Query psy13227
Match_columns 247
No_of_seqs 330 out of 1891
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 23:23:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 2.9E-22 1E-26 151.9 12.2 83 163-245 17-99 (99)
2 2cq0_A Eukaryotic translation 99.8 1.3E-20 4.3E-25 142.5 12.8 87 160-246 10-96 (103)
3 3md1_A Nuclear and cytoplasmic 99.8 2.2E-20 7.6E-25 135.3 12.7 82 166-247 2-83 (83)
4 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.9E-20 6.6E-25 136.8 12.1 84 163-246 4-87 (87)
5 2lkz_A RNA-binding protein 5; 99.8 6.5E-21 2.2E-25 143.9 9.1 84 161-244 5-94 (95)
6 2cpz_A CUG triplet repeat RNA- 99.8 6.6E-20 2.2E-24 141.3 14.2 85 162-246 22-106 (115)
7 2dgo_A Cytotoxic granule-assoc 99.8 6.6E-20 2.3E-24 141.2 14.2 86 161-246 11-96 (115)
8 2lxi_A RNA-binding protein 10; 99.8 3.5E-21 1.2E-25 143.5 6.7 83 165-247 1-85 (91)
9 3s8s_A Histone-lysine N-methyl 99.8 5E-20 1.7E-24 142.3 12.8 82 164-245 5-86 (110)
10 2do4_A Squamous cell carcinoma 99.8 1.3E-19 4.4E-24 136.2 13.7 85 162-247 14-98 (100)
11 2e5h_A Zinc finger CCHC-type a 99.8 6.5E-20 2.2E-24 136.0 11.7 82 162-243 13-94 (94)
12 2cpe_A RNA-binding protein EWS 99.8 6.3E-20 2.1E-24 140.9 11.7 86 161-246 11-104 (113)
13 1p27_B RNA-binding protein 8A; 99.8 6.2E-20 2.1E-24 139.2 11.4 86 162-247 20-105 (106)
14 1x5u_A Splicing factor 3B subu 99.8 6.9E-20 2.4E-24 138.7 11.4 86 161-246 11-96 (105)
15 2cqc_A Arginine/serine-rich sp 99.8 1.5E-19 5.2E-24 134.1 13.0 83 162-244 12-94 (95)
16 3p5t_L Cleavage and polyadenyl 99.8 1.6E-20 5.5E-25 139.0 7.2 81 166-246 2-84 (90)
17 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.1E-19 3.7E-24 132.2 11.3 81 163-243 5-85 (85)
18 1whw_A Hypothetical protein ri 99.8 1.1E-19 3.6E-24 136.3 11.3 85 162-246 5-89 (99)
19 2dnz_A Probable RNA-binding pr 99.8 1.1E-19 3.6E-24 135.1 11.2 84 163-246 3-86 (95)
20 1x4h_A RNA-binding protein 28; 99.8 1.4E-19 4.9E-24 138.1 12.2 85 162-246 12-102 (111)
21 2cph_A RNA binding motif prote 99.8 1.2E-19 4.3E-24 137.6 11.4 86 161-246 11-98 (107)
22 1x5s_A Cold-inducible RNA-bind 99.8 9E-20 3.1E-24 137.4 10.5 85 162-246 9-93 (102)
23 2dnm_A SRP46 splicing factor; 99.8 8E-20 2.7E-24 138.0 10.0 86 161-246 9-94 (103)
24 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1E-19 3.5E-24 137.0 10.5 85 162-246 9-93 (102)
25 1oo0_B CG8781-PA, drosophila Y 99.8 1.2E-19 4.2E-24 138.6 11.1 86 161-246 22-107 (110)
26 2x1f_A MRNA 3'-END-processing 99.8 1.6E-19 5.6E-24 134.8 11.4 82 165-246 2-83 (96)
27 1x5t_A Splicing factor 3B subu 99.8 8.9E-20 3.1E-24 135.8 9.8 84 163-246 3-87 (96)
28 2dgs_A DAZ-associated protein 99.8 2E-19 7E-24 134.9 11.7 84 162-246 7-90 (99)
29 2khc_A Testis-specific RNP-typ 99.8 3.8E-19 1.3E-23 137.5 13.5 83 161-243 36-118 (118)
30 2d9p_A Polyadenylate-binding p 99.8 2.4E-19 8.1E-24 135.4 12.1 84 161-246 11-94 (103)
31 2jrs_A RNA-binding protein 39; 99.8 2E-19 7E-24 138.0 11.3 86 162-247 23-108 (108)
32 2cpf_A RNA binding motif prote 99.8 2E-19 6.8E-24 134.5 10.7 84 163-246 3-89 (98)
33 2dng_A Eukaryotic translation 99.8 4.6E-19 1.6E-23 134.0 12.8 83 162-246 12-94 (103)
34 4f25_A Polyadenylate-binding p 99.8 3.3E-19 1.1E-23 138.1 12.2 80 165-246 5-84 (115)
35 2dh8_A DAZ-associated protein 99.8 1.8E-19 6.2E-24 136.5 10.5 85 161-246 12-96 (105)
36 4a8x_A RNA-binding protein wit 99.8 2.5E-19 8.7E-24 130.9 10.7 84 164-247 3-87 (88)
37 2div_A TRNA selenocysteine ass 99.8 1.8E-19 6.2E-24 135.0 10.1 85 162-246 6-95 (99)
38 2dnh_A Bruno-like 5, RNA bindi 99.8 5.9E-19 2E-23 133.5 13.0 84 162-246 12-98 (105)
39 2dgp_A Bruno-like 4, RNA bindi 99.8 2.1E-19 7E-24 136.3 10.4 85 162-246 10-97 (106)
40 1wi8_A EIF-4B, eukaryotic tran 99.8 3.4E-19 1.2E-23 135.0 11.5 82 163-246 13-95 (104)
41 3ucg_A Polyadenylate-binding p 99.8 2.1E-19 7.2E-24 131.8 9.9 82 164-246 5-86 (89)
42 2ywk_A Putative RNA-binding pr 99.8 4.2E-19 1.4E-23 131.8 11.6 82 162-244 13-94 (95)
43 3ns6_A Eukaryotic translation 99.8 4E-20 1.4E-24 139.8 6.1 82 164-245 5-93 (100)
44 2la6_A RNA-binding protein FUS 99.8 5E-19 1.7E-23 132.9 12.0 82 162-243 10-99 (99)
45 2cpi_A CCR4-NOT transcription 99.8 4.6E-19 1.6E-23 136.3 11.8 86 161-246 11-102 (111)
46 2cq3_A RNA-binding protein 9; 99.8 1E-18 3.4E-23 132.0 13.5 83 162-246 12-94 (103)
47 2cqd_A RNA-binding region cont 99.8 5.5E-19 1.9E-23 136.3 11.9 84 161-245 13-96 (116)
48 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.1E-18 3.8E-23 131.7 13.3 84 161-246 11-94 (103)
49 3ulh_A THO complex subunit 4; 99.8 8.1E-19 2.8E-23 133.2 12.6 82 162-244 26-107 (107)
50 2do0_A HnRNP M, heterogeneous 99.8 1.4E-18 4.8E-23 133.3 13.8 83 162-245 12-94 (114)
51 2cqp_A RNA-binding protein 12; 99.8 4.8E-19 1.6E-23 132.4 10.5 84 163-246 13-96 (98)
52 2dgx_A KIAA0430 protein; RRM d 99.8 6.5E-19 2.2E-23 131.9 10.8 82 163-247 7-92 (96)
53 3n9u_C Cleavage and polyadenyl 99.8 4E-19 1.4E-23 145.4 10.4 83 163-245 53-137 (156)
54 2fy1_A RNA-binding motif prote 99.8 5.2E-19 1.8E-23 137.4 10.4 84 162-246 4-87 (116)
55 2kxn_B Transformer-2 protein h 99.8 3.7E-19 1.3E-23 141.0 9.7 86 162-247 43-128 (129)
56 2hgl_A HNRPF protein, heteroge 99.8 2E-19 6.9E-24 144.3 8.1 82 161-244 40-124 (136)
57 2dhg_A TRNA selenocysteine ass 99.8 4.7E-19 1.6E-23 133.8 9.6 84 162-246 6-91 (104)
58 2cqg_A TDP-43, TAR DNA-binding 99.8 2.6E-18 8.9E-23 129.7 13.6 84 161-246 11-94 (103)
59 3ex7_B RNA-binding protein 8A; 99.8 4.6E-19 1.6E-23 138.5 9.7 85 162-246 19-103 (126)
60 1p1t_A Cleavage stimulation fa 99.8 3.8E-19 1.3E-23 134.2 8.9 84 163-246 6-89 (104)
61 1u6f_A Tcubp1, RNA-binding pro 99.8 1.1E-18 3.8E-23 138.5 12.0 85 162-246 39-123 (139)
62 2dgv_A HnRNP M, heterogeneous 99.8 1.1E-18 3.7E-23 128.9 10.9 82 163-246 6-87 (92)
63 1x5o_A RNA binding motif, sing 99.8 2E-18 6.9E-23 132.6 12.8 85 161-246 21-113 (114)
64 1x4a_A Splicing factor, argini 99.8 3.5E-18 1.2E-22 130.3 14.0 82 162-246 19-100 (109)
65 3s7r_A Heterogeneous nuclear r 99.8 1.7E-18 5.8E-23 126.7 11.8 80 162-242 8-87 (87)
66 2kt5_A RNA and export factor-b 99.8 5E-18 1.7E-22 132.5 14.9 84 162-246 32-115 (124)
67 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.3E-18 7.9E-23 139.5 13.2 84 163-246 37-120 (156)
68 2dgw_A Probable RNA-binding pr 99.8 2.8E-18 9.6E-23 126.7 12.5 83 162-247 7-89 (91)
69 2dis_A Unnamed protein product 99.8 7.7E-19 2.6E-23 133.8 9.1 85 162-246 5-93 (109)
70 2m2b_A RNA-binding protein 10; 99.8 3.7E-19 1.3E-23 140.7 7.1 83 163-246 21-109 (131)
71 2jwn_A Embryonic polyadenylate 99.8 2.2E-18 7.5E-23 134.3 11.3 83 163-246 34-116 (124)
72 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4.5E-19 1.5E-23 133.8 7.0 83 163-247 17-100 (100)
73 2ek1_A RNA-binding protein 12; 99.8 8.6E-19 2.9E-23 130.1 8.5 82 163-244 13-94 (95)
74 2cq4_A RNA binding motif prote 99.8 6.4E-19 2.2E-23 135.5 8.0 82 163-245 23-104 (114)
75 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.7E-18 9.3E-23 140.8 12.2 85 162-246 69-153 (165)
76 1x4e_A RNA binding motif, sing 99.8 3.5E-19 1.2E-23 129.8 6.1 82 163-244 3-84 (85)
77 1x4b_A Heterogeneous nuclear r 99.8 1.6E-18 5.6E-23 133.6 10.2 83 163-246 25-107 (116)
78 2ki2_A SS-DNA binding protein 99.8 2.6E-19 9E-24 131.8 5.3 80 166-246 2-81 (90)
79 2err_A Ataxin-2-binding protei 99.8 1.9E-18 6.5E-23 132.5 10.3 84 161-246 25-108 (109)
80 1why_A Hypothetical protein ri 99.8 4.2E-18 1.4E-22 127.3 11.5 80 162-247 14-95 (97)
81 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.9E-18 1.3E-22 134.9 11.9 81 162-242 60-140 (140)
82 2fc8_A NCL protein; structure 99.8 5.5E-18 1.9E-22 127.5 12.2 83 161-246 11-93 (102)
83 2rs2_A Musashi-1, RNA-binding 99.8 2E-18 6.8E-23 132.5 9.8 83 163-246 23-105 (109)
84 2kn4_A Immunoglobulin G-bindin 99.8 1.8E-18 6.2E-23 140.0 10.0 84 163-246 68-151 (158)
85 1s79_A Lupus LA protein; RRM, 99.8 1.7E-18 5.7E-23 132.3 9.1 80 162-243 8-87 (103)
86 2fc9_A NCL protein; structure 99.8 4.8E-18 1.6E-22 127.8 11.2 81 162-246 12-92 (101)
87 2mss_A Protein (musashi1); RNA 99.8 9.8E-19 3.4E-23 124.5 6.3 75 167-242 1-75 (75)
88 2lea_A Serine/arginine-rich sp 99.8 9.7E-19 3.3E-23 139.5 6.9 85 162-246 44-128 (135)
89 1x4c_A Splicing factor, argini 99.8 1E-17 3.5E-22 128.0 12.3 77 163-246 13-94 (108)
90 1sjq_A Polypyrimidine tract-bi 99.7 3.8E-18 1.3E-22 131.3 9.0 78 163-246 14-93 (105)
91 2cpy_A RNA-binding protein 12; 99.7 2.8E-18 9.7E-23 132.4 8.0 81 163-245 13-94 (114)
92 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.3E-18 4.5E-23 124.1 5.7 77 166-243 1-77 (77)
93 2db1_A Heterogeneous nuclear r 99.7 7.8E-18 2.7E-22 131.1 10.1 81 162-244 14-97 (118)
94 1fj7_A Nucleolin RBD1, protein 99.7 1E-18 3.4E-23 131.5 4.3 82 163-246 15-96 (101)
95 1wg5_A Heterogeneous nuclear r 99.7 9.6E-18 3.3E-22 127.4 9.7 82 162-245 12-94 (104)
96 1fjc_A Nucleolin RBD2, protein 99.7 9.3E-18 3.2E-22 124.9 9.4 81 162-247 13-93 (96)
97 1wel_A RNA-binding protein 12; 99.7 3.5E-18 1.2E-22 133.7 7.3 83 162-245 22-104 (124)
98 1x4d_A Matrin 3; structural ge 99.7 1.1E-17 3.8E-22 127.9 9.5 79 162-246 12-93 (102)
99 2nlw_A Eukaryotic translation 99.7 6.8E-18 2.3E-22 128.5 8.3 81 163-245 13-100 (105)
100 2cpj_A Non-POU domain-containi 99.7 1.7E-17 5.7E-22 124.5 10.3 79 162-246 12-90 (99)
101 2dnq_A RNA-binding protein 4B; 99.7 2E-17 7E-22 121.9 10.5 76 163-246 6-81 (90)
102 1nu4_A U1A RNA binding domain; 99.7 8.1E-18 2.8E-22 125.3 8.3 82 162-246 5-90 (97)
103 1x4g_A Nucleolysin TIAR; struc 99.7 2.1E-17 7.2E-22 126.1 10.8 79 162-246 22-100 (109)
104 1wez_A HnRNP H', FTP-3, hetero 99.7 1.3E-17 4.6E-22 126.7 9.6 80 163-245 13-92 (102)
105 3q2s_C Cleavage and polyadenyl 99.7 5.5E-18 1.9E-22 146.7 8.3 81 164-244 67-149 (229)
106 2la4_A Nuclear and cytoplasmic 99.7 1.2E-17 4.1E-22 125.6 9.1 77 163-245 25-101 (101)
107 2cq1_A PTB-like protein L; RRM 99.7 3.7E-17 1.3E-21 124.6 11.8 79 162-246 12-92 (101)
108 2e5j_A Methenyltetrahydrofolat 99.7 2.2E-17 7.5E-22 123.5 10.3 80 163-247 17-96 (97)
109 2ytc_A PRE-mRNA-splicing facto 99.7 2.3E-17 8E-22 119.9 10.0 76 162-243 9-85 (85)
110 2a3j_A U1 small nuclear ribonu 99.7 1.7E-17 5.9E-22 131.5 9.7 81 163-246 27-111 (127)
111 2lcw_A RNA-binding protein FUS 99.6 4E-19 1.4E-23 137.2 0.0 84 163-246 5-96 (116)
112 2dgt_A RNA-binding protein 30; 99.7 6.3E-17 2.2E-21 119.7 11.9 77 162-246 7-83 (92)
113 2wbr_A GW182, gawky, LD47780P; 99.7 2.3E-17 7.8E-22 122.9 9.4 73 165-243 7-79 (89)
114 2cpx_A Hypothetical protein FL 99.7 2.9E-18 1E-22 131.7 4.8 84 163-246 23-106 (115)
115 1wex_A Hypothetical protein (r 99.7 3E-17 1E-21 125.7 10.2 79 162-246 12-92 (104)
116 2hvz_A Splicing factor, argini 99.7 1.3E-17 4.5E-22 125.4 7.9 76 166-246 1-76 (101)
117 3md3_A Nuclear and cytoplasmic 99.7 7.2E-17 2.5E-21 129.3 12.8 82 163-244 85-166 (166)
118 2jvo_A Nucleolar protein 3; nu 99.7 3.4E-17 1.2E-21 125.6 10.3 77 162-246 28-104 (108)
119 2xnq_A Nuclear polyadenylated 99.7 5.9E-17 2E-21 121.7 11.4 76 163-246 20-96 (97)
120 3r27_A HnRNP L, heterogeneous 99.7 3.6E-17 1.2E-21 124.7 10.2 77 163-245 19-97 (100)
121 1fxl_A Paraneoplastic encephal 99.7 8.4E-17 2.9E-21 129.0 12.6 82 165-246 2-83 (167)
122 2jvr_A Nucleolar protein 3; RN 99.7 3E-17 1E-21 127.3 9.6 79 164-246 27-106 (111)
123 2cpd_A Apobec-1 stimulating pr 99.7 1.3E-16 4.5E-21 119.5 12.8 77 162-246 12-90 (99)
124 2dgu_A Heterogeneous nuclear r 99.7 7.2E-17 2.5E-21 122.0 11.3 76 163-246 9-84 (103)
125 4f02_A Polyadenylate-binding p 99.7 7.4E-17 2.5E-21 136.8 12.6 83 163-245 13-95 (213)
126 1b7f_A Protein (SXL-lethal pro 99.7 5.7E-17 2E-21 130.6 11.3 82 165-246 3-84 (168)
127 2ad9_A Polypyrimidine tract-bi 99.7 4.3E-17 1.5E-21 128.0 10.2 78 163-246 29-108 (119)
128 2krb_A Eukaryotic translation 99.7 8.9E-18 3E-22 121.6 5.7 72 166-239 2-80 (81)
129 1iqt_A AUF1, heterogeneous nuc 99.7 5.7E-18 1.9E-22 120.4 4.5 75 167-242 1-75 (75)
130 2e44_A Insulin-like growth fac 99.7 6.7E-17 2.3E-21 120.2 10.4 80 163-246 13-93 (96)
131 2xs2_A Deleted in azoospermia- 99.7 1.8E-17 6.3E-22 124.7 7.3 80 163-245 7-86 (102)
132 1x5p_A Negative elongation fac 99.7 1.3E-16 4.4E-21 119.3 11.9 77 162-246 12-88 (97)
133 2dnp_A RNA-binding protein 14; 99.7 8.4E-17 2.9E-21 118.6 10.6 77 162-246 6-82 (90)
134 2qfj_A FBP-interacting repress 99.7 8.6E-17 2.9E-21 134.8 11.9 84 163-246 123-206 (216)
135 2dnn_A RNA-binding protein 12; 99.7 3.8E-17 1.3E-21 126.2 8.9 79 163-244 14-92 (109)
136 3lqv_A PRE-mRNA branch site pr 99.7 4.5E-17 1.6E-21 125.1 9.3 80 163-245 6-85 (115)
137 2cqh_A IGF-II mRNA-binding pro 99.7 3.8E-17 1.3E-21 121.0 8.5 77 163-246 6-84 (93)
138 3egn_A RNA-binding protein 40; 99.7 1.5E-17 5.1E-22 132.9 6.6 84 163-246 43-131 (143)
139 3beg_B Splicing factor, argini 99.7 3.5E-17 1.2E-21 126.7 8.4 75 164-245 15-94 (115)
140 2i2y_A Fusion protein consists 99.7 7.6E-17 2.6E-21 129.7 10.7 80 162-246 70-149 (150)
141 2yh0_A Splicing factor U2AF 65 99.7 1.1E-16 3.8E-21 132.4 11.6 85 163-247 112-196 (198)
142 2lmi_A GRSF-1, G-rich sequence 99.7 6.9E-18 2.4E-22 128.8 3.9 82 162-245 8-92 (107)
143 1whx_A Hypothetical protein ri 99.7 3.6E-17 1.2E-21 125.9 7.5 76 164-245 9-84 (111)
144 2kvi_A Nuclear polyadenylated 99.7 5.5E-17 1.9E-21 121.2 8.2 78 161-246 6-84 (96)
145 1wf1_A RNA-binding protein RAL 99.7 2.7E-16 9.2E-21 120.1 12.2 75 163-245 25-100 (110)
146 2cjk_A Nuclear polyadenylated 99.7 5.5E-17 1.9E-21 130.7 8.4 82 164-246 86-167 (167)
147 2e5g_A U6 snRNA-specific termi 99.7 1.8E-16 6.2E-21 117.8 9.9 78 163-246 6-83 (94)
148 2f3j_A RNA and export factor b 99.7 9.1E-17 3.1E-21 133.8 9.1 82 163-245 86-167 (177)
149 1l3k_A Heterogeneous nuclear r 99.7 2.9E-16 9.8E-21 129.7 11.6 83 162-245 10-92 (196)
150 2bz2_A Negative elongation fac 99.7 1.4E-16 4.9E-21 124.8 9.1 77 162-246 36-112 (121)
151 2g4b_A Splicing factor U2AF 65 99.7 3.1E-16 1E-20 126.9 11.2 81 163-243 92-172 (172)
152 1x4f_A Matrin 3; structural ge 99.7 8E-17 2.7E-21 125.2 7.2 78 163-246 23-103 (112)
153 3md3_A Nuclear and cytoplasmic 99.7 4.4E-16 1.5E-20 124.7 11.6 80 166-246 1-80 (166)
154 3pgw_S U1-70K; protein-RNA com 99.7 2.3E-16 7.8E-21 148.6 11.2 84 163-246 100-183 (437)
155 2dha_A FLJ20171 protein; RRM d 99.7 6E-17 2E-21 127.7 6.1 81 162-244 20-104 (123)
156 1l3k_A Heterogeneous nuclear r 99.7 4.3E-16 1.5E-20 128.6 11.4 83 163-246 102-184 (196)
157 1wg1_A KIAA1579 protein, homol 99.7 3.4E-16 1.2E-20 115.0 9.3 74 165-245 5-78 (88)
158 4f02_A Polyadenylate-binding p 99.7 4.4E-16 1.5E-20 132.0 11.3 80 164-245 102-181 (213)
159 3zzy_A Polypyrimidine tract-bi 99.7 7.5E-16 2.6E-20 122.7 11.1 77 164-245 27-106 (130)
160 3d2w_A TAR DNA-binding protein 99.6 4.6E-16 1.6E-20 115.2 9.2 76 162-246 8-85 (89)
161 2j8a_A Histone-lysine N-methyl 99.6 4E-16 1.4E-20 124.0 9.3 78 166-243 3-94 (136)
162 1sjr_A Polypyrimidine tract-bi 99.6 5.7E-16 2E-20 127.9 10.4 79 163-245 44-124 (164)
163 2hgn_A Heterogeneous nuclear r 99.6 5E-17 1.7E-21 130.8 3.3 81 163-246 44-124 (139)
164 3u1l_A PRE-mRNA-splicing facto 99.6 4.6E-16 1.6E-20 135.9 9.7 80 162-247 131-231 (240)
165 1b7f_A Protein (SXL-lethal pro 99.6 1.4E-15 4.7E-20 122.4 11.5 80 163-242 87-168 (168)
166 2qfj_A FBP-interacting repress 99.6 7.4E-16 2.5E-20 129.0 9.9 83 163-245 26-108 (216)
167 3nmr_A Cugbp ELAV-like family 99.6 1.1E-15 3.7E-20 123.6 10.5 82 164-245 2-88 (175)
168 2hgm_A HNRPF protein, heteroge 99.6 2.3E-16 8E-21 124.9 5.9 79 163-244 40-120 (126)
169 3tyt_A Heterogeneous nuclear r 99.6 1.4E-15 4.6E-20 129.3 10.6 76 164-244 3-79 (205)
170 1fje_B Nucleolin RBD12, protei 99.6 1.1E-15 3.9E-20 124.2 9.7 79 163-246 97-175 (175)
171 1fxl_A Paraneoplastic encephal 99.6 2.1E-15 7.1E-20 120.8 11.1 79 164-242 87-167 (167)
172 2cq2_A Hypothetical protein LO 99.6 8.4E-16 2.9E-20 119.8 8.3 77 163-245 23-106 (114)
173 2dnl_A Cytoplasmic polyadenyla 99.6 7.5E-16 2.6E-20 118.7 8.0 77 163-242 6-85 (114)
174 3nmr_A Cugbp ELAV-like family 99.6 2.7E-15 9.4E-20 121.2 10.7 80 163-243 93-175 (175)
175 3pgw_A U1-A; protein-RNA compl 99.6 3.3E-15 1.1E-19 130.8 11.6 83 161-246 5-91 (282)
176 2cjk_A Nuclear polyadenylated 99.6 1.2E-15 4.1E-20 122.9 8.1 80 164-245 2-81 (167)
177 2e5i_A Heterogeneous nuclear r 99.6 3.4E-15 1.2E-19 117.9 10.5 75 166-246 26-103 (124)
178 2ghp_A U4/U6 snRNA-associated 99.6 2.6E-15 9E-20 132.1 10.8 83 163-246 208-292 (292)
179 2pe8_A Splicing factor 45; RRM 99.6 5E-15 1.7E-19 113.4 10.9 82 163-244 6-93 (105)
180 1wf0_A TDP-43, TAR DNA-binding 99.6 7.7E-16 2.6E-20 112.9 6.1 76 164-246 4-79 (88)
181 2diu_A KIAA0430 protein; struc 99.6 3.4E-15 1.2E-19 112.4 8.4 73 164-246 8-85 (96)
182 2hzc_A Splicing factor U2AF 65 99.6 3.8E-15 1.3E-19 108.4 8.3 71 164-241 5-86 (87)
183 3smz_A Protein raver-1, ribonu 99.6 9.3E-15 3.2E-19 128.1 12.0 83 163-246 182-265 (284)
184 2voo_A Lupus LA protein; RNA-b 99.6 9E-15 3.1E-19 123.2 11.1 79 164-244 108-186 (193)
185 3smz_A Protein raver-1, ribonu 99.6 1.4E-14 4.8E-19 127.0 12.2 82 164-245 94-175 (284)
186 2dit_A HIV TAT specific factor 99.6 2.4E-14 8.1E-19 110.0 11.7 81 162-246 12-103 (112)
187 1fje_B Nucleolin RBD12, protei 99.6 1.5E-15 5E-20 123.6 4.7 83 161-245 9-91 (175)
188 3pgw_A U1-A; protein-RNA compl 99.6 6.6E-14 2.3E-18 122.5 14.7 77 163-244 205-282 (282)
189 2adc_A Polypyrimidine tract-bi 99.5 1.6E-14 5.6E-19 123.6 10.2 79 162-245 31-110 (229)
190 1qm9_A Polypyrimidine tract-bi 99.5 1.3E-14 4.4E-19 120.6 7.2 76 165-245 3-79 (198)
191 2ghp_A U4/U6 snRNA-associated 99.5 6.4E-14 2.2E-18 123.2 9.8 82 164-246 116-198 (292)
192 1jmt_A Splicing factor U2AF 35 99.5 2E-14 7E-19 109.7 5.2 72 170-242 20-103 (104)
193 1qm9_A Polypyrimidine tract-bi 99.5 5.6E-14 1.9E-18 116.7 8.1 78 163-245 118-197 (198)
194 3sde_A Paraspeckle component 1 99.5 1.8E-13 6E-18 119.5 11.4 77 163-245 20-96 (261)
195 2adc_A Polypyrimidine tract-bi 99.5 1.4E-13 4.6E-18 117.8 9.7 78 163-245 149-228 (229)
196 3sde_A Paraspeckle component 1 99.5 2.6E-13 8.9E-18 118.4 11.5 81 164-245 95-179 (261)
197 3v4m_A Splicing factor U2AF 65 99.5 1.3E-13 4.5E-18 105.4 8.3 81 164-244 4-96 (105)
198 3tyt_A Heterogeneous nuclear r 99.5 1.4E-13 4.8E-18 116.8 9.3 78 163-242 121-204 (205)
199 2g4b_A Splicing factor U2AF 65 99.4 3E-13 1E-17 109.2 9.2 75 164-245 3-88 (172)
200 2yh0_A Splicing factor U2AF 65 99.4 2.5E-13 8.6E-18 112.0 8.4 74 165-245 4-88 (198)
201 3ue2_A Poly(U)-binding-splicin 99.4 6.3E-13 2.2E-17 103.9 10.1 80 164-243 19-107 (118)
202 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.4E-12 4.7E-17 99.1 10.2 75 165-246 10-91 (100)
203 3tht_A Alkylated DNA repair pr 99.3 5.7E-12 1.9E-16 115.3 8.6 75 163-243 16-97 (345)
204 3s6e_A RNA-binding protein 39; 99.2 1.7E-11 5.8E-16 95.2 7.3 75 165-243 7-91 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.1 7.7E-10 2.6E-14 82.4 9.4 71 166-245 8-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.0 2.2E-09 7.5E-14 84.2 8.5 75 162-242 15-93 (121)
207 3dxb_A Thioredoxin N-terminall 98.9 2.3E-09 7.7E-14 91.0 8.7 66 178-243 142-211 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.8 1.1E-08 3.8E-13 76.6 8.1 71 165-244 15-94 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.4 1.2E-06 3.9E-11 67.3 9.2 73 162-240 18-95 (117)
210 1wey_A Calcipressin 1; structu 97.5 0.00031 1.1E-08 53.2 7.5 76 164-245 4-84 (104)
211 1whv_A Poly(A)-specific ribonu 97.4 0.00089 3E-08 50.2 8.5 54 166-228 17-70 (100)
212 1uw4_A UPF3X; nonsense mediate 97.1 0.0038 1.3E-07 46.1 9.2 78 166-243 2-86 (91)
213 1wwh_A Nucleoporin 35, nucleop 97.0 0.0033 1.1E-07 48.7 8.6 72 162-241 21-93 (119)
214 2dhx_A Poly (ADP-ribose) polym 96.9 0.0073 2.5E-07 45.6 9.5 72 165-245 8-84 (104)
215 3ctr_A Poly(A)-specific ribonu 96.9 0.0017 6E-08 48.7 5.8 53 167-228 8-60 (101)
216 2kn4_A Immunoglobulin G-bindin 95.6 0.014 4.8E-07 45.9 5.0 35 194-230 2-36 (158)
217 3p3d_A Nucleoporin 53; structu 95.6 0.016 5.4E-07 45.6 5.0 79 163-243 5-97 (132)
218 2i2y_A Fusion protein consists 95.4 0.011 3.7E-07 46.3 3.8 41 203-244 9-50 (150)
219 2l08_A Regulator of nonsense t 94.9 0.043 1.5E-06 40.9 5.3 80 164-243 8-94 (97)
220 3pq1_A Poly(A) RNA polymerase; 94.5 0.027 9.2E-07 53.1 4.3 59 161-225 49-107 (464)
221 1a6b_B Momulv, zinc finger pro 91.2 0.063 2.1E-06 33.5 1.0 21 77-97 10-31 (40)
222 3d45_A Poly(A)-specific ribonu 87.3 1.6 5.6E-05 41.2 8.0 55 166-229 441-495 (507)
223 1u6p_A GAG polyprotein; MLV, A 87.2 0.19 6.3E-06 33.6 1.0 21 77-97 23-44 (56)
224 1dsq_A Nucleic acid binding pr 68.1 1.4 4.7E-05 24.4 0.5 18 78-95 3-21 (26)
225 2g0c_A ATP-dependent RNA helic 66.1 12 0.00042 25.3 5.3 68 167-243 2-75 (76)
226 1nc8_A Nucleocapsid protein; H 65.9 1.6 5.5E-05 24.7 0.5 18 77-94 6-24 (29)
227 2ysa_A Retinoblastoma-binding 46.1 5.5 0.00019 26.2 0.5 19 77-95 7-26 (55)
228 2a51_A Nucleocapsid protein; s 44.7 6 0.0002 23.7 0.5 17 78-94 1-18 (39)
229 2hqh_E Restin; beta/BETA struc 44.4 5.9 0.0002 22.1 0.4 17 79-95 5-22 (26)
230 2bl6_A Nucleocapsid protein P1 36.7 11 0.00039 22.1 0.9 16 79-94 2-18 (37)
231 3nyb_B Protein AIR2; polya RNA 36.4 9.3 0.00032 27.2 0.5 18 77-94 5-23 (83)
232 2ihx_A Nucleocapsid (NC) prote 32.2 13 0.00044 24.5 0.6 20 77-96 30-50 (61)
233 2ec7_A GAG polyprotein (PR55GA 31.3 16 0.00053 23.0 0.9 18 78-95 28-46 (49)
234 1cl4_A Protein (GAG polyprotei 30.9 16 0.00056 23.8 1.0 20 77-96 30-50 (60)
235 3e2u_E CAP-Gly domain-containi 30.1 15 0.0005 22.9 0.6 21 77-97 20-41 (42)
236 1a1t_A Nucleocapsid protein; s 29.0 16 0.00055 23.3 0.7 18 77-94 12-30 (55)
237 2pzo_E CAP-Gly domain-containi 27.9 17 0.00057 22.5 0.6 19 77-95 20-39 (42)
238 4e8u_A Putative uncharacterize 23.3 2.2E+02 0.0075 22.8 6.6 56 167-225 14-81 (172)
239 2lli_A Protein AIR2; RNA surve 22.2 21 0.00073 26.6 0.4 18 77-94 105-123 (124)
240 2cqf_A RNA-binding protein LIN 21.5 25 0.00085 23.3 0.5 20 77-96 29-49 (63)
241 4eyt_A Telomerase associated p 21.5 2.4E+02 0.0081 20.5 8.0 59 163-229 10-68 (129)
242 1qtx_B Protein (RS20); calmodu 21.2 9.4 0.00032 21.1 -1.3 10 26-35 1-10 (26)
243 3ts2_A Protein LIN-28 homolog 20.7 27 0.00091 27.3 0.6 16 78-93 98-114 (148)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=2.9e-22 Score=151.86 Aligned_cols=83 Identities=24% Similarity=0.457 Sum_probs=80.1
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
.+.++|||+|||+++++++|+++|++||.|.++.+++|+.+|.++|||||+|.+.++|++|++.|||..++|+.|+|+||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 56689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q psy13227 243 KST 245 (247)
Q Consensus 243 kp~ 245 (247)
+|.
T Consensus 97 kPS 99 (99)
T 4fxv_A 97 RPS 99 (99)
T ss_dssp CBC
T ss_pred eCC
Confidence 984
No 2
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-20 Score=142.48 Aligned_cols=87 Identities=52% Similarity=0.975 Sum_probs=82.8
Q ss_pred cCCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEE
Q psy13227 160 RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSV 239 (247)
Q Consensus 160 ~~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V 239 (247)
++.++.++|||+|||.++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|+.|+..|||..++|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34577789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy13227 240 DWSKSTN 246 (247)
Q Consensus 240 ~~akp~~ 246 (247)
+|++++.
T Consensus 90 ~~a~~~~ 96 (103)
T 2cq0_A 90 EWAKPST 96 (103)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9999875
No 3
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=2.2e-20 Score=135.29 Aligned_cols=82 Identities=20% Similarity=0.428 Sum_probs=79.7
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCCC
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKST 245 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp~ 245 (247)
++|||+|||.++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|+.|+..|||..++|+.|+|+|++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999889999999999999999999999999999999999999999998
Q ss_pred CC
Q psy13227 246 NQ 247 (247)
Q Consensus 246 ~~ 247 (247)
.+
T Consensus 82 ~~ 83 (83)
T 3md1_A 82 EH 83 (83)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 4
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=136.78 Aligned_cols=84 Identities=23% Similarity=0.389 Sum_probs=77.5
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
.+.++|||+|||.++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|+.|+..|||..++|+.|+|+|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy13227 243 KSTN 246 (247)
Q Consensus 243 kp~~ 246 (247)
++++
T Consensus 84 ~~kp 87 (87)
T 3bs9_A 84 TRKP 87 (87)
T ss_dssp C---
T ss_pred CCCC
Confidence 9875
No 5
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=6.5e-21 Score=143.90 Aligned_cols=84 Identities=21% Similarity=0.411 Sum_probs=78.3
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhccCC--eeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCc----eeCC
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGP--TSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGY----GYDH 234 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~--I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~----~i~g 234 (247)
......||||+|||+++++++|+++|++||. +..|++++|+.||.++|||||+|.+.++|++|++.|||. .++|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4466789999999999999999999999995 678999999999999999999999999999999999996 5999
Q ss_pred eEEEEeecCC
Q psy13227 235 LILSVDWSKS 244 (247)
Q Consensus 235 ~~L~V~~akp 244 (247)
+.|.|+||+.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999986
No 6
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=6.6e-20 Score=141.33 Aligned_cols=85 Identities=26% Similarity=0.390 Sum_probs=81.0
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
..+.++|||+|||.++++++|+++|+.||.|..+.|+.++.++.++|||||+|.+.++|++|++.|||..|+|+.|+|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
++++.
T Consensus 102 a~~~~ 106 (115)
T 2cpz_A 102 KRSKN 106 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 99864
No 7
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.83 E-value=6.6e-20 Score=141.16 Aligned_cols=86 Identities=23% Similarity=0.417 Sum_probs=82.0
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
...+.++|||+|||+++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|+.|++.|||..++|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45677899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy13227 241 WSKSTN 246 (247)
Q Consensus 241 ~akp~~ 246 (247)
|+++++
T Consensus 91 ~a~~~~ 96 (115)
T 2dgo_A 91 WATRKP 96 (115)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 999764
No 8
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=3.5e-21 Score=143.53 Aligned_cols=83 Identities=19% Similarity=0.389 Sum_probs=77.4
Q ss_pred ccEEEEeecCCCCCHHHHHHHhhccC-CeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHh-cCceeCCeEEEEeec
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVKQFG-PTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL-NGYGYDHLILSVDWS 242 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~~fG-~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~L-nG~~i~g~~L~V~~a 242 (247)
+++|||+|||+++++++|+++|++|| .|.+|+|++|+.||.++|||||+|.+.++|++|++.| |+..++|+.|+|+||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 7999999999999999999999999999999999977 466799999999999
Q ss_pred CCCCC
Q psy13227 243 KSTNQ 247 (247)
Q Consensus 243 kp~~~ 247 (247)
+|++.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 98763
No 9
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=5e-20 Score=142.27 Aligned_cols=82 Identities=15% Similarity=0.202 Sum_probs=78.7
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecC
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ak 243 (247)
..++|||+|||+++++++|+++|++||.|.++.|++|+.||+++|||||+|.+.++|++|++.|||..++|+.|+|+++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CC
Q psy13227 244 ST 245 (247)
Q Consensus 244 p~ 245 (247)
..
T Consensus 85 ~~ 86 (110)
T 3s8s_A 85 KG 86 (110)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 10
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-19 Score=136.21 Aligned_cols=85 Identities=25% Similarity=0.451 Sum_probs=80.7
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
..+.++|||+|||.++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|+.|+..|||..++|+.|+|.|
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4566899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy13227 242 SKSTNQ 247 (247)
Q Consensus 242 akp~~~ 247 (247)
++|+++
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 998763
No 11
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6.5e-20 Score=135.99 Aligned_cols=82 Identities=22% Similarity=0.355 Sum_probs=78.6
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
....++|||+|||.++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.|||..++|+.|+|+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 45668999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cC
Q psy13227 242 SK 243 (247)
Q Consensus 242 ak 243 (247)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 12
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.3e-20 Score=140.86 Aligned_cols=86 Identities=24% Similarity=0.405 Sum_probs=81.6
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhccCCee--------EEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCcee
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTS--------KMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGY 232 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~--------~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i 232 (247)
...+.++|||+|||.++++++|+++|+.||.|. .|.|+.++.+|.++|||||+|.+.++|+.||..|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456778999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred CCeEEEEeecCCCC
Q psy13227 233 DHLILSVDWSKSTN 246 (247)
Q Consensus 233 ~g~~L~V~~akp~~ 246 (247)
+|+.|+|.|++++.
T Consensus 91 ~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 QGSKLKVSLARKKP 104 (113)
T ss_dssp TTEECEEECSSCCC
T ss_pred CCCEEEEEECCCCC
Confidence 99999999999875
No 13
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.2e-20 Score=139.20 Aligned_cols=86 Identities=21% Similarity=0.404 Sum_probs=81.8
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
..+.++|||+|||.++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|+.|+..|||..++|+.|.|+|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 35668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy13227 242 SKSTNQ 247 (247)
Q Consensus 242 akp~~~ 247 (247)
++++++
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 998764
No 14
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.9e-20 Score=138.70 Aligned_cols=86 Identities=21% Similarity=0.352 Sum_probs=81.8
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
.....++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|+..|||..++|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34667899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy13227 241 WSKSTN 246 (247)
Q Consensus 241 ~akp~~ 246 (247)
|++++.
T Consensus 91 ~a~~~~ 96 (105)
T 1x5u_A 91 KASAHN 96 (105)
T ss_dssp ETTTTS
T ss_pred ECCCCC
Confidence 999874
No 15
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=134.07 Aligned_cols=83 Identities=28% Similarity=0.462 Sum_probs=79.6
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
.+..++|||+|||.++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|+..|||..++|+.|+|+|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45668999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCC
Q psy13227 242 SKS 244 (247)
Q Consensus 242 akp 244 (247)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 985
No 16
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.82 E-value=1.6e-20 Score=139.00 Aligned_cols=81 Identities=25% Similarity=0.313 Sum_probs=73.1
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccC--CeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecC
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFG--PTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG--~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ak 243 (247)
.+|||+|||+++++++|+++|++|| .|.++.++.++.+|.++|||||+|.+.++|++|++.|||..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q psy13227 244 STN 246 (247)
Q Consensus 244 p~~ 246 (247)
|++
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 875
No 17
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=1.1e-19 Score=132.22 Aligned_cols=81 Identities=21% Similarity=0.327 Sum_probs=78.1
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
.+.++|||+|||+++++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|+.|++.|||..++|+.|+|+||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 55689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred C
Q psy13227 243 K 243 (247)
Q Consensus 243 k 243 (247)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 6
No 18
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=136.28 Aligned_cols=85 Identities=29% Similarity=0.393 Sum_probs=81.0
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
..+.++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|+.|+..|||..++|+.|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35668999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
++++.
T Consensus 85 a~~~~ 89 (99)
T 1whw_A 85 STIKK 89 (99)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 99874
No 19
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=135.10 Aligned_cols=84 Identities=23% Similarity=0.450 Sum_probs=80.3
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...++|||+|||.++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|+.|+..|||..++|+.|+|+|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 34579999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy13227 243 KSTN 246 (247)
Q Consensus 243 kp~~ 246 (247)
+++.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 9875
No 20
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=138.10 Aligned_cols=85 Identities=24% Similarity=0.357 Sum_probs=81.1
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhc------CceeCCe
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLN------GYGYDHL 235 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~Ln------G~~i~g~ 235 (247)
....++|||+|||+++++++|+++|+.||.|..|.|++++.++.++|||||+|.+.++|++|+..|| |..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 4566899999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEEeecCCCC
Q psy13227 236 ILSVDWSKSTN 246 (247)
Q Consensus 236 ~L~V~~akp~~ 246 (247)
.|.|.|++++.
T Consensus 92 ~l~v~~a~~~~ 102 (111)
T 1x4h_A 92 QLKVDLAVTRD 102 (111)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEECCCCc
Confidence 99999999875
No 21
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=137.55 Aligned_cols=86 Identities=23% Similarity=0.474 Sum_probs=81.4
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeec-CCCCceeeEEEEEecCHHHHHHHHHHh-cCceeCCeEEE
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRD-KTNGLCKGFAYIHFKNKADAAKAIQYL-NGYGYDHLILS 238 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d-~~tg~skGfaFV~F~s~e~A~~Ai~~L-nG~~i~g~~L~ 238 (247)
.....++|||+|||.++++++|+++|+.||.|..|.|+.+ +.++.++|||||+|.+.++|++|+..| ||..++|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456789999999999999999999999999999999999 789999999999999999999999999 99999999999
Q ss_pred EeecCCCC
Q psy13227 239 VDWSKSTN 246 (247)
Q Consensus 239 V~~akp~~ 246 (247)
|+|++++.
T Consensus 91 v~~a~~~~ 98 (107)
T 2cph_A 91 LEWADSEV 98 (107)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 99999875
No 22
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9e-20 Score=137.36 Aligned_cols=85 Identities=26% Similarity=0.479 Sum_probs=81.0
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
..+.++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|+.|++.|||..++|+.|+|+|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35668999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
++++.
T Consensus 89 a~~~~ 93 (102)
T 1x5s_A 89 AGKSS 93 (102)
T ss_dssp EECCC
T ss_pred CCCCC
Confidence 99864
No 23
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=8e-20 Score=138.04 Aligned_cols=86 Identities=23% Similarity=0.460 Sum_probs=81.5
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
...+.++|||+|||.++++++|+++|+.||.|..+.|+.++.++.++|||||+|.+.++|++|+..|||..++|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34667899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy13227 241 WSKSTN 246 (247)
Q Consensus 241 ~akp~~ 246 (247)
|+++..
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 999763
No 24
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=137.04 Aligned_cols=85 Identities=20% Similarity=0.310 Sum_probs=81.0
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
..+.++|||+|||.++++++|+++|+.||.|..+.|+.++.++.++|||||+|.+.++|+.|++.|||..++|+.|.|+|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 35668999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
++++.
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 99874
No 25
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=1.2e-19 Score=138.56 Aligned_cols=86 Identities=20% Similarity=0.409 Sum_probs=81.6
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
...+.++|||+|||.++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|+.|+..|||..++|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy13227 241 WSKSTN 246 (247)
Q Consensus 241 ~akp~~ 246 (247)
|+++++
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 998775
No 26
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=1.6e-19 Score=134.78 Aligned_cols=82 Identities=24% Similarity=0.530 Sum_probs=79.1
Q ss_pred ccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCC
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKS 244 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp 244 (247)
+++|||+|||.++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|+.|++.|||..++|+.|.|+|+++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 46899999999999999999999999999999999998999999999999999999999999999999999999999998
Q ss_pred CC
Q psy13227 245 TN 246 (247)
Q Consensus 245 ~~ 246 (247)
++
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 74
No 27
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.9e-20 Score=135.75 Aligned_cols=84 Identities=26% Similarity=0.377 Sum_probs=80.2
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEE-EEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKM-YLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i-~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
...++|||+|||.++++++|+++|+.||.|..+ .+++++.++.++|||||+|.+.++|+.|+..|||..++|+.|.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345799999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
++++.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 99875
No 28
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=134.86 Aligned_cols=84 Identities=17% Similarity=0.341 Sum_probs=80.0
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
....++|||+|||.++++++|+++|+.||.|..+.|+.++.++.++|||||+|.+.++|++|++ ||+..++|+.|.|.|
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3566899999999999999999999999999999999999899999999999999999999999 999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
++++.
T Consensus 86 a~~~~ 90 (99)
T 2dgs_A 86 AEPRD 90 (99)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 99874
No 29
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=3.8e-19 Score=137.48 Aligned_cols=83 Identities=25% Similarity=0.362 Sum_probs=78.6
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
...+.++|||+|||+++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|++|++.|||..++|+.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34667899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecC
Q psy13227 241 WSK 243 (247)
Q Consensus 241 ~ak 243 (247)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 985
No 30
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.4e-19 Score=135.42 Aligned_cols=84 Identities=20% Similarity=0.338 Sum_probs=79.6
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
...+.++|||+|||+++++++|+++|++||.|..+.|+.+ ++.++|||||+|.+.++|+.|+..|||..++|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3467789999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy13227 241 WSKSTN 246 (247)
Q Consensus 241 ~akp~~ 246 (247)
|++++.
T Consensus 89 ~a~~~~ 94 (103)
T 2d9p_A 89 LAQRKE 94 (103)
T ss_dssp ECSSCC
T ss_pred Eecccc
Confidence 999864
No 31
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=137.99 Aligned_cols=86 Identities=23% Similarity=0.419 Sum_probs=81.7
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
..+.++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|+.|++.|||..++|+.|+|+|
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy13227 242 SKSTNQ 247 (247)
Q Consensus 242 akp~~~ 247 (247)
++++..
T Consensus 103 a~~k~d 108 (108)
T 2jrs_A 103 VTERTD 108 (108)
T ss_dssp SCSSCC
T ss_pred cccCCC
Confidence 999863
No 32
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2e-19 Score=134.51 Aligned_cols=84 Identities=26% Similarity=0.418 Sum_probs=78.9
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCC---CCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEE
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKT---NGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSV 239 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~---tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V 239 (247)
.+.++|||+|||+++++++|+++|+.||.|..+.++.++. |+.++|||||+|.+.++|+.|+..|||..++|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4557999999999999999999999999999999999876 6699999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy13227 240 DWSKSTN 246 (247)
Q Consensus 240 ~~akp~~ 246 (247)
+|++++.
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9999764
No 33
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=4.6e-19 Score=134.00 Aligned_cols=83 Identities=24% Similarity=0.403 Sum_probs=78.6
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
....++|||+|||+++++++|+++|+.|| |..|.|++++.++.++|||||+|.+.++|+.|+ .|||..++|+.|+|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 35568999999999999999999999997 999999999999999999999999999999999 7999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
++++.
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 99875
No 34
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.80 E-value=3.3e-19 Score=138.05 Aligned_cols=80 Identities=26% Similarity=0.367 Sum_probs=75.4
Q ss_pred ccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCC
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKS 244 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp 244 (247)
.++|||+|||+++++++|+++|++||.|.++.|++++ +.++|||||+|.+.++|++||+.|||..++|+.|.|.|+++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999985 55899999999999999999999999999999999999987
Q ss_pred CC
Q psy13227 245 TN 246 (247)
Q Consensus 245 ~~ 246 (247)
+.
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 35
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=136.51 Aligned_cols=85 Identities=16% Similarity=0.293 Sum_probs=80.8
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
...+.++|||+|||+++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++||.. |+..|+|+.|.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 456778999999999999999999999999999999999998999999999999999999999998 9999999999999
Q ss_pred ecCCCC
Q psy13227 241 WSKSTN 246 (247)
Q Consensus 241 ~akp~~ 246 (247)
|++++.
T Consensus 91 ~a~~~~ 96 (105)
T 2dh8_A 91 PCTPRG 96 (105)
T ss_dssp CSCCSS
T ss_pred EccCCC
Confidence 999864
No 36
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=130.88 Aligned_cols=84 Identities=19% Similarity=0.380 Sum_probs=78.9
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCc-eeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGL-CKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~-skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
..++|||+|||.++++++|+++|++||.|..+.++.++.++. ++|||||+|.+.++|++|+..|||..++|+.|+|+|+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 357999999999999999999999999999999999987766 9999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy13227 243 KSTNQ 247 (247)
Q Consensus 243 kp~~~ 247 (247)
.|+.+
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98753
No 37
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=134.99 Aligned_cols=85 Identities=16% Similarity=0.358 Sum_probs=80.7
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCee-EEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeE----
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTS-KMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLI---- 236 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~-~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~---- 236 (247)
....++|||+|||+++++++|+++|++||.|. .+.+++++.++.++|||||+|.+.++|+.|+..|||..++|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 35568999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q psy13227 237 LSVDWSKSTN 246 (247)
Q Consensus 237 L~V~~akp~~ 246 (247)
|+|+|+++..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999999864
No 38
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=5.9e-19 Score=133.52 Aligned_cols=84 Identities=24% Similarity=0.372 Sum_probs=79.4
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCC---eEEE
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDH---LILS 238 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g---~~L~ 238 (247)
....++|||+|||.++++++|+++|+.||.|..+.|+.++ +|.++|||||+|.+.++|++|+..|||..+.+ +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3567899999999999999999999999999999999997 89999999999999999999999999999998 9999
Q ss_pred EeecCCCC
Q psy13227 239 VDWSKSTN 246 (247)
Q Consensus 239 V~~akp~~ 246 (247)
|.|++++.
T Consensus 91 V~~a~~~~ 98 (105)
T 2dnh_A 91 VKFADTDK 98 (105)
T ss_dssp EEESCSSC
T ss_pred EEECccCc
Confidence 99999764
No 39
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=2.1e-19 Score=136.28 Aligned_cols=85 Identities=24% Similarity=0.366 Sum_probs=80.7
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCcee---CCeEEE
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGY---DHLILS 238 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i---~g~~L~ 238 (247)
..+.++|||+|||.++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|+.|+..|||..+ +|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45678999999999999999999999999999999999998999999999999999999999999999998 899999
Q ss_pred EeecCCCC
Q psy13227 239 VDWSKSTN 246 (247)
Q Consensus 239 V~~akp~~ 246 (247)
|.|++++.
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99998764
No 40
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.4e-19 Score=134.96 Aligned_cols=82 Identities=21% Similarity=0.353 Sum_probs=78.2
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCC-CceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTN-GLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~t-g~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
...++|||+|||+++++++|+++|+.|| |..|.|+.++.+ |.++|||||+|.+.++|++|| .|||..++|+.|.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 999999999887 999999999999999999999 8999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
++++.
T Consensus 91 a~~~~ 95 (104)
T 1wi8_A 91 ADQAQ 95 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 99875
No 41
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=2.1e-19 Score=131.76 Aligned_cols=82 Identities=23% Similarity=0.371 Sum_probs=78.4
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecC
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ak 243 (247)
+.++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|++|+ .|||..++|+.|+|.|++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3579999999999999999999999999999999999889999999999999999999999 899999999999999999
Q ss_pred CCC
Q psy13227 244 STN 246 (247)
Q Consensus 244 p~~ 246 (247)
++.
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 864
No 42
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.80 E-value=4.2e-19 Score=131.83 Aligned_cols=82 Identities=27% Similarity=0.406 Sum_probs=77.8
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
....++|||+|||+++++++|+++|++||.|..+.++.++ +|.++|||||+|.+.++|++|+..|||..++|+.|+|+|
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 4566899999999999999999999999999999999997 499999999999999999999999999999999999999
Q ss_pred cCC
Q psy13227 242 SKS 244 (247)
Q Consensus 242 akp 244 (247)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 874
No 43
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=4e-20 Score=139.81 Aligned_cols=82 Identities=23% Similarity=0.289 Sum_probs=78.5
Q ss_pred CccEEEEeecCC------CCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCC-eE
Q psy13227 164 DTTAIRISNLSV------NTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDH-LI 236 (247)
Q Consensus 164 ~~~tl~V~nLp~------~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g-~~ 236 (247)
..++|||+|||. ++++++|+++|++||.|.++.|++++.||+++|||||+|.+.++|++|++.|||..++| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 357999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEeecCCC
Q psy13227 237 LSVDWSKST 245 (247)
Q Consensus 237 L~V~~akp~ 245 (247)
|+|.|+.|+
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999764
No 44
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=5e-19 Score=132.85 Aligned_cols=82 Identities=24% Similarity=0.408 Sum_probs=78.3
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeE--------EEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeC
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSK--------MYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYD 233 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~--------i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~ 233 (247)
....++|||+|||.++++++|+++|++||.|.. +.++.++.+|.++|||||+|.+.++|++|++.|||..++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 355689999999999999999999999999999 999999989999999999999999999999999999999
Q ss_pred CeEEEEeecC
Q psy13227 234 HLILSVDWSK 243 (247)
Q Consensus 234 g~~L~V~~ak 243 (247)
|+.|+|+||+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999985
No 45
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.6e-19 Score=136.29 Aligned_cols=86 Identities=19% Similarity=0.252 Sum_probs=79.1
Q ss_pred CCCCccEEEEeecCCCCCHHHHH---HHhhccCCeeEEEEeecCCCC---ceeeEEEEEecCHHHHHHHHHHhcCceeCC
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLE---DLVKQFGPTSKMYLSRDKTNG---LCKGFAYIHFKNKADAAKAIQYLNGYGYDH 234 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~---~lF~~fG~I~~i~l~~d~~tg---~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g 234 (247)
+..+.++|||+|||+++++++|+ ++|++||.|..+.|+.++.++ .++|||||+|.+.++|++||+.|||..++|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34566799999999999999999 999999999999999987654 566999999999999999999999999999
Q ss_pred eEEEEeecCCCC
Q psy13227 235 LILSVDWSKSTN 246 (247)
Q Consensus 235 ~~L~V~~akp~~ 246 (247)
+.|+|+|+++++
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999999875
No 46
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1e-18 Score=131.97 Aligned_cols=83 Identities=23% Similarity=0.377 Sum_probs=77.6
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
..+.++|||+|||+++++++|+++|+.||.|..|.|+.++. .++|||||+|.+.++|++|+..|||..++|+.|.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45668999999999999999999999999999999999863 3899999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
++++.
T Consensus 90 a~~~~ 94 (103)
T 2cq3_A 90 ATARV 94 (103)
T ss_dssp CCSSC
T ss_pred cccCC
Confidence 99875
No 47
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.5e-19 Score=136.32 Aligned_cols=84 Identities=19% Similarity=0.321 Sum_probs=79.3
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
.....++|||+|||+++++++|+++|+.||.|..|.|++++.++.++|||||+|.+.++|++||..||+ .++|+.|.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 346678999999999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred ecCCC
Q psy13227 241 WSKST 245 (247)
Q Consensus 241 ~akp~ 245 (247)
|+++.
T Consensus 92 ~a~~~ 96 (116)
T 2cqd_A 92 LAYLG 96 (116)
T ss_dssp ESTTT
T ss_pred EcccC
Confidence 99764
No 48
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=131.74 Aligned_cols=84 Identities=21% Similarity=0.378 Sum_probs=77.8
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
.....++|||+|||+++++++|+++|++||.|..|.|+.++. .++|||||+|.+.++|++|+..|||..++|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 346678999999999999999999999999999999999863 368999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy13227 241 WSKSTN 246 (247)
Q Consensus 241 ~akp~~ 246 (247)
|++++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 999864
No 49
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.79 E-value=8.1e-19 Score=133.19 Aligned_cols=82 Identities=30% Similarity=0.462 Sum_probs=78.3
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
....++|||+|||+.+++++|+++|++||.|..+.|+.++ +|.++|||||+|.+.++|++|+..|||..++|+.|.|+|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred cCC
Q psy13227 242 SKS 244 (247)
Q Consensus 242 akp 244 (247)
+..
T Consensus 105 a~s 107 (107)
T 3ulh_A 105 VTS 107 (107)
T ss_dssp ECC
T ss_pred eCC
Confidence 863
No 50
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=133.28 Aligned_cols=83 Identities=18% Similarity=0.283 Sum_probs=78.3
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
....++|||+|||+++++++|+++|..||.|..+.|+.++ ++.++|||||+|.+.++|+.|+..|||..++|+.|.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3556899999999999999999999999999999999997 799999999999999999999999999999999999999
Q ss_pred cCCC
Q psy13227 242 SKST 245 (247)
Q Consensus 242 akp~ 245 (247)
+++.
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 9754
No 51
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.8e-19 Score=132.42 Aligned_cols=84 Identities=15% Similarity=0.223 Sum_probs=79.3
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
+..++|||+|||+++++++|+++|..||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..++|+.|+|+|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 45579999999999999999999999999998888888889999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy13227 243 KSTN 246 (247)
Q Consensus 243 kp~~ 246 (247)
++++
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8764
No 52
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.5e-19 Score=131.95 Aligned_cols=82 Identities=18% Similarity=0.268 Sum_probs=76.9
Q ss_pred CCccEEEEeecCCCCCHHHHH----HHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEE
Q psy13227 163 DDTTAIRISNLSVNTSENDLE----DLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILS 238 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~----~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~ 238 (247)
.+.++|||+|||+++++++|+ ++|++||.|.++.|+.++.+ +|||||+|.+.++|++|++.|||..++|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456899999999999999999 99999999999999999755 89999999999999999999999999999999
Q ss_pred EeecCCCCC
Q psy13227 239 VDWSKSTNQ 247 (247)
Q Consensus 239 V~~akp~~~ 247 (247)
|+|++++++
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999998753
No 53
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.79 E-value=4e-19 Score=145.41 Aligned_cols=83 Identities=17% Similarity=0.313 Sum_probs=77.9
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccC--CeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFG--PTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG--~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
.+.++|||+|||+++++++|+++|+.|| .|..|.|+.|+.+|.++|||||+|.+.++|++||..|||..|+|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 4558999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q psy13227 241 WSKST 245 (247)
Q Consensus 241 ~akp~ 245 (247)
+++++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99864
No 54
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.79 E-value=5.2e-19 Score=137.38 Aligned_cols=84 Identities=30% Similarity=0.484 Sum_probs=79.9
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
.++.++|||+|||.++++++|+++|+.||.|..|.++.++ +|.++|||||+|.+.++|+.|+..|||..++|+.|.|+|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4566899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
++++.
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 98764
No 55
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=3.7e-19 Score=140.99 Aligned_cols=86 Identities=28% Similarity=0.488 Sum_probs=81.6
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
.+..++|||+|||.++++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|++||..|||..|+|+.|.|+|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy13227 242 SKSTNQ 247 (247)
Q Consensus 242 akp~~~ 247 (247)
++++.+
T Consensus 123 a~~~~p 128 (129)
T 2kxn_B 123 SITKRP 128 (129)
T ss_dssp CSSSSC
T ss_pred ecCCCC
Confidence 998753
No 56
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.78 E-value=2e-19 Score=144.30 Aligned_cols=82 Identities=13% Similarity=0.219 Sum_probs=77.3
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhccCC---eeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEE
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGP---TSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLIL 237 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~---I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L 237 (247)
...+.++|||+|||+++++++|+++|+.||. |..|.|++++. |+++|||||+|.+.++|++||+ |||..++|+.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 4566789999999999999999999999999 89999999986 9999999999999999999999 99999999999
Q ss_pred EEeecCC
Q psy13227 238 SVDWSKS 244 (247)
Q Consensus 238 ~V~~akp 244 (247)
.|.++.+
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9999875
No 57
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=4.7e-19 Score=133.85 Aligned_cols=84 Identities=11% Similarity=0.256 Sum_probs=79.6
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhc-cCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCce-eCCeEEEE
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQ-FGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYG-YDHLILSV 239 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~-fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~-i~g~~L~V 239 (247)
....++|||+|||+++++++|+++|+. ||.|..+.|+.++ +|.++|||||+|.+.++|..|+..|||.. ++|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 355689999999999999999999999 9999999999998 99999999999999999999999999999 99999999
Q ss_pred eecCCCC
Q psy13227 240 DWSKSTN 246 (247)
Q Consensus 240 ~~akp~~ 246 (247)
.|++++.
T Consensus 85 ~~a~~~~ 91 (104)
T 2dhg_A 85 SVAIPKA 91 (104)
T ss_dssp CBCCCCC
T ss_pred EEccCCC
Confidence 9998764
No 58
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.6e-18 Score=129.67 Aligned_cols=84 Identities=20% Similarity=0.332 Sum_probs=78.6
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
...+.++|||+|||+++++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|+.|+. +++.++|+.|.|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 34566899999999999999999999999999999999999899999999999999999999999 6889999999999
Q ss_pred ecCCCC
Q psy13227 241 WSKSTN 246 (247)
Q Consensus 241 ~akp~~ 246 (247)
|++++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cqg_A 89 LPNSKQ 94 (103)
T ss_dssp CCCTTC
T ss_pred ecCCCC
Confidence 999864
No 59
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.78 E-value=4.6e-19 Score=138.52 Aligned_cols=85 Identities=21% Similarity=0.410 Sum_probs=80.7
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
..+.++|||+|||+++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|+.|+..|||..|+|+.|.|+|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 35568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
+++++
T Consensus 99 a~~~~ 103 (126)
T 3ex7_B 99 CFVRG 103 (126)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98764
No 60
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.8e-19 Score=134.20 Aligned_cols=84 Identities=24% Similarity=0.465 Sum_probs=80.1
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
.+.++|||+|||.++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|+.|++.|||..++|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34578999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy13227 243 KSTN 246 (247)
Q Consensus 243 kp~~ 246 (247)
+++.
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 9864
No 61
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=138.51 Aligned_cols=85 Identities=21% Similarity=0.416 Sum_probs=81.2
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
....++|||+|||.++++++|+++|+.||.|..|.|++++.+|.++|||||+|.+.++|.+|+..|||..++|+.|+|+|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
++++.
T Consensus 119 a~~~~ 123 (139)
T 1u6f_A 119 AASGH 123 (139)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 99764
No 62
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.78 E-value=1.1e-18 Score=128.87 Aligned_cols=82 Identities=20% Similarity=0.282 Sum_probs=77.6
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...++|||+|||.++++++|+++|++||.|..+.+.++ +|.++|||||+|.+.++|+.|+..|||..++|+.|+|+|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 55689999999999999999999999999999999884 7999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy13227 243 KSTN 246 (247)
Q Consensus 243 kp~~ 246 (247)
+++.
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 9864
No 63
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2e-18 Score=132.57 Aligned_cols=85 Identities=25% Similarity=0.419 Sum_probs=79.5
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCcee--------
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGY-------- 232 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i-------- 232 (247)
...+.++|||+|||.++++++|+++|+.||.|..+.|+.++ ++.++|||||+|.+.++|+.|+..|||..+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567899999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred CCeEEEEeecCCCC
Q psy13227 233 DHLILSVDWSKSTN 246 (247)
Q Consensus 233 ~g~~L~V~~akp~~ 246 (247)
.++.|.|.|+.|+.
T Consensus 100 ~~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 100 PTEPLLCKFSGPSS 113 (114)
T ss_dssp CSSCBEEEECCCSC
T ss_pred CCCceeEEccCCCC
Confidence 57789999999864
No 64
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.5e-18 Score=130.34 Aligned_cols=82 Identities=26% Similarity=0.475 Sum_probs=75.7
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
..+.++|||+|||+++++++|+++|++||.|..+.|..+ +.++|||||+|.+.++|+.|++.||+..++|+.|.|+|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 356689999999999999999999999999999999654 56899999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
++++.
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 99864
No 65
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1.7e-18 Score=126.66 Aligned_cols=80 Identities=25% Similarity=0.439 Sum_probs=75.8
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
..+.++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++ +++..++|+.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 4566899999999999999999999999999999999999899999999999999999999997 689999999999998
Q ss_pred c
Q psy13227 242 S 242 (247)
Q Consensus 242 a 242 (247)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 66
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.78 E-value=5e-18 Score=132.53 Aligned_cols=84 Identities=27% Similarity=0.432 Sum_probs=79.7
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
....++|||+|||.++++++|+++|+.||.|..+.+..++ +|.++|||||+|.+.++|+.|+..|||..++|+.|+|+|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3566899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
|.+..
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 98753
No 67
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.78 E-value=2.3e-18 Score=139.54 Aligned_cols=84 Identities=27% Similarity=0.546 Sum_probs=80.6
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
.+.++|||+|||.++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|+|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 56689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy13227 243 KSTN 246 (247)
Q Consensus 243 kp~~ 246 (247)
++..
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8754
No 68
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.8e-18 Score=126.69 Aligned_cols=83 Identities=14% Similarity=0.301 Sum_probs=78.3
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
..+.++|||+|||+++++++|+++|+.| .|..+.|+++ .+|.++|||||+|.+.++|+.|+. |||..++|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3556899999999999999999999999 9999999999 699999999999999999999999 999999999999999
Q ss_pred cCCCCC
Q psy13227 242 SKSTNQ 247 (247)
Q Consensus 242 akp~~~ 247 (247)
++++++
T Consensus 84 a~~~~~ 89 (91)
T 2dgw_A 84 EKSGPS 89 (91)
T ss_dssp ESSCCC
T ss_pred CCcCCC
Confidence 998763
No 69
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.7e-19 Score=133.75 Aligned_cols=85 Identities=13% Similarity=0.217 Sum_probs=79.2
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCC-eeEEEEe-ecCCCCceeeEEEEEecCHHHHHHHHHHhc--CceeCCeEE
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGP-TSKMYLS-RDKTNGLCKGFAYIHFKNKADAAKAIQYLN--GYGYDHLIL 237 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~-I~~i~l~-~d~~tg~skGfaFV~F~s~e~A~~Ai~~Ln--G~~i~g~~L 237 (247)
..+.++|||+|||+++++++|+++|..||. |..+.++ .++.+|.++|||||+|.+.++|+.|+..|| +..++|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 355689999999999999999999999998 9999998 888899999999999999999999999996 589999999
Q ss_pred EEeecCCCC
Q psy13227 238 SVDWSKSTN 246 (247)
Q Consensus 238 ~V~~akp~~ 246 (247)
.|+|++|+.
T Consensus 85 ~V~~a~~~~ 93 (109)
T 2dis_A 85 AVDWAEPEI 93 (109)
T ss_dssp EEEESCSSC
T ss_pred EEEEcCCCC
Confidence 999999874
No 70
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=3.7e-19 Score=140.70 Aligned_cols=83 Identities=22% Similarity=0.413 Sum_probs=78.5
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeE--EEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCc----eeCCeE
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSK--MYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGY----GYDHLI 236 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~--i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~----~i~g~~ 236 (247)
...++|||+|||+++++++|+++|++||.|.. |+|++|+.+|+++|||||+|.+. +|.+|+..|||. .++|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45579999999999999999999999999977 99999999999999999999999 999999999999 999999
Q ss_pred EEEeecCCCC
Q psy13227 237 LSVDWSKSTN 246 (247)
Q Consensus 237 L~V~~akp~~ 246 (247)
|.|+|++++.
T Consensus 100 l~V~~a~~~~ 109 (131)
T 2m2b_A 100 INVEFAKGSK 109 (131)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999999863
No 71
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=2.2e-18 Score=134.28 Aligned_cols=83 Identities=20% Similarity=0.342 Sum_probs=78.9
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
.+.++|||+|||.++++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|+.|+ .|||..++|+.|+|+|+
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 45679999999999999999999999999999999999889999999999999999999999 79999999999999999
Q ss_pred CCCC
Q psy13227 243 KSTN 246 (247)
Q Consensus 243 kp~~ 246 (247)
++..
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8764
No 72
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=4.5e-19 Score=133.79 Aligned_cols=83 Identities=19% Similarity=0.329 Sum_probs=76.9
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecC-CCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDK-TNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~-~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
...++|||+|||.++++++|+++|+.|| |..+.++.++ .+|.++|||||+|.+.++|.+|+ .|||..++|+.|+|+|
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 5568999999999999999999999999 9999999998 69999999999999999999999 8999999999999999
Q ss_pred cCCCCC
Q psy13227 242 SKSTNQ 247 (247)
Q Consensus 242 akp~~~ 247 (247)
+++++.
T Consensus 95 a~~~~~ 100 (100)
T 2j76_E 95 ADQAQD 100 (100)
T ss_dssp CCCSCC
T ss_pred ccCCCC
Confidence 999863
No 73
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.77 E-value=8.6e-19 Score=130.14 Aligned_cols=82 Identities=17% Similarity=0.236 Sum_probs=76.3
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...++|||+|||+++++++|+++|.+||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..++|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 44589999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred CC
Q psy13227 243 KS 244 (247)
Q Consensus 243 kp 244 (247)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 74
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.4e-19 Score=135.53 Aligned_cols=82 Identities=23% Similarity=0.314 Sum_probs=78.2
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
.+.++|||+|||.++++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|++|| .|||..|+|+.|.|.|+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 45679999999999999999999999999999999999989999999999999999999999 89999999999999998
Q ss_pred CCC
Q psy13227 243 KST 245 (247)
Q Consensus 243 kp~ 245 (247)
+++
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 764
No 75
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=2.7e-18 Score=140.76 Aligned_cols=85 Identities=19% Similarity=0.395 Sum_probs=80.3
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
....++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|+.||..|||..|+|+.|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
+++++
T Consensus 149 a~~~~ 153 (165)
T 1rk8_A 149 CFVKG 153 (165)
T ss_dssp SEECC
T ss_pred ecCCC
Confidence 98764
No 76
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.5e-19 Score=129.81 Aligned_cols=82 Identities=24% Similarity=0.417 Sum_probs=77.8
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|+.|+..|||..++|+.|++.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 34579999999999999999999999999999999999989999999999999999999999999999999999999987
Q ss_pred CC
Q psy13227 243 KS 244 (247)
Q Consensus 243 kp 244 (247)
++
T Consensus 83 ~s 84 (85)
T 1x4e_A 83 SS 84 (85)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 77
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=133.63 Aligned_cols=83 Identities=19% Similarity=0.345 Sum_probs=79.2
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
.+.++|||+|||+++++++|+++|..||.|..|.|+.++.++.++|||||+|.+.++|+.||.. |+..|+|+.|.|.|+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 4568999999999999999999999999999999999998999999999999999999999997 999999999999999
Q ss_pred CCCC
Q psy13227 243 KSTN 246 (247)
Q Consensus 243 kp~~ 246 (247)
+++.
T Consensus 104 ~~~~ 107 (116)
T 1x4b_A 104 VARE 107 (116)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 9874
No 78
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.77 E-value=2.6e-19 Score=131.83 Aligned_cols=80 Identities=20% Similarity=0.365 Sum_probs=74.5
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCCC
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKST 245 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp~ 245 (247)
++|||+|||.++++++|+++|++||.|.++.+++++.+|.++|||||+|.+.+ |..|+..|||..++|+.|+|+||.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999989999999999999999 99999999999999999999999876
Q ss_pred C
Q psy13227 246 N 246 (247)
Q Consensus 246 ~ 246 (247)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 79
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=132.54 Aligned_cols=84 Identities=23% Similarity=0.374 Sum_probs=78.2
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
...+.++|||+|||.++++++|+++|++||.|..+.++.++ +.++|||||+|.+.++|++|+..|||..++|+.|+|+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34667899999999999999999999999999999999985 4589999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy13227 241 WSKSTN 246 (247)
Q Consensus 241 ~akp~~ 246 (247)
|++++.
T Consensus 103 ~a~~~~ 108 (109)
T 2err_A 103 NATARV 108 (109)
T ss_dssp ECCCSC
T ss_pred ECCCCc
Confidence 999874
No 80
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.2e-18 Score=127.33 Aligned_cols=80 Identities=26% Similarity=0.385 Sum_probs=74.1
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeC--CeEEEE
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYD--HLILSV 239 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~--g~~L~V 239 (247)
.+..++|||+|||+++++++|+++|++||.|..+.+..+ +|||||+|.+.++|+.|++.|||..++ |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 355689999999999999999999999999999998754 689999999999999999999999999 999999
Q ss_pred eecCCCCC
Q psy13227 240 DWSKSTNQ 247 (247)
Q Consensus 240 ~~akp~~~ 247 (247)
+|++++++
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99999864
No 81
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.76 E-value=3.9e-18 Score=134.88 Aligned_cols=81 Identities=20% Similarity=0.312 Sum_probs=76.9
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
....++|||+|||.++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|++|++.|||..++|+.|+|+|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 35568999999999999999999999999999999999998999999999999999999999999999999999999998
Q ss_pred c
Q psy13227 242 S 242 (247)
Q Consensus 242 a 242 (247)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 82
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.5e-18 Score=127.48 Aligned_cols=83 Identities=23% Similarity=0.432 Sum_probs=76.6
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
.....++|||+|||+++++++|+++|+.|+ .+.++.++.++.++|||||+|.+.++|+.||..|||..|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345668999999999999999999999774 68888898899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy13227 241 WSKSTN 246 (247)
Q Consensus 241 ~akp~~ 246 (247)
|++++.
T Consensus 88 ~a~~~~ 93 (102)
T 2fc8_A 88 WAKPKG 93 (102)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 999875
No 83
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=2e-18 Score=132.51 Aligned_cols=83 Identities=19% Similarity=0.305 Sum_probs=76.6
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
.+.++|||+|||.++++++|+++|+.||.|..|.+++++.+|.++|||||+|.+.++|++|+..+ +..++|+.|.|.|+
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 55679999999999999999999999999999999999989999999999999999999999975 59999999999999
Q ss_pred CCCC
Q psy13227 243 KSTN 246 (247)
Q Consensus 243 kp~~ 246 (247)
.++.
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9875
No 84
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.76 E-value=1.8e-18 Score=139.99 Aligned_cols=84 Identities=26% Similarity=0.531 Sum_probs=80.1
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...++|||+|||+++++++|+++|+.||.|..+.|+.++.+|.++|||||+|.+.++|+.|+..|||..++|+.|+|.|+
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 44579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy13227 243 KSTN 246 (247)
Q Consensus 243 kp~~ 246 (247)
+++.
T Consensus 148 ~~~~ 151 (158)
T 2kn4_A 148 RYGR 151 (158)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 9763
No 85
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-18 Score=132.25 Aligned_cols=80 Identities=15% Similarity=0.291 Sum_probs=75.7
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
..+.++|||+|||+++++++|+++|++||.|.+|.|++++. |.++|||||+|.+.++|+.|+. +||..++|+.|.|.|
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 45568999999999999999999999999999999999986 9999999999999999999999 999999999999998
Q ss_pred cC
Q psy13227 242 SK 243 (247)
Q Consensus 242 ak 243 (247)
+.
T Consensus 86 ~~ 87 (103)
T 1s79_A 86 KD 87 (103)
T ss_dssp HH
T ss_pred ch
Confidence 75
No 86
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.8e-18 Score=127.77 Aligned_cols=81 Identities=21% Similarity=0.375 Sum_probs=74.7
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
..+.++|||+|||+++++++|+++|++||.| .++.+ .++.++|||||+|.+.++|++|+..|||..++|+.|+|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4567899999999999999999999999976 56677 5899999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
++++.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98864
No 87
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=9.8e-19 Score=124.51 Aligned_cols=75 Identities=24% Similarity=0.388 Sum_probs=72.6
Q ss_pred EEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 167 AIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 167 tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
+|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++ |||..++|+.|.|+||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999998899999999999999999999998 9999999999999986
No 88
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=9.7e-19 Score=139.48 Aligned_cols=85 Identities=26% Similarity=0.516 Sum_probs=80.6
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
..+.++|||+|||+++++++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|++|+..|||..++|+.|+|+|
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34567999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
++++.
T Consensus 124 a~~~~ 128 (135)
T 2lea_A 124 ARYGR 128 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 99764
No 89
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1e-17 Score=127.95 Aligned_cols=77 Identities=21% Similarity=0.296 Sum_probs=72.6
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCC-----eEE
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDH-----LIL 237 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g-----~~L 237 (247)
...++|||+|||+++++++|+++|++||.|..+.|+.+ |||||+|.+.++|+.||+.|||..++| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 44579999999999999999999999999999999876 799999999999999999999999999 999
Q ss_pred EEeecCCCC
Q psy13227 238 SVDWSKSTN 246 (247)
Q Consensus 238 ~V~~akp~~ 246 (247)
.|++++++.
T Consensus 86 ~V~~a~~~~ 94 (108)
T 1x4c_A 86 RVKVDGPRS 94 (108)
T ss_dssp EEEESSCCS
T ss_pred EEEeCCCCC
Confidence 999999875
No 90
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.8e-18 Score=131.26 Aligned_cols=78 Identities=17% Similarity=0.323 Sum_probs=72.0
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcC--ceeCCeEEEEe
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG--YGYDHLILSVD 240 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG--~~i~g~~L~V~ 240 (247)
...++|||+|||+++++++|+++|++||.|.++.|+++ +|||||+|.+.++|+.|++.|++ ..++|+.|+|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45689999999999999999999999999999999875 68999999999999999998874 68999999999
Q ss_pred ecCCCC
Q psy13227 241 WSKSTN 246 (247)
Q Consensus 241 ~akp~~ 246 (247)
||+++.
T Consensus 88 ~A~~~~ 93 (105)
T 1sjq_A 88 FSNHKE 93 (105)
T ss_dssp CCSSSS
T ss_pred EcCCCC
Confidence 999864
No 91
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.8e-18 Score=132.44 Aligned_cols=81 Identities=19% Similarity=0.208 Sum_probs=76.4
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCe-eEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPT-SKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I-~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
.+.++|||+|||+++++++|+++|+.||.| ..|.|+.++ +|.++|||||+|.+.++|++||.. ||..|+|+.|.|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 456799999999999999999999999999 899999998 999999999999999999999996 99999999999999
Q ss_pred cCCC
Q psy13227 242 SKST 245 (247)
Q Consensus 242 akp~ 245 (247)
+.++
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 9754
No 92
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-18 Score=124.12 Aligned_cols=77 Identities=21% Similarity=0.332 Sum_probs=73.9
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecC
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ak 243 (247)
++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|+..+| ..++|+.|.|+||.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a~ 77 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVAF 77 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEecC
Confidence 479999999999999999999999999999999999899999999999999999999999999 99999999999973
No 93
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.74 E-value=7.8e-18 Score=131.06 Aligned_cols=81 Identities=14% Similarity=0.222 Sum_probs=76.2
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCC---eeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEE
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGP---TSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILS 238 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~---I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~ 238 (247)
..+.++|||+|||+++++++|+++|+.||. |..|.|++++. |+++|||||+|.+.++|++||. |||..|+|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 356689999999999999999999999999 89999999975 9999999999999999999999 999999999999
Q ss_pred EeecCC
Q psy13227 239 VDWSKS 244 (247)
Q Consensus 239 V~~akp 244 (247)
|.++.+
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 999864
No 94
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=1e-18 Score=131.51 Aligned_cols=82 Identities=21% Similarity=0.295 Sum_probs=76.2
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...++|||+|||+++++++|+++|+.||.|.. .++.++.+|.++|||||+|.+.++|++|++ |||..++|+.|.|.|+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45679999999999999999999999999887 677777789999999999999999999999 9999999999999999
Q ss_pred CCCC
Q psy13227 243 KSTN 246 (247)
Q Consensus 243 kp~~ 246 (247)
+++.
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9875
No 95
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.6e-18 Score=127.42 Aligned_cols=82 Identities=18% Similarity=0.271 Sum_probs=76.5
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeE-EEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSK-MYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~-i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
..+.++|||+|||+++++++|+++|..||.|.. |.|+.+ .+|+++|||||+|.+.++|++||.. |+..++|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 355689999999999999999999999999987 889998 6999999999999999999999997 9999999999999
Q ss_pred ecCCC
Q psy13227 241 WSKST 245 (247)
Q Consensus 241 ~akp~ 245 (247)
++.++
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 98865
No 96
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=9.3e-18 Score=124.89 Aligned_cols=81 Identities=26% Similarity=0.378 Sum_probs=73.8
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
..+.++|||+|||.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|+.|+..|||..++|+.|.|+|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456899999999999999999999999988766 24789999999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy13227 242 SKSTNQ 247 (247)
Q Consensus 242 akp~~~ 247 (247)
++++.+
T Consensus 88 a~~~~~ 93 (96)
T 1fjc_A 88 TGEKGG 93 (96)
T ss_dssp CSSSCC
T ss_pred cCCCCC
Confidence 998753
No 97
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.5e-18 Score=133.70 Aligned_cols=83 Identities=14% Similarity=0.206 Sum_probs=76.0
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
..+.++|||+|||+++++++|+++|..||.|..+.++.+..+|.++|||||+|.+.++|+.||. |||..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3556899999999999999999999999999886666666799999999999999999999999 999999999999999
Q ss_pred cCCC
Q psy13227 242 SKST 245 (247)
Q Consensus 242 akp~ 245 (247)
+.++
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8753
No 98
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=127.86 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=71.9
Q ss_pred CCCccEEEEeecCC-CCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCc--eeCCeEEE
Q psy13227 162 NDDTTAIRISNLSV-NTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGY--GYDHLILS 238 (247)
Q Consensus 162 ~~~~~tl~V~nLp~-~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~--~i~g~~L~ 238 (247)
.+..++|||+|||+ ++++++|+++|++||.|.++.|+++ +|||||+|.+.++|..|++.||+. .++|+.|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 35678999999999 9999999999999999999999876 479999999999999999999975 49999999
Q ss_pred EeecCCCC
Q psy13227 239 VDWSKSTN 246 (247)
Q Consensus 239 V~~akp~~ 246 (247)
|+||++..
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99999653
No 99
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=6.8e-18 Score=128.47 Aligned_cols=81 Identities=19% Similarity=0.396 Sum_probs=74.9
Q ss_pred CCccEEEEeecCCCC------CHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCe-
Q psy13227 163 DDTTAIRISNLSVNT------SENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHL- 235 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~------te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~- 235 (247)
...++|||+|||+.+ ++++|+++|++||.|..+.|+ +.+|.++|||||+|.+.++|+.|+..|||..++|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 345799999999999 779999999999999999988 36899999999999999999999999999999998
Q ss_pred EEEEeecCCC
Q psy13227 236 ILSVDWSKST 245 (247)
Q Consensus 236 ~L~V~~akp~ 245 (247)
.|.|.|+...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999999764
No 100
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=124.46 Aligned_cols=79 Identities=19% Similarity=0.398 Sum_probs=73.7
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
..+.++|||+|||+++++++|+++|++||.|..+.+.++ +|||||+|.+.++|++|++.|||..++|+.|+|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 356689999999999999999999999999999999754 68999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
++++.
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 99875
No 101
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=121.91 Aligned_cols=76 Identities=24% Similarity=0.447 Sum_probs=71.8
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
.+.++|||+|||+++++++|+++|++||.|..+.+. +|||||+|.+.++|+.|+..|||..++|+.|+|+|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 556899999999999999999999999999999986 579999999999999999999999999999999999
Q ss_pred CCCC
Q psy13227 243 KSTN 246 (247)
Q Consensus 243 kp~~ 246 (247)
+++.
T Consensus 78 ~~~~ 81 (90)
T 2dnq_A 78 KNKS 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9875
No 102
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.73 E-value=8.1e-18 Score=125.29 Aligned_cols=82 Identities=21% Similarity=0.447 Sum_probs=75.7
Q ss_pred CCCccEEEEeecCCCCCHHHHH----HHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEE
Q psy13227 162 NDDTTAIRISNLSVNTSENDLE----DLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLIL 237 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~----~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L 237 (247)
....++|||+|||+++++++|+ ++|++||.|..+.+.. +|.++|||||+|.+.++|..|+..|||..++|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3556899999999999999999 9999999999998873 57889999999999999999999999999999999
Q ss_pred EEeecCCCC
Q psy13227 238 SVDWSKSTN 246 (247)
Q Consensus 238 ~V~~akp~~ 246 (247)
+|.|+++++
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999999875
No 103
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.1e-17 Score=126.14 Aligned_cols=79 Identities=16% Similarity=0.392 Sum_probs=74.2
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
....++|||+|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|+.|+..|||..++|+.|+|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 455689999999999999999999999999999999876 68999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
+++++
T Consensus 96 a~~~~ 100 (109)
T 1x4g_A 96 GKESP 100 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 99875
No 104
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=126.70 Aligned_cols=80 Identities=16% Similarity=0.308 Sum_probs=74.5
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...++|||+|||+++++++|+++|++||.+ .|.|++++ +|+++|||||+|.+.++|++||. +|+..++++.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 455799999999999999999999999954 99999997 99999999999999999999996 7999999999999998
Q ss_pred CCC
Q psy13227 243 KST 245 (247)
Q Consensus 243 kp~ 245 (247)
.+.
T Consensus 90 ~~~ 92 (102)
T 1wez_A 90 STA 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 105
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.73 E-value=5.5e-18 Score=146.69 Aligned_cols=81 Identities=23% Similarity=0.303 Sum_probs=77.1
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccC--CeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFG--PTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG--~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
..++|||+||++++++++|+++|+.|| .|.+|.|++++.+|+++|||||+|.+.++|++||+.|||..|+|+.|+|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 557999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q psy13227 242 SKS 244 (247)
Q Consensus 242 akp 244 (247)
+++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 875
No 106
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.2e-17 Score=125.55 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=72.2
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...++|||+|||.++++++|+++|+.||.|.++.+. .++|||||+|.+.++|+.|+..|||..++|+.|+|.|+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 456899999999999999999999999999999987 35789999999999999999999999999999999999
Q ss_pred CCC
Q psy13227 243 KST 245 (247)
Q Consensus 243 kp~ 245 (247)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 985
No 107
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.7e-17 Score=124.57 Aligned_cols=79 Identities=14% Similarity=0.296 Sum_probs=71.7
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhc--CceeCCeEEEE
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLN--GYGYDHLILSV 239 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~Ln--G~~i~g~~L~V 239 (247)
....++|||+|||+++++++|+++|++||.|..+.++++ +|||||+|.+.++|+.|++.|+ +..++|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 355679999999999999999999999999999988765 7899999999999999999875 67799999999
Q ss_pred eecCCCC
Q psy13227 240 DWSKSTN 246 (247)
Q Consensus 240 ~~akp~~ 246 (247)
+|++++.
T Consensus 86 ~~a~~~~ 92 (101)
T 2cq1_A 86 QYSNHKE 92 (101)
T ss_dssp EECSCSS
T ss_pred EEcCccc
Confidence 9999764
No 108
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=123.52 Aligned_cols=80 Identities=19% Similarity=0.337 Sum_probs=72.8
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...++|||+|||+++++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|+.|+..|||..++|+.|.|+|+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4567999999999999999999999999996 666644 57899999999999999999999999999999999999
Q ss_pred CCCCC
Q psy13227 243 KSTNQ 247 (247)
Q Consensus 243 kp~~~ 247 (247)
+++.+
T Consensus 92 ~~~~~ 96 (97)
T 2e5j_A 92 RQQRD 96 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98763
No 109
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=119.90 Aligned_cols=76 Identities=22% Similarity=0.366 Sum_probs=71.0
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHh-cCceeCCeEEEEe
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL-NGYGYDHLILSVD 240 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~L-nG~~i~g~~L~V~ 240 (247)
....++|||+|||.++++++|+++|++||.|..+.+.++ +|||||+|.+.++|+.|+..| ||..++|+.|+|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 455679999999999999999999999999999999864 689999999999999999998 9999999999999
Q ss_pred ecC
Q psy13227 241 WSK 243 (247)
Q Consensus 241 ~ak 243 (247)
|++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 986
No 110
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=131.46 Aligned_cols=81 Identities=19% Similarity=0.347 Sum_probs=73.6
Q ss_pred CCccEEEEeecCCCCCHHHHH----HHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEE
Q psy13227 163 DDTTAIRISNLSVNTSENDLE----DLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILS 238 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~----~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~ 238 (247)
...++|||+|||+.+++++|+ ++|++||.|.+|.+.. ++.++|||||+|.+.++|..|+..|||..+.|+.|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 345799999999999999876 6999999999988753 688999999999999999999999999999999999
Q ss_pred EeecCCCC
Q psy13227 239 VDWSKSTN 246 (247)
Q Consensus 239 V~~akp~~ 246 (247)
|.||+++.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99999864
No 111
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=4e-19 Score=137.23 Aligned_cols=84 Identities=24% Similarity=0.391 Sum_probs=80.0
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeE--------EEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCC
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSK--------MYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDH 234 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~--------i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g 234 (247)
.+.++|||+|||.++++++|+++|++||.|.. +.++.++.++.++|||||+|.+.++|+.|+..|||..++|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45679999999999999999999999999998 9999998899999999999999999999999999999999
Q ss_pred eEEEEeecCCCC
Q psy13227 235 LILSVDWSKSTN 246 (247)
Q Consensus 235 ~~L~V~~akp~~ 246 (247)
+.|+|+|+++++
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999999874
No 112
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=6.3e-17 Score=119.72 Aligned_cols=77 Identities=21% Similarity=0.420 Sum_probs=72.0
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
....++|||+|||+++++++|+++|++||.|..+.+.+ +||||+|.+.++|++|+..|||..++|+.|+|+|
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 46678999999999999999999999999999999873 3999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
++++.
T Consensus 79 a~~~~ 83 (92)
T 2dgt_A 79 STSRL 83 (92)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 99874
No 113
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.72 E-value=2.3e-17 Score=122.93 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=69.3
Q ss_pred ccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecC
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ak 243 (247)
+..|||+||++.+++++|+++|.+||+|.++++.. ++|||||+|.+.++|..|++.||+..++|+.|+|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 46899999999999999999999999999999865 58999999999999999999999999999999999985
No 114
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.9e-18 Score=131.70 Aligned_cols=84 Identities=27% Similarity=0.407 Sum_probs=73.4
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...++|||+|||+++++++|+++|+.||.|..+.+..+..+|.++|||||+|.+.++|+.|+..|||..++|+.|.|+|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 45689999999999999999999999999843322222237899999999999999999999999999999999999999
Q ss_pred CCCC
Q psy13227 243 KSTN 246 (247)
Q Consensus 243 kp~~ 246 (247)
+++.
T Consensus 103 ~~~~ 106 (115)
T 2cpx_A 103 KNKK 106 (115)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 9764
No 115
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3e-17 Score=125.68 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=71.3
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCce--eCCeEEEE
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYG--YDHLILSV 239 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~--i~g~~L~V 239 (247)
.....+|||+|||+++++++|+++|++||.|..|.++++ ||||||+|.+.++|..|++.||+.. ++|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345679999999999999999999999999999998764 6899999999999999999987754 99999999
Q ss_pred eecCCCC
Q psy13227 240 DWSKSTN 246 (247)
Q Consensus 240 ~~akp~~ 246 (247)
+|++++.
T Consensus 86 ~~a~~~~ 92 (104)
T 1wex_A 86 NYSTSKR 92 (104)
T ss_dssp EECSSSS
T ss_pred EEccCcc
Confidence 9998763
No 116
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=125.36 Aligned_cols=76 Identities=24% Similarity=0.454 Sum_probs=72.3
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCCC
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKST 245 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp~ 245 (247)
++|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|+.|+..|||..++|+.|.|+|++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999877 6899999999999999999999999999999999999876
Q ss_pred C
Q psy13227 246 N 246 (247)
Q Consensus 246 ~ 246 (247)
+
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 117
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=7.2e-17 Score=129.28 Aligned_cols=82 Identities=23% Similarity=0.473 Sum_probs=78.8
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.||
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CC
Q psy13227 243 KS 244 (247)
Q Consensus 243 kp 244 (247)
++
T Consensus 165 ~~ 166 (166)
T 3md3_A 165 AK 166 (166)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 118
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=3.4e-17 Score=125.63 Aligned_cols=77 Identities=26% Similarity=0.503 Sum_probs=72.5
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
....++|||+|||.++++++|+++|++||.|..+.+. +|||||+|.+.++|+.|+..|||..++|+.|.|.|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3556899999999999999999999999999999987 68999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
+++++
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 99875
No 119
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=5.9e-17 Score=121.74 Aligned_cols=76 Identities=22% Similarity=0.302 Sum_probs=71.7
Q ss_pred CCccEEEEeecCC-CCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 163 DDTTAIRISNLSV-NTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 163 ~~~~tl~V~nLp~-~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
.+.++|||+|||+ ++++++|+++|+.||.|..+.+. +|||||+|.+.++|..|+..|||..++|+.|+|+|
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 5568999999998 99999999999999999999882 78999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
+++++
T Consensus 92 a~~~~ 96 (97)
T 2xnq_A 92 SSSNA 96 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 99875
No 120
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=124.73 Aligned_cols=77 Identities=23% Similarity=0.328 Sum_probs=71.2
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCce--eCCeEEEEe
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYG--YDHLILSVD 240 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~--i~g~~L~V~ 240 (247)
..+.+|||+|||+++++++|+++|++||.|.++.++++ ||||||+|.+.++|..|++.|||.. +.|+.|.|+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 45679999999999999999999999999999998753 6899999999999999999999886 789999999
Q ss_pred ecCCC
Q psy13227 241 WSKST 245 (247)
Q Consensus 241 ~akp~ 245 (247)
||+++
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 99986
No 121
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.71 E-value=8.4e-17 Score=129.02 Aligned_cols=82 Identities=24% Similarity=0.475 Sum_probs=78.7
Q ss_pred ccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCC
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKS 244 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp 244 (247)
.++|||+|||+++++++|+++|+.||.|..+.+++++.+|.++|||||+|.+.++|..|++.|||..++|+.|.|.|+.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 47899999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CC
Q psy13227 245 TN 246 (247)
Q Consensus 245 ~~ 246 (247)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 122
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=3e-17 Score=127.27 Aligned_cols=79 Identities=19% Similarity=0.256 Sum_probs=71.4
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccC-CeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFG-PTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG-~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
..++|||+|||+++++++|+++|++|| .|..+.+.. +.++|||||+|.+.++|+.||+.|||..++|+.|+|+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 347999999999999999999999999 899998853 347899999999999999999999999999999999999
Q ss_pred CCCC
Q psy13227 243 KSTN 246 (247)
Q Consensus 243 kp~~ 246 (247)
+.++
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 8654
No 123
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-16 Score=119.52 Aligned_cols=77 Identities=26% Similarity=0.435 Sum_probs=71.1
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhcc--CCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEE
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQF--GPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSV 239 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~f--G~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V 239 (247)
....++|||+|||+++++++|+++|++| |.|.++.+. +|||||+|.+.++|+.|+..|||..++|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3556899999999999999999999999 899988764 579999999999999999999999999999999
Q ss_pred eecCCCC
Q psy13227 240 DWSKSTN 246 (247)
Q Consensus 240 ~~akp~~ 246 (247)
+|++++.
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9999874
No 124
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.71 E-value=7.2e-17 Score=121.96 Aligned_cols=76 Identities=25% Similarity=0.436 Sum_probs=71.1
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...++|||+|||+++++++|+++|++||.|..+.++ +|||||+|.+.++|++|+..|||..++|+.|.|.|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 456799999999999999999999999999999986 459999999999999999999999999999999999
Q ss_pred CCCC
Q psy13227 243 KSTN 246 (247)
Q Consensus 243 kp~~ 246 (247)
+++.
T Consensus 81 ~~~~ 84 (103)
T 2dgu_A 81 KPPD 84 (103)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8764
No 125
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.71 E-value=7.4e-17 Score=136.84 Aligned_cols=83 Identities=22% Similarity=0.348 Sum_probs=78.3
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...++|||+|||+++++++|+++|++||.|.+|.|++|+.+|+++|||||+|.+.++|+.|+..||+..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q psy13227 243 KST 245 (247)
Q Consensus 243 kp~ 245 (247)
.+.
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 764
No 126
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.71 E-value=5.7e-17 Score=130.56 Aligned_cols=82 Identities=24% Similarity=0.495 Sum_probs=78.8
Q ss_pred ccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCC
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKS 244 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp 244 (247)
.++|||+|||.++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|..|++.|||..++|+.|.|.|+.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 47999999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CC
Q psy13227 245 TN 246 (247)
Q Consensus 245 ~~ 246 (247)
..
T Consensus 83 ~~ 84 (168)
T 1b7f_A 83 GG 84 (168)
T ss_dssp CS
T ss_pred Cc
Confidence 64
No 127
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.3e-17 Score=127.99 Aligned_cols=78 Identities=17% Similarity=0.323 Sum_probs=72.0
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcC--ceeCCeEEEEe
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG--YGYDHLILSVD 240 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG--~~i~g~~L~V~ 240 (247)
...++|||+|||+++++++|+++|++||.|.+|.|+++ +|||||+|.+.++|..|++.|++ ..++|+.|+|+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 45679999999999999999999999999999999875 68999999999999999999885 57999999999
Q ss_pred ecCCCC
Q psy13227 241 WSKSTN 246 (247)
Q Consensus 241 ~akp~~ 246 (247)
||+++.
T Consensus 103 ~a~~k~ 108 (119)
T 2ad9_A 103 FSNHKE 108 (119)
T ss_dssp ECSSSS
T ss_pred EccCCC
Confidence 999864
No 128
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=8.9e-18 Score=121.64 Aligned_cols=72 Identities=21% Similarity=0.475 Sum_probs=67.6
Q ss_pred cEEEEeecCCCC------CHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCe-EEE
Q psy13227 166 TAIRISNLSVNT------SENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHL-ILS 238 (247)
Q Consensus 166 ~tl~V~nLp~~~------te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~-~L~ 238 (247)
++|||+|||..+ ++++|+++|++||.|.++.++ +.+|.++|||||+|.+.++|+.|+..|||..++|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 679999999999999999987 35899999999999999999999999999999999 887
Q ss_pred E
Q psy13227 239 V 239 (247)
Q Consensus 239 V 239 (247)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 129
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.70 E-value=5.7e-18 Score=120.37 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=72.1
Q ss_pred EEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 167 AIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 167 tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
+|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|+. +++..++|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999999899999999999999999999999 5999999999999986
No 130
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.7e-17 Score=120.21 Aligned_cols=80 Identities=19% Similarity=0.367 Sum_probs=73.3
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEE-EEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKM-YLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i-~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
...++|||+|||+++++++|+++|+.||.|..+ .++.++.++. |||+|.+.++|+.|+..|||..++|+.|.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 445789999999999999999999999999999 5888875544 99999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
++|+.
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 99873
No 131
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.70 E-value=1.8e-17 Score=124.74 Aligned_cols=80 Identities=15% Similarity=0.388 Sum_probs=75.7
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...++|||+|||+++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|+.|+. ||..++|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345799999999999999999999999999999999998 99999999999999999999999 999999999999998
Q ss_pred CCC
Q psy13227 243 KST 245 (247)
Q Consensus 243 kp~ 245 (247)
.++
T Consensus 84 ~~~ 86 (102)
T 2xs2_A 84 IRK 86 (102)
T ss_dssp EEC
T ss_pred CcC
Confidence 765
No 132
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-16 Score=119.30 Aligned_cols=77 Identities=14% Similarity=0.260 Sum_probs=70.9
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
....++|||+|| ++++++|+++|++||.|..|.+. .++|||||+|.+.++|++|+..|||..++|+.|.|.|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 356689999996 89999999999999999999984 4678999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
+++++
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 99875
No 133
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=8.4e-17 Score=118.57 Aligned_cols=77 Identities=25% Similarity=0.381 Sum_probs=71.6
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
....++|||+|||+++++++|+++|++||.|..+.+++ +||||+|.+.++|+.|+..|||..++|+.|+|+|
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35668999999999999999999999999999999873 3999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
++++.
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 99764
No 134
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.70 E-value=8.6e-17 Score=134.79 Aligned_cols=84 Identities=20% Similarity=0.396 Sum_probs=80.6
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy13227 243 KSTN 246 (247)
Q Consensus 243 kp~~ 246 (247)
++++
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 9875
No 135
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.8e-17 Score=126.15 Aligned_cols=79 Identities=18% Similarity=0.234 Sum_probs=73.8
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
.+..+|||+|||+++++++|+++|+.| .|..|.|+.++ +|+++|||||+|.+.++|++|| .||+..++|+.|.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 455799999999999999999999999 89999999997 5999999999999999999999 59999999999999888
Q ss_pred CC
Q psy13227 243 KS 244 (247)
Q Consensus 243 kp 244 (247)
.+
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 64
No 136
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=4.5e-17 Score=125.15 Aligned_cols=80 Identities=20% Similarity=0.413 Sum_probs=74.0
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
+..++|||+|||+++++++|+++|+.||.|..+.++.+ +.++|||||+|.+.++|..|+..|||..++|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 34579999999999999999999999999999999876 455999999999999999999999999999999999999
Q ss_pred CCC
Q psy13227 243 KST 245 (247)
Q Consensus 243 kp~ 245 (247)
+++
T Consensus 83 ~~~ 85 (115)
T 3lqv_A 83 NAN 85 (115)
T ss_dssp CHH
T ss_pred cCC
Confidence 863
No 137
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.8e-17 Score=120.99 Aligned_cols=77 Identities=27% Similarity=0.397 Sum_probs=69.9
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCC-eeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcC-ceeCCeEEEEe
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGP-TSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG-YGYDHLILSVD 240 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~-I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG-~~i~g~~L~V~ 240 (247)
...++|||+|||+++++++|+++|++||. |..+.+ .++|||||+|.+.++|+.|+..||| ..++|+.|+|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-------EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-------cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45679999999999999999999999999 665555 2578999999999999999999999 99999999999
Q ss_pred ecCCCC
Q psy13227 241 WSKSTN 246 (247)
Q Consensus 241 ~akp~~ 246 (247)
|++++.
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 999874
No 138
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.70 E-value=1.5e-17 Score=132.86 Aligned_cols=84 Identities=27% Similarity=0.347 Sum_probs=72.8
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEE--E---eecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEE
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMY--L---SRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLIL 237 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~--l---~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L 237 (247)
...++|||+|||+++++++|+++|+.||.|..+. + ++...+|.++|||||+|.+.++|..|+..|||..++|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 4457999999999999999999999999987641 1 1112478999999999999999999999999999999999
Q ss_pred EEeecCCCC
Q psy13227 238 SVDWSKSTN 246 (247)
Q Consensus 238 ~V~~akp~~ 246 (247)
.|.|+++..
T Consensus 123 ~V~~a~~~~ 131 (143)
T 3egn_A 123 VVQFARSAR 131 (143)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCC
Confidence 999998753
No 139
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.70 E-value=3.5e-17 Score=126.71 Aligned_cols=75 Identities=21% Similarity=0.290 Sum_probs=67.3
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeE-----EE
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLI-----LS 238 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~-----L~ 238 (247)
..++|||+|||+++++++|+++|.+||.|..+.|+.+ |||||+|.+.++|+.||+.|||..|+|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 3478999999999999999999999999999999766 89999999999999999999999999988 88
Q ss_pred EeecCCC
Q psy13227 239 VDWSKST 245 (247)
Q Consensus 239 V~~akp~ 245 (247)
|..+.++
T Consensus 88 v~~~~~~ 94 (115)
T 3beg_B 88 VKVDGPR 94 (115)
T ss_dssp EEECC--
T ss_pred eccCCCC
Confidence 8887765
No 140
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.70 E-value=7.6e-17 Score=129.74 Aligned_cols=80 Identities=25% Similarity=0.439 Sum_probs=75.3
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
....++|||+|||+++++++|+++|++||.|.++.++.+ ++|||||+|.+.++|..|+..|||..++|+.|+|+|
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 355689999999999999999999999999999999876 589999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
++|++
T Consensus 145 a~~~~ 149 (150)
T 2i2y_A 145 SNGEK 149 (150)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 99975
No 141
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.69 E-value=1.1e-16 Score=132.35 Aligned_cols=85 Identities=25% Similarity=0.432 Sum_probs=81.1
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...++|||+|||.++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.|+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy13227 243 KSTNQ 247 (247)
Q Consensus 243 kp~~~ 247 (247)
+|+.+
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98753
No 142
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.69 E-value=6.9e-18 Score=128.85 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=76.5
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCC---eeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEE
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGP---TSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILS 238 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~---I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~ 238 (247)
..+.++|||+|||+++++++|+++|+.||. |..|.|+.++. |+++|||||+|.+.++|+.||. |||..++|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 356689999999999999999999999988 89999999986 9999999999999999999999 999999999999
Q ss_pred EeecCCC
Q psy13227 239 VDWSKST 245 (247)
Q Consensus 239 V~~akp~ 245 (247)
|.++.++
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998753
No 143
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.6e-17 Score=125.93 Aligned_cols=76 Identities=22% Similarity=0.357 Sum_probs=70.7
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecC
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ak 243 (247)
+.++|||+|||+++++++|+++|++||.|.+|.|+. ++|||||+|.+.++|+.|+..|||..++|+.|.|+|++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999998864 57899999999999999999999999999999999997
Q ss_pred CC
Q psy13227 244 ST 245 (247)
Q Consensus 244 p~ 245 (247)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 144
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=5.5e-17 Score=121.22 Aligned_cols=78 Identities=22% Similarity=0.286 Sum_probs=70.7
Q ss_pred CCCCccEEEEeecCC-CCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEE
Q psy13227 161 RNDDTTAIRISNLSV-NTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSV 239 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~-~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V 239 (247)
..++.++|||+|||+ ++++++|+++|++||.|..+.+. +|||||+|.+.++|+.|+..|||..++|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 346678999999998 99999999999999999999883 689999999999999999999999999999999
Q ss_pred eecCCCC
Q psy13227 240 DWSKSTN 246 (247)
Q Consensus 240 ~~akp~~ 246 (247)
+|++++.
T Consensus 78 ~~a~~~~ 84 (96)
T 2kvi_A 78 EVSSSNA 84 (96)
T ss_dssp EEEECCC
T ss_pred EEcCcCC
Confidence 9998653
No 145
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=2.7e-16 Score=120.14 Aligned_cols=75 Identities=20% Similarity=0.365 Sum_probs=70.2
Q ss_pred CCccEEEEeecCCC-CCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 163 DDTTAIRISNLSVN-TSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 163 ~~~~tl~V~nLp~~-~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
...++|||+|||++ +++++|+++|++||.|..|.+ ++|||||+|.+.++|+.|+..|||..++|+.|+|+|
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34579999999999 999999999999999999988 578999999999999999999999999999999999
Q ss_pred cCCC
Q psy13227 242 SKST 245 (247)
Q Consensus 242 akp~ 245 (247)
++++
T Consensus 97 a~~~ 100 (110)
T 1wf1_A 97 AGEP 100 (110)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9854
No 146
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.68 E-value=5.5e-17 Score=130.73 Aligned_cols=82 Identities=15% Similarity=0.337 Sum_probs=78.4
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecC
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ak 243 (247)
..++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++ +||..++|+.|.|.||.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 45689999999999999999999999999999999998899999999999999999999998 89999999999999999
Q ss_pred CCC
Q psy13227 244 STN 246 (247)
Q Consensus 244 p~~ 246 (247)
|++
T Consensus 165 pk~ 167 (167)
T 2cjk_A 165 PRH 167 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 974
No 147
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=117.82 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=70.9
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...++|||+|||+++++++|+++|+.||.|..| +.++.+|. ||||+|.+.++|+.|+. |||..++|+.|.|+++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 455799999999999999999999999999987 66666666 99999999999999999 9999999999999999
Q ss_pred CCCC
Q psy13227 243 KSTN 246 (247)
Q Consensus 243 kp~~ 246 (247)
.++.
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 8653
No 148
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.68 E-value=9.1e-17 Score=133.83 Aligned_cols=82 Identities=28% Similarity=0.462 Sum_probs=78.5
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...++|||+|||+.+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|+.|+..|||..|+|+.|.|+||
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred CCC
Q psy13227 243 KST 245 (247)
Q Consensus 243 kp~ 245 (247)
.+.
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 864
No 149
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.67 E-value=2.9e-16 Score=129.67 Aligned_cols=83 Identities=17% Similarity=0.308 Sum_probs=77.9
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
..+.++|||+|||+++++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+.. ++..++|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 45678999999999999999999999999999999999998999999999999999999999985 99999999999999
Q ss_pred cCCC
Q psy13227 242 SKST 245 (247)
Q Consensus 242 akp~ 245 (247)
+.++
T Consensus 89 ~~~~ 92 (196)
T 1l3k_A 89 AVSR 92 (196)
T ss_dssp CCC-
T ss_pred ccCc
Confidence 8765
No 150
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.67 E-value=1.4e-16 Score=124.76 Aligned_cols=77 Identities=14% Similarity=0.260 Sum_probs=70.9
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
....++|||+|| ++++++|+++|++||.|..|.+. .++|||||+|.+.++|+.|+..|||..++|+.|.|.|
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356789999996 69999999999999999999985 4678999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
+++++
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 99875
No 151
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.67 E-value=3.1e-16 Score=126.92 Aligned_cols=81 Identities=25% Similarity=0.434 Sum_probs=77.3
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...++|||+|||.++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|+..|||..++|+.|.|+||
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34578999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred C
Q psy13227 243 K 243 (247)
Q Consensus 243 k 243 (247)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 4
No 152
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=8e-17 Score=125.21 Aligned_cols=78 Identities=22% Similarity=0.295 Sum_probs=70.2
Q ss_pred CCccEEEEeecCCC-CCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcC--ceeCCeEEEE
Q psy13227 163 DDTTAIRISNLSVN-TSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG--YGYDHLILSV 239 (247)
Q Consensus 163 ~~~~tl~V~nLp~~-~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG--~~i~g~~L~V 239 (247)
...++|||+|||++ +++++|+++|++||.|.++.|++ ++|||||+|.+.++|+.|++.||+ ..++|+.|+|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 44679999999998 99999999999999999999974 368999999999999999998875 4599999999
Q ss_pred eecCCCC
Q psy13227 240 DWSKSTN 246 (247)
Q Consensus 240 ~~akp~~ 246 (247)
+||+++.
T Consensus 97 ~~a~~~~ 103 (112)
T 1x4f_A 97 DLSEKYK 103 (112)
T ss_dssp EEECSCS
T ss_pred EECcccc
Confidence 9998764
No 153
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=4.4e-16 Score=124.67 Aligned_cols=80 Identities=24% Similarity=0.443 Sum_probs=75.0
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCCC
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKST 245 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp~ 245 (247)
++|||+|||.++++++|+++|++||.|.++.++.++ ++.++|||||+|.+.++|..|+..|||..+.|+.|.|.|+.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 479999999999999999999999999999999997 6889999999999999999999999999999999999999765
Q ss_pred C
Q psy13227 246 N 246 (247)
Q Consensus 246 ~ 246 (247)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 154
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.66 E-value=2.3e-16 Score=148.56 Aligned_cols=84 Identities=20% Similarity=0.392 Sum_probs=80.0
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...++|||+|||+.+++++|.++|+.||.|..|.|+.++.+|.++|||||+|.+.++|+.||..|||..|+|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 44579999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy13227 243 KSTN 246 (247)
Q Consensus 243 kp~~ 246 (247)
+++.
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8753
No 155
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=6e-17 Score=127.72 Aligned_cols=81 Identities=14% Similarity=0.213 Sum_probs=74.3
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCe----eEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEE
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPT----SKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLIL 237 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I----~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L 237 (247)
+.+.++|||+|||+++++++|+++|++||.| ..|.|+.+. +|+++|||||+|.+.++|++||.. |+..++|+.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3566899999999999999999999999985 689999995 999999999999999999999995 9999999999
Q ss_pred EEeecCC
Q psy13227 238 SVDWSKS 244 (247)
Q Consensus 238 ~V~~akp 244 (247)
.|..+.+
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9988764
No 156
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.66 E-value=4.3e-16 Score=128.63 Aligned_cols=83 Identities=19% Similarity=0.287 Sum_probs=76.1
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+.. +|..++|+.|.|.|+
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 4457999999999999999999999999999999999988999999999999999999999985 899999999999999
Q ss_pred CCCC
Q psy13227 243 KSTN 246 (247)
Q Consensus 243 kp~~ 246 (247)
.|+.
T Consensus 181 ~~k~ 184 (196)
T 1l3k_A 181 LSKQ 184 (196)
T ss_dssp C---
T ss_pred CChh
Confidence 9874
No 157
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.66 E-value=3.4e-16 Score=115.05 Aligned_cols=74 Identities=23% Similarity=0.379 Sum_probs=69.4
Q ss_pred ccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecCC
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKS 244 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~akp 244 (247)
.++|||+|||+++++++|+++|++| .|..+.+. .++|||||+|.+.++|++|++.|||..++|+.|+|+|+..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 4689999999999999999999999 99999884 5789999999999999999999999999999999999976
Q ss_pred C
Q psy13227 245 T 245 (247)
Q Consensus 245 ~ 245 (247)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 158
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.66 E-value=4.4e-16 Score=132.05 Aligned_cols=80 Identities=26% Similarity=0.358 Sum_probs=75.4
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecC
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ak 243 (247)
...+|||+|||+++++++|+++|+.||.|..+.|+++. +.++|||||+|.+.++|++||+.|||..|+|+.|.|.|++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45689999999999999999999999999999999985 5589999999999999999999999999999999999998
Q ss_pred CC
Q psy13227 244 ST 245 (247)
Q Consensus 244 p~ 245 (247)
++
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 75
No 159
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.65 E-value=7.5e-16 Score=122.70 Aligned_cols=77 Identities=23% Similarity=0.324 Sum_probs=70.6
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeE-EEEEecCHHHHHHHHHHhcCceeCC--eEEEEe
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGF-AYIHFKNKADAAKAIQYLNGYGYDH--LILSVD 240 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGf-aFV~F~s~e~A~~Ai~~LnG~~i~g--~~L~V~ 240 (247)
....|||+||++.+++++|+++|++||.|.+|.+..+. +|| |||+|.+.++|+.|++.|||..|.| +.|+|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 34578999999999999999999999999999887642 678 9999999999999999999999988 999999
Q ss_pred ecCCC
Q psy13227 241 WSKST 245 (247)
Q Consensus 241 ~akp~ 245 (247)
||+++
T Consensus 102 ~ak~~ 106 (130)
T 3zzy_A 102 FSKLT 106 (130)
T ss_dssp ECSCS
T ss_pred ecCCC
Confidence 99986
No 160
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=4.6e-16 Score=115.24 Aligned_cols=76 Identities=12% Similarity=0.356 Sum_probs=63.7
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCce--eCCeEEEE
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYG--YDHLILSV 239 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~--i~g~~L~V 239 (247)
....++|||+|||+++++++|+++|++||.|.++.|+++ ++|||||+|.+.++|+. |+|.. +.|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 355689999999999999999999999999999999875 68999999999999883 56665 45999999
Q ss_pred eecCCCC
Q psy13227 240 DWSKSTN 246 (247)
Q Consensus 240 ~~akp~~ 246 (247)
.+++|+.
T Consensus 79 ~~a~~k~ 85 (89)
T 3d2w_A 79 SNAEPKH 85 (89)
T ss_dssp EECC---
T ss_pred EEcCCCC
Confidence 9999875
No 161
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.65 E-value=4e-16 Score=123.96 Aligned_cols=78 Identities=18% Similarity=0.188 Sum_probs=71.4
Q ss_pred cEEEEeec----CCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecC----HHH----HHHHHH--HhcCce
Q psy13227 166 TAIRISNL----SVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKN----KAD----AAKAIQ--YLNGYG 231 (247)
Q Consensus 166 ~tl~V~nL----p~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s----~e~----A~~Ai~--~LnG~~ 231 (247)
+.|||+|| |+.+++.+|+++|+.||.|.++.++.|+.||.++|||||+|.+ .++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 333 888988 789999
Q ss_pred eCCeEEEEeecC
Q psy13227 232 YDHLILSVDWSK 243 (247)
Q Consensus 232 i~g~~L~V~~ak 243 (247)
|+|+.|+|.+-+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999754
No 162
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.65 E-value=5.7e-16 Score=127.90 Aligned_cols=79 Identities=22% Similarity=0.239 Sum_probs=71.7
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCC--eEEEEe
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDH--LILSVD 240 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g--~~L~V~ 240 (247)
....+|||+||++.+++++|+++|++||.|.+|.+..+ .++|||||+|.+.++|+.|++.|||..|.| +.|+|+
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 33467999999999999999999999999999998654 257999999999999999999999999965 999999
Q ss_pred ecCCC
Q psy13227 241 WSKST 245 (247)
Q Consensus 241 ~akp~ 245 (247)
|++++
T Consensus 120 ~Ak~~ 124 (164)
T 1sjr_A 120 FSKLT 124 (164)
T ss_dssp ECSSS
T ss_pred EecCC
Confidence 99986
No 163
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.64 E-value=5e-17 Score=130.80 Aligned_cols=81 Identities=15% Similarity=0.264 Sum_probs=74.4
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...++|||+|||+++++++|+++|++|| |..|.|++++. |+++|||||+|.+.++|++|| .+|+..++|+.|.|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4557899999999999999999999999 67999999974 999999999999999999999 68999999999999998
Q ss_pred CCCC
Q psy13227 243 KSTN 246 (247)
Q Consensus 243 kp~~ 246 (247)
.++.
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8753
No 164
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.64 E-value=4.6e-16 Score=135.87 Aligned_cols=80 Identities=14% Similarity=0.276 Sum_probs=71.0
Q ss_pred CCCccEEEEeecCCCC---------CHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCcee
Q psy13227 162 NDDTTAIRISNLSVNT---------SENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGY 232 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~---------te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i 232 (247)
....++|||+||+..+ ++++|+++|++||.|.+|.|+. ++|||||+|.+.++|+.|++.|||..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3567899999999998 7999999999999999999985 379999999999999999999999999
Q ss_pred ------------CCeEEEEeecCCCCC
Q psy13227 233 ------------DHLILSVDWSKSTNQ 247 (247)
Q Consensus 233 ------------~g~~L~V~~akp~~~ 247 (247)
.|+.|.|.||++.+|
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999997654
No 165
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.64 E-value=1.4e-15 Score=122.42 Aligned_cols=80 Identities=24% Similarity=0.408 Sum_probs=76.2
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCC--eEEEEe
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDH--LILSVD 240 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g--~~L~V~ 240 (247)
...++|||+|||..+++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+..|||..++| +.|+|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 345799999999999999999999999999999999998899999999999999999999999999999988 999999
Q ss_pred ec
Q psy13227 241 WS 242 (247)
Q Consensus 241 ~a 242 (247)
||
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 166
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.63 E-value=7.4e-16 Score=129.04 Aligned_cols=83 Identities=17% Similarity=0.284 Sum_probs=76.0
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
.+.++|||+|||.++++++|+++|+.||.|..|.+++++.+|.++|||||+|.+.++|..|++.|||..++|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred CCC
Q psy13227 243 KST 245 (247)
Q Consensus 243 kp~ 245 (247)
.+.
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 764
No 167
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.63 E-value=1.1e-15 Score=123.61 Aligned_cols=82 Identities=22% Similarity=0.357 Sum_probs=75.2
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCC--ceeeEEEEEecCHHHHHHHHHHhcCceeC---CeEEE
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNG--LCKGFAYIHFKNKADAAKAIQYLNGYGYD---HLILS 238 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg--~skGfaFV~F~s~e~A~~Ai~~LnG~~i~---g~~L~ 238 (247)
+.++|||+|||+++++++|+++|++||.|.++.+++++.++ .++|||||+|.+.++|+.|++.|||..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999998776 89999999999999999999999998876 67788
Q ss_pred EeecCCC
Q psy13227 239 VDWSKST 245 (247)
Q Consensus 239 V~~akp~ 245 (247)
+.++.+.
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 8887654
No 168
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.63 E-value=2.3e-16 Score=124.91 Aligned_cols=79 Identities=18% Similarity=0.252 Sum_probs=72.4
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCee--EEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTS--KMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~--~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
.+.++|||+|||+++++++|+++|+.| .|. .|.|++|+. |+++|||||+|.+.++|++||. +++..++|+.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 445789999999999999999999999 677 899999985 9999999999999999999999 58899999999999
Q ss_pred ecCC
Q psy13227 241 WSKS 244 (247)
Q Consensus 241 ~akp 244 (247)
++.+
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8864
No 169
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.62 E-value=1.4e-15 Score=129.29 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=71.4
Q ss_pred CccEEEEeecC-CCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 164 DTTAIRISNLS-VNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 164 ~~~tl~V~nLp-~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
+.++|||+||| +.+++++|+++|++||.|.+|.+++++ +|||||+|.+.++|+.||+.|||..+.|+.|+|.|+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45799999999 899999999999999999999998763 799999999999999999999999999999999999
Q ss_pred CC
Q psy13227 243 KS 244 (247)
Q Consensus 243 kp 244 (247)
+.
T Consensus 78 ~~ 79 (205)
T 3tyt_A 78 KQ 79 (205)
T ss_dssp SC
T ss_pred cC
Confidence 74
No 170
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.62 E-value=1.1e-15 Score=124.24 Aligned_cols=79 Identities=27% Similarity=0.401 Sum_probs=73.4
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
...++|||+|||.++++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|||..++|+.|.|.|+
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 456799999999999999999999999987765 458999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy13227 243 KSTN 246 (247)
Q Consensus 243 kp~~ 246 (247)
+|++
T Consensus 172 ~~k~ 175 (175)
T 1fje_B 172 GEKG 175 (175)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9985
No 171
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.62 E-value=2.1e-15 Score=120.83 Aligned_cols=79 Identities=24% Similarity=0.462 Sum_probs=74.7
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeE--EEEee
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLI--LSVDW 241 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~--L~V~~ 241 (247)
..++|||+|||.++++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|.+|+..|||..++|+. |+|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 4468999999999999999999999999999999999889999999999999999999999999999999964 89988
Q ss_pred c
Q psy13227 242 S 242 (247)
Q Consensus 242 a 242 (247)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 6
No 172
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.4e-16 Score=119.77 Aligned_cols=77 Identities=16% Similarity=0.358 Sum_probs=69.1
Q ss_pred CCccEEEE--eecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCcee-----CCe
Q psy13227 163 DDTTAIRI--SNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGY-----DHL 235 (247)
Q Consensus 163 ~~~~tl~V--~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i-----~g~ 235 (247)
....+||| +||++++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|++|++.|||..+ .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 44578999 779999999999999999999999987642 78999999999999999999999998 688
Q ss_pred EEEEeecCCC
Q psy13227 236 ILSVDWSKST 245 (247)
Q Consensus 236 ~L~V~~akp~ 245 (247)
.|.|.|++..
T Consensus 97 ~l~v~~a~~~ 106 (114)
T 2cq2_A 97 TLYLNFVEKV 106 (114)
T ss_dssp ECEEEEESCC
T ss_pred EEEEEecccC
Confidence 9999998754
No 173
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=7.5e-16 Score=118.74 Aligned_cols=77 Identities=16% Similarity=0.252 Sum_probs=66.2
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCC---CceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEE
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTN---GLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSV 239 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~t---g~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V 239 (247)
.+.++|||+|||+++++++|+++|++||.|. +.++.++.+ |.++|||||+|.+.++|++||+.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4457899999999999999999999999999 888888777 7999999999999999999999883 355555555
Q ss_pred eec
Q psy13227 240 DWS 242 (247)
Q Consensus 240 ~~a 242 (247)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 443
No 174
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.61 E-value=2.7e-15 Score=121.20 Aligned_cols=80 Identities=23% Similarity=0.370 Sum_probs=74.3
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeC---CeEEEE
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYD---HLILSV 239 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~---g~~L~V 239 (247)
...++|||+|||.++++++|+++|++||.|.++.++++. +|.++|||||+|.+.++|.+|+..|||..+. ++.|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 356799999999999999999999999999999999996 7999999999999999999999999998776 499999
Q ss_pred eecC
Q psy13227 240 DWSK 243 (247)
Q Consensus 240 ~~ak 243 (247)
.||.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9983
No 175
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.61 E-value=3.3e-15 Score=130.85 Aligned_cols=83 Identities=22% Similarity=0.448 Sum_probs=75.8
Q ss_pred CCCCccEEEEeecCCCCCHHHHH----HHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeE
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLE----DLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLI 236 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~----~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~ 236 (247)
.....++|||+|||+++++++|+ ++|+.||.|..|.+.+ +|.++|||||+|.+.++|..|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34567899999999999999976 8999999999998875 6889999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q psy13227 237 LSVDWSKSTN 246 (247)
Q Consensus 237 L~V~~akp~~ 246 (247)
|+|.|++++.
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999998653
No 176
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.61 E-value=1.2e-15 Score=122.86 Aligned_cols=80 Identities=15% Similarity=0.404 Sum_probs=75.0
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecC
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ak 243 (247)
+.++|||+|||.++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|..|+. ++..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 45799999999999999999999999999999999999899999999999999999999999 5788999999999987
Q ss_pred CC
Q psy13227 244 ST 245 (247)
Q Consensus 244 p~ 245 (247)
++
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 64
No 177
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=3.4e-15 Score=117.90 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=68.0
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeE-EEEEecCHHHHHHHHHHhcCceeCC--eEEEEeec
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGF-AYIHFKNKADAAKAIQYLNGYGYDH--LILSVDWS 242 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGf-aFV~F~s~e~A~~Ai~~LnG~~i~g--~~L~V~~a 242 (247)
..|||+||++.+++++|+++|++||.|.+|.|.. + .|| |||+|.+.++|..|++.|||..|.| +.|+|+||
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 4578999999999999999999999999999865 2 276 9999999999999999999999987 68999999
Q ss_pred CCCC
Q psy13227 243 KSTN 246 (247)
Q Consensus 243 kp~~ 246 (247)
+++.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 9863
No 178
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.60 E-value=2.6e-15 Score=132.13 Aligned_cols=83 Identities=24% Similarity=0.327 Sum_probs=77.2
Q ss_pred CCccEEEEeecCCC-CCHHHHHHHhhccCCeeEEEEeecCC-CCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 163 DDTTAIRISNLSVN-TSENDLEDLVKQFGPTSKMYLSRDKT-NGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 163 ~~~~tl~V~nLp~~-~te~dL~~lF~~fG~I~~i~l~~d~~-tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
...++|||+|||.. +++++|+++|++||.|..+.++.+.. ||.++|||||.|.+.++|.+|+ .|||..++|+.|.|.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVS 286 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEE
Confidence 45689999999999 99999999999999999999999875 5999999999999999999999 999999999999999
Q ss_pred ecCCCC
Q psy13227 241 WSKSTN 246 (247)
Q Consensus 241 ~akp~~ 246 (247)
|++|++
T Consensus 287 ~a~~k~ 292 (292)
T 2ghp_A 287 LADKKP 292 (292)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 999975
No 179
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.60 E-value=5e-15 Score=113.39 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=72.6
Q ss_pred CCccEEEEeecCC-----CCCHHHHHHHhhccCCeeEEEEeecCCC-CceeeEEEEEecCHHHHHHHHHHhcCceeCCeE
Q psy13227 163 DDTTAIRISNLSV-----NTSENDLEDLVKQFGPTSKMYLSRDKTN-GLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLI 236 (247)
Q Consensus 163 ~~~~tl~V~nLp~-----~~te~dL~~lF~~fG~I~~i~l~~d~~t-g~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~ 236 (247)
..+++|+|.||.. +-.+++|+++|++||.|.++.|++++.+ +.++||+||+|.+.++|.+|+..|||..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3457999999963 2367999999999999999999998654 689999999999999999999999999999999
Q ss_pred EEEeecCC
Q psy13227 237 LSVDWSKS 244 (247)
Q Consensus 237 L~V~~akp 244 (247)
|.|.|+.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999874
No 180
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7.7e-16 Score=112.90 Aligned_cols=76 Identities=11% Similarity=0.331 Sum_probs=65.6
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecC
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ak 243 (247)
..++|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++++. ....+.++.|.|.|++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 4579999999999999999999999999999998765 68999999999999975432 1334689999999999
Q ss_pred CCC
Q psy13227 244 STN 246 (247)
Q Consensus 244 p~~ 246 (247)
|+.
T Consensus 77 ~~~ 79 (88)
T 1wf0_A 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 874
No 181
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.4e-15 Score=112.41 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=65.6
Q ss_pred CccEEEEeecCCCCCHHH----HHHHhhcc-CCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEE
Q psy13227 164 DTTAIRISNLSVNTSEND----LEDLVKQF-GPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILS 238 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~d----L~~lF~~f-G~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~ 238 (247)
..+.|||+|||+.+++++ |+++|+.| |.|..| ++ |||||.|.+.++|.+|++.|||..+.|+.|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 334599999999999988 55899999 599988 34 9999999999999999999999999999999
Q ss_pred EeecCCCC
Q psy13227 239 VDWSKSTN 246 (247)
Q Consensus 239 V~~akp~~ 246 (247)
|+||+.+.
T Consensus 78 v~~A~~~s 85 (96)
T 2diu_A 78 VSFTPKNR 85 (96)
T ss_dssp EESSCCSC
T ss_pred EEecCCCc
Confidence 99999764
No 182
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.59 E-value=3.8e-15 Score=108.38 Aligned_cols=71 Identities=18% Similarity=0.445 Sum_probs=66.0
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhcc----C-------CeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCcee
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQF----G-------PTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGY 232 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~f----G-------~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i 232 (247)
+.++|||+|||+++++++|+++|+.| | .|.++.+.++ +|||||+|.+.++|+.|+ .|||..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 45799999999999999999999999 8 8999988754 789999999999999999 8999999
Q ss_pred CCeEEEEee
Q psy13227 233 DHLILSVDW 241 (247)
Q Consensus 233 ~g~~L~V~~ 241 (247)
+|+.|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 183
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.58 E-value=9.3e-15 Score=128.09 Aligned_cols=83 Identities=17% Similarity=0.210 Sum_probs=78.7
Q ss_pred CCccEEEEeecCCCC-CHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEee
Q psy13227 163 DDTTAIRISNLSVNT-SENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~-te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ 241 (247)
...++|||+|||+++ ++++|+++|+.||.|..+.|..+. +|.++|||||.|.+.++|.+|+..|||..++|+.|.|.|
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 456799999999995 999999999999999999999996 899999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13227 242 SKSTN 246 (247)
Q Consensus 242 akp~~ 246 (247)
++|+.
T Consensus 261 a~~~~ 265 (284)
T 3smz_A 261 CAPGP 265 (284)
T ss_dssp CCSSS
T ss_pred ecCCC
Confidence 99875
No 184
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=9e-15 Score=123.23 Aligned_cols=79 Identities=15% Similarity=0.297 Sum_probs=73.0
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecC
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ak 243 (247)
..++|||+|||+++++++|+++|++||.|..|.++++. +|.++|||||+|.+.++|+.|+..+ +..++|+.|.|.|++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 35799999999999999999999999999999999996 6999999999999999999999865 459999999999986
Q ss_pred C
Q psy13227 244 S 244 (247)
Q Consensus 244 p 244 (247)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 4
No 185
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.57 E-value=1.4e-14 Score=126.96 Aligned_cols=82 Identities=24% Similarity=0.475 Sum_probs=78.5
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecC
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ak 243 (247)
..++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..++|+.|.|.|+.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 44799999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CC
Q psy13227 244 ST 245 (247)
Q Consensus 244 p~ 245 (247)
++
T Consensus 174 ~~ 175 (284)
T 3smz_A 174 AG 175 (284)
T ss_dssp GG
T ss_pred CC
Confidence 65
No 186
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.4e-14 Score=110.03 Aligned_cols=81 Identities=22% Similarity=0.291 Sum_probs=70.0
Q ss_pred CCCccEEEEeecCCCCC-----------HHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCc
Q psy13227 162 NDDTTAIRISNLSVNTS-----------ENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGY 230 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~t-----------e~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~ 230 (247)
...+.+|+|.||..... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|++|+..|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34567999999954432 5799999999999999965 554 37999999999999999999999999
Q ss_pred eeCCeEEEEeecCCCC
Q psy13227 231 GYDHLILSVDWSKSTN 246 (247)
Q Consensus 231 ~i~g~~L~V~~akp~~ 246 (247)
.++|+.|.|.|+.++.
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 9999999999998864
No 187
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.56 E-value=1.5e-15 Score=123.60 Aligned_cols=83 Identities=20% Similarity=0.288 Sum_probs=73.3
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
...+.++|||+|||.++++++|+++|..||.+.. .++.+..+|.++|||||+|.+.++|..|++ |||..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 3456789999999999999999999999998766 344444688999999999999999999995 99999999999999
Q ss_pred ecCCC
Q psy13227 241 WSKST 245 (247)
Q Consensus 241 ~akp~ 245 (247)
|+.++
T Consensus 87 ~~~~~ 91 (175)
T 1fje_B 87 KPKGR 91 (175)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 99875
No 188
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.55 E-value=6.6e-14 Score=122.52 Aligned_cols=77 Identities=22% Similarity=0.349 Sum_probs=72.0
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeC-CeEEEEee
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYD-HLILSVDW 241 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~-g~~L~V~~ 241 (247)
...++|||+|||.++++++|+++|++||.|.++.++.++ +|||||+|.+.++|.+|+..|||..++ |+.|+|.|
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 456889999999999999999999999999999998764 689999999999999999999999999 99999999
Q ss_pred cCC
Q psy13227 242 SKS 244 (247)
Q Consensus 242 akp 244 (247)
++.
T Consensus 280 akk 282 (282)
T 3pgw_A 280 AKK 282 (282)
T ss_pred ecC
Confidence 973
No 189
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.55 E-value=1.6e-14 Score=123.62 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=74.0
Q ss_pred CCCccEEEEeecCC-CCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 162 NDDTTAIRISNLSV-NTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 162 ~~~~~tl~V~nLp~-~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
..+.++|||+|||+ ++++++|+++|+.||.|..|.+++++ +|||||+|.+.++|+.|++.|||..+.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 35668999999999 99999999999999999999999885 7899999999999999999999999999999999
Q ss_pred ecCCC
Q psy13227 241 WSKST 245 (247)
Q Consensus 241 ~akp~ 245 (247)
|+++.
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 99864
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.52 E-value=1.3e-14 Score=120.59 Aligned_cols=76 Identities=21% Similarity=0.260 Sum_probs=72.0
Q ss_pred ccEEEEeecCC-CCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecC
Q psy13227 165 TTAIRISNLSV-NTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243 (247)
Q Consensus 165 ~~tl~V~nLp~-~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ak 243 (247)
.++|||+|||+ ++++++|+++|+.||.|..|.+++++ +|||||+|.+.++|..|+..|||..++|+.|.|.|++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 47999999999 99999999999999999999998875 7899999999999999999999999999999999998
Q ss_pred CC
Q psy13227 244 ST 245 (247)
Q Consensus 244 p~ 245 (247)
+.
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 191
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.49 E-value=6.4e-14 Score=123.23 Aligned_cols=82 Identities=20% Similarity=0.330 Sum_probs=71.3
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccC-CeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFG-PTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG-~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
..++|||+|||+++++++|+++|+.|| .|..+.++.++ .|.++|||||+|.+.++|..|+..|||..++|+.|.|.|+
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 457999999999999999999999999 99999999987 4889999999999999999999999999999999999999
Q ss_pred CCCC
Q psy13227 243 KSTN 246 (247)
Q Consensus 243 kp~~ 246 (247)
.|+.
T Consensus 195 ~~~~ 198 (292)
T 2ghp_A 195 NPLE 198 (292)
T ss_dssp CCC-
T ss_pred CCCc
Confidence 8763
No 192
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.49 E-value=2e-14 Score=109.67 Aligned_cols=72 Identities=19% Similarity=0.353 Sum_probs=64.6
Q ss_pred EeecCCCCCHHHHHHHh------------hccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEE
Q psy13227 170 ISNLSVNTSENDLEDLV------------KQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLIL 237 (247)
Q Consensus 170 V~nLp~~~te~dL~~lF------------~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L 237 (247)
+.||+..+++++|+++| ++||.|.++.|+++. ++.++|||||.|.+.++|.+|+..|||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777777777777666 999999999999986 58999999999999999999999999999999999
Q ss_pred EEeec
Q psy13227 238 SVDWS 242 (247)
Q Consensus 238 ~V~~a 242 (247)
.|+|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99987
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.48 E-value=5.6e-14 Score=116.70 Aligned_cols=78 Identities=24% Similarity=0.325 Sum_probs=72.6
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccC-CeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeC-CeEEEEe
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFG-PTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYD-HLILSVD 240 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG-~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~-g~~L~V~ 240 (247)
...++|||+|||..+++++|+++|++|| .|..+.+..+. +|||||+|.+.++|..|+..|||..++ |+.|+|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4568999999999999999999999999 99999987642 789999999999999999999999999 9999999
Q ss_pred ecCCC
Q psy13227 241 WSKST 245 (247)
Q Consensus 241 ~akp~ 245 (247)
|++|+
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99985
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.48 E-value=1.8e-13 Score=119.48 Aligned_cols=77 Identities=22% Similarity=0.464 Sum_probs=71.8
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeec
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~a 242 (247)
.+.++|||+|||+++++++|+++|+.||.|..|.+.++ +|||||.|.+.++|..|+..|||..++|+.|.|.|+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 55689999999999999999999999999999998654 689999999999999999999999999999999999
Q ss_pred CCC
Q psy13227 243 KST 245 (247)
Q Consensus 243 kp~ 245 (247)
.+.
T Consensus 94 ~~~ 96 (261)
T 3sde_A 94 THG 96 (261)
T ss_dssp CCS
T ss_pred ccC
Confidence 864
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.47 E-value=1.4e-13 Score=117.85 Aligned_cols=78 Identities=24% Similarity=0.309 Sum_probs=72.2
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccC-CeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeC-CeEEEEe
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFG-PTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYD-HLILSVD 240 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG-~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~-g~~L~V~ 240 (247)
...++|||+|||..+++++|+++|++|| .|..+.++.+ .+|||||+|.+.++|.+|+..|||..++ |+.|+|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4468999999999999999999999999 9999998653 3689999999999999999999999999 9999999
Q ss_pred ecCCC
Q psy13227 241 WSKST 245 (247)
Q Consensus 241 ~akp~ 245 (247)
|++|+
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99985
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.47 E-value=2.6e-13 Score=118.39 Aligned_cols=81 Identities=27% Similarity=0.308 Sum_probs=73.7
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhc-CceeC---CeEEEE
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLN-GYGYD---HLILSV 239 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~Ln-G~~i~---g~~L~V 239 (247)
..++|||+|||..+++++|+++|+.||.|.++.++.+ .+|.++|||||+|.+.++|.+|+..|| |..+. ++.|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4568999999999999999999999999999999999 599999999999999999999999995 44554 899999
Q ss_pred eecCCC
Q psy13227 240 DWSKST 245 (247)
Q Consensus 240 ~~akp~ 245 (247)
.|+.+.
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998764
No 197
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.46 E-value=1.3e-13 Score=105.39 Aligned_cols=81 Identities=17% Similarity=0.286 Sum_probs=70.2
Q ss_pred CccEEEEeec--CCCCC--------HHHHHHHhhccCCeeEEEEeecCCC--CceeeEEEEEecCHHHHHHHHHHhcCce
Q psy13227 164 DTTAIRISNL--SVNTS--------ENDLEDLVKQFGPTSKMYLSRDKTN--GLCKGFAYIHFKNKADAAKAIQYLNGYG 231 (247)
Q Consensus 164 ~~~tl~V~nL--p~~~t--------e~dL~~lF~~fG~I~~i~l~~d~~t--g~skGfaFV~F~s~e~A~~Ai~~LnG~~ 231 (247)
.++.|.+.|+ +.... ++||+++|++||.|.++.|++++.+ +.++||+||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3468999998 33443 2689999999999999999998754 4689999999999999999999999999
Q ss_pred eCCeEEEEeecCC
Q psy13227 232 YDHLILSVDWSKS 244 (247)
Q Consensus 232 i~g~~L~V~~akp 244 (247)
++|+.|.|.|+.+
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999754
No 198
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.46 E-value=1.4e-13 Score=116.76 Aligned_cols=78 Identities=13% Similarity=0.287 Sum_probs=69.0
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCe--eEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCe----E
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPT--SKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHL----I 236 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I--~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~----~ 236 (247)
....+|||+|||+++++++|+++|++||.| .++.+..++ +.++|||||+|.+.++|..||..|||..++|. .
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 345789999999999999999999999999 899988875 55679999999999999999999999999887 4
Q ss_pred EEEeec
Q psy13227 237 LSVDWS 242 (247)
Q Consensus 237 L~V~~a 242 (247)
+.|.|+
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 666654
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.44 E-value=3e-13 Score=109.18 Aligned_cols=75 Identities=16% Similarity=0.371 Sum_probs=67.2
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhcc----C-------CeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCcee
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQF----G-------PTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGY 232 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~f----G-------~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i 232 (247)
+.++|||+|||.++++++|+++|++| | .|.++.+. .++|||||+|.+.++|+.|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 35799999999999999999999999 6 67777664 34799999999999999999 7999999
Q ss_pred CCeEEEEeecCCC
Q psy13227 233 DHLILSVDWSKST 245 (247)
Q Consensus 233 ~g~~L~V~~akp~ 245 (247)
+|+.|.|.++.+.
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999998764
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.43 E-value=2.5e-13 Score=112.04 Aligned_cols=74 Identities=16% Similarity=0.372 Sum_probs=66.1
Q ss_pred ccEEEEeecCCCCCHHHHHHHhhcc----C-------CeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeC
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVKQF----G-------PTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYD 233 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~~f----G-------~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~ 233 (247)
.++|||+|||+++++++|+++|+.| | .|..+.+ +.++|||||+|.+.++|+.|+ .|||..++
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 4799999999999999999999999 5 5666554 455899999999999999999 79999999
Q ss_pred CeEEEEeecCCC
Q psy13227 234 HLILSVDWSKST 245 (247)
Q Consensus 234 g~~L~V~~akp~ 245 (247)
|+.|.|.|+.+.
T Consensus 77 g~~i~v~~~~~~ 88 (198)
T 2yh0_A 77 GQSLKIRRPHDY 88 (198)
T ss_dssp TEEEEEECCCCC
T ss_pred CceEEEeCCCCC
Confidence 999999998764
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.43 E-value=6.3e-13 Score=103.86 Aligned_cols=80 Identities=18% Similarity=0.299 Sum_probs=70.6
Q ss_pred CccEEEEeecC--CCC---CHHHHHHHhhccCCeeEEEEeecCC----CCceeeEEEEEecCHHHHHHHHHHhcCceeCC
Q psy13227 164 DTTAIRISNLS--VNT---SENDLEDLVKQFGPTSKMYLSRDKT----NGLCKGFAYIHFKNKADAAKAIQYLNGYGYDH 234 (247)
Q Consensus 164 ~~~tl~V~nLp--~~~---te~dL~~lF~~fG~I~~i~l~~d~~----tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g 234 (247)
.+++|++.|+- .++ -++||++.|++||.|.+|.|++++. ++.++||+||+|.+.++|.+|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 56799999983 222 3589999999999999999999864 46789999999999999999999999999999
Q ss_pred eEEEEeecC
Q psy13227 235 LILSVDWSK 243 (247)
Q Consensus 235 ~~L~V~~ak 243 (247)
+.|.|.|+.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999875
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.4e-12 Score=99.14 Aligned_cols=75 Identities=21% Similarity=0.270 Sum_probs=63.5
Q ss_pred ccEEEEeecC-------CCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEE
Q psy13227 165 TTAIRISNLS-------VNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLIL 237 (247)
Q Consensus 165 ~~tl~V~nLp-------~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L 237 (247)
...|.|.-.. ..+++++|+++|++||.|..|.|+ +.++|||||+|.+.++|+.|++.++ .+.++.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeE
Confidence 3456665433 568999999999999999999987 3679999999999999999999744 4789999
Q ss_pred EEeecCCCC
Q psy13227 238 SVDWSKSTN 246 (247)
Q Consensus 238 ~V~~akp~~ 246 (247)
+|.|+++++
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999999875
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.29 E-value=5.7e-12 Score=115.27 Aligned_cols=75 Identities=17% Similarity=0.322 Sum_probs=65.0
Q ss_pred CCccEEEEee--cCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeC---Ce--
Q psy13227 163 DDTTAIRISN--LSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYD---HL-- 235 (247)
Q Consensus 163 ~~~~tl~V~n--Lp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~---g~-- 235 (247)
..+.+|||+| |+..+++++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++.|||..+. |+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 4567999999 689999999999999999999987753 4799999999999999999999999873 34
Q ss_pred EEEEeecC
Q psy13227 236 ILSVDWSK 243 (247)
Q Consensus 236 ~L~V~~ak 243 (247)
.|.|.|+.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 57888774
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.23 E-value=1.7e-11 Score=95.18 Aligned_cols=75 Identities=17% Similarity=0.349 Sum_probs=63.7
Q ss_pred ccEEEEeecCCCC----------CHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCC
Q psy13227 165 TTAIRISNLSVNT----------SENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDH 234 (247)
Q Consensus 165 ~~tl~V~nLp~~~----------te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g 234 (247)
++.|.+.|+=..- -++||++.|++||.|.+|.|.++. ++||+||.|.+.++|.+|+..|||..++|
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4578888873211 125789999999999999997663 48999999999999999999999999999
Q ss_pred eEEEEeecC
Q psy13227 235 LILSVDWSK 243 (247)
Q Consensus 235 ~~L~V~~ak 243 (247)
+.|.|.|+.
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999999985
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=7.7e-10 Score=82.41 Aligned_cols=71 Identities=18% Similarity=0.283 Sum_probs=62.1
Q ss_pred cEEEEeecCC----CCCH----HHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEE
Q psy13227 166 TAIRISNLSV----NTSE----NDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLIL 237 (247)
Q Consensus 166 ~tl~V~nLp~----~~te----~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L 237 (247)
.||.|..++. ++-. .+|.+.|++||.|..++++.++ +||+|.+.++|.+||+ |||..++|+.|
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 5888988772 3333 5788999999999999998874 8999999999999999 99999999999
Q ss_pred EEeecCCC
Q psy13227 238 SVDWSKST 245 (247)
Q Consensus 238 ~V~~akp~ 245 (247)
+|++++|.
T Consensus 79 kV~lkt~d 86 (91)
T 2dnr_A 79 TIALKSPS 86 (91)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 99999874
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=2.2e-09 Score=84.20 Aligned_cols=75 Identities=16% Similarity=0.108 Sum_probs=66.0
Q ss_pred CCCccEEEEeecCCC-CCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecC-HHHHHHHHHHhc--CceeCCeEE
Q psy13227 162 NDDTTAIRISNLSVN-TSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKN-KADAAKAIQYLN--GYGYDHLIL 237 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~-~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s-~e~A~~Ai~~Ln--G~~i~g~~L 237 (247)
-...+.|||+||+++ +++++|+++|+.||.|..|.+.++.. .|||.|.+ ..+|..|+..|| +..|.+..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 356689999999999 99999999999999999999988864 59999999 899999999995 677888887
Q ss_pred EEeec
Q psy13227 238 SVDWS 242 (247)
Q Consensus 238 ~V~~a 242 (247)
.++..
T Consensus 89 ~~evL 93 (121)
T 1owx_A 89 TWEVL 93 (121)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 77653
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.94 E-value=2.3e-09 Score=91.01 Aligned_cols=66 Identities=18% Similarity=0.284 Sum_probs=59.9
Q ss_pred CHHHHHHHhhccCCeeEEEEeecC----CCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEeecC
Q psy13227 178 SENDLEDLVKQFGPTSKMYLSRDK----TNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243 (247)
Q Consensus 178 te~dL~~lF~~fG~I~~i~l~~d~----~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~~ak 243 (247)
.+++|++.|++||.|.++.|.++. .++.++|++||+|.+.++|.+|+..|||..++|+.|.+.++.
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 457899999999999999998554 456999999999999999999999999999999999999874
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=1.1e-08 Score=76.60 Aligned_cols=71 Identities=11% Similarity=0.232 Sum_probs=61.2
Q ss_pred ccEEEEeecCCC------CCH---HHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCe
Q psy13227 165 TTAIRISNLSVN------TSE---NDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHL 235 (247)
Q Consensus 165 ~~tl~V~nLp~~------~te---~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~ 235 (247)
..||.|..++.. .++ .+|.+.|..||.|..++++.++ +||+|.+.++|.+||+ |||..++|+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 368999988743 232 4688999999999999999884 9999999999999999 999999999
Q ss_pred EEEEeecCC
Q psy13227 236 ILSVDWSKS 244 (247)
Q Consensus 236 ~L~V~~akp 244 (247)
.|+|.+-.|
T Consensus 86 ~L~V~~k~~ 94 (95)
T 1ufw_A 86 AVKISGPSS 94 (95)
T ss_dssp EEEEECCCC
T ss_pred EEEEeccCC
Confidence 999998654
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.43 E-value=1.2e-06 Score=67.30 Aligned_cols=73 Identities=23% Similarity=0.223 Sum_probs=67.2
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhcc-----CCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeE
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQF-----GPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLI 236 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~f-----G~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~ 236 (247)
.++.++|-+-|||+.++...|+.|+.++ |.|..|.+..|. +-|+|+|.+...|.+|.-.|||..|+|++
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3456789999999999999999999999 999999998884 47999999999999999999999999999
Q ss_pred EEEe
Q psy13227 237 LSVD 240 (247)
Q Consensus 237 L~V~ 240 (247)
|++-
T Consensus 92 Lr~g 95 (117)
T 2l9w_A 92 IRSG 95 (117)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9985
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.51 E-value=0.00031 Score=53.25 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=62.8
Q ss_pred CccEEEEeecCCCC-CH----HHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEE
Q psy13227 164 DTTAIRISNLSVNT-SE----NDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILS 238 (247)
Q Consensus 164 ~~~tl~V~nLp~~~-te----~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~ 238 (247)
-.++|+|+||+.++ .. +.++++|..|+++......+.- .-..|.|.+.++|.+|-..|++..++|..|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 34789999998866 33 4568999999998887766552 1457999999999999999999999999999
Q ss_pred EeecCCC
Q psy13227 239 VDWSKST 245 (247)
Q Consensus 239 V~~akp~ 245 (247)
|-|+++.
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9998754
No 211
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.38 E-value=0.00089 Score=50.15 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=47.0
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhc
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLN 228 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~Ln 228 (247)
..++| ++|..+...||.++|+.||.|. |.++-|. .|||.|.+++.|..|+..++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34555 9999999999999999999654 8888885 89999999999999999764
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.09 E-value=0.0038 Score=46.10 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=61.1
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCc--eeeEEEEEecCHHHHHHHHHHhcCceeCC-----eEEE
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGL--CKGFAYIHFKNKADAAKAIQYLNGYGYDH-----LILS 238 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~--skGfaFV~F~s~e~A~~Ai~~LnG~~i~g-----~~L~ 238 (247)
+.|-|.+||+.++|+++.+.++....+...+.+..+.+.. .-.-|||.|.+.+++..-.+.++|+.+-+ ....
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5789999999999999999999998877666655543322 23679999999999999999999998642 1235
Q ss_pred EeecC
Q psy13227 239 VDWSK 243 (247)
Q Consensus 239 V~~ak 243 (247)
|++|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66653
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.02 E-value=0.0033 Score=48.73 Aligned_cols=72 Identities=18% Similarity=0.251 Sum_probs=58.2
Q ss_pred CCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCC-eEEEEe
Q psy13227 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDH-LILSVD 240 (247)
Q Consensus 162 ~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g-~~L~V~ 240 (247)
..+.+.|.|.++|+.. -..+...|++||.|.+..... ...+-.|.|.++.+|++||. .||..+++ ..|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 3456789999999885 566778899999999887621 23599999999999999999 69999984 667776
Q ss_pred e
Q psy13227 241 W 241 (247)
Q Consensus 241 ~ 241 (247)
+
T Consensus 93 p 93 (119)
T 1wwh_A 93 P 93 (119)
T ss_dssp E
T ss_pred E
Confidence 5
No 214
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.91 E-value=0.0073 Score=45.58 Aligned_cols=72 Identities=15% Similarity=0.119 Sum_probs=57.5
Q ss_pred ccEEEEeecCCCCCHHHHHHHhhc-----cCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEE
Q psy13227 165 TTAIRISNLSVNTSENDLEDLVKQ-----FGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSV 239 (247)
Q Consensus 165 ~~tl~V~nLp~~~te~dL~~lF~~-----fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V 239 (247)
..+|.|.|||+.++++.|.-+|.. -|.|..+.... +-|+|+|.+...|++.++. .-+.+++..|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence 468999999999999999999976 25677776533 4789999999999999882 377888888888
Q ss_pred eecCCC
Q psy13227 240 DWSKST 245 (247)
Q Consensus 240 ~~akp~ 245 (247)
.-..++
T Consensus 79 ~P~~~~ 84 (104)
T 2dhx_A 79 RPAPPR 84 (104)
T ss_dssp EECCCC
T ss_pred EcCCCC
Confidence 655544
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.88 E-value=0.0017 Score=48.68 Aligned_cols=53 Identities=15% Similarity=0.274 Sum_probs=46.3
Q ss_pred EEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhc
Q psy13227 167 AIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLN 228 (247)
Q Consensus 167 tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~Ln 228 (247)
.++| ++|..+...||.++|++||. ..|.++-|. .|||.|.+++.|..|+..++
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4555 99999999999999999994 458888885 89999999999999999775
No 216
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.61 E-value=0.014 Score=45.90 Aligned_cols=35 Identities=17% Similarity=0.048 Sum_probs=29.2
Q ss_pred EEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCc
Q psy13227 194 KMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGY 230 (247)
Q Consensus 194 ~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~ 230 (247)
.+.|+++. ..++|||||+|.+.++|++|+..+++.
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 35677774 468999999999999999999988753
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.56 E-value=0.016 Score=45.57 Aligned_cols=79 Identities=19% Similarity=0.228 Sum_probs=55.7
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEE-Eeec------------CCCC-ceeeEEEEEecCHHHHHHHHHHhc
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMY-LSRD------------KTNG-LCKGFAYIHFKNKADAAKAIQYLN 228 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~-l~~d------------~~tg-~skGfaFV~F~s~e~A~~Ai~~Ln 228 (247)
...+.|.|-++|++.. ..+.+.|++||.|..-+ +.++ +.-+ ....+-.|.|.+..+|.+||. .|
T Consensus 5 ~~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N 82 (132)
T 3p3d_A 5 NGELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN 82 (132)
T ss_dssp ---CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT
T ss_pred cCceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC
Confidence 3446788889977654 55667899999987622 1110 0001 134688999999999999999 69
Q ss_pred CceeCCeEEEEeecC
Q psy13227 229 GYGYDHLILSVDWSK 243 (247)
Q Consensus 229 G~~i~g~~L~V~~ak 243 (247)
|..++|..|-|.+..
T Consensus 83 G~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYT 97 (132)
T ss_dssp TCEETTEECEEEECC
T ss_pred CeEeCcEEEEEEECC
Confidence 999999988887654
No 218
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.44 E-value=0.011 Score=46.33 Aligned_cols=41 Identities=22% Similarity=0.138 Sum_probs=37.8
Q ss_pred CCceeeEEEEEecCHHHHHHHHHHh-cCceeCCeEEEEeecCC
Q psy13227 203 NGLCKGFAYIHFKNKADAAKAIQYL-NGYGYDHLILSVDWSKS 244 (247)
Q Consensus 203 tg~skGfaFV~F~s~e~A~~Ai~~L-nG~~i~g~~L~V~~akp 244 (247)
....+|+++|+|.+.++|++|+..| ||..++| .+.++++.+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 4567899999999999999999999 9999999 999999875
No 219
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.87 E-value=0.043 Score=40.87 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=56.6
Q ss_pred CccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCC--ceeeEEEEEecCHHHHHHHHHHhcCceeCCe-----E
Q psy13227 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNG--LCKGFAYIHFKNKADAAKAIQYLNGYGYDHL-----I 236 (247)
Q Consensus 164 ~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg--~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~-----~ 236 (247)
.+-.|-|..||+.++|+++.+.++.+-.+...+.+....+. ..-.-|||.|.+.++...-.+.++|+.+-+. .
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 34579999999999999999888876554333332222221 1225689999999999999999999986432 3
Q ss_pred EEEeecC
Q psy13227 237 LSVDWSK 243 (247)
Q Consensus 237 L~V~~ak 243 (247)
-.|++|-
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 4566653
No 220
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.54 E-value=0.027 Score=53.08 Aligned_cols=59 Identities=22% Similarity=0.367 Sum_probs=43.7
Q ss_pred CCCCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHH
Q psy13227 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225 (247)
Q Consensus 161 ~~~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~ 225 (247)
+....++|+|. .+..+++.+|.+.|++||+|.++.+-.+. | -||.|+|.+.+++..++.
T Consensus 49 ~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 49 REQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred HHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 34555799997 79999999999999999999999886653 3 599999999998887654
No 221
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=91.19 E-value=0.063 Score=33.46 Aligned_cols=21 Identities=33% Similarity=0.760 Sum_probs=18.0
Q ss_pred eeeeeeccC-CccccCCCCccc
Q psy13227 77 FISCRTCKG-AHFTNNCPFKDS 97 (247)
Q Consensus 77 ~~~Cr~C~g-~h~t~~CP~k~~ 97 (247)
.++|++|+. +||...||-+..
T Consensus 10 ~~~C~~Cgk~GH~ardCP~~~~ 31 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPKKPR 31 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSSSCC
T ss_pred CCeeeECCCCCcchhhCcCCcc
Confidence 578999954 999999998765
No 222
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.26 E-value=1.6 Score=41.22 Aligned_cols=55 Identities=15% Similarity=0.253 Sum_probs=45.7
Q ss_pred cEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcC
Q psy13227 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229 (247)
Q Consensus 166 ~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG 229 (247)
..++|+ ++..+...+|.++|+.||.+ .|.++.+. .|||.|.+.+.|..++..++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHHh
Confidence 456665 99999999999999999954 57766654 799999999999999998854
No 223
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=87.17 E-value=0.19 Score=33.62 Aligned_cols=21 Identities=33% Similarity=0.760 Sum_probs=18.0
Q ss_pred eeeeeeccC-CccccCCCCccc
Q psy13227 77 FISCRTCKG-AHFTNNCPFKDS 97 (247)
Q Consensus 77 ~~~Cr~C~g-~h~t~~CP~k~~ 97 (247)
..+|++|+. +||...||-+..
T Consensus 23 ~~~C~~Cge~GH~ardCp~~~~ 44 (56)
T 1u6p_A 23 RDQCAYCKEKGHWAKDCPKKPR 44 (56)
T ss_dssp TTBCSSSCCBSSCGGGCTTCCC
T ss_pred CCcceeCCCCCcccccCcCCcc
Confidence 578999965 999999998755
No 224
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=68.06 E-value=1.4 Score=24.37 Aligned_cols=18 Identities=22% Similarity=0.626 Sum_probs=14.9
Q ss_pred eeeeecc-CCccccCCCCc
Q psy13227 78 ISCRTCK-GAHFTNNCPFK 95 (247)
Q Consensus 78 ~~Cr~C~-g~h~t~~CP~k 95 (247)
+.|..|+ ..||...||-.
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 5799994 59999999954
No 225
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=66.08 E-value=12 Score=25.28 Aligned_cols=68 Identities=7% Similarity=0.137 Sum_probs=42.4
Q ss_pred EEEEee-cCCCCCHHHHHHHhhccCC-----eeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcCceeCCeEEEEe
Q psy13227 167 AIRISN-LSVNTSENDLEDLVKQFGP-----TSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240 (247)
Q Consensus 167 tl~V~n-Lp~~~te~dL~~lF~~fG~-----I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG~~i~g~~L~V~ 240 (247)
+|||.. --..+...+|..++..-+. |-.|.+..+ |.||+... ..+..++..|++..+.|+.+.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 455532 1344677788877775543 455666332 88888874 56888999999999999999988
Q ss_pred ecC
Q psy13227 241 WSK 243 (247)
Q Consensus 241 ~ak 243 (247)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 765
No 226
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=65.90 E-value=1.6 Score=24.71 Aligned_cols=18 Identities=33% Similarity=0.774 Sum_probs=15.2
Q ss_pred eeeeeec-cCCccccCCCC
Q psy13227 77 FISCRTC-KGAHFTNNCPF 94 (247)
Q Consensus 77 ~~~Cr~C-~g~h~t~~CP~ 94 (247)
.++|..| +..||..+||-
T Consensus 6 ~~~C~nCgk~GH~ar~C~~ 24 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRA 24 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCS
T ss_pred CCEEEECCccccCHhHCcc
Confidence 5789999 45899999983
No 227
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.13 E-value=5.5 Score=26.23 Aligned_cols=19 Identities=37% Similarity=0.878 Sum_probs=15.2
Q ss_pred eeeeeec-cCCccccCCCCc
Q psy13227 77 FISCRTC-KGAHFTNNCPFK 95 (247)
Q Consensus 77 ~~~Cr~C-~g~h~t~~CP~k 95 (247)
...|-.| +-.||..+||.+
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSGG
T ss_pred CCccccCCCcCcccccCCCC
Confidence 3579999 458999999954
No 228
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=44.67 E-value=6 Score=23.67 Aligned_cols=17 Identities=24% Similarity=0.645 Sum_probs=13.9
Q ss_pred eeeeecc-CCccccCCCC
Q psy13227 78 ISCRTCK-GAHFTNNCPF 94 (247)
Q Consensus 78 ~~Cr~C~-g~h~t~~CP~ 94 (247)
|.|..|. ..|+...||.
T Consensus 1 i~C~~Cg~~GH~a~~C~~ 18 (39)
T 2a51_A 1 LTCFNCGKPGHTARMCRQ 18 (39)
T ss_dssp CBCTTTCCBSSCTTTCCS
T ss_pred CeeeccCCCCcccccCCC
Confidence 5788995 4899999995
No 229
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=44.39 E-value=5.9 Score=22.07 Aligned_cols=17 Identities=29% Similarity=0.788 Sum_probs=13.4
Q ss_pred eeeeccC-CccccCCCCc
Q psy13227 79 SCRTCKG-AHFTNNCPFK 95 (247)
Q Consensus 79 ~Cr~C~g-~h~t~~CP~k 95 (247)
-|-+|.- .|||..|+--
T Consensus 5 YCe~CE~FGH~t~~C~d~ 22 (26)
T 2hqh_E 5 YCEICEMFGHWATNCNDD 22 (26)
T ss_dssp EETTTTEESSCGGGCCTT
T ss_pred cchHHHHhCcccccCCcc
Confidence 5888954 8999999743
No 230
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=36.73 E-value=11 Score=22.10 Aligned_cols=16 Identities=25% Similarity=0.841 Sum_probs=12.6
Q ss_pred eeeecc-CCccccCCCC
Q psy13227 79 SCRTCK-GAHFTNNCPF 94 (247)
Q Consensus 79 ~Cr~C~-g~h~t~~CP~ 94 (247)
.|..|. .+|+...||.
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 588884 4899999985
No 231
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=36.40 E-value=9.3 Score=27.16 Aligned_cols=18 Identities=33% Similarity=0.842 Sum_probs=14.1
Q ss_pred eeeeeeccC-CccccCCCC
Q psy13227 77 FISCRTCKG-AHFTNNCPF 94 (247)
Q Consensus 77 ~~~Cr~C~g-~h~t~~CP~ 94 (247)
.+.|..|+. .|+...||-
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~ 23 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPS 23 (83)
T ss_dssp --CCSSSCCSSSCGGGCGG
T ss_pred cCCCCCCCCCCCccccCCC
Confidence 578999954 899999994
No 232
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=32.19 E-value=13 Score=24.52 Aligned_cols=20 Identities=30% Similarity=0.745 Sum_probs=16.2
Q ss_pred eeeeeeccC-CccccCCCCcc
Q psy13227 77 FISCRTCKG-AHFTNNCPFKD 96 (247)
Q Consensus 77 ~~~Cr~C~g-~h~t~~CP~k~ 96 (247)
.+.|..|+. .||...||-+.
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 30 RERCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp CSBCTTTCCBSSCGGGCCCCC
T ss_pred CCeeCCCCCCCCCcCCCcCCC
Confidence 368999954 89999999654
No 233
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=31.26 E-value=16 Score=22.97 Aligned_cols=18 Identities=28% Similarity=0.781 Sum_probs=10.7
Q ss_pred eeeeecc-CCccccCCCCc
Q psy13227 78 ISCRTCK-GAHFTNNCPFK 95 (247)
Q Consensus 78 ~~Cr~C~-g~h~t~~CP~k 95 (247)
..|..|+ ..|+...||-+
T Consensus 28 ~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 28 QGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CSCSSSCCSSCCGGGCCSS
T ss_pred CeeCcCCCcCCccCCCcCC
Confidence 3566663 36666666644
No 234
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=30.86 E-value=16 Score=23.75 Aligned_cols=20 Identities=40% Similarity=0.785 Sum_probs=16.5
Q ss_pred eeeeeecc-CCccccCCCCcc
Q psy13227 77 FISCRTCK-GAHFTNNCPFKD 96 (247)
Q Consensus 77 ~~~Cr~C~-g~h~t~~CP~k~ 96 (247)
...|..|+ ..||...||-+.
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 30 PGLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp CCSCSSCSSCSSCSTTCCCTT
T ss_pred CcceeECCCCCCccCcCCCcc
Confidence 46899995 599999999664
No 235
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=30.06 E-value=15 Score=22.85 Aligned_cols=21 Identities=24% Similarity=0.613 Sum_probs=15.8
Q ss_pred eeeeeeccC-CccccCCCCccc
Q psy13227 77 FISCRTCKG-AHFTNNCPFKDS 97 (247)
Q Consensus 77 ~~~Cr~C~g-~h~t~~CP~k~~ 97 (247)
.--|-+|-= .|||..|+--.|
T Consensus 20 RpYCe~CEVFGH~t~eC~ddeT 41 (42)
T 3e2u_E 20 RPYCEICEMFGHWATNCNDDET 41 (42)
T ss_dssp CCEETTTTEESSCGGGCCTTCC
T ss_pred CcccccceecccccccCCcccc
Confidence 456889943 899999986543
No 236
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=28.98 E-value=16 Score=23.34 Aligned_cols=18 Identities=28% Similarity=0.743 Sum_probs=15.1
Q ss_pred eeeeeeccC-CccccCCCC
Q psy13227 77 FISCRTCKG-AHFTNNCPF 94 (247)
Q Consensus 77 ~~~Cr~C~g-~h~t~~CP~ 94 (247)
.+.|..|.. .||...||-
T Consensus 12 ~~~C~~Cg~~GH~a~~C~~ 30 (55)
T 1a1t_A 12 TVKCFNCGKEGHIAKNCRA 30 (55)
T ss_dssp TCBCTTTCCBSSCGGGCSS
T ss_pred CcceeeeCCCCcChhhcCC
Confidence 478999954 899999985
No 237
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=27.92 E-value=17 Score=22.52 Aligned_cols=19 Identities=26% Similarity=0.604 Sum_probs=14.4
Q ss_pred eeeeeeccC-CccccCCCCc
Q psy13227 77 FISCRTCKG-AHFTNNCPFK 95 (247)
Q Consensus 77 ~~~Cr~C~g-~h~t~~CP~k 95 (247)
.--|-+|.- .|||..|+--
T Consensus 20 RpYCd~CEvFGH~t~~Cndd 39 (42)
T 2pzo_E 20 RPYCEICEMFGHWATNCNDD 39 (42)
T ss_dssp -CEETTTTEESSCGGGCCTT
T ss_pred CcccccccccCcccccCCcc
Confidence 457999954 8999999743
No 238
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=23.25 E-value=2.2e+02 Score=22.84 Aligned_cols=56 Identities=18% Similarity=0.171 Sum_probs=36.6
Q ss_pred EEEEeecCC-C--------CCHHHHHHHh--hccCCeeEEEEeecCCCCceeeEEEEEecC-HHHHHHHHH
Q psy13227 167 AIRISNLSV-N--------TSENDLEDLV--KQFGPTSKMYLSRDKTNGLCKGFAYIHFKN-KADAAKAIQ 225 (247)
Q Consensus 167 tl~V~nLp~-~--------~te~dL~~lF--~~fG~I~~i~l~~d~~tg~skGfaFV~F~s-~e~A~~Ai~ 225 (247)
++.|-|++. . .+...|.+.| +.|.++. +..+.++ .-+.|++.|.|.+ -.....|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 455667665 1 3446888866 8998866 5555554 3478999999975 334444444
No 239
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=22.24 E-value=21 Score=26.64 Aligned_cols=18 Identities=39% Similarity=0.942 Sum_probs=15.7
Q ss_pred eeeeeeccC-CccccCCCC
Q psy13227 77 FISCRTCKG-AHFTNNCPF 94 (247)
Q Consensus 77 ~~~Cr~C~g-~h~t~~CP~ 94 (247)
.+.|..|.+ .||...||-
T Consensus 105 ~~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 105 TIYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp CCCTTTTSSSCTTTTTSCC
T ss_pred CCCcCCCCCCCcCcccCcC
Confidence 589999965 899999994
No 240
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.54 E-value=25 Score=23.27 Aligned_cols=20 Identities=30% Similarity=0.765 Sum_probs=14.8
Q ss_pred eeeeeecc-CCccccCCCCcc
Q psy13227 77 FISCRTCK-GAHFTNNCPFKD 96 (247)
Q Consensus 77 ~~~Cr~C~-g~h~t~~CP~k~ 96 (247)
.+.|.+|+ ..|+...||-+.
T Consensus 29 ~~~C~~Cg~~GH~ar~Cp~~~ 49 (63)
T 2cqf_A 29 PKKCHFCQSISHMVASCPLKA 49 (63)
T ss_dssp SSCCTTTCCSSSCTTTCTGGG
T ss_pred CCccCCcCCcCCccCcCCCcc
Confidence 35788884 489999998553
No 241
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=21.53 E-value=2.4e+02 Score=20.46 Aligned_cols=59 Identities=25% Similarity=0.271 Sum_probs=45.1
Q ss_pred CCccEEEEeecCCCCCHHHHHHHhhccCCeeEEEEeecCCCCceeeEEEEEecCHHHHHHHHHHhcC
Q psy13227 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229 (247)
Q Consensus 163 ~~~~tl~V~nLp~~~te~dL~~lF~~fG~I~~i~l~~d~~tg~skGfaFV~F~s~e~A~~Ai~~LnG 229 (247)
...+-|.|-|+|..+-..++.-.....|---.+..+ -|-|.|.|.+.++..-|+..|-.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHh
Confidence 456889999999999888887666777755455443 24689999999999999987643
No 242
>1qtx_B Protein (RS20); calmodulin, calcium binding, helix-loop-helix, signaling, complex (calcium- binding protein/peptide), signaling protein; 1.65A {Escherichia coli} PDB: 1qs7_B* 1vrk_B*
Probab=21.19 E-value=9.4 Score=21.12 Aligned_cols=10 Identities=30% Similarity=0.557 Sum_probs=6.3
Q ss_pred hcCCcccccc
Q psy13227 26 RKHLAKYGKS 35 (247)
Q Consensus 26 Rk~w~kfg~~ 35 (247)
||+|.|=|.+
T Consensus 1 rrkWqKtgna 10 (26)
T 1qtx_B 1 RRKWQKTGHA 10 (26)
T ss_pred CchHHHHhHH
Confidence 5677776643
No 243
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=20.73 E-value=27 Score=27.30 Aligned_cols=16 Identities=31% Similarity=0.874 Sum_probs=0.0
Q ss_pred eeeeeccC-CccccCCC
Q psy13227 78 ISCRTCKG-AHFTNNCP 93 (247)
Q Consensus 78 ~~Cr~C~g-~h~t~~CP 93 (247)
+.|..|.. .|+...||
T Consensus 98 ~~C~~Cg~~GH~a~~C~ 114 (148)
T 3ts2_A 98 DRCYNCGGLDHHAKECK 114 (148)
T ss_dssp CCCTTTCCSSCCGGGCC
T ss_pred CcccEeCCccchhhhCC
Done!