus
Probab=99.47 E-value=1.2e-13 Score=110.43 Aligned_cols=84 Identities=26% Similarity=0.453 Sum_probs=80.0
Q ss_pred cCCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEE
Q psy13227 160 RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSV 239 (247)
Q Consensus 160 ~~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V 239 (247)
.+.-+...|||+++.+.++|++|.+.|..||.|..|+|-.|+.||..+|||+|+|.+.+.|+.|+..|||..+.|+.|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 35567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecC
Q psy13227 240 DWSK 243 (247)
Q Consensus 240 ~~ak 243 (247)
+|+-
T Consensus 147 Dw~F 150 (170)
T KOG0130|consen 147 DWCF 150 (170)
T ss_pred EEEE
Confidence 9975
No 24
>KOG0145|consensus
Probab=99.47 E-value=1.7e-13 Score=120.03 Aligned_cols=84 Identities=25% Similarity=0.490 Sum_probs=80.5
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
+..+.|.|.-||..+++++|+.||...|+|.++++++|+-+|++-||+||.|.+.+||++||..|||..+..+.|+|.||
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy13227 243 KSTN 246 (247)
Q Consensus 243 kp~~ 246 (247)
+|..
T Consensus 119 RPSs 122 (360)
T KOG0145|consen 119 RPSS 122 (360)
T ss_pred cCCh
Confidence 9974
No 25
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.46 E-value=3.4e-13 Score=115.05 Aligned_cols=79 Identities=34% Similarity=0.628 Sum_probs=76.7
Q ss_pred ccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecC
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ak 243 (247)
.++|||+|||..+++++|+++|..||.|.++.+..++.++.++|||||.|.+.++|..|+..|+|..|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5899999999999999999999999999999999998899999999999999999999999999999999999999965
No 26
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.46 E-value=3.1e-13 Score=131.76 Aligned_cols=83 Identities=19% Similarity=0.382 Sum_probs=78.7
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
....++|||+||++++++++|+++|+.||.|.++.++.+ .+|.++|||||.|.+.++|.+|+..|||..++|+.|.|.|
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 345678999999999999999999999999999999999 5899999999999999999999999999999999999999
Q ss_pred cCCC
Q psy13227 242 SKST 245 (247)
Q Consensus 242 akp~ 245 (247)
+.++
T Consensus 361 a~~k 364 (562)
T TIGR01628 361 AQRK 364 (562)
T ss_pred ccCc
Confidence 9865
No 27
>smart00362 RRM_2 RNA recognition motif.
Probab=99.45 E-value=6e-13 Score=92.05 Aligned_cols=72 Identities=36% Similarity=0.657 Sum_probs=67.6
Q ss_pred EEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 167 AIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 167 tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
+|+|+|||..+++++|+++|..||.+..+.+..+. +.++|+|||+|.+.++|+.|+..++|..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998876 7889999999999999999999999999999998874
No 28
>KOG0125|consensus
Probab=99.45 E-value=4.5e-13 Score=120.41 Aligned_cols=81 Identities=22% Similarity=0.372 Sum_probs=75.0
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
+....|+|+|+|+...+.||+.+|.+||.|.+|.|+.+. .-+|||+||+|.+.+||++|-.+|||..+.|++|.|..|
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 344579999999999999999999999999999999983 458999999999999999999999999999999999998
Q ss_pred CCC
Q psy13227 243 KST 245 (247)
Q Consensus 243 kp~ 245 (247)
.++
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 865
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.45 E-value=4e-13 Score=131.11 Aligned_cols=80 Identities=25% Similarity=0.420 Sum_probs=74.1
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeC-CeEEEEee
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYD-HLILSVDW 241 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~-g~~L~V~~ 241 (247)
...++|||+|||.+++|++|+++|+.||.|..++|++| .+|+++|||||+|.+.++|+.||+.||+..+. ++.|.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 44589999999999999999999999999999999999 79999999999999999999999999999985 77787777
Q ss_pred cC
Q psy13227 242 SK 243 (247)
Q Consensus 242 ak 243 (247)
+.
T Consensus 135 S~ 136 (578)
T TIGR01648 135 SV 136 (578)
T ss_pred cc
Confidence 64
No 30
>KOG0126|consensus
Probab=99.44 E-value=1.8e-14 Score=120.14 Aligned_cols=80 Identities=29% Similarity=0.453 Sum_probs=76.9
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
-.|+.-|||+|||+..+|.||.-+|++||.|..|.|++|+.||+++||||+.|.+..+.--|+..|||..|.|+.|+|+.
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999985
No 31
>smart00360 RRM RNA recognition motif.
Probab=99.43 E-value=7.9e-13 Score=91.00 Aligned_cols=71 Identities=38% Similarity=0.648 Sum_probs=67.2
Q ss_pred EeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 170 V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
|+|||..+++++|+++|..||.|..+.+..++.++.++|||||+|.+.++|..|+..|++..++|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988789999999999999999999999999999999998874
No 32
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.43 E-value=7.2e-13 Score=125.66 Aligned_cols=81 Identities=22% Similarity=0.338 Sum_probs=76.3
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
.+..+|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||. |||..+.|+.|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 346799999999999999999999999999999999999999999999999999999999997 8999999999999886
Q ss_pred CC
Q psy13227 243 KS 244 (247)
Q Consensus 243 kp 244 (247)
..
T Consensus 166 ~~ 167 (457)
T TIGR01622 166 QA 167 (457)
T ss_pred ch
Confidence 53
No 33
>KOG0111|consensus
Probab=99.43 E-value=8.2e-14 Score=119.40 Aligned_cols=83 Identities=20% Similarity=0.341 Sum_probs=79.9
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
.+-++|||++|.+.++|.-|...|-+||.|..|.++.|.+++++|||+||+|.-.+||..||..||+..+-|+.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q psy13227 243 KST 245 (247)
Q Consensus 243 kp~ 245 (247)
+|.
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 985
No 34
>KOG0145|consensus
Probab=99.42 E-value=1.2e-12 Score=114.82 Aligned_cols=82 Identities=33% Similarity=0.497 Sum_probs=78.2
Q ss_pred ccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCC
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKS 244 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp 244 (247)
..+|||-||+++++|.-|.++|.+||.|..+++++|..|.+++||+||++.+.++|..||..|||+.++++.|.|.|-..
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 47999999999999999999999999999999999998899999999999999999999999999999999999999766
Q ss_pred CC
Q psy13227 245 TN 246 (247)
Q Consensus 245 ~~ 246 (247)
+.
T Consensus 358 k~ 359 (360)
T KOG0145|consen 358 KA 359 (360)
T ss_pred CC
Confidence 53
No 35
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.38 E-value=2.3e-12 Score=112.51 Aligned_cols=74 Identities=20% Similarity=0.278 Sum_probs=67.9
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
+..+|||+||++.+++++|+++|+.||.|.+|.|+++. ..+|||||+|.+.++++.|+. |||..|.++.|.|..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITR 77 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEe
Confidence 45799999999999999999999999999999999985 445799999999999999996 999999999998864
No 36
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.38 E-value=5.6e-12 Score=87.57 Aligned_cols=74 Identities=34% Similarity=0.609 Sum_probs=69.1
Q ss_pred EEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 167 AIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 167 tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
+|+|+|||..+++++|+++|..||.|..+.+..+..+ .++|+|||+|.+.++|..|+..+++..++|+.|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988644 7799999999999999999999999999999999875
No 37
>KOG0131|consensus
Probab=99.37 E-value=6.6e-13 Score=110.82 Aligned_cols=83 Identities=23% Similarity=0.365 Sum_probs=78.7
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
.++...||||+||++.++++.|.+||-+.|+|.++++++|+.+...+||||++|.++++|+-|++.||...+.|+.|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecC
Q psy13227 241 WSK 243 (247)
Q Consensus 241 ~ak 243 (247)
-+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 765
No 38
>KOG0148|consensus
Probab=99.36 E-value=2.7e-12 Score=112.96 Aligned_cols=79 Identities=24% Similarity=0.511 Sum_probs=74.5
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
...+.|+|||+|++..++|++|++.|++||+|..|++.++ +||+||.|.+.|.|..||-.+|+..+.|..+++.
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 4578899999999999999999999999999999999988 5899999999999999999999999999999999
Q ss_pred ecCCC
Q psy13227 241 WSKST 245 (247)
Q Consensus 241 ~akp~ 245 (247)
|.+..
T Consensus 234 WGKe~ 238 (321)
T KOG0148|consen 234 WGKEG 238 (321)
T ss_pred ccccC
Confidence 98743
No 39
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.36 E-value=9.3e-12 Score=119.71 Aligned_cols=79 Identities=23% Similarity=0.220 Sum_probs=72.7
Q ss_pred CCCccEEEEeecCC-CCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 162 NDDTTAIRISNLSV-NTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 162 ~~~~~tl~V~nLp~-~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
....++|||+||++ .+++++|+++|+.||.|.+|.+++++ +|||||+|.+.++|..|+..|||..|.|+.|+|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34668999999998 69999999999999999999998874 6899999999999999999999999999999999
Q ss_pred ecCCC
Q psy13227 241 WSKST 245 (247)
Q Consensus 241 ~akp~ 245 (247)
+++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 98653
No 40
>KOG0108|consensus
Probab=99.35 E-value=1.9e-12 Score=122.37 Aligned_cols=81 Identities=26% Similarity=0.489 Sum_probs=78.3
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCCC
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKST 245 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp~ 245 (247)
+.|||+|+|+++++++|..+|+..|.|.+++++.|++||+++||||++|.+.++|..|++.|||..+.|+.|+|.|+.-.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred C
Q psy13227 246 N 246 (247)
Q Consensus 246 ~ 246 (247)
+
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 41
>KOG0117|consensus
Probab=99.34 E-value=5.7e-12 Score=117.16 Aligned_cols=81 Identities=25% Similarity=0.372 Sum_probs=75.3
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeC-CeEEEEee
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYD-HLILSVDW 241 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~-g~~L~V~~ 241 (247)
...+-|||+.||.++.|++|..||.+.|.|..++|+.|+.+|.+||||||+|.+.++|+.||+.||+++|. |+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 45688999999999999999999999999999999999999999999999999999999999999999874 78888776
Q ss_pred cC
Q psy13227 242 SK 243 (247)
Q Consensus 242 ak 243 (247)
+.
T Consensus 161 Sv 162 (506)
T KOG0117|consen 161 SV 162 (506)
T ss_pred ee
Confidence 54
No 42
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.33 E-value=6.8e-12 Score=122.54 Aligned_cols=74 Identities=26% Similarity=0.465 Sum_probs=69.1
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhcc--CCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQF--GPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~f--G~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
...+|||+||++++++++|+++|+.| |.|.+|.++ ++||||+|.+.++|++|++.|||..|+|+.|+|.|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35689999999999999999999999 999999765 35999999999999999999999999999999999
Q ss_pred cCCC
Q psy13227 242 SKST 245 (247)
Q Consensus 242 akp~ 245 (247)
++|+
T Consensus 304 Akp~ 307 (578)
T TIGR01648 304 AKPV 307 (578)
T ss_pred ccCC
Confidence 9985
No 43
>KOG0146|consensus
Probab=99.31 E-value=2.1e-12 Score=113.59 Aligned_cols=87 Identities=23% Similarity=0.362 Sum_probs=83.7
Q ss_pred cCCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEE
Q psy13227 160 RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSV 239 (247)
Q Consensus 160 ~~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V 239 (247)
++.++.|+|||-+||....+.+|..+|-+||.|.+.++..|+.|..+|.|+||.|.+..+|+.||..|||+.|+-++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy13227 240 DWSKSTN 246 (247)
Q Consensus 240 ~~akp~~ 246 (247)
.+-+|+.
T Consensus 360 QLKRPkd 366 (371)
T KOG0146|consen 360 QLKRPKD 366 (371)
T ss_pred hhcCccc
Confidence 9999875
No 44
>smart00361 RRM_1 RNA recognition motif.
Probab=99.30 E-value=1.5e-11 Score=88.04 Aligned_cols=62 Identities=31% Similarity=0.468 Sum_probs=56.4
Q ss_pred HHHHHHHhh----ccCCeeEEE-EeecCCC--CceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 179 ENDLEDLVK----QFGPTSKMY-LSRDKTN--GLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 179 e~dL~~lF~----~fG~I~~i~-l~~d~~t--g~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
+++|+++|+ .||.|.++. ++.++.+ +.++||+||.|.+.++|..|+..|||..++|+.|.+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578999998 999999996 7777666 9999999999999999999999999999999999863
No 45
>KOG0114|consensus
Probab=99.29 E-value=1.5e-11 Score=94.31 Aligned_cols=79 Identities=24% Similarity=0.430 Sum_probs=71.9
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
.....|||.|||.+++.++..++|.+||.|..|+|-..+ ..+|-|||.|.+..+|.+|++.|+|+.++++.|.|-+-
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 345689999999999999999999999999999997654 45899999999999999999999999999999999886
Q ss_pred CC
Q psy13227 243 KS 244 (247)
Q Consensus 243 kp 244 (247)
+|
T Consensus 93 q~ 94 (124)
T KOG0114|consen 93 QP 94 (124)
T ss_pred CH
Confidence 65
No 46
>KOG0127|consensus
Probab=99.28 E-value=1e-11 Score=117.90 Aligned_cols=81 Identities=33% Similarity=0.666 Sum_probs=75.7
Q ss_pred ccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCC
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKS 244 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp 244 (247)
-..|.|.|||+.+...+|+.+|+.||.|..|.|++.+.++.+ |||||.|....+|..|++.+||..|+|+.|-|+||-+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 578999999999999999999999999999999988755555 9999999999999999999999999999999999987
Q ss_pred CC
Q psy13227 245 TN 246 (247)
Q Consensus 245 ~~ 246 (247)
++
T Consensus 196 Kd 197 (678)
T KOG0127|consen 196 KD 197 (678)
T ss_pred cc
Confidence 64
No 47
>KOG0105|consensus
Probab=99.27 E-value=5.9e-12 Score=105.59 Aligned_cols=77 Identities=29% Similarity=0.499 Sum_probs=69.5
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecC
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ak 243 (247)
..++|||+|||.++.+.+|++||.+||.|..|.|-..+ ..-.||||+|.+..+|+.||..-+|+.|+|..|+|+|+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 34789999999999999999999999999999874432 345799999999999999999999999999999999986
No 48
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.26 E-value=2.2e-11 Score=117.14 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=68.6
Q ss_pred ccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHh--cCceeCCeEEEEeec
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL--NGYGYDHLILSVDWS 242 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~L--nG~~i~g~~L~V~~a 242 (247)
+.+|||+|||+++++++|+++|++||.|.++.++++ +|||||+|.+.++|+.|+..| |+..++|+.|.|+|+
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 468999999999999999999999999999998864 579999999999999999874 788999999999998
Q ss_pred CCC
Q psy13227 243 KST 245 (247)
Q Consensus 243 kp~ 245 (247)
.++
T Consensus 76 ~~~ 78 (481)
T TIGR01649 76 TSQ 78 (481)
T ss_pred CCc
Confidence 753
No 49
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.26 E-value=3.4e-11 Score=82.18 Aligned_cols=56 Identities=36% Similarity=0.632 Sum_probs=51.2
Q ss_pred HHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 182 LEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 182 L~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
|.++|++||.|.++.+..+. +++|||+|.+.++|..|+..|||..++|+.|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999987663 689999999999999999999999999999999997
No 50
>KOG0144|consensus
Probab=99.25 E-value=6.3e-12 Score=116.47 Aligned_cols=83 Identities=28% Similarity=0.510 Sum_probs=76.3
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCce-eC--CeEEEE
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYG-YD--HLILSV 239 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~-i~--g~~L~V 239 (247)
.+.+.|||+-|+..++|.+++++|++||.|..|+|++|. .+.+||||||.|.+++-|..||+.|||.. +. ...|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 456899999999999999999999999999999999995 89999999999999999999999999986 33 467999
Q ss_pred eecCCCC
Q psy13227 240 DWSKSTN 246 (247)
Q Consensus 240 ~~akp~~ 246 (247)
.||.++.
T Consensus 201 kFADtqk 207 (510)
T KOG0144|consen 201 KFADTQK 207 (510)
T ss_pred EecccCC
Confidence 9998764
No 51
>KOG0117|consensus
Probab=99.24 E-value=1.6e-11 Score=114.18 Aligned_cols=73 Identities=30% Similarity=0.534 Sum_probs=69.6
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCCC
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKST 245 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp~ 245 (247)
-.|||.||+.++|++.|+++|+.||.|.+|..++| ||||.|.++++|.+|++.+||+.|+|..|.|.+|+|.
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 46999999999999999999999999999998876 9999999999999999999999999999999999986
Q ss_pred C
Q psy13227 246 N 246 (247)
Q Consensus 246 ~ 246 (247)
.
T Consensus 332 ~ 332 (506)
T KOG0117|consen 332 D 332 (506)
T ss_pred h
Confidence 3
No 52
>KOG0127|consensus
Probab=99.23 E-value=1.6e-11 Score=116.53 Aligned_cols=82 Identities=21% Similarity=0.385 Sum_probs=79.1
Q ss_pred ccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCC
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKS 244 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp 244 (247)
..||||++||++++.++|.++|+.+|+|..++++.++.++.+|||+||+|.-.+|+++|+..+++..+.|++|+|..+++
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q psy13227 245 TN 246 (247)
Q Consensus 245 ~~ 246 (247)
+.
T Consensus 85 R~ 86 (678)
T KOG0127|consen 85 RA 86 (678)
T ss_pred cc
Confidence 74
No 53
>KOG0124|consensus
Probab=99.16 E-value=2.7e-11 Score=110.51 Aligned_cols=78 Identities=22% Similarity=0.382 Sum_probs=75.0
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
-.+.|||+.+++...|+.|+..|.+||+|.+|.+..|+.|++++|||||+|.-.+.|+-|++.|||..++|+.|+|..
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 347899999999999999999999999999999999999999999999999999999999999999999999999874
No 54
>KOG0147|consensus
Probab=99.16 E-value=3.9e-11 Score=113.99 Aligned_cols=76 Identities=33% Similarity=0.586 Sum_probs=73.0
Q ss_pred EEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecC
Q psy13227 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243 (247)
Q Consensus 168 l~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ak 243 (247)
|||+||..++++++|+.+|.+||.|..|.+.+|.+||+++||+||+|.+.++|..|+..|||+.+-|+.|+|..-.
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 9999999999999999999999999999999998899999999999999999999999999999999999987543
No 55
>KOG0144|consensus
Probab=99.15 E-value=1.1e-10 Score=108.22 Aligned_cols=82 Identities=22% Similarity=0.454 Sum_probs=74.3
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCce-e--CCeEEEE
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYG-Y--DHLILSV 239 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~-i--~g~~L~V 239 (247)
.+.-.+||+.+|..++|.||+++|.+||.|..|.|++|+.|+.++|||||.|.++++|.+|+..|+... + ++..|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 556689999999999999999999999999999999999999999999999999999999999998875 3 3567888
Q ss_pred eecCC
Q psy13227 240 DWSKS 244 (247)
Q Consensus 240 ~~akp 244 (247)
.+|..
T Consensus 112 k~Ad~ 116 (510)
T KOG0144|consen 112 KYADG 116 (510)
T ss_pred cccch
Confidence 88753
No 56
>KOG4208|consensus
Probab=99.11 E-value=2.4e-10 Score=97.16 Aligned_cols=84 Identities=21% Similarity=0.387 Sum_probs=76.6
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhcc-CCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQF-GPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~f-G~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
......+||..+|..+.+..|..+|.+| |.+.++++.+++.||.++|||||+|.+.+.|+-|.+.||++.++++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3445679999999999999999999988 778888999999999999999999999999999999999999999999998
Q ss_pred ecCCC
Q psy13227 241 WSKST 245 (247)
Q Consensus 241 ~akp~ 245 (247)
+-.|.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 86653
No 57
>KOG0415|consensus
Probab=99.10 E-value=1.6e-10 Score=105.04 Aligned_cols=83 Identities=25% Similarity=0.390 Sum_probs=79.0
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
.+..+.|||-.|++-++.+||.-+|+.||.|.++.|++|+.||.+-.||||+|.+.+++++|.-.|+...|+++.|+|+|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q psy13227 242 SKS 244 (247)
Q Consensus 242 akp 244 (247)
+++
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 874
No 58
>KOG0131|consensus
Probab=99.08 E-value=1.4e-10 Score=97.09 Aligned_cols=83 Identities=24% Similarity=0.311 Sum_probs=76.9
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEE-EEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKM-YLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i-~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
+.+..|||+||.+.++|..|.+.|+.||.|.+. .++++..||.++||+||.|.+.+.+.+|+..|||..+.++++.|.+
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~y 173 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSY 173 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEE
Confidence 455789999999999999999999999998764 7889999999999999999999999999999999999999999999
Q ss_pred cCCC
Q psy13227 242 SKST 245 (247)
Q Consensus 242 akp~ 245 (247)
+..+
T Consensus 174 a~k~ 177 (203)
T KOG0131|consen 174 AFKK 177 (203)
T ss_pred EEec
Confidence 8754
No 59
>KOG0109|consensus
Probab=99.04 E-value=2.8e-10 Score=101.17 Aligned_cols=72 Identities=28% Similarity=0.526 Sum_probs=69.1
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCCC
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKST 245 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp~ 245 (247)
..|||+|||..+++.+|+.||.+||.|..|.|+++ ||||...+...++.||..|+|+.|+|..|+|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999987 9999999999999999999999999999999999877
No 60
>KOG0153|consensus
Probab=98.98 E-value=1.6e-09 Score=98.31 Aligned_cols=82 Identities=21% Similarity=0.404 Sum_probs=72.3
Q ss_pred CcccCCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHH-hcCceeCCe
Q psy13227 157 YNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQY-LNGYGYDHL 235 (247)
Q Consensus 157 ~~~~~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~-LnG~~i~g~ 235 (247)
+.++.+....+|||++|...++|.+|+++|.+||+|.+|.+... +++|||+|.+++.|+.|... +|...|+|.
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecce
Confidence 33356667789999999999999999999999999999988765 35999999999999999876 776779999
Q ss_pred EEEEeecCC
Q psy13227 236 ILSVDWSKS 244 (247)
Q Consensus 236 ~L~V~~akp 244 (247)
+|.|.|+.|
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999998
No 61
>KOG0123|consensus
Probab=98.97 E-value=1.8e-09 Score=100.87 Aligned_cols=75 Identities=28% Similarity=0.444 Sum_probs=70.5
Q ss_pred EEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCC
Q psy13227 167 AIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKS 244 (247)
Q Consensus 167 tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp 244 (247)
.|||.||+++++..+|.++|+.||.|.+|++..+. .| ++|| ||.|.+.+.|.+||..|||..+.+..|.|....+
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 39999999999999999999999999999999996 56 9999 9999999999999999999999999999976654
No 62
>KOG0123|consensus
Probab=98.95 E-value=2.1e-09 Score=100.34 Aligned_cols=75 Identities=24% Similarity=0.408 Sum_probs=71.0
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCCC
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKST 245 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp~ 245 (247)
.+|||+ +++++.+|.++|+++|++.++++.+|. | +-|||||+|.+..+|++||..||...+.|+.+++.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 999999999999999999999999997 6 9999999999999999999999999999999999999865
Q ss_pred C
Q psy13227 246 N 246 (247)
Q Consensus 246 ~ 246 (247)
+
T Consensus 76 ~ 76 (369)
T KOG0123|consen 76 P 76 (369)
T ss_pred C
Confidence 4
No 63
>KOG4661|consensus
Probab=98.94 E-value=5.6e-09 Score=99.97 Aligned_cols=84 Identities=19% Similarity=0.309 Sum_probs=77.9
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
..-.++|||++|+..+.-.||+.||++||.|.-..|+.+..+--.+.|+||++.+..+|.++|..|+...+.|++|.|+-
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34557899999999999999999999999999999999977888899999999999999999999999999999999999
Q ss_pred cCCC
Q psy13227 242 SKST 245 (247)
Q Consensus 242 akp~ 245 (247)
++..
T Consensus 482 aKNE 485 (940)
T KOG4661|consen 482 AKNE 485 (940)
T ss_pred cccC
Confidence 8754
No 64
>KOG4206|consensus
Probab=98.94 E-value=3e-09 Score=91.61 Aligned_cols=77 Identities=23% Similarity=0.427 Sum_probs=71.2
Q ss_pred cEEEEeecCCCCCHHHHHH----HhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 166 TAIRISNLSVNTSENDLED----LVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~----lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
.||||.||++.+..++|+. ||++||.|..|...+ |.+.||=|||.|.+.+.|-.|+..|+|+.+-|..++|+|
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3999999999999999887 999999999987654 678899999999999999999999999999999999999
Q ss_pred cCCC
Q psy13227 242 SKST 245 (247)
Q Consensus 242 akp~ 245 (247)
|+.+
T Consensus 87 A~s~ 90 (221)
T KOG4206|consen 87 AKSD 90 (221)
T ss_pred ccCc
Confidence 9865
No 65
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.93 E-value=3.2e-09 Score=102.04 Aligned_cols=73 Identities=16% Similarity=0.338 Sum_probs=61.2
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhcc------------CCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCc
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQF------------GPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGY 230 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~f------------G~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~ 230 (247)
...++|||+|||+.+++++|.++|..| +.|..+.+ +..+|||||+|.+.++|..||. |||.
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~g~ 245 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LDSI 245 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CCCe
Confidence 455789999999999999999999975 23444443 3457999999999999999995 9999
Q ss_pred eeCCeEEEEeec
Q psy13227 231 GYDHLILSVDWS 242 (247)
Q Consensus 231 ~i~g~~L~V~~a 242 (247)
.|.|..|.|...
T Consensus 246 ~~~g~~l~v~r~ 257 (509)
T TIGR01642 246 IYSNVFLKIRRP 257 (509)
T ss_pred EeeCceeEecCc
Confidence 999999999754
No 66
>KOG4212|consensus
Probab=98.91 E-value=5.3e-09 Score=97.52 Aligned_cols=76 Identities=29% Similarity=0.420 Sum_probs=71.3
Q ss_pred cEEEEeecCCCCCHHHHHHHhh-ccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 166 TAIRISNLSVNTSENDLEDLVK-QFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~-~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
+.+||+|+|+++.+.||++||. +.|.|..|.|..|. +|++||+|.|+|.+++.+++|++.||.+.+.|+.|.|...
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 4699999999999999999997 67999999999995 8999999999999999999999999999999999998653
No 67
>KOG0132|consensus
Probab=98.88 E-value=4.3e-09 Score=103.57 Aligned_cols=74 Identities=24% Similarity=0.489 Sum_probs=69.8
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCCC
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKST 245 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp~ 245 (247)
+||||++|+.+++|.||..+|..||.|.+|.++-. +|+|||.+.++++|++|+..|+.+.+.++.|+|.|+..+
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 78999999999999999999999999999988655 689999999999999999999999999999999999754
No 68
>KOG0124|consensus
Probab=98.86 E-value=5.7e-09 Score=95.51 Aligned_cols=81 Identities=23% Similarity=0.361 Sum_probs=75.9
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...+.|||..+.++.+|+||+..|.-||+|..|.+.+++.++.++||+||+|.+......||..||-+.++|..|+|--+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 34578999999999999999999999999999999999988899999999999999999999999999999999999765
Q ss_pred C
Q psy13227 243 K 243 (247)
Q Consensus 243 k 243 (247)
-
T Consensus 288 v 288 (544)
T KOG0124|consen 288 V 288 (544)
T ss_pred c
Confidence 4
No 69
>KOG0146|consensus
Probab=98.86 E-value=4.7e-09 Score=92.67 Aligned_cols=79 Identities=28% Similarity=0.431 Sum_probs=71.6
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeC---CeEEEEe
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYD---HLILSVD 240 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~---g~~L~V~ 240 (247)
+.++|||+-|...-.|+|++.+|.+||.|.++.+.+.. .|.+||+|||.|.+.-+|+.||..|+|...+ ...|.|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 44689999999999999999999999999999999996 8999999999999999999999999998743 4568888
Q ss_pred ecC
Q psy13227 241 WSK 243 (247)
Q Consensus 241 ~ak 243 (247)
|+.
T Consensus 97 ~AD 99 (371)
T KOG0146|consen 97 FAD 99 (371)
T ss_pred ecc
Confidence 875
No 70
>KOG0109|consensus
Probab=98.84 E-value=3e-09 Score=94.75 Aligned_cols=75 Identities=24% Similarity=0.483 Sum_probs=70.7
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
.-+++|+|+||++.++.++|+..|.+||++..+.|++| |+||.|.-.++|..|++.||+.+++|+.++|+++
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 45689999999999999999999999999999999876 9999999999999999999999999999999998
Q ss_pred CCC
Q psy13227 243 KST 245 (247)
Q Consensus 243 kp~ 245 (247)
.++
T Consensus 148 tsr 150 (346)
T KOG0109|consen 148 TSR 150 (346)
T ss_pred ccc
Confidence 865
No 71
>KOG0533|consensus
Probab=98.84 E-value=1e-08 Score=90.26 Aligned_cols=80 Identities=26% Similarity=0.458 Sum_probs=74.4
Q ss_pred ccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCC
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKS 244 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp 244 (247)
.+.|+|.||+..+.++||++||..||.+.++.|..++ .|.+.|.|-|.|...+||.+|++.|||..++|..+.+....+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 3789999999999999999999999999999999996 899999999999999999999999999999999998887654
Q ss_pred C
Q psy13227 245 T 245 (247)
Q Consensus 245 ~ 245 (247)
.
T Consensus 162 ~ 162 (243)
T KOG0533|consen 162 P 162 (243)
T ss_pred c
Confidence 3
No 72
>KOG0110|consensus
Probab=98.83 E-value=2.4e-09 Score=104.50 Aligned_cols=83 Identities=23% Similarity=0.445 Sum_probs=77.0
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecC
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ak 243 (247)
..+.|.|.|||+..+-.+++.+|..||.|.+|+|+.....+.++|||||+|.+.++|.+|+..|...-|.|+.|.++||+
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 35799999999999999999999999999999999886677889999999999999999999999888999999999998
Q ss_pred CCC
Q psy13227 244 STN 246 (247)
Q Consensus 244 p~~ 246 (247)
..+
T Consensus 692 ~d~ 694 (725)
T KOG0110|consen 692 SDN 694 (725)
T ss_pred cch
Confidence 643
No 73
>KOG0151|consensus
Probab=98.83 E-value=1.2e-08 Score=99.71 Aligned_cols=83 Identities=24% Similarity=0.410 Sum_probs=74.6
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecC---CCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEE
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDK---TNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILS 238 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~---~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~ 238 (247)
++..++|||+||++.+++++|...|..||+|..+.++.-+ +..+.+-++||.|.++.||++|++.|+|..|.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4667899999999999999999999999999999887654 2355678999999999999999999999999999999
Q ss_pred EeecCC
Q psy13227 239 VDWSKS 244 (247)
Q Consensus 239 V~~akp 244 (247)
+-|+++
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999963
No 74
>KOG0110|consensus
Probab=98.77 E-value=1.7e-08 Score=98.66 Aligned_cols=79 Identities=29% Similarity=0.429 Sum_probs=70.3
Q ss_pred ccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCC---CceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTN---GLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~t---g~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
.++|||.||+++++.++|..+|...|.|.++.|...+.. -.|.|||||+|.+.++|+.|++.|+|+.++|+.|.|.+
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 344999999999999999999999999999988766522 13459999999999999999999999999999999999
Q ss_pred cC
Q psy13227 242 SK 243 (247)
Q Consensus 242 ak 243 (247)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 87
No 75
>KOG1457|consensus
Probab=98.76 E-value=1e-07 Score=82.42 Aligned_cols=84 Identities=23% Similarity=0.364 Sum_probs=69.6
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEee-cCCCCceeeEEEEEecCHHHHHHHHHHhcCceeC---CeEE
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSR-DKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYD---HLIL 237 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~-d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~---g~~L 237 (247)
++..+||||++||.++..-+|..||..|-.-....|-. ++...-++-+||++|.+.++|..|+..|||..++ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 46678999999999999999999999986655554432 2323345689999999999999999999999998 7889
Q ss_pred EEeecCCC
Q psy13227 238 SVDWSKST 245 (247)
Q Consensus 238 ~V~~akp~ 245 (247)
++++|+..
T Consensus 111 hiElAKSN 118 (284)
T KOG1457|consen 111 HIELAKSN 118 (284)
T ss_pred EeeehhcC
Confidence 99999854
No 76
>KOG4205|consensus
Probab=98.76 E-value=7.1e-09 Score=94.46 Aligned_cols=82 Identities=21% Similarity=0.360 Sum_probs=74.6
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
.+.++|||++|+++++++.|++.|..||.|..+.+++|+.+++++||+||+|.+.+....++. ..-+.|+|+.|.+.-+
T Consensus 4 ~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 4 GESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRA 82 (311)
T ss_pred cCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceec
Confidence 367899999999999999999999999999999999999999999999999999888888877 4567789999988887
Q ss_pred CCC
Q psy13227 243 KST 245 (247)
Q Consensus 243 kp~ 245 (247)
.|+
T Consensus 83 v~r 85 (311)
T KOG4205|consen 83 VSR 85 (311)
T ss_pred cCc
Confidence 775
No 77
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.65 E-value=2.2e-07 Score=71.06 Aligned_cols=79 Identities=19% Similarity=0.355 Sum_probs=70.4
Q ss_pred cEEEEeecCCCCCHHHHHHHhhc--cCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeC----CeEEEE
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQ--FGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYD----HLILSV 239 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~--fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~----g~~L~V 239 (247)
+||.|.|+|-..+.++|.+++.. .|....++|+.|..++.+.|||||.|.+.+.|.+-.+.++|..+. .++..|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 79999999999999999988864 367788999999989999999999999999999999999999875 566788
Q ss_pred eecCC
Q psy13227 240 DWSKS 244 (247)
Q Consensus 240 ~~akp 244 (247)
.||+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88864
No 78
>KOG0226|consensus
Probab=98.59 E-value=7.4e-08 Score=84.49 Aligned_cols=80 Identities=24% Similarity=0.393 Sum_probs=74.3
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
...+...||.+.|.-+++.+.|-..|.+|-......+++|+.||+++||+||.|.+..++.+|+..|||..++.++|.+.
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 34566789999999999999999999999998999999999999999999999999999999999999999999987654
No 79
>KOG4212|consensus
Probab=98.57 E-value=1.1e-07 Score=88.77 Aligned_cols=76 Identities=25% Similarity=0.317 Sum_probs=69.0
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
....++|+|.|||.++|+..|++-|..||.|....|+ +.|+++| .|.|.+.++|++|+..|||..++|+.|.|.|
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 3456889999999999999999999999999988873 4688887 8999999999999999999999999999987
Q ss_pred c
Q psy13227 242 S 242 (247)
Q Consensus 242 a 242 (247)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 4
No 80
>KOG4209|consensus
Probab=98.57 E-value=9.1e-08 Score=84.04 Aligned_cols=81 Identities=21% Similarity=0.345 Sum_probs=76.0
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
..+...+||+|+...++.+++...|..||.|.++.++.|+.+|.++||+||+|.+.+..+.++. |||..+.++.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 4667899999999999999999999999999999999999999999999999999999999999 999999999999887
Q ss_pred cC
Q psy13227 242 SK 243 (247)
Q Consensus 242 ak 243 (247)
.+
T Consensus 177 ~r 178 (231)
T KOG4209|consen 177 KR 178 (231)
T ss_pred ee
Confidence 54
No 81
>KOG4205|consensus
Probab=98.56 E-value=1.1e-07 Score=86.70 Aligned_cols=82 Identities=22% Similarity=0.351 Sum_probs=76.6
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
.....|||++||.++++.+|++.|.+||.|..+.++.|..+.+++||+||.|.+++.+.+++. ..-+.|+++.+.|..|
T Consensus 95 ~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 95 LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRA 173 (311)
T ss_pred cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeec
Confidence 345689999999999999999999999999999999999999999999999999999999988 6888999999999999
Q ss_pred CCC
Q psy13227 243 KST 245 (247)
Q Consensus 243 kp~ 245 (247)
.|+
T Consensus 174 ~pk 176 (311)
T KOG4205|consen 174 IPK 176 (311)
T ss_pred cch
Confidence 886
No 82
>KOG1548|consensus
Probab=98.55 E-value=2e-07 Score=84.78 Aligned_cols=81 Identities=22% Similarity=0.313 Sum_probs=73.7
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCee--------EEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeC
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTS--------KMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYD 233 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~--------~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~ 233 (247)
....+.|||+|||.++|.+++.++|++||.|. +|.|-++. .|..+|=|.+.|..+++..-|+..|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 34557799999999999999999999999876 37788885 6999999999999999999999999999999
Q ss_pred CeEEEEeecC
Q psy13227 234 HLILSVDWSK 243 (247)
Q Consensus 234 g~~L~V~~ak 243 (247)
|+.|+|+.|+
T Consensus 210 g~~~rVerAk 219 (382)
T KOG1548|consen 210 GKKLRVERAK 219 (382)
T ss_pred CcEEEEehhh
Confidence 9999999876
No 83
>KOG0116|consensus
Probab=98.47 E-value=3.6e-07 Score=86.37 Aligned_cols=83 Identities=24% Similarity=0.366 Sum_probs=69.5
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
+.+..+|||.|||.++++++|+++|..||.|....|..-...+...+||||+|.+...++.||.+ +-..+++++|.|+.
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 34455699999999999999999999999999887655432344449999999999999999996 57779999999998
Q ss_pred cCCC
Q psy13227 242 SKST 245 (247)
Q Consensus 242 akp~ 245 (247)
-++.
T Consensus 364 k~~~ 367 (419)
T KOG0116|consen 364 KRPG 367 (419)
T ss_pred cccc
Confidence 7764
No 84
>KOG0106|consensus
Probab=98.41 E-value=2.5e-07 Score=80.08 Aligned_cols=71 Identities=24% Similarity=0.446 Sum_probs=65.6
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCC
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKS 244 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp 244 (247)
..+||++|++.+.+.||..||..||.|..+.+. .||+||+|.+..+|..|+..||+..|.+..+.|+|++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 469999999999999999999999999988763 35999999999999999999999999999999999985
No 85
>KOG4660|consensus
Probab=98.32 E-value=4.5e-07 Score=86.83 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=64.1
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEE
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILS 238 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~ 238 (247)
....+|+|.|||..+++++|..+|+.||+|..|+. |-..+|..||+|.+..+|++|++.||+..+.|+.|.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 45579999999999999999999999999998764 555689999999999999999999999999888776
No 86
>KOG4454|consensus
Probab=98.28 E-value=3.3e-07 Score=79.04 Aligned_cols=77 Identities=25% Similarity=0.263 Sum_probs=69.5
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...||||.|+...++|+-|.++|-.-|+|.++.|..++ .+..+ ||||.|.++-...-|++.|||..+.+..|.|.+-
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 34689999999999999999999999999999999886 56667 9999999999999999999999988888777654
No 87
>KOG1190|consensus
Probab=98.20 E-value=1.7e-05 Score=73.80 Aligned_cols=76 Identities=25% Similarity=0.281 Sum_probs=69.3
Q ss_pred ccEEEEeecCCC-CCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecC
Q psy13227 165 TTAIRISNLSVN-TSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243 (247)
Q Consensus 165 ~~tl~V~nLp~~-~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ak 243 (247)
.+.|.|+||.+. ++.+.|..+|+.||.|.+|.|..++ +--|+|.|.+...|+-|+..|+|+.+.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 678999999755 7999999999999999999999886 2479999999999999999999999999999999998
Q ss_pred CC
Q psy13227 244 ST 245 (247)
Q Consensus 244 p~ 245 (247)
-.
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 53
No 88
>KOG0120|consensus
Probab=98.17 E-value=1.3e-06 Score=83.85 Aligned_cols=83 Identities=27% Similarity=0.445 Sum_probs=78.0
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
.....++|++||...+++.+.+++..||++....++.|..+|.++||||.+|.+......|+..|||..+++..|.|..|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q psy13227 243 KST 245 (247)
Q Consensus 243 kp~ 245 (247)
.+.
T Consensus 367 ~~g 369 (500)
T KOG0120|consen 367 IVG 369 (500)
T ss_pred hcc
Confidence 653
No 89
>KOG1995|consensus
Probab=98.07 E-value=7.7e-06 Score=74.90 Aligned_cols=85 Identities=24% Similarity=0.325 Sum_probs=77.5
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCee--------EEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeC
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTS--------KMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYD 233 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~--------~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~ 233 (247)
..+..+|||.+|+..+++.+|.++|.++|.|. .|.|-+|++|+.++|-|.|+|.+...|+.||.-+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45667899999999999999999999999875 4778899999999999999999999999999999999999
Q ss_pred CeEEEEeecCCCC
Q psy13227 234 HLILSVDWSKSTN 246 (247)
Q Consensus 234 g~~L~V~~akp~~ 246 (247)
+..|.|.++..++
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998887654
No 90
>KOG4211|consensus
Probab=98.04 E-value=1.5e-05 Score=75.63 Aligned_cols=77 Identities=22% Similarity=0.377 Sum_probs=65.8
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
.....|++.+|||++|++||.+||+-++ |.++.+.+ .+|+..|-|||+|.+.++++.|++ .+...+.++.|.|--+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 4556799999999999999999999995 66654444 589999999999999999999999 5888889999988665
Q ss_pred C
Q psy13227 243 K 243 (247)
Q Consensus 243 k 243 (247)
.
T Consensus 84 ~ 84 (510)
T KOG4211|consen 84 G 84 (510)
T ss_pred C
Confidence 4
No 91
>KOG0147|consensus
Probab=97.91 E-value=4.4e-06 Score=80.04 Aligned_cols=79 Identities=23% Similarity=0.337 Sum_probs=74.0
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
.+..++|+..|+-..++-||.+||+.+|.|..|.++.|+.++.++|.+||+|.+.+....||. |.|..+.|..|.|..+
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 456789999999999999999999999999999999999999999999999999999999996 9999999999998764
No 92
>KOG4210|consensus
Probab=97.85 E-value=9.1e-06 Score=73.57 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=74.3
Q ss_pred ccEEE-EeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecC
Q psy13227 165 TTAIR-ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243 (247)
Q Consensus 165 ~~tl~-V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ak 243 (247)
..++| |++|+..+++++|+.+|..+|.|..+++..++.++.++|||||.|.+...+..++.. +...+.++.+.+.+..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 34555 999999999999999999999999999999999999999999999999999999887 7888999999999988
Q ss_pred CCC
Q psy13227 244 STN 246 (247)
Q Consensus 244 p~~ 246 (247)
|++
T Consensus 263 ~~~ 265 (285)
T KOG4210|consen 263 PRP 265 (285)
T ss_pred CCc
Confidence 874
No 93
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.70 E-value=0.00015 Score=53.99 Aligned_cols=68 Identities=24% Similarity=0.309 Sum_probs=47.3
Q ss_pred cEEEEeecCCCCCHHHHH----HHhhccC-CeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 166 TAIRISNLSVNTSENDLE----DLVKQFG-PTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~----~lF~~fG-~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
+.|+|.|||.+.+...|+ .|+.-+| .|..|. .+-|+|.|.+.+.|.+|.+.|+|-.+-|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 579999999999887654 5666676 455442 2589999999999999999999999999999999
Q ss_pred ecC
Q psy13227 241 WSK 243 (247)
Q Consensus 241 ~ak 243 (247)
|..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 873
No 94
>KOG1457|consensus
Probab=97.70 E-value=3.6e-05 Score=66.81 Aligned_cols=66 Identities=21% Similarity=0.398 Sum_probs=54.9
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeC
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYD 233 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~ 233 (247)
.-.||||-||..+++|++|+.+|+.|.....++|. .+ .|. ..||++|.+.+.|..|+..|+|..+.
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~-~~-~g~--~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR-AR-GGM--PVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe-cC-CCc--ceEeecHHHHHHHHHHHHHhhcceec
Confidence 34689999999999999999999999876666552 22 444 38999999999999999999998763
No 95
>KOG4211|consensus
Probab=97.69 E-value=8.3e-05 Score=70.69 Aligned_cols=76 Identities=20% Similarity=0.324 Sum_probs=64.4
Q ss_pred ccEEEEeecCCCCCHHHHHHHhhccCCeeE-EEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSK-MYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~~fG~I~~-i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...|++.+||+.++++||.+||+..-.+.. |.++.++ .+++.|-|||.|.+.+.|+.|+.. |...|+++-|.|.-+
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 358999999999999999999998755544 6677775 678999999999999999999984 777889998888644
No 96
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.57 E-value=0.00019 Score=65.69 Aligned_cols=80 Identities=19% Similarity=0.388 Sum_probs=62.2
Q ss_pred CccEEEEeecCCCCCHHH----HH--HHhhccCCeeEEEEeecCCCC-ceeeEE--EEEecCHHHHHHHHHHhcCceeCC
Q psy13227 164 DTTAIRISNLSVNTSEND----LE--DLVKQFGPTSKMYLSRDKTNG-LCKGFA--YIHFKNKADAAKAIQYLNGYGYDH 234 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~d----L~--~lF~~fG~I~~i~l~~d~~tg-~skGfa--FV~F~s~e~A~~Ai~~LnG~~i~g 234 (247)
+-.-+||.+|++.+..++ |. ++|.+||.|..|.|-+...+- ...+.+ ||+|.+.++|.++|...+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 345689999998876554 43 789999999998775543111 112333 999999999999999999999999
Q ss_pred eEEEEeecC
Q psy13227 235 LILSVDWSK 243 (247)
Q Consensus 235 ~~L~V~~ak 243 (247)
+.|+..|..
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 999988764
No 97
>KOG4206|consensus
Probab=97.55 E-value=0.00031 Score=60.88 Aligned_cols=76 Identities=21% Similarity=0.388 Sum_probs=67.5
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeC-CeEEEEee
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYD-HLILSVDW 241 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~-g~~L~V~~ 241 (247)
.....+++.|||..++.+.|..+|..|.....++++..+ .+.|||+|.+...|..|...|+|..+- ...+.|.+
T Consensus 144 ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 144 PPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred CCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 445689999999999999999999999999999988765 679999999999999999999999887 77788877
Q ss_pred cC
Q psy13227 242 SK 243 (247)
Q Consensus 242 ak 243 (247)
++
T Consensus 219 a~ 220 (221)
T KOG4206|consen 219 AK 220 (221)
T ss_pred cC
Confidence 65
No 98
>KOG4849|consensus
Probab=97.53 E-value=6.5e-05 Score=68.90 Aligned_cols=74 Identities=22% Similarity=0.288 Sum_probs=65.9
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccC--CeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEE
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFG--PTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSV 239 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG--~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V 239 (247)
-.+||+||-|+++++||.+.+...| .+..+++..++.+|+++|||+|...+....++.++.|....|+|+.-.|
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 5799999999999999999888776 5778888899999999999999999999999999999999998875443
No 99
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.50 E-value=0.00032 Score=54.32 Aligned_cols=59 Identities=29% Similarity=0.440 Sum_probs=39.3
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCc
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGY 230 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~ 230 (247)
+.|+|.+++..++.++|+++|+.||.|..|.+.... --|||-|.+.+.|+.|+..+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhc
Confidence 578999999999999999999999999998876542 27999999999999999876544
No 100
>KOG3152|consensus
Probab=97.45 E-value=9.6e-05 Score=65.18 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=62.3
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCC--------Cceee----EEEEEecCHHHHHHHHHHhcCce
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTN--------GLCKG----FAYIHFKNKADAAKAIQYLNGYG 231 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~t--------g~skG----faFV~F~s~e~A~~Ai~~LnG~~ 231 (247)
....||++++|+.++..-|+++|+.||.|-+|+|.....+ |.+++ -|+|+|.+...|.+....||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3458999999999999999999999999999999876544 33332 36799999999999999999999
Q ss_pred eCCeE
Q psy13227 232 YDHLI 236 (247)
Q Consensus 232 i~g~~ 236 (247)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 101
>KOG0106|consensus
Probab=97.36 E-value=0.00019 Score=62.32 Aligned_cols=70 Identities=26% Similarity=0.396 Sum_probs=61.2
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
..+.+.|.|++..+.+.+|.+.|.++|.+....+ .++++||.|...++|..|+..|+|..+.++.|.+..
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 3467999999999999999999999999843322 357999999999999999999999999999999843
No 102
>KOG2314|consensus
Probab=97.31 E-value=0.00047 Score=66.70 Aligned_cols=75 Identities=24% Similarity=0.410 Sum_probs=60.0
Q ss_pred ccEEEEeecCCCC--CH----HHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeC-CeEE
Q psy13227 165 TTAIRISNLSVNT--SE----NDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYD-HLIL 237 (247)
Q Consensus 165 ~~tl~V~nLp~~~--te----~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~-g~~L 237 (247)
.+.|.|.|.|--- .- .-|..+|+++|.|..++++.+.++| ++||.|++|.+..+|+.|++.|||+.++ +..+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 3578899988532 22 2355789999999999999996555 9999999999999999999999999987 4444
Q ss_pred EEe
Q psy13227 238 SVD 240 (247)
Q Consensus 238 ~V~ 240 (247)
.|.
T Consensus 137 ~v~ 139 (698)
T KOG2314|consen 137 FVR 139 (698)
T ss_pred Eee
Confidence 443
No 103
>KOG0105|consensus
Probab=97.29 E-value=0.0013 Score=55.93 Aligned_cols=61 Identities=23% Similarity=0.346 Sum_probs=55.3
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeC
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYD 233 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~ 233 (247)
..|.|++||++.+.+||+++...-|.+....+.+| |++.|+|...++.+-|+..|+...+.
T Consensus 116 ~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 116 YRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 57899999999999999999999999999888777 38899999999999999999887654
No 104
>KOG4307|consensus
Probab=97.27 E-value=0.0015 Score=64.65 Aligned_cols=75 Identities=16% Similarity=0.390 Sum_probs=66.1
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCCee-EEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGPTS-KMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~I~-~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
+.|-+.|+|.+++-+||.+||..|-.+- +|.+-++ +.|...|-|.|.|.+.++|.+|...|++..|.++.+.+.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4799999999999999999999997654 4555555 5899999999999999999999999999999999988864
No 105
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.24 E-value=0.00093 Score=45.37 Aligned_cols=52 Identities=25% Similarity=0.528 Sum_probs=42.2
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHH
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAI 224 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai 224 (247)
+.|-|++.+.+..+. +...|..||.|..+.+... .-+.||.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 568899999876644 5558889999999988622 348999999999999985
No 106
>KOG1456|consensus
Probab=97.21 E-value=0.0095 Score=55.45 Aligned_cols=79 Identities=18% Similarity=0.171 Sum_probs=70.2
Q ss_pred CCCCccEEEEeecCCC-CCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEE
Q psy13227 161 RNDDTTAIRISNLSVN-TSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSV 239 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~-~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V 239 (247)
...+.+.+.|.+|... ++-+.|..+|-.||.|.+|.+++.+ .|-|.|++.+....++|+..||+..+-|.+|.|
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 3467789999999865 5668899999999999999998876 468999999999999999999999999999999
Q ss_pred eecCC
Q psy13227 240 DWSKS 244 (247)
Q Consensus 240 ~~akp 244 (247)
.+++-
T Consensus 358 ~~SkQ 362 (494)
T KOG1456|consen 358 CVSKQ 362 (494)
T ss_pred eeccc
Confidence 98873
No 107
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.04 E-value=0.0026 Score=48.96 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=52.4
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEE-EeecC------CCCceeeEEEEEecCHHHHHHHHHHhcCceeCCe-
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMY-LSRDK------TNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHL- 235 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~-l~~d~------~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~- 235 (247)
+.+.|.|-+.|+. ....+.+.|++||.|.+.. +.++. .......+-.|.|.++.+|.+||. .||..+.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4467889999998 5567788899999998764 11110 001123588999999999999999 699999874
Q ss_pred EEEEeecC
Q psy13227 236 ILSVDWSK 243 (247)
Q Consensus 236 ~L~V~~ak 243 (247)
.+-|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 55677764
No 108
>KOG1365|consensus
Probab=97.03 E-value=0.0013 Score=61.18 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=63.6
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCC-eeE--EEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGP-TSK--MYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~-I~~--i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
..|++.+||+..+.+||.++|..|.. |.. ++++.+. .|++.|-|||.|.+.++|..|....+.+....+.|.|-
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 47999999999999999999998864 433 7888884 79999999999999999999999887777778887774
No 109
>KOG1190|consensus
Probab=96.92 E-value=0.0018 Score=60.67 Aligned_cols=78 Identities=23% Similarity=0.266 Sum_probs=65.6
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCe-EEEEee
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHL-ILSVDW 241 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~-~L~V~~ 241 (247)
+.+.+|..+|+|.+++|++|+.+|..-|...+.+.. -++.+-+|++.+.+.++|-.|+-.++.+.++.. .|+|.|
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 455689999999999999999999988876655442 234456999999999999999999999988755 899999
Q ss_pred cCC
Q psy13227 242 SKS 244 (247)
Q Consensus 242 akp 244 (247)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 986
No 110
>KOG1548|consensus
Probab=96.87 E-value=0.0038 Score=57.35 Aligned_cols=77 Identities=19% Similarity=0.327 Sum_probs=59.3
Q ss_pred CCccEEEEeecC--C--CCCH-------HHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCce
Q psy13227 163 DDTTAIRISNLS--V--NTSE-------NDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYG 231 (247)
Q Consensus 163 ~~~~tl~V~nLp--~--~~te-------~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~ 231 (247)
...++|.+.|+= . ..+. ++|.+-..+||+|.+|.|.- ..+.|.+-|.|.+.++|..+|+.|+|..
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 445688888872 1 2232 34455568999999987642 3468999999999999999999999999
Q ss_pred eCCeEEEEeecC
Q psy13227 232 YDHLILSVDWSK 243 (247)
Q Consensus 232 i~g~~L~V~~ak 243 (247)
|+|+.|......
T Consensus 339 fdgRql~A~i~D 350 (382)
T KOG1548|consen 339 FDGRQLTASIWD 350 (382)
T ss_pred ecceEEEEEEeC
Confidence 999999877543
No 111
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.76 E-value=0.0076 Score=44.81 Aligned_cols=54 Identities=17% Similarity=0.310 Sum_probs=42.9
Q ss_pred EEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcC
Q psy13227 167 AIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229 (247)
Q Consensus 167 tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG 229 (247)
..+|+ +|..+...||.++|++||.|. |.++.|. -|||...+++.+..++..++-
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 45665 999999999999999999986 7777764 799999999999999988764
No 112
>KOG0120|consensus
Probab=96.50 E-value=0.0077 Score=58.31 Aligned_cols=63 Identities=16% Similarity=0.353 Sum_probs=51.2
Q ss_pred HHHHHhhccCCeeEEEEeecCCC---CceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecC
Q psy13227 181 DLEDLVKQFGPTSKMYLSRDKTN---GLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243 (247)
Q Consensus 181 dL~~lF~~fG~I~~i~l~~d~~t---g~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ak 243 (247)
+++.-+++||.|..|.+++.-.. .-..|--||+|.+.+++++|++.|+|..|.|+++...|-.
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 34445678999999999887222 3345778999999999999999999999999999887743
No 113
>KOG1456|consensus
Probab=96.47 E-value=0.019 Score=53.52 Aligned_cols=75 Identities=20% Similarity=0.283 Sum_probs=61.8
Q ss_pred cEEEEeecC--CCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeC-C-eEEEEee
Q psy13227 166 TAIRISNLS--VNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYD-H-LILSVDW 241 (247)
Q Consensus 166 ~tl~V~nLp--~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~-g-~~L~V~~ 241 (247)
..|.++=|+ +.++-+.|..+..+.|+|.+|.|.+. +|. -|.|+|.+.+.|++|...|||..|. | ..|+|+|
T Consensus 121 ~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIey 195 (494)
T KOG1456|consen 121 KVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEY 195 (494)
T ss_pred eEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccceeEEEEe
Confidence 345555554 55788999999999999999988765 454 5899999999999999999999854 4 5799999
Q ss_pred cCCC
Q psy13227 242 SKST 245 (247)
Q Consensus 242 akp~ 245 (247)
|+|.
T Consensus 196 AkP~ 199 (494)
T KOG1456|consen 196 AKPT 199 (494)
T ss_pred cCcc
Confidence 9985
No 114
>KOG2193|consensus
Probab=96.36 E-value=0.0026 Score=59.94 Aligned_cols=73 Identities=27% Similarity=0.351 Sum_probs=58.5
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccC-CeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCce-eCCeEEEEeecC
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFG-PTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYG-YDHLILSVDWSK 243 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG-~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~-i~g~~L~V~~ak 243 (247)
..+|++||++.++.+||..+|...- ....-+++ -.||+||++.+...|.+|++.++|.. +.|.++.|+.+-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 4699999999999999999997541 11111222 24799999999999999999999985 889999998877
Q ss_pred CC
Q psy13227 244 ST 245 (247)
Q Consensus 244 p~ 245 (247)
|+
T Consensus 75 ~k 76 (584)
T KOG2193|consen 75 PK 76 (584)
T ss_pred hH
Confidence 65
No 115
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.35 E-value=0.025 Score=46.33 Aligned_cols=70 Identities=17% Similarity=0.286 Sum_probs=50.7
Q ss_pred cEEEEeecCC------CCCH---HHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeE
Q psy13227 166 TAIRISNLSV------NTSE---NDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLI 236 (247)
Q Consensus 166 ~tl~V~nLp~------~~te---~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~ 236 (247)
.||.|+-+.+ ..++ .+|.+.|..||.+.-++++-+ --+|+|.+-+.|.+|+. |+|..+.|+.
T Consensus 28 aTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~ 98 (146)
T PF08952_consen 28 ATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRT 98 (146)
T ss_dssp -EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEE
T ss_pred ceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEE
Confidence 4777876662 2232 256677889998877776554 47899999999999999 8999999999
Q ss_pred EEEeecCC
Q psy13227 237 LSVDWSKS 244 (247)
Q Consensus 237 L~V~~akp 244 (247)
|.|..-.|
T Consensus 99 l~i~LKtp 106 (146)
T PF08952_consen 99 LKIRLKTP 106 (146)
T ss_dssp EEEEE---
T ss_pred EEEEeCCc
Confidence 99987665
No 116
>KOG2202|consensus
Probab=96.03 E-value=0.0031 Score=55.75 Aligned_cols=62 Identities=19% Similarity=0.359 Sum_probs=51.3
Q ss_pred HHHHHHhh-ccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 180 NDLEDLVK-QFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 180 ~dL~~lF~-~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
+||...|. +||.|..+.|-.+. .-.-.|-+||.|...++|++|+..||+..|.|+.|..+++
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34444445 89999998776664 4456789999999999999999999999999999998875
No 117
>KOG0128|consensus
Probab=96.01 E-value=0.0024 Score=64.40 Aligned_cols=78 Identities=21% Similarity=0.280 Sum_probs=71.7
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCC
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKS 244 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp 244 (247)
..++|+|+|+..+.++|+.++..+|.+.+..++..+ .|+++|.|||.|.+..++.+++...++..+.-..+.|..+.|
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 469999999999999999999999999999998886 799999999999999999999999888888888888887665
No 118
>KOG2416|consensus
Probab=96.00 E-value=0.0082 Score=58.67 Aligned_cols=77 Identities=21% Similarity=0.357 Sum_probs=62.2
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhcc-CCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCcee---CCeE
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQF-GPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGY---DHLI 236 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~f-G~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i---~g~~ 236 (247)
+...++.|||.||-.-+|.-+|+.|+.+- |.|... ..|+ -+..|||.|.+.++|...+..|||..| +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 44567899999999999999999999955 445544 3342 466999999999999999999999986 4677
Q ss_pred EEEeecC
Q psy13227 237 LSVDWSK 243 (247)
Q Consensus 237 L~V~~ak 243 (247)
|.+.|..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 8888864
No 119
>KOG0129|consensus
Probab=95.80 E-value=0.03 Score=53.94 Aligned_cols=64 Identities=13% Similarity=0.271 Sum_probs=48.8
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCC---CCceee---EEEEEecCHHHHHHHHHHh
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKT---NGLCKG---FAYIHFKNKADAAKAIQYL 227 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~---tg~skG---faFV~F~s~e~A~~Ai~~L 227 (247)
.-++.|||++||++++|+.|...|..||.+. +.++...+ --.++| |+|+.|.++.....-+...
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 4457899999999999999999999999865 55542211 123456 9999999988887766653
No 120
>KOG0128|consensus
Probab=95.75 E-value=0.00049 Score=69.26 Aligned_cols=71 Identities=25% Similarity=0.343 Sum_probs=61.0
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeC
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYD 233 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~ 233 (247)
.+..++||+||+..+.+.+|...|..+|.+..+++.....+++.+|+||+.|...+++.+||....+..++
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 34578999999999999999999999998887777655568999999999999999999999876665554
No 121
>KOG4307|consensus
Probab=95.55 E-value=0.019 Score=57.16 Aligned_cols=79 Identities=18% Similarity=0.131 Sum_probs=67.4
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeE-EEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSK-MYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~-i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
+.....|||..||..+.+.++.++|.....|.. |+|.+.+ +++.++-|||.|...+.+..|...-..+.+++++|+|+
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 355679999999999999999999987766665 8887775 88899999999999888888887667777888999997
Q ss_pred e
Q psy13227 241 W 241 (247)
Q Consensus 241 ~ 241 (247)
-
T Consensus 510 s 510 (944)
T KOG4307|consen 510 S 510 (944)
T ss_pred c
Confidence 4
No 122
>KOG1365|consensus
Probab=95.49 E-value=0.072 Score=49.90 Aligned_cols=70 Identities=17% Similarity=0.292 Sum_probs=53.8
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhcc----CCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCC
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQF----GPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDH 234 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~f----G~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g 234 (247)
.+.-.|++.+||+++++.|+.++|.+- |....|.++... .|+..|-|||.|..+++|+.|+.. |...++-
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGq 232 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQ 232 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhH
Confidence 344679999999999999999999732 244456555553 789999999999999999999984 4333333
No 123
>KOG1855|consensus
Probab=95.47 E-value=0.011 Score=55.76 Aligned_cols=69 Identities=20% Similarity=0.295 Sum_probs=56.6
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeec---CCC--Cce--------eeEEEEEecCHHHHHHHHHHhcC
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRD---KTN--GLC--------KGFAYIHFKNKADAAKAIQYLNG 229 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d---~~t--g~s--------kGfaFV~F~s~e~A~~Ai~~LnG 229 (247)
-.+++|.+-|||.+-.-+-|.+||+.+|.|..|+|..- ++. +.. +-+|||+|...+.|.+|.+.||-
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 36789999999999888999999999999999998765 222 222 45799999999999999998865
Q ss_pred ce
Q psy13227 230 YG 231 (247)
Q Consensus 230 ~~ 231 (247)
..
T Consensus 309 e~ 310 (484)
T KOG1855|consen 309 EQ 310 (484)
T ss_pred hh
Confidence 44
No 124
>KOG0129|consensus
Probab=95.41 E-value=0.038 Score=53.26 Aligned_cols=64 Identities=20% Similarity=0.258 Sum_probs=59.3
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhh-ccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHH
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVK-QFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQY 226 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~-~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~ 226 (247)
|...||||++||.-++-.+|-.+|. -||.|..+.|-.|++-+.++|-|=|+|.+...--+||..
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 5567999999999999999999998 799999999999988899999999999999999999984
No 125
>KOG0112|consensus
Probab=95.25 E-value=0.021 Score=58.26 Aligned_cols=77 Identities=22% Similarity=0.326 Sum_probs=66.4
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCC--eEEEEe
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDH--LILSVD 240 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g--~~L~V~ 240 (247)
...+.++|++|..++....|...|..||.|..|.+- .|. -||||.|.+...++.|+..|-|..+++ +.|+|.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~----hgq--~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR----HGQ--PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecc----cCC--cceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 455789999999999999999999999999987662 233 499999999999999999999999885 569999
Q ss_pred ecCCC
Q psy13227 241 WSKST 245 (247)
Q Consensus 241 ~akp~ 245 (247)
|+.+.
T Consensus 527 la~~~ 531 (975)
T KOG0112|consen 527 LASPP 531 (975)
T ss_pred cccCC
Confidence 88753
No 126
>KOG2068|consensus
Probab=95.19 E-value=0.0076 Score=55.19 Aligned_cols=80 Identities=20% Similarity=0.370 Sum_probs=60.6
Q ss_pred cEEEEeecCCCCC-HHHHH--HHhhccCCeeEEEEeecCC--CCc-eeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEE
Q psy13227 166 TAIRISNLSVNTS-ENDLE--DLVKQFGPTSKMYLSRDKT--NGL-CKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSV 239 (247)
Q Consensus 166 ~tl~V~nLp~~~t-e~dL~--~lF~~fG~I~~i~l~~d~~--tg~-skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V 239 (247)
.-+||.+|+.... +..|. +.|.+||.|..|.+.+++. .+. .-.-++|+|...++|..||...+|..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4578888887764 44554 6799999999998887752 111 1123799999999999999999999999988777
Q ss_pred eecCCC
Q psy13227 240 DWSKST 245 (247)
Q Consensus 240 ~~akp~ 245 (247)
.+..++
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 666543
No 127
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.83 E-value=0.061 Score=45.37 Aligned_cols=80 Identities=18% Similarity=0.227 Sum_probs=50.1
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhc-cCCe---eEEE--EeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCC--
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQ-FGPT---SKMY--LSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDH-- 234 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~-fG~I---~~i~--l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g-- 234 (247)
.+...|-|.+||+.++++++.+.+++ ++.. ..+. ............-|||.|.+.++...-...++|+.+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 44568999999999999999998887 6665 2332 11111111234579999999999999999999988642
Q ss_pred ---eEEEEeec
Q psy13227 235 ---LILSVDWS 242 (247)
Q Consensus 235 ---~~L~V~~a 242 (247)
....|++|
T Consensus 85 g~~~~~~VE~A 95 (176)
T PF03467_consen 85 GNEYPAVVEFA 95 (176)
T ss_dssp S-EEEEEEEE-
T ss_pred CCCcceeEEEc
Confidence 23456655
No 128
>KOG2135|consensus
Probab=94.71 E-value=0.026 Score=53.87 Aligned_cols=76 Identities=18% Similarity=0.322 Sum_probs=61.3
Q ss_pred CCccEEEEeecCCCC-CHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 163 DDTTAIRISNLSVNT-SENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~-te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
.+.+.|-+.-.+... +..+|...|.+||.|..|.+-.. --.|.|+|.+..+|-.|.. ..+..|+++.|+|.|
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFW 442 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEE
Confidence 355566666666655 55889999999999999987554 2378999999999977766 699999999999999
Q ss_pred cCCC
Q psy13227 242 SKST 245 (247)
Q Consensus 242 akp~ 245 (247)
-+|.
T Consensus 443 hnps 446 (526)
T KOG2135|consen 443 HNPS 446 (526)
T ss_pred ecCC
Confidence 8874
No 129
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.71 E-value=0.18 Score=35.47 Aligned_cols=54 Identities=20% Similarity=0.325 Sum_probs=44.5
Q ss_pred cEEEEeecCCCCCHHHHHHHhhcc---CCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHh
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQF---GPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~f---G~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~L 227 (247)
..|+|.++.. ++.+||+.+|..| ....+|.++-|. -|-|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4799999955 7788999999988 235679999885 5779999999999999764
No 130
>KOG0115|consensus
Probab=94.70 E-value=0.038 Score=49.08 Aligned_cols=63 Identities=24% Similarity=0.337 Sum_probs=55.4
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcC
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG 229 (247)
..|||.||+..++-+.|...|+.||+|.+..+.-| ..++..+-++|.|...-.|..|+..++-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhcc
Confidence 67999999999999999999999999998776666 3688888999999999999999987643
No 131
>KOG4676|consensus
Probab=93.82 E-value=0.1 Score=48.91 Aligned_cols=76 Identities=14% Similarity=0.273 Sum_probs=57.1
Q ss_pred EEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCC---CCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 167 AIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKT---NGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 167 tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~---tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
.|.|.||++.++.++++.||.-.|.|..+.|..+.. -....-.|||.|.+...+..|...-|-..++--.|.+-+.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 799999999999999999999999999988765321 1234568999999999999887744444444444444443
No 132
>KOG1996|consensus
Probab=93.78 E-value=0.2 Score=45.46 Aligned_cols=63 Identities=14% Similarity=0.229 Sum_probs=49.8
Q ss_pred HHHHHHhhccCCeeEEEEeecCCCCcee-eEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 180 NDLEDLVKQFGPTSKMYLSRDKTNGLCK-GFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 180 ~dL~~lF~~fG~I~~i~l~~d~~tg~sk-GfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
+++.+-..+||.|.+|.|...+.--... ---||+|...+.|-+|+--|||..|+|+.++..|.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 4566778899999998877664222222 24699999999999999999999999999887664
No 133
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.25 E-value=1 Score=35.20 Aligned_cols=67 Identities=15% Similarity=0.171 Sum_probs=49.4
Q ss_pred cEEEEee-cCCCCCHHHHHHHhhccC-CeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCC
Q psy13227 166 TAIRISN-LSVNTSENDLEDLVKQFG-PTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDH 234 (247)
Q Consensus 166 ~tl~V~n-Lp~~~te~dL~~lF~~fG-~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g 234 (247)
+.+.|-- .|..+.-++|..+.+.+- .|..++|++|. ..++-.+.+.|.+.++|..-...+||..++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444444 445555566766666553 57788998884 3467789999999999999999999999875
No 134
>KOG4660|consensus
Probab=92.92 E-value=0.16 Score=49.47 Aligned_cols=83 Identities=22% Similarity=0.354 Sum_probs=61.9
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhc----------------------------cCCeeEEEEeecCCCCceeeEEEEEe
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQ----------------------------FGPTSKMYLSRDKTNGLCKGFAYIHF 214 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~----------------------------fG~I~~i~l~~d~~tg~skGfaFV~F 214 (247)
+..+++-|.|++......||..++.. .|.-..++++.|-.+....|||||.|
T Consensus 359 ~~Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm 438 (549)
T KOG4660|consen 359 DRRTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINM 438 (549)
T ss_pred cchhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEee
Confidence 44466777777776666666655431 34445678888877778899999999
Q ss_pred cCHHHHHHHHHHhcCceeC----CeEEEEeecCCC
Q psy13227 215 KNKADAAKAIQYLNGYGYD----HLILSVDWSKST 245 (247)
Q Consensus 215 ~s~e~A~~Ai~~LnG~~i~----g~~L~V~~akp~ 245 (247)
.+.+++..+.+++||+.+. .++..+.||+-+
T Consensus 439 ~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQ 473 (549)
T KOG4660|consen 439 TSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQ 473 (549)
T ss_pred cCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhh
Confidence 9999999999999999754 455677777643
No 135
>KOG2253|consensus
Probab=92.43 E-value=0.2 Score=49.74 Aligned_cols=81 Identities=16% Similarity=0.172 Sum_probs=66.3
Q ss_pred ccCCCCCCCCCCCCcCCCcccCCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHH
Q psy13227 140 YVPPSLREGPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKAD 219 (247)
Q Consensus 140 yvpp~~r~~~~~~~~~~~~~~~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~ 219 (247)
|++|.+.-- . -....-++||+|+...+..+-+..++..+|.|.++..+. |+|..|.....
T Consensus 26 ~~~p~qp~~-~----------~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~ 85 (668)
T KOG2253|consen 26 YVVPIQPVF-Q----------PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIG 85 (668)
T ss_pred cccCCcccc-c----------CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHH
Confidence 888877655 1 124446899999999999999999999999887765432 99999999999
Q ss_pred HHHHHHHhcCceeCCeEEEEe
Q psy13227 220 AAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 220 A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
..+|+..|+-..++|..|.+.
T Consensus 86 ~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 86 DLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred HHHHHHHhcccCCCcchhhcc
Confidence 999999999888988776553
No 136
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.30 E-value=0.76 Score=32.91 Aligned_cols=60 Identities=13% Similarity=0.207 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHhhccCC-----eeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 174 SVNTSENDLEDLVKQFGP-----TSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 174 p~~~te~dL~~lF~~fG~-----I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
-..++..+|..++...+. |-+|.+..+ |+||+... +.|..++..|++..+.|+.|+|+.|
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 345788889888877654 456766443 89998874 5889999999999999999999865
No 137
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.97 E-value=0.79 Score=37.63 Aligned_cols=74 Identities=23% Similarity=0.401 Sum_probs=56.0
Q ss_pred CCCccEEEEeecCCCCCH-HHHH---HHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEE
Q psy13227 162 NDDTTAIRISNLSVNTSE-NDLE---DLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLIL 237 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te-~dL~---~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L 237 (247)
.....||-|.=|..++.. +||+ ..++.||+|.+|.+. | +--|.|.|.+...|=.|+.+++. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 456678999877766643 4444 557889999998763 3 33799999999999999998776 5667788
Q ss_pred EEeecC
Q psy13227 238 SVDWSK 243 (247)
Q Consensus 238 ~V~~ak 243 (247)
.+.|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 888854
No 138
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=91.90 E-value=0.075 Score=32.36 Aligned_cols=19 Identities=26% Similarity=0.779 Sum_probs=15.7
Q ss_pred eeeeeecc-CCccccCCCCc
Q psy13227 77 FISCRTCK-GAHFTNNCPFK 95 (247)
Q Consensus 77 ~~~Cr~C~-g~h~t~~CP~k 95 (247)
..+|++|+ ..||...||.+
T Consensus 8 ~Y~C~~C~~~GH~i~dCP~~ 27 (32)
T PF13696_consen 8 GYVCHRCGQKGHWIQDCPTN 27 (32)
T ss_pred CCEeecCCCCCccHhHCCCC
Confidence 57999993 46999999973
No 139
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.88 E-value=0.39 Score=40.88 Aligned_cols=61 Identities=21% Similarity=0.319 Sum_probs=44.8
Q ss_pred HHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhc--CceeCCeEEEEeecCCC
Q psy13227 179 ENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLN--GYGYDHLILSVDWSKST 245 (247)
Q Consensus 179 e~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~Ln--G~~i~g~~L~V~~akp~ 245 (247)
...|+++|..|+.+..+.+.+. -+-..|.|.+.+.|.+|...|+ +..++|..|+|-|+.+.
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred HHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4788999999999887766554 2357899999999999999999 99999999999988643
No 140
>KOG4285|consensus
Probab=91.59 E-value=0.86 Score=41.60 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=48.7
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeE
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLI 236 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~ 236 (247)
+=|-|-++++.- -..|..+|.+||.|.+.... ..-.|-+|.|.++-+|++||. .||..|+|..
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 345666777753 35677889999999876543 223499999999999999999 5999998865
No 141
>KOG0112|consensus
Probab=90.95 E-value=0.053 Score=55.37 Aligned_cols=78 Identities=12% Similarity=0.124 Sum_probs=63.9
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
.+.+||++||...+++.+|+..|..+|.|.+|.|-.-+ -+.---|+||.|.+...+.+|...+.+..|..-.+++.+.
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 45689999999999999999999999999998875543 2333459999999999999999999998876555555554
No 142
>KOG4210|consensus
Probab=89.47 E-value=0.21 Score=45.29 Aligned_cols=80 Identities=18% Similarity=0.118 Sum_probs=64.4
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...+++|++++.+++.+.++..++..+|......+........++|++++.|...+.+..++.....+...+..+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 45689999999999999988889999998777777666678899999999999999999999954445666655544433
No 143
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=89.02 E-value=0.18 Score=26.64 Aligned_cols=16 Identities=31% Similarity=0.953 Sum_probs=13.6
Q ss_pred eeeeeccC-CccccCCC
Q psy13227 78 ISCRTCKG-AHFTNNCP 93 (247)
Q Consensus 78 ~~Cr~C~g-~h~t~~CP 93 (247)
++|..|+. +|+...||
T Consensus 1 ~~C~~C~~~GH~~~~Cp 17 (18)
T PF00098_consen 1 RKCFNCGEPGHIARDCP 17 (18)
T ss_dssp SBCTTTSCSSSCGCTSS
T ss_pred CcCcCCCCcCcccccCc
Confidence 36999955 99999998
No 144
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=88.58 E-value=0.18 Score=32.68 Aligned_cols=18 Identities=33% Similarity=0.931 Sum_probs=15.2
Q ss_pred eeeeeeccC-CccccCCCC
Q psy13227 77 FISCRTCKG-AHFTNNCPF 94 (247)
Q Consensus 77 ~~~Cr~C~g-~h~t~~CP~ 94 (247)
.+.|..|.+ +|||.-||-
T Consensus 4 ~~~CqkC~~~GH~tyeC~~ 22 (42)
T PF13917_consen 4 RVRCQKCGQKGHWTYECPN 22 (42)
T ss_pred CCcCcccCCCCcchhhCCC
Confidence 467999954 999999995
No 145
>KOG0804|consensus
Probab=84.65 E-value=3.1 Score=39.92 Aligned_cols=68 Identities=22% Similarity=0.331 Sum_probs=58.6
Q ss_pred ccEEEEeecCCCCCHHHHHHHhhcc-CCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCC
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVKQF-GPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDH 234 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~~f-G~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g 234 (247)
.+.|.|-.+|-.++--||..|...| -.|..|++++|. --.+-..+|.|.+..+|..-...+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 6789999999999999999998876 468999999974 2345577999999999999999999998875
No 146
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=84.53 E-value=5.5 Score=28.24 Aligned_cols=55 Identities=15% Similarity=0.339 Sum_probs=42.3
Q ss_pred CCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEE
Q psy13227 176 NTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSV 239 (247)
Q Consensus 176 ~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V 239 (247)
.++-++++..|..|+- . .|..|+ || =||.|.+..+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDR-TG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecC-CE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3567899999999964 2 233443 33 379999999999999999999988777665
No 147
>KOG4574|consensus
Probab=79.52 E-value=1.4 Score=45.34 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=58.2
Q ss_pred EEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCcee--CCeEEEEeecCCC
Q psy13227 169 RISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGY--DHLILSVDWSKST 245 (247)
Q Consensus 169 ~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i--~g~~L~V~~akp~ 245 (247)
++.|..-..+...|-.+|+.||.+.++...++- ..|.|+|.+.+.|-.|++.|+|..+ -|-..+|.+|++-
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 344445566777889999999999998877774 3899999999999999999999974 5778899998864
No 148
>KOG2591|consensus
Probab=77.26 E-value=8.5 Score=38.07 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=47.7
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhc--cCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhc
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQ--FGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLN 228 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~--fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~Ln 228 (247)
...+.|.+.-+|+.+..++++.||.. +-.+.+|.+..+. -=||+|.+..||+.|.+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLR 233 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHH
Confidence 45578889999999999999999974 6677788776653 35899999999999976543
No 149
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=72.91 E-value=1.4 Score=27.51 Aligned_cols=20 Identities=35% Similarity=0.848 Sum_probs=12.0
Q ss_pred eeeec-cCCccccCCCCccch
Q psy13227 79 SCRTC-KGAHFTNNCPFKDSA 98 (247)
Q Consensus 79 ~Cr~C-~g~h~t~~CP~k~~~ 98 (247)
.|.-| +|.||.+.|=.|...
T Consensus 4 ~CprC~kg~Hwa~~C~sk~d~ 24 (36)
T PF14787_consen 4 LCPRCGKGFHWASECRSKTDV 24 (36)
T ss_dssp C-TTTSSSCS-TTT---TCCC
T ss_pred cCcccCCCcchhhhhhhhhcc
Confidence 48889 799999999877554
No 150
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=62.84 E-value=9.2 Score=31.82 Aligned_cols=72 Identities=21% Similarity=0.247 Sum_probs=51.0
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCcee
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGY 232 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i 232 (247)
.......+++.+++..+...++..+|..+|.+....+...........+.++.+.....+.......+...+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSRGNKKKI 292 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhccccceee
Confidence 345667899999999999999999999999998777766654444555555555555555555554444333
No 151
>smart00343 ZnF_C2HC zinc finger.
Probab=61.21 E-value=3.7 Score=23.19 Aligned_cols=16 Identities=31% Similarity=0.964 Sum_probs=13.1
Q ss_pred eeeecc-CCccccCCCC
Q psy13227 79 SCRTCK-GAHFTNNCPF 94 (247)
Q Consensus 79 ~Cr~C~-g~h~t~~CP~ 94 (247)
+|..|+ .+|+..+||.
T Consensus 1 ~C~~CG~~GH~~~~C~~ 17 (26)
T smart00343 1 KCYNCGKEGHIARDCPK 17 (26)
T ss_pred CCccCCCCCcchhhCCc
Confidence 488995 4899999993
No 152
>KOG2193|consensus
Probab=59.45 E-value=0.61 Score=44.41 Aligned_cols=73 Identities=21% Similarity=0.341 Sum_probs=59.0
Q ss_pred ccEEEEeecCCCCCHHHHHHHhhccCCeeEEEE-eecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYL-SRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l-~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
++.+-|.|+|+....+.|..|+..||.+..+.. ..+.+|- .--|+|.+.+.+..||..|||..+.+.-+.|.|
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta----vvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA----VVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH----HHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 345889999999999999999999999988754 3333322 233788899999999999999999888777765
No 153
>KOG4410|consensus
Probab=59.38 E-value=22 Score=32.55 Aligned_cols=48 Identities=25% Similarity=0.352 Sum_probs=36.2
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCe-eEEEEeecCCCCceeeEEEEEecCH
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPT-SKMYLSRDKTNGLCKGFAYIHFKNK 217 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I-~~i~l~~d~~tg~skGfaFV~F~s~ 217 (247)
-.+-||++||+.++.-.||+..+.+.+.+ .++.+ . .+.|-||+.|.+.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw--k----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW--K----GHFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee--e----cCCcceeEecCCc
Confidence 33569999999999999999999887754 33333 1 2467899999765
No 154
>KOG4483|consensus
Probab=57.11 E-value=25 Score=33.64 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=48.5
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCC-eeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHH
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGP-TSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQY 226 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~-I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~ 226 (247)
+-.+.|-|.++|.....+||...|..|+. --+|.++-|. ++|-.|.+...|..|+..
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 44568999999999999999999999975 4568888776 899999999999999873
No 155
>KOG4676|consensus
Probab=57.07 E-value=1.6 Score=41.31 Aligned_cols=63 Identities=10% Similarity=0.070 Sum_probs=50.7
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeC
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYD 233 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~ 233 (247)
.+++|.+|...+...++.++|..+|.+...++.. +...-+|-+.|........|+. ++|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 6899999999999999999999999998877643 3344567789988777777877 5776655
No 156
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=53.46 E-value=26 Score=24.81 Aligned_cols=64 Identities=8% Similarity=0.143 Sum_probs=44.9
Q ss_pred HHHHHHhhccC-CeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCCCC
Q psy13227 180 NDLEDLVKQFG-PTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTN 246 (247)
Q Consensus 180 ~dL~~lF~~fG-~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp~~ 246 (247)
++|.+-|...| .+..+.-+..+.++..--.-||+.....+. .+.++=..+.++.+.|+..+.+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~---k~i~~Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNN---KEIYKIKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccc---cceeehHhhCCeEEEEecCCCCC
Confidence 45666677666 577787777776677777888888765442 23455566889999999887664
No 157
>KOG2318|consensus
Probab=53.08 E-value=79 Score=31.63 Aligned_cols=79 Identities=16% Similarity=0.289 Sum_probs=57.8
Q ss_pred CCccEEEEeecCCC-CCHHHHHHHhhcc----CCeeEEEEeecC----------CCC-----------------------
Q psy13227 163 DDTTAIRISNLSVN-TSENDLEDLVKQF----GPTSKMYLSRDK----------TNG----------------------- 204 (247)
Q Consensus 163 ~~~~tl~V~nLp~~-~te~dL~~lF~~f----G~I~~i~l~~d~----------~tg----------------------- 204 (247)
..+..|-|-|+.|+ +.-.||.-+|+.| |.|.+|.|-... ..|
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 45568999999987 6778999888876 578877653221 011
Q ss_pred --------------ceeeEEEEEecCHHHHHHHHHHhcCceeCC--eEEEEee
Q psy13227 205 --------------LCKGFAYIHFKNKADAAKAIQYLNGYGYDH--LILSVDW 241 (247)
Q Consensus 205 --------------~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g--~~L~V~~ 241 (247)
.-.-||.|+|.+...|......++|..|.. .+|-+.|
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 123589999999999999999999999874 4444443
No 158
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=52.47 E-value=22 Score=32.50 Aligned_cols=58 Identities=14% Similarity=0.265 Sum_probs=45.2
Q ss_pred ccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecC-------CCCceeeEEEEEecCHHHHHH
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDK-------TNGLCKGFAYIHFKNKADAAK 222 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~-------~tg~skGfaFV~F~s~e~A~~ 222 (247)
.+.|.+.|+..+++--.+...|.+||+|.+|+++.+. ..........+.|-+++.+..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 4578999999999888888899999999999999875 112223466788888877654
No 159
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=50.60 E-value=8.6 Score=35.28 Aligned_cols=21 Identities=29% Similarity=0.716 Sum_probs=17.7
Q ss_pred eeeeeeccC-CccccCCCCccc
Q psy13227 77 FISCRTCKG-AHFTNNCPFKDS 97 (247)
Q Consensus 77 ~~~Cr~C~g-~h~t~~CP~k~~ 97 (247)
-.+|.-|++ +||.-+||-...
T Consensus 176 gY~CyRCGqkgHwIqnCpTN~D 197 (427)
T COG5222 176 GYVCYRCGQKGHWIQNCPTNQD 197 (427)
T ss_pred ceeEEecCCCCchhhcCCCCCC
Confidence 578999965 999999997644
No 160
>KOG4019|consensus
Probab=49.15 E-value=16 Score=31.11 Aligned_cols=76 Identities=22% Similarity=0.221 Sum_probs=52.7
Q ss_pred CCccEEEEeecCCCCCH-----HHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCe-E
Q psy13227 163 DDTTAIRISNLSVNTSE-----NDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHL-I 236 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te-----~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~-~ 236 (247)
+-.+++.+.++...+-. .....+|..|.......+.+. .++--|.|.+...|..|...+++..+.|. .
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~ 81 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNE 81 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCce
Confidence 34456888888876533 233466776665444444332 34566899999999999999999999887 6
Q ss_pred EEEeecCC
Q psy13227 237 LSVDWSKS 244 (247)
Q Consensus 237 L~V~~akp 244 (247)
+..-++.+
T Consensus 82 ~k~yfaQ~ 89 (193)
T KOG4019|consen 82 LKLYFAQP 89 (193)
T ss_pred EEEEEccC
Confidence 77766665
No 161
>PF15288 zf-CCHC_6: Zinc knuckle
Probab=45.75 E-value=11 Score=24.20 Aligned_cols=21 Identities=24% Similarity=0.809 Sum_probs=16.9
Q ss_pred eeeeeccC-Cccc--cCCCCccch
Q psy13227 78 ISCRTCKG-AHFT--NNCPFKDSA 98 (247)
Q Consensus 78 ~~Cr~C~g-~h~t--~~CP~k~~~ 98 (247)
++|..|+. .|.. ..||.+...
T Consensus 2 ~kC~~CG~~GH~~t~k~CP~~~~~ 25 (40)
T PF15288_consen 2 VKCKNCGAFGHMRTNKRCPMYCWS 25 (40)
T ss_pred ccccccccccccccCccCCCCCCC
Confidence 68999976 7887 579988754
No 162
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=44.07 E-value=40 Score=26.40 Aligned_cols=45 Identities=24% Similarity=0.350 Sum_probs=27.3
Q ss_pred CHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecC-HHHHHHHHH
Q psy13227 178 SENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKN-KADAAKAIQ 225 (247)
Q Consensus 178 te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s-~e~A~~Ai~ 225 (247)
+.+.|.+.|+.|.++. +..+.++ .-+.|++.|.|.+ -..-..|+.
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 4578999999998875 6666665 3678999999975 344444444
No 163
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=39.17 E-value=65 Score=22.59 Aligned_cols=19 Identities=16% Similarity=0.555 Sum_probs=16.2
Q ss_pred HHHHHHhhccCCeeEEEEe
Q psy13227 180 NDLEDLVKQFGPTSKMYLS 198 (247)
Q Consensus 180 ~dL~~lF~~fG~I~~i~l~ 198 (247)
.+|+++|+..|.|.-+++-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999877764
No 164
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=39.07 E-value=47 Score=23.78 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=44.2
Q ss_pred HHHHHHhhccC-CeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCCC
Q psy13227 180 NDLEDLVKQFG-PTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKST 245 (247)
Q Consensus 180 ~dL~~lF~~fG-~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp~ 245 (247)
.+|.+-|...| ++..++-+..+.++.+-..-||+.....+-.. .|+=..+.|+.+.|+-...+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 35677788777 57888888887777777788888875533332 45556688888888865443
No 165
>KOG0119|consensus
Probab=37.89 E-value=15 Score=35.87 Aligned_cols=19 Identities=26% Similarity=0.767 Sum_probs=16.0
Q ss_pred eeeecc-CCccccCCCCccc
Q psy13227 79 SCRTCK-GAHFTNNCPFKDS 97 (247)
Q Consensus 79 ~Cr~C~-g~h~t~~CP~k~~ 97 (247)
+|.+|. ..||+..|+|++.
T Consensus 287 ~c~~cg~~gH~~~dc~~~~q 306 (554)
T KOG0119|consen 287 VCKICGPLGHISIDCKVNDQ 306 (554)
T ss_pred cccccCCcccccccCCCccc
Confidence 789994 4899999999954
No 166
>KOG4454|consensus
Probab=37.28 E-value=7.2 Score=34.33 Aligned_cols=68 Identities=19% Similarity=0.427 Sum_probs=55.5
Q ss_pred CCccEEEEee----cCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCce
Q psy13227 163 DDTTAIRISN----LSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYG 231 (247)
Q Consensus 163 ~~~~tl~V~n----Lp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~ 231 (247)
....+++-++ |...++++.+...|+.-|++..+++.++. .|+++.++|+++.-....-.++....+..
T Consensus 78 e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred hhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 4445777777 78888999999999999999999999886 58899999999987777777777666543
No 167
>KOG2295|consensus
Probab=36.73 E-value=4.7 Score=39.76 Aligned_cols=73 Identities=19% Similarity=0.205 Sum_probs=55.7
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeE
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLI 236 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~ 236 (247)
..++|++.|++++++-.+|..++..+..+.++.+...-.-....-+++|+|.---....|+..||+..+....
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 3468999999999999999999998877777665443322344567889998777788888889988765433
No 168
>KOG1295|consensus
Probab=36.39 E-value=43 Score=31.62 Aligned_cols=67 Identities=19% Similarity=0.354 Sum_probs=47.3
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCC-eeEEEEeecCCC--CceeeEEEEEecCHHHHHHHHHHhcCcee
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGP-TSKMYLSRDKTN--GLCKGFAYIHFKNKADAAKAIQYLNGYGY 232 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~-I~~i~l~~d~~t--g~skGfaFV~F~s~e~A~~Ai~~LnG~~i 232 (247)
..+.|.+||+..++.+|.+-+.+|-. +...++.....+ ..-.+.+||.|.+.++...-...++|+.|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 57889999999999999888777643 222222211111 12257899999999998888888898875
No 169
>KOG3116|consensus
Probab=29.63 E-value=13 Score=30.72 Aligned_cols=21 Identities=29% Similarity=0.725 Sum_probs=17.8
Q ss_pred eeeeeec-cCCccccCCCCccc
Q psy13227 77 FISCRTC-KGAHFTNNCPFKDS 97 (247)
Q Consensus 77 ~~~Cr~C-~g~h~t~~CP~k~~ 97 (247)
.+.|.-| +-.|||+-|-.|-.
T Consensus 27 ~~rCQKClq~GHWtYECk~kRk 48 (177)
T KOG3116|consen 27 SARCQKCLQAGHWTYECKNKRK 48 (177)
T ss_pred chhHHHHHhhccceeeecCcee
Confidence 6799999 66999999997754
No 170
>PF15359 CDV3: Carnitine deficiency-associated protein 3
Probab=29.56 E-value=87 Score=25.14 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=11.8
Q ss_pred CCCccccCCCCCCC
Q psy13227 135 GGPAIYVPPSLREG 148 (247)
Q Consensus 135 ~~~~~yvpp~~r~~ 148 (247)
..+++|+||.+|..
T Consensus 84 ~~~gvY~PP~~R~~ 97 (129)
T PF15359_consen 84 TTSGVYRPPAARNT 97 (129)
T ss_pred CCCceecCcccccc
Confidence 45688999999987
No 171
>PF13790 DUF4182: Domain of unknown function (DUF4182)
Probab=28.12 E-value=31 Score=21.78 Aligned_cols=14 Identities=36% Similarity=0.907 Sum_probs=11.2
Q ss_pred eeeeeeccC--Ccccc
Q psy13227 77 FISCRTCKG--AHFTN 90 (247)
Q Consensus 77 ~~~Cr~C~g--~h~t~ 90 (247)
.|+|+.|.+ +||.+
T Consensus 3 tIvCq~C~~~Id~~e~ 18 (38)
T PF13790_consen 3 TIVCQHCNETIDHFET 18 (38)
T ss_pred EEEeccccceeeeecC
Confidence 689999976 88754
No 172
>KOG3476|consensus
Probab=27.97 E-value=12 Score=28.08 Aligned_cols=25 Identities=28% Similarity=0.886 Sum_probs=20.1
Q ss_pred eeeeeec------cCCccccCCCCccchhhh
Q psy13227 77 FISCRTC------KGAHFTNNCPFKDSALFL 101 (247)
Q Consensus 77 ~~~Cr~C------~g~h~t~~CP~k~~~~~~ 101 (247)
+-+|||| .|.||-.-|-|+.-.-++
T Consensus 54 ~~kC~iCk~~vHQ~GshYC~tCAY~KgiCAM 84 (100)
T KOG3476|consen 54 LAKCRICKQLVHQPGSHYCQTCAYKKGICAM 84 (100)
T ss_pred cchhHHHHHHhcCCcchhHhHhhhhhhHHHH
Confidence 5789999 488999999999765433
No 173
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=26.10 E-value=36 Score=25.50 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=19.6
Q ss_pred ccEEEEeecCCCCCHHHHHHHhh
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVK 187 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~ 187 (247)
.++|.|+|||...++++|++.+.
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeEE
Confidence 35899999999999999997653
No 174
>KOG4365|consensus
Probab=25.33 E-value=11 Score=36.22 Aligned_cols=76 Identities=12% Similarity=-0.102 Sum_probs=55.3
Q ss_pred EEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecC
Q psy13227 167 AIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243 (247)
Q Consensus 167 tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ak 243 (247)
..++..|+-..+++++.-+|..||-|..+.+-+.-..|...-.+|++... .++..+|..+.-..+.+..++|.++.
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 45677888899999999999999999988776665556667778887653 45566666555555666666666654
No 175
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=24.35 E-value=1e+02 Score=21.54 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=23.4
Q ss_pred EEEEEecCHHHHHHHHHHhcCceeCCeE
Q psy13227 209 FAYIHFKNKADAAKAIQYLNGYGYDHLI 236 (247)
Q Consensus 209 faFV~F~s~e~A~~Ai~~LnG~~i~g~~ 236 (247)
+.+|.|.|..+|.+|-+.|....+..+.
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 6889999999999999988877765544
No 176
>PRK10905 cell division protein DamX; Validated
Probab=21.03 E-value=2.9e+02 Score=25.74 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=37.9
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCcee-eEEEEEecCHHHHHHHHHHhcC
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCK-GFAYIHFKNKADAAKAIQYLNG 229 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~sk-GfaFV~F~s~e~A~~Ai~~LnG 229 (247)
....+|-|..+ .+++.|+.|..+.|- ....+......|+.. -.-+-.|.++++|.+|+..|-.
T Consensus 245 a~~YTLQL~A~---Ss~~~l~~fakKlgL-~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 245 SSHYTLQLSSS---SNYDNLNGWAKKENL-KNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred CCceEEEEEec---CCHHHHHHHHHHcCC-CceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCH
Confidence 34456655555 456778888777753 322233332344422 2234478999999999998754
No 177
>PRK11901 hypothetical protein; Reviewed
Probab=20.12 E-value=2.4e+02 Score=26.21 Aligned_cols=63 Identities=17% Similarity=0.224 Sum_probs=39.9
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEE--EEEecCHHHHHHHHHHhcCc
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFA--YIHFKNKADAAKAIQYLNGY 230 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfa--FV~F~s~e~A~~Ai~~LnG~ 230 (247)
....+|-+.. ..+++.|..|...++ +..+++......|+. .|. |-.|.+.++|..|+..|--.
T Consensus 243 ~~~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 243 ASHYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CCCeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHH
Confidence 3444555544 456788888887775 344544444334443 343 34789999999999987643
Done!