Your job contains 1 sequence.
>psy13227
MLVESTKVVRTLKVEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQFISN
KEEVEKPEEENLEKLKFISCRTCKGAHFTNNCPFKDSALFLADANKKPFNTVPGTNIMAA
SSDDKKSGGPGGAPGGPAIYVPPSLREGPGGKRVEGYNARRNDDTTAIRISNLSVNTSEN
DLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD
WSKSTNQ
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13227
(247 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0029629 - symbol:CG8636 species:7227 "Drosophila m... 342 4.2e-51 2
FB|FBgn0038796 - symbol:CG10881 species:7227 "Drosophila ... 498 1.2e-47 1
ZFIN|ZDB-GENE-040426-1076 - symbol:eif3g "eukaryotic tran... 290 2.2e-42 2
UNIPROTKB|Q6DJI8 - symbol:eif3g-a "Eukaryotic translation... 297 3.6e-42 2
UNIPROTKB|Q28CY2 - symbol:eif3g "Eukaryotic translation i... 297 5.9e-42 2
UNIPROTKB|Q641B2 - symbol:eif3g-b "Eukaryotic translation... 297 7.5e-42 2
UNIPROTKB|F2Z4J5 - symbol:EIF3G "Eukaryotic translation i... 291 7.5e-42 2
UNIPROTKB|Q3ZC12 - symbol:EIF3G "Eukaryotic translation i... 291 7.5e-42 2
UNIPROTKB|E2RGG6 - symbol:EIF3G "Eukaryotic translation i... 291 7.5e-42 2
UNIPROTKB|O75821 - symbol:EIF3G "Eukaryotic translation i... 291 7.5e-42 2
UNIPROTKB|F1S3I3 - symbol:EIF3G "Eukaryotic translation i... 291 7.5e-42 2
MGI|MGI:1858258 - symbol:Eif3g "eukaryotic translation in... 291 7.5e-42 2
RGD|1307191 - symbol:Eif3g "eukaryotic translation initia... 291 7.5e-42 2
UNIPROTKB|Q5RK09 - symbol:Eif3g "Eukaryotic translation i... 291 7.5e-42 2
UNIPROTKB|K7ENA8 - symbol:EIF3G "Eukaryotic translation i... 215 7.1e-34 2
UNIPROTKB|A4RHN3 - symbol:TIF35 "Eukaryotic translation i... 318 1.5e-28 1
TAIR|locus:2080772 - symbol:EIF3G1 "eukaryotic translatio... 271 1.4e-27 2
ASPGD|ASPL0000001581 - symbol:AN10765 species:162425 "Eme... 297 2.5e-26 1
POMBASE|SPBC18H10.03 - symbol:tif35 "translation initiati... 295 4.0e-26 1
WB|WBGene00001230 - symbol:eif-3.G species:6239 "Caenorha... 186 1.0e-25 2
CGD|CAL0003839 - symbol:TIF35 species:5476 "Candida albic... 278 2.6e-24 1
SGD|S000002837 - symbol:TIF35 "eIF3g subunit of the eukar... 274 6.8e-24 1
TAIR|locus:2153659 - symbol:EIF3G2 "eukaryotic translatio... 270 1.8e-23 1
UNIPROTKB|K7EL20 - symbol:EIF3G "Eukaryotic translation i... 166 2.2e-22 2
DICTYBASE|DDB_G0279549 - symbol:eif3G "eukaryotic transla... 190 2.3e-22 2
UNIPROTKB|K7EP16 - symbol:EIF3G "Eukaryotic translation i... 236 7.2e-20 1
GENEDB_PFALCIPARUM|MAL8P1.83 - symbol:MAL8P1.83 "eukaryot... 176 1.6e-13 1
UNIPROTKB|Q8IAZ3 - symbol:MAL8P1.83 "Eukaryotic translati... 176 1.6e-13 1
UNIPROTKB|K7ER90 - symbol:EIF3G "Eukaryotic translation i... 114 1.7e-13 3
UNIPROTKB|E1C875 - symbol:TRA2A "Uncharacterized protein"... 130 6.3e-08 1
UNIPROTKB|Q3ZBJ1 - symbol:NCBP2 "Nuclear cap-binding prot... 124 6.7e-08 1
UNIPROTKB|E2RFC9 - symbol:NCBP2 "Uncharacterized protein"... 124 6.7e-08 1
UNIPROTKB|P52298 - symbol:NCBP2 "Nuclear cap-binding prot... 124 6.7e-08 1
UNIPROTKB|F2Z5Q9 - symbol:NCBP2 "Uncharacterized protein"... 124 6.7e-08 1
MGI|MGI:1915342 - symbol:Ncbp2 "nuclear cap binding prote... 124 6.7e-08 1
RGD|1596188 - symbol:Ncbp2 "nuclear cap binding protein s... 124 6.7e-08 1
UNIPROTKB|B4DQI6 - symbol:TRA2A "cDNA FLJ50614, highly si... 129 8.5e-08 1
UNIPROTKB|B4DUA9 - symbol:TRA2A "Transformer-2 protein ho... 129 1.0e-07 1
UNIPROTKB|E2RBE5 - symbol:NCBP2L "Uncharacterized protein... 121 1.5e-07 1
UNIPROTKB|C1BY64 - symbol:ncbp2 "Nuclear cap-binding prot... 121 1.5e-07 1
UNIPROTKB|P52299 - symbol:ncbp2 "Nuclear cap-binding prot... 121 1.5e-07 1
UNIPROTKB|Q6DES0 - symbol:ncbp2 "Nuclear cap-binding prot... 119 2.7e-07 1
ASPGD|ASPL0000076347 - symbol:AN4505 species:162425 "Emer... 118 3.5e-07 1
UNIPROTKB|F1NIR6 - symbol:NCBP2 "Nuclear cap-binding prot... 118 3.5e-07 1
ZFIN|ZDB-GENE-020419-31 - symbol:ncbp2 "nuclear cap bindi... 118 3.5e-07 1
UNIPROTKB|F1NPM7 - symbol:TRA2A "Uncharacterized protein"... 133 5.1e-07 1
UNIPROTKB|E2R4B2 - symbol:TRA2A "Uncharacterized protein"... 132 7.2e-07 1
UNIPROTKB|Q06AA6 - symbol:TRA2A "Uncharacterized protein"... 132 7.3e-07 1
UNIPROTKB|Q2KJ71 - symbol:TRA2A "Transformer 2 alpha homo... 132 7.4e-07 1
MGI|MGI:1933972 - symbol:Tra2a "transformer 2 alpha homol... 132 7.4e-07 1
UNIPROTKB|Q13595 - symbol:TRA2A "Transformer-2 protein ho... 132 7.5e-07 1
RGD|1562563 - symbol:Tra2a "transformer 2 alpha homolog (... 132 7.5e-07 1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 115 7.9e-07 1
UNIPROTKB|C0H859 - symbol:ncbp2 "Nuclear cap-binding prot... 115 7.9e-07 1
DICTYBASE|DDB_G0286007 - symbol:rbm8A "RNA-binding motif ... 125 8.8e-07 1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 114 1.0e-06 1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 114 1.0e-06 1
TAIR|locus:2206850 - symbol:AT1G73530 species:3702 "Arabi... 123 1.3e-06 1
UNIPROTKB|E2R228 - symbol:E2R228 "Uncharacterized protein... 113 1.3e-06 1
UNIPROTKB|B5G279 - symbol:NCBP2 "Nuclear cap-binding prot... 119 1.6e-06 1
TAIR|locus:2831834 - symbol:AT5G03580 species:3702 "Arabi... 89 2.2e-06 2
GENEDB_PFALCIPARUM|PF14_0057 - symbol:PF14_0057 "RNA bind... 111 2.3e-06 1
UNIPROTKB|J3KP15 - symbol:SRSF2 "Serine/arginine-rich-spl... 111 2.3e-06 1
UNIPROTKB|J3QL05 - symbol:SRSF2 "Serine/arginine-rich-spl... 111 2.3e-06 1
UNIPROTKB|Q8IM34 - symbol:PF14_0057 "RNA binding protein,... 111 2.3e-06 1
TAIR|locus:2086804 - symbol:SCL30A "SC35-like splicing fa... 127 2.6e-06 1
UNIPROTKB|Q5ZKR5 - symbol:NCBP2 "Nuclear cap-binding prot... 118 2.8e-06 1
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 132 3.1e-06 1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 115 3.2e-06 1
SGD|S000001444 - symbol:IST3 "Component of the U2 snRNP" ... 109 3.9e-06 1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot... 113 4.0e-06 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 131 4.3e-06 1
ZFIN|ZDB-GENE-040426-1391 - symbol:tra2a "transformer-2 a... 126 5.0e-06 1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 108 5.1e-06 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 108 5.1e-06 1
UNIPROTKB|E1BLD4 - symbol:RBM28 "Uncharacterized protein"... 131 5.5e-06 1
TAIR|locus:2144945 - symbol:SCL28 "SC35-like splicing fac... 123 6.2e-06 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 107 6.6e-06 1
TAIR|locus:2173338 - symbol:SC35 "ortholog of human splic... 125 6.8e-06 1
UNIPROTKB|F1RXK2 - symbol:NCBP2L "Uncharacterized protein... 112 7.1e-06 1
POMBASE|SPBC146.07 - symbol:prp2 "U2AF large subunit (U2A... 128 7.7e-06 1
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 129 8.4e-06 1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi... 106 8.7e-06 1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi... 106 8.7e-06 1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"... 118 8.8e-06 1
ZFIN|ZDB-GENE-040426-1094 - symbol:tra2b "transformer 2 b... 122 1.3e-05 1
FB|FBgn0010263 - symbol:Rbp9 "RNA-binding protein 9" spec... 125 1.4e-05 1
DICTYBASE|DDB_G0276725 - symbol:DDB_G0276725 "putative RN... 104 1.5e-05 1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p... 110 1.5e-05 1
UNIPROTKB|I3LBN9 - symbol:TRA2B "Uncharacterized protein"... 121 1.8e-05 1
DICTYBASE|DDB_G0277353 - symbol:DDB_G0277353 "RNA-binding... 126 1.8e-05 1
UNIPROTKB|Q9DDU8 - symbol:TRA2B "Uncharacterized protein"... 121 1.9e-05 1
UNIPROTKB|F2Z2U1 - symbol:RBMY1A1 "RNA-binding motif prot... 103 1.9e-05 1
TAIR|locus:2039590 - symbol:AT2G27330 species:3702 "Arabi... 103 1.9e-05 1
UNIPROTKB|A2SW84 - symbol:ncbp2 "Nuclear cap-binding prot... 112 2.3e-05 1
FB|FBgn0022943 - symbol:Cbp20 "cap binding protein 20" sp... 109 2.4e-05 1
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ... 111 2.5e-05 1
UNIPROTKB|Q3ZBT6 - symbol:TRA2B "Transformer-2 protein ho... 120 2.6e-05 1
UNIPROTKB|E2RD37 - symbol:TRA2B "Uncharacterized protein"... 120 2.6e-05 1
UNIPROTKB|P62995 - symbol:TRA2B "Transformer-2 protein ho... 120 2.6e-05 1
WARNING: Descriptions of 125 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0029629 [details] [associations]
symbol:CG8636 species:7227 "Drosophila melanogaster"
[GO:0006413 "translational initiation" evidence=ISS] [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0000022 "mitotic spindle elongation" evidence=IMP] [GO:0007067
"mitosis" evidence=IMP] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00343 SMART:SM00360
GO:GO:0007067 GO:GO:0000166 EMBL:AE014298 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0000022
eggNOG:COG0724 GO:GO:0005852 EMBL:AY118933 RefSeq:NP_570011.1
UniGene:Dm.8117 HSSP:O75821 ProteinModelPortal:Q9W4X7 SMR:Q9W4X7
MINT:MINT-933929 STRING:Q9W4X7 PaxDb:Q9W4X7 PRIDE:Q9W4X7
EnsemblMetazoa:FBtr0070446 GeneID:31243 KEGG:dme:Dmel_CG8636
UCSC:CG8636-RA FlyBase:FBgn0029629 GeneTree:ENSGT00510000047802
InParanoid:Q9W4X7 KO:K03248 OMA:SNLSEAM OrthoDB:EOG4W6MBP
PhylomeDB:Q9W4X7 GenomeRNAi:31243 NextBio:772609 Bgee:Q9W4X7
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
Uniprot:Q9W4X7
Length = 269
Score = 342 (125.4 bits), Expect = 4.2e-51, Sum P(2) = 4.2e-51
Identities = 67/107 (62%), Positives = 79/107 (73%)
Query: 140 YVPPSLREGPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSR 199
YVPP L++ G R DDT AIRISNLS + +E DLE+LVK+ GP SKMYL+R
Sbjct: 166 YVPPFLKDSQKG----ALGMRGRDDTAAIRISNLSESMTEADLEELVKKIGPQSKMYLAR 221
Query: 200 DKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTN 246
DK GLCKGFAY+HFK + DAA AI+ LNG+GYDHLILSV+WSK N
Sbjct: 222 DKNTGLCKGFAYVHFKQRKDAAAAIEILNGHGYDHLILSVEWSKPQN 268
Score = 206 (77.6 bits), Expect = 4.2e-51, Sum P(2) = 4.2e-51
Identities = 38/96 (39%), Positives = 56/96 (58%)
Query: 4 ESTKVVRTLKVEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQFISXXXX 63
+ TKVVRT K+ K++V K +A R+ K+G S NDKPGP S TT++ EE+ +QF++
Sbjct: 46 KKTKVVRTYKISKQVVPKTVAKRRTWTKFGDSKNDKPGPNSQTTMVSEEIIMQFLNSKED 105
Query: 64 XXXXXXXXXXXXXFISCRTCKGAHFTNNCPFKDSAL 99
CR C G H++ NCP+K +A+
Sbjct: 106 EKANDPLLDPTKNIAKCRICNGEHWSVNCPYKGTAM 141
>FB|FBgn0038796 [details] [associations]
symbol:CG10881 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00343
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724
GO:GO:0005852 HSSP:O75821 GeneTree:ENSGT00510000047802 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
RefSeq:NP_650887.1 ProteinModelPortal:Q9VDM6 SMR:Q9VDM6
STRING:Q9VDM6 PaxDb:Q9VDM6 PRIDE:Q9VDM6 EnsemblMetazoa:FBtr0083885
GeneID:42422 KEGG:dme:Dmel_CG10881 UCSC:CG10881-RA
FlyBase:FBgn0038796 InParanoid:Q9VDM6 OMA:LILCVEW OrthoDB:EOG476HG4
PhylomeDB:Q9VDM6 GenomeRNAi:42422 NextBio:828693 Bgee:Q9VDM6
Uniprot:Q9VDM6
Length = 273
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 105/242 (43%), Positives = 144/242 (59%)
Query: 4 ESTKVVRTLKVEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQFISXXXX 63
+ KVVRT K+EK++V K +A R++ K+G S +DKPGP S TT+ EE+ +QFI
Sbjct: 44 KKVKVVRTFKIEKQIVPKAVARRRNWVKFGDSRSDKPGPNSQTTMASEEIFMQFIGSKDF 103
Query: 64 XXXXXXXXXXXXXFISCRTCKGAHFTNNCPFKDSALFLADANKKPFNTVPGTNIMAXXXX 123
CR C G H++ NCP+K +++ D+ TV T A
Sbjct: 104 DQTHETQLDPGKNIAKCRICNGEHWSVNCPYKGTSM---DSK-----TVMETKANAAAAA 155
Query: 124 XXXXXXXXXXXXXXXIYVPPSLREGPG--GKRVEGYNARRNDDTTAIRISNLSVNTSEND 181
YVPP +++G G G + G R DD++A+RISNLS + +E D
Sbjct: 156 AISDPSKTGK------YVPPFMKDGGGISGSKNWG-RGRDRDDSSAVRISNLSESMTETD 208
Query: 182 LEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241
LE+LVK+ GP +KMYL+R+K +GLCKGFAY+HFK + DAA AI+ LNG+GYDHLIL V+W
Sbjct: 209 LEELVKKIGPHTKMYLAREKNSGLCKGFAYVHFKFRQDAAAAIEVLNGHGYDHLILCVEW 268
Query: 242 SK 243
SK
Sbjct: 269 SK 270
>ZFIN|ZDB-GENE-040426-1076 [details] [associations]
symbol:eif3g "eukaryotic translation initiation
factor 3, subunit G" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;ISS] [GO:0005852 "eukaryotic translation initiation
factor 3 complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1076 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 GO:GO:0005852
HSSP:O75821 GeneTree:ENSGT00510000047802 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
EMBL:AY648835 EMBL:BC049046 EMBL:BC153489 IPI:IPI00500209
RefSeq:NP_957293.1 UniGene:Dr.161 ProteinModelPortal:Q6DRC4
SMR:Q6DRC4 STRING:Q6DRC4 PRIDE:Q6DRC4 Ensembl:ENSDART00000018071
Ensembl:ENSDART00000127487 GeneID:393974 KEGG:dre:393974
InParanoid:Q7ZUH3 OMA:NSEFDAP NextBio:20814945 Bgee:Q6DRC4
Uniprot:Q6DRC4
Length = 293
Score = 290 (107.1 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
Identities = 56/108 (51%), Positives = 78/108 (72%)
Query: 140 YVPPSLREGPGGKRVEGYNA-RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLS 198
YVPPSLR+G G +R E RR DD IR++NLS +T E DL++L + FG S++YL+
Sbjct: 186 YVPPSLRDG-GTRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLA 244
Query: 199 RDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTN 246
+DK G KGFA+I F + DAA+AI ++G+GYDHLIL+V+W+K +N
Sbjct: 245 KDKNTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSN 292
Score = 175 (66.7 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
Identities = 35/96 (36%), Positives = 50/96 (52%)
Query: 7 KVVRTLKVEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQFISXXXXXXX 66
K++RT K+E + SK +A RK+ K+G S D PGP TT + ++V + FIS
Sbjct: 53 KIIRTFKIETRKASKAVARRKNWKKFGNSEYDAPGPNVATTTVSDDVFMTFISSKEDLNA 112
Query: 67 XXXXXX-----XXXXFISCRTCKGAHFTNNCPFKDS 97
+SCR CKG H+T CP+KD+
Sbjct: 113 QDQDEDPMNKLKGQKIVSCRICKGDHWTTRCPYKDT 148
>UNIPROTKB|Q6DJI8 [details] [associations]
symbol:eif3g-a "Eukaryotic translation initiation factor 3
subunit G-A" species:8355 "Xenopus laevis" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
HSSP:O75821 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 EMBL:BC075190 RefSeq:NP_001086477.1
UniGene:Xl.48772 ProteinModelPortal:Q6DJI8 SMR:Q6DJI8 GeneID:446311
KEGG:xla:446311 CTD:446311 Xenbase:XB-GENE-6251503
HOVERGEN:HBG026850 Uniprot:Q6DJI8
Length = 308
Score = 297 (109.6 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
Identities = 59/109 (54%), Positives = 80/109 (73%)
Query: 140 YVPPSLREGPGGKRVEGYNA-RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLS 198
YVPPSLR+G G +R E RR DD IR++NLS +T E DL++L + FG S++YL+
Sbjct: 201 YVPPSLRDG-GSRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLA 259
Query: 199 RDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK-STN 246
+DKT G KGFA+I F + DAA+AI ++G+GYDHLIL+V+W+K STN
Sbjct: 260 KDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 308
Score = 166 (63.5 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
Identities = 35/98 (35%), Positives = 51/98 (52%)
Query: 4 ESTKVVRTLKVEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQFISXXXX 63
++ K+VRT K+E SK +A RK+ K+G S D PGP TT + ++V + FI+
Sbjct: 64 KTVKIVRTFKIETVKASKVVAQRKNWKKFGNSEYDPPGPNVATTTVSDDVLMTFITNKED 123
Query: 64 XXXXXXXX----XXXXXFISCRTCKGAHFTNNCPFKDS 97
+SCR CKG H+T CP+KD+
Sbjct: 124 LNNQEEEDPMNKLKGQKIVSCRICKGDHWTTRCPYKDT 161
>UNIPROTKB|Q28CY2 [details] [associations]
symbol:eif3g "Eukaryotic translation initiation factor 3
subunit G" species:8364 "Xenopus (Silurana) tropicalis" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743
eggNOG:COG0724 GO:GO:0005852 GeneTree:ENSGT00510000047802 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
CTD:446311 HOVERGEN:HBG026850 HOGENOM:HOG000239560 EMBL:CR855811
EMBL:BC158150 RefSeq:NP_001016749.1 UniGene:Str.41964
ProteinModelPortal:Q28CY2 SMR:Q28CY2 STRING:Q28CY2
Ensembl:ENSXETT00000047701 GeneID:549503 KEGG:xtr:549503
Xenbase:XB-GENE-6070198 Bgee:Q28CY2 Uniprot:Q28CY2
Length = 310
Score = 297 (109.6 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
Identities = 59/109 (54%), Positives = 80/109 (73%)
Query: 140 YVPPSLREGPGGKRVEGYNA-RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLS 198
YVPPSLR+G G +R E RR DD IR++NLS +T E DL++L + FG S++YL+
Sbjct: 203 YVPPSLRDG-GSRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLA 261
Query: 199 RDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK-STN 246
+DKT G KGFA+I F + DAA+AI ++G+GYDHLIL+V+W+K STN
Sbjct: 262 KDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 310
Score = 164 (62.8 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
Identities = 35/95 (36%), Positives = 49/95 (51%)
Query: 7 KVVRTLKVEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQFISXXXXXXX 66
K+VRT K+E SK +A RK+ K+G S D PGP TT + ++V + FI+
Sbjct: 69 KIVRTFKIETLKASKVVAHRKNWKKFGNSEYDPPGPNVATTTVSDDVLMTFITSKEDLNN 128
Query: 67 XXXXX----XXXXXFISCRTCKGAHFTNNCPFKDS 97
+SCR CKG H+T CP+KD+
Sbjct: 129 QEEEDPMNKLKGQKIVSCRICKGDHWTTRCPYKDT 163
>UNIPROTKB|Q641B2 [details] [associations]
symbol:eif3g-b "Eukaryotic translation initiation factor 3
subunit G-B" species:8355 "Xenopus laevis" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
HSSP:O75821 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 HOVERGEN:HBG026850 EMBL:BC082427
RefSeq:NP_001087888.1 UniGene:Xl.3547 ProteinModelPortal:Q641B2
SMR:Q641B2 PRIDE:Q641B2 GeneID:447749 KEGG:xla:447749
Xenbase:XB-GENE-6070476 Uniprot:Q641B2
Length = 308
Score = 297 (109.6 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 59/109 (54%), Positives = 80/109 (73%)
Query: 140 YVPPSLREGPGGKRVEGYNA-RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLS 198
YVPPSLR+G G +R E RR DD IR++NLS +T E DL++L + FG S++YL+
Sbjct: 201 YVPPSLRDG-GSRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLA 259
Query: 199 RDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK-STN 246
+DKT G KGFA+I F + DAA+AI ++G+GYDHLIL+V+W+K STN
Sbjct: 260 KDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 308
Score = 163 (62.4 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 35/95 (36%), Positives = 49/95 (51%)
Query: 7 KVVRTLKVEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQFISXXXXXXX 66
K+VRT K+E SK +A RK+ K+G S D PGP TT + ++V + FI+
Sbjct: 67 KIVRTFKIETLKASKVVAHRKNWKKFGNSEYDPPGPNVATTTVSDDVLMTFITNKEDLNN 126
Query: 67 XXXXX----XXXXXFISCRTCKGAHFTNNCPFKDS 97
+SCR CKG H+T CP+KD+
Sbjct: 127 QEEEDPMNKLKGQKIVSCRICKGDHWTTRCPYKDT 161
>UNIPROTKB|F2Z4J5 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9913 "Bos taurus" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
GeneTree:ENSGT00510000047802 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 IPI:IPI00700187 UniGene:Bt.49351 OMA:NSEFDAP
EMBL:DAAA02019449 ProteinModelPortal:F2Z4J5 SMR:F2Z4J5 PRIDE:F2Z4J5
Ensembl:ENSBTAT00000003545 Uniprot:F2Z4J5
Length = 320
Score = 291 (107.5 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 58/109 (53%), Positives = 79/109 (72%)
Query: 140 YVPPSLREGPGGKRVEGYNA-RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLS 198
YVPPSLR+G +R E RR DD IR++NLS +T E DL++L + FG S++YL+
Sbjct: 213 YVPPSLRDG-ASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLA 271
Query: 199 RDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK-STN 246
+DKT G KGFA+I F + DAA+AI ++G+GYDHLIL+V+W+K STN
Sbjct: 272 KDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 320
Score = 169 (64.5 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 34/95 (35%), Positives = 50/95 (52%)
Query: 7 KVVRTLKVEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQFISXXXXXXX 66
K+VRT ++E + SK +A RK+ K+G S D PGP TT + ++V + FI+
Sbjct: 80 KIVRTFRIETRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNC 139
Query: 67 XXXXX----XXXXXFISCRTCKGAHFTNNCPFKDS 97
+SCR CKG H+T CP+KD+
Sbjct: 140 QEEEDPMNKLKGQKIVSCRICKGDHWTTRCPYKDT 174
>UNIPROTKB|Q3ZC12 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9913 "Bos taurus" [GO:0006413 "translational
initiation" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0005852 "eukaryotic translation
initiation factor 3 complex" evidence=ISS] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0048471 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 GO:GO:0005852
KO:K03248 HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 HOVERGEN:HBG026850 EMBL:BC102984 IPI:IPI00700187
RefSeq:NP_001073091.1 UniGene:Bt.49351 ProteinModelPortal:Q3ZC12
SMR:Q3ZC12 STRING:Q3ZC12 PRIDE:Q3ZC12 GeneID:615695 KEGG:bta:615695
CTD:8666 HOGENOM:HOG000239560 InParanoid:Q3ZC12 OrthoDB:EOG4Z0B62
NextBio:20899745 Uniprot:Q3ZC12
Length = 320
Score = 291 (107.5 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 58/109 (53%), Positives = 79/109 (72%)
Query: 140 YVPPSLREGPGGKRVEGYNA-RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLS 198
YVPPSLR+G +R E RR DD IR++NLS +T E DL++L + FG S++YL+
Sbjct: 213 YVPPSLRDG-ASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLA 271
Query: 199 RDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK-STN 246
+DKT G KGFA+I F + DAA+AI ++G+GYDHLIL+V+W+K STN
Sbjct: 272 KDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 320
Score = 169 (64.5 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 34/95 (35%), Positives = 50/95 (52%)
Query: 7 KVVRTLKVEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQFISXXXXXXX 66
K+VRT ++E + SK +A RK+ K+G S D PGP TT + ++V + FI+
Sbjct: 80 KIVRTFRIETRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNC 139
Query: 67 XXXXX----XXXXXFISCRTCKGAHFTNNCPFKDS 97
+SCR CKG H+T CP+KD+
Sbjct: 140 QEEEDPMNKLKGQKIVSCRICKGDHWTTRCPYKDT 174
>UNIPROTKB|E2RGG6 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9615 "Canis lupus familiaris" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
GeneTree:ENSGT00510000047802 KO:K03248 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 CTD:8666 OMA:NSEFDAP
EMBL:AAEX03012427 RefSeq:XP_854113.1 ProteinModelPortal:E2RGG6
Ensembl:ENSCAFT00000028426 GeneID:612971 KEGG:cfa:612971
NextBio:20898427 Uniprot:E2RGG6
Length = 320
Score = 291 (107.5 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 58/109 (53%), Positives = 79/109 (72%)
Query: 140 YVPPSLREGPGGKRVEGYNA-RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLS 198
YVPPSLR+G +R E RR DD IR++NLS +T E DL++L + FG S++YL+
Sbjct: 213 YVPPSLRDG-ASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLA 271
Query: 199 RDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK-STN 246
+DKT G KGFA+I F + DAA+AI ++G+GYDHLIL+V+W+K STN
Sbjct: 272 KDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 320
Score = 169 (64.5 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 34/95 (35%), Positives = 50/95 (52%)
Query: 7 KVVRTLKVEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQFISXXXXXXX 66
K+VRT ++E + SK +A RK+ K+G S D PGP TT + ++V + FI+
Sbjct: 80 KIVRTFRIETRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNC 139
Query: 67 XXXXX----XXXXXFISCRTCKGAHFTNNCPFKDS 97
+SCR CKG H+T CP+KD+
Sbjct: 140 QEEEDPMNKLKGQKIVSCRICKGDHWTTRCPYKDT 174
>UNIPROTKB|O75821 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IC;IDA;TAS]
[GO:0003743 "translation initiation factor activity"
evidence=IC;IDA] [GO:0005852 "eukaryotic translation initiation
factor 3 complex" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005829 "cytosol" evidence=TAS] [GO:0006412
"translation" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0044267 "cellular protein metabolic process"
evidence=TAS] Reactome:REACT_71 Reactome:REACT_17015
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 GO:GO:0048471 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724
GO:GO:0005852 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 HOVERGEN:HBG026850
Reactome:REACT_1762 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
OMA:NSEFDAP EMBL:U96074 EMBL:AF020833 EMBL:AF092453 EMBL:AF094850
EMBL:BT006889 EMBL:BC000733 EMBL:BC008469 IPI:IPI00290460
RefSeq:NP_003746.2 UniGene:Hs.529059 PDB:2CQ0 PDBsum:2CQ0
ProteinModelPortal:O75821 SMR:O75821 DIP:DIP-31115N IntAct:O75821
MINT:MINT-3001737 STRING:O75821 PhosphoSite:O75821 PaxDb:O75821
PeptideAtlas:O75821 PRIDE:O75821 DNASU:8666 Ensembl:ENST00000253108
GeneID:8666 KEGG:hsa:8666 UCSC:uc002mnd.3 GeneCards:GC19M010225
HGNC:HGNC:3274 HPA:HPA041997 MIM:603913 neXtProt:NX_O75821
PharmGKB:PA162384827 InParanoid:O75821 PhylomeDB:O75821
ChiTaRS:EIF3G EvolutionaryTrace:O75821 GenomeRNAi:8666
NextBio:32507 Bgee:O75821 CleanEx:HS_EIF3G Genevestigator:O75821
GermOnline:ENSG00000130811 Uniprot:O75821
Length = 320
Score = 291 (107.5 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 58/109 (53%), Positives = 79/109 (72%)
Query: 140 YVPPSLREGPGGKRVEGYNA-RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLS 198
YVPPSLR+G +R E RR DD IR++NLS +T E DL++L + FG S++YL+
Sbjct: 213 YVPPSLRDG-ASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLA 271
Query: 199 RDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK-STN 246
+DKT G KGFA+I F + DAA+AI ++G+GYDHLIL+V+W+K STN
Sbjct: 272 KDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 320
Score = 169 (64.5 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 34/95 (35%), Positives = 50/95 (52%)
Query: 7 KVVRTLKVEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQFISXXXXXXX 66
K+VRT ++E + SK +A RK+ K+G S D PGP TT + ++V + FI+
Sbjct: 80 KIVRTFRIETRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNC 139
Query: 67 XXXXX----XXXXXFISCRTCKGAHFTNNCPFKDS 97
+SCR CKG H+T CP+KD+
Sbjct: 140 QEEEDPMNKLKGQKIVSCRICKGDHWTTRCPYKDT 174
>UNIPROTKB|F1S3I3 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9823 "Sus scrofa" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
GeneTree:ENSGT00510000047802 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 OMA:NSEFDAP EMBL:CU462940 Ensembl:ENSSSCT00000014925
Uniprot:F1S3I3
Length = 322
Score = 291 (107.5 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 58/109 (53%), Positives = 79/109 (72%)
Query: 140 YVPPSLREGPGGKRVEGYNA-RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLS 198
YVPPSLR+G +R E RR DD IR++NLS +T E DL++L + FG S++YL+
Sbjct: 215 YVPPSLRDG-ASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLA 273
Query: 199 RDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK-STN 246
+DKT G KGFA+I F + DAA+AI ++G+GYDHLIL+V+W+K STN
Sbjct: 274 KDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 322
Score = 169 (64.5 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 34/95 (35%), Positives = 50/95 (52%)
Query: 7 KVVRTLKVEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQFISXXXXXXX 66
K+VRT ++E + SK +A RK+ K+G S D PGP TT + ++V + FI+
Sbjct: 82 KIVRTFRIETRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNC 141
Query: 67 XXXXX----XXXXXFISCRTCKGAHFTNNCPFKDS 97
+SCR CKG H+T CP+KD+
Sbjct: 142 QEEEDPMNKLKGQKIVSCRICKGDHWTTRCPYKDT 176
>MGI|MGI:1858258 [details] [associations]
symbol:Eif3g "eukaryotic translation initiation factor 3,
subunit G" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISO;IDA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=ISO;IDA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1858258 GO:GO:0005634 GO:GO:0048471
GO:GO:0000166 GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743
eggNOG:COG0724 GO:GO:0005852 GeneTree:ENSGT00510000047802 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
OMA:NSEFDAP ChiTaRS:EIF3G EMBL:U70733 EMBL:AF108214 EMBL:BC008511
IPI:IPI00622371 RefSeq:NP_058572.2 UniGene:Mm.427309
ProteinModelPortal:Q9Z1D1 SMR:Q9Z1D1 IntAct:Q9Z1D1
MINT:MINT-1572167 STRING:Q9Z1D1 PhosphoSite:Q9Z1D1
REPRODUCTION-2DPAGE:Q9Z1D1 PaxDb:Q9Z1D1 PRIDE:Q9Z1D1
Ensembl:ENSMUST00000004206 GeneID:53356 KEGG:mmu:53356
InParanoid:Q9Z1D1 NextBio:310169 Bgee:Q9Z1D1 Genevestigator:Q9Z1D1
GermOnline:ENSMUSG00000070319 Uniprot:Q9Z1D1
Length = 320
Score = 291 (107.5 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 58/109 (53%), Positives = 79/109 (72%)
Query: 140 YVPPSLREGPGGKRVEGYNA-RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLS 198
YVPPSLR+G +R E RR DD IR++NLS +T E DL++L + FG S++YL+
Sbjct: 213 YVPPSLRDG-ASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLA 271
Query: 199 RDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK-STN 246
+DKT G KGFA+I F + DAA+AI ++G+GYDHLIL+V+W+K STN
Sbjct: 272 KDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 320
Score = 169 (64.5 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 34/95 (35%), Positives = 50/95 (52%)
Query: 7 KVVRTLKVEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQFISXXXXXXX 66
K+VRT ++E + SK +A RK+ K+G S D PGP TT + ++V + FI+
Sbjct: 80 KIVRTFRIETRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNC 139
Query: 67 XXXXX----XXXXXFISCRTCKGAHFTNNCPFKDS 97
+SCR CKG H+T CP+KD+
Sbjct: 140 QEEEDPMNKLKGQKIVSCRICKGDHWTTRCPYKDT 174
>RGD|1307191 [details] [associations]
symbol:Eif3g "eukaryotic translation initiation factor 3,
subunit G" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISO;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005852 "eukaryotic translation
initiation factor 3 complex" evidence=IEA;ISO;ISS] [GO:0006413
"translational initiation" evidence=ISO;ISS] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 RGD:1307191
GO:GO:0005634 GO:GO:0048471 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 EMBL:CH473993
GO:GO:0005852 HSSP:O75821 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
EMBL:BC086383 IPI:IPI00365487 RefSeq:NP_001013113.1
UniGene:Rn.107880 ProteinModelPortal:Q5RK09 SMR:Q5RK09
STRING:Q5RK09 PhosphoSite:Q5RK09 PRIDE:Q5RK09 GeneID:298700
KEGG:rno:298700 UCSC:RGD:1307191 InParanoid:Q5RK09 NextBio:644231
ArrayExpress:Q5RK09 Genevestigator:Q5RK09 Uniprot:Q5RK09
Length = 320
Score = 291 (107.5 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 58/109 (53%), Positives = 79/109 (72%)
Query: 140 YVPPSLREGPGGKRVEGYNA-RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLS 198
YVPPSLR+G +R E RR DD IR++NLS +T E DL++L + FG S++YL+
Sbjct: 213 YVPPSLRDG-ASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLA 271
Query: 199 RDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK-STN 246
+DKT G KGFA+I F + DAA+AI ++G+GYDHLIL+V+W+K STN
Sbjct: 272 KDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 320
Score = 169 (64.5 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 34/95 (35%), Positives = 50/95 (52%)
Query: 7 KVVRTLKVEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQFISXXXXXXX 66
K+VRT ++E + SK +A RK+ K+G S D PGP TT + ++V + FI+
Sbjct: 80 KIVRTFRIETRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNC 139
Query: 67 XXXXX----XXXXXFISCRTCKGAHFTNNCPFKDS 97
+SCR CKG H+T CP+KD+
Sbjct: 140 QEEEDPMNKLKGQKIVSCRICKGDHWTTRCPYKDT 174
>UNIPROTKB|Q5RK09 [details] [associations]
symbol:Eif3g "Eukaryotic translation initiation factor 3
subunit G" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 RGD:1307191
GO:GO:0005634 GO:GO:0048471 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 EMBL:CH473993
GO:GO:0005852 HSSP:O75821 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
EMBL:BC086383 IPI:IPI00365487 RefSeq:NP_001013113.1
UniGene:Rn.107880 ProteinModelPortal:Q5RK09 SMR:Q5RK09
STRING:Q5RK09 PhosphoSite:Q5RK09 PRIDE:Q5RK09 GeneID:298700
KEGG:rno:298700 UCSC:RGD:1307191 InParanoid:Q5RK09 NextBio:644231
ArrayExpress:Q5RK09 Genevestigator:Q5RK09 Uniprot:Q5RK09
Length = 320
Score = 291 (107.5 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 58/109 (53%), Positives = 79/109 (72%)
Query: 140 YVPPSLREGPGGKRVEGYNA-RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLS 198
YVPPSLR+G +R E RR DD IR++NLS +T E DL++L + FG S++YL+
Sbjct: 213 YVPPSLRDG-ASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLA 271
Query: 199 RDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK-STN 246
+DKT G KGFA+I F + DAA+AI ++G+GYDHLIL+V+W+K STN
Sbjct: 272 KDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 320
Score = 169 (64.5 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 34/95 (35%), Positives = 50/95 (52%)
Query: 7 KVVRTLKVEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQFISXXXXXXX 66
K+VRT ++E + SK +A RK+ K+G S D PGP TT + ++V + FI+
Sbjct: 80 KIVRTFRIETRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNC 139
Query: 67 XXXXX----XXXXXFISCRTCKGAHFTNNCPFKDS 97
+SCR CKG H+T CP+KD+
Sbjct: 140 QEEEDPMNKLKGQKIVSCRICKGDHWTTRCPYKDT 174
>UNIPROTKB|K7ENA8 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC020931 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 HGNC:HGNC:3274
Ensembl:ENST00000589454 Uniprot:K7ENA8
Length = 289
Score = 215 (80.7 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
Identities = 44/86 (51%), Positives = 59/86 (68%)
Query: 140 YVPPSLREGPGGKRVEGYNA-RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLS 198
YVPPSLR+G +R E RR DD IR++NLS +T E DL++L + FG S++YL+
Sbjct: 205 YVPPSLRDG-ASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLA 263
Query: 199 RDKTNGLCKGFAYIHFKNKADAAKAI 224
+DKT G KGFA+I F + DAA+AI
Sbjct: 264 KDKTTGQSKGFAFISFHRREDAARAI 289
Score = 169 (64.5 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
Identities = 34/95 (35%), Positives = 50/95 (52%)
Query: 7 KVVRTLKVEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQFISXXXXXXX 66
K+VRT ++E + SK +A RK+ K+G S D PGP TT + ++V + FI+
Sbjct: 80 KIVRTFRIETRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNC 139
Query: 67 XXXXX----XXXXXFISCRTCKGAHFTNNCPFKDS 97
+SCR CKG H+T CP+KD+
Sbjct: 140 QEEEDPMNKLKGQKIVSCRICKGDHWTTRCPYKDT 174
>UNIPROTKB|A4RHN3 [details] [associations]
symbol:TIF35 "Eukaryotic translation initiation factor 3
subunit G" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 EMBL:CM001232 eggNOG:COG0724 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
RefSeq:XP_003715298.1 ProteinModelPortal:A4RHN3 STRING:A4RHN3
GeneID:2682994 KEGG:mgr:MGG_07109 OrthoDB:EOG4QJVX7 Uniprot:A4RHN3
Length = 303
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 81/255 (31%), Positives = 126/255 (49%)
Query: 3 VESTKVVRTLKVEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQFISXXX 62
V++T+ VR L +++V+ +A RK K+G SA D PGP S+TT +GE + + +
Sbjct: 52 VKTTRRVR-LTTHREVVNPRVAERKKWEKFGLSAKDGPGPASDTTSVGENIIFRPSANWR 110
Query: 63 XXXXXXXXXXXXXXF--------ISCRTCKGAHFTNNCPFKDSALFLADANKKPFNTVPG 114
+ CR C G HFT CP+KD+ + +A P V G
Sbjct: 111 KDQKDESKDANANAMKDKLKDKKVKCRICNGEHFTARCPYKDTMAPIGEA--APAGGVGG 168
Query: 115 TNIMAXXXXXXXXXXXXXXXXXXXIYVPPSLR----EGP--GGKRVEGYNARRNDDTTAI 168
YVPP+LR EG GG Y R DD +
Sbjct: 169 GGDDEGGILSAPGAAGGAGAKKGS-YVPPALRGDRKEGEKMGGGAGGKYGER--DDLATL 225
Query: 169 RISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLN 228
R++N+S E +L D+ ++FG ++++L++D+ GL KGFA+I F ++ DA KA ++
Sbjct: 226 RVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADREDAVKACNKMD 285
Query: 229 GYGYDHLILSVDWSK 243
G+G+ HLIL V+++K
Sbjct: 286 GWGFKHLILRVEFAK 300
>TAIR|locus:2080772 [details] [associations]
symbol:EIF3G1 "eukaryotic translation initiation factor
3G1" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS;TAS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006413 "translational
initiation" evidence=TAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005852 "eukaryotic translation initiation factor
3 complex" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0009853 "photorespiration" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
[GO:0080129 "proteasome core complex assembly" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00343 SMART:SM00360 GO:GO:0005886 EMBL:CP002686
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003743
GO:GO:0005852 KO:K03248 OMA:SNLSEAM InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 IPI:IPI00938678
RefSeq:NP_001154607.1 UniGene:At.25153 ProteinModelPortal:F4J6A1
SMR:F4J6A1 PRIDE:F4J6A1 EnsemblPlants:AT3G11400.2 GeneID:820313
KEGG:ath:AT3G11400 Uniprot:F4J6A1
Length = 321
Score = 271 (100.5 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 61/165 (36%), Positives = 90/165 (54%)
Query: 80 CRTC--KGAHFTNNCPFKDSALFLADANKKPFNTVPGTNIMAXXXXXXXXXXXXXXXXXX 137
CR C KG H+T+ CP+KD A A F P T
Sbjct: 166 CRICHKKGDHWTSKCPYKDLA-----APTDVFIDKPPTG--------ESSTMSAAPGTGK 212
Query: 138 XIYVPPSLREGPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYL 197
YVPPS+R G V G + RR +D ++R++NLS +T E DL +L FG +++Y+
Sbjct: 213 AAYVPPSMRAGADRSAV-GSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYV 271
Query: 198 SRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242
+ D+ G+ +GF +++F ++ DA +AI LNGYGYD+LIL V+W+
Sbjct: 272 AIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWA 316
Score = 53 (23.7 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 15/55 (27%), Positives = 31/55 (56%)
Query: 3 VESTKVVRTLKVEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIG-EEVHIQ 56
V+ T R K+ ++K R++ K+G +AN++ G S+ T++ EE+ ++
Sbjct: 55 VKITTRTRVRKLASARLNKRAMERRNWPKFGDAANEEAG--SHLTMVSTEEILLE 107
>ASPGD|ASPL0000001581 [details] [associations]
symbol:AN10765 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016282 "eukaryotic 43S preinitiation complex"
evidence=IEA] [GO:0071541 "eukaryotic translation initiation factor
3 complex, eIF3m" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0071540 "eukaryotic translation initiation factor 3 complex,
eIF3e" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001301
GO:GO:0003743 HSSP:O75821 OMA:SNLSEAM HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353 EMBL:AACD01000103
ProteinModelPortal:C8V330 STRING:Q5B0B3
EnsemblFungi:CADANIAT00007002 Uniprot:C8V330
Length = 289
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 77/253 (30%), Positives = 124/253 (49%)
Query: 4 ESTKVVRTLK--VEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQ-FISX 60
+ KV R +K V ++ V+ +A R+ AK+G GP +TT +GE + + ++
Sbjct: 46 KKVKVTRRIKTTVVREHVNPQVAERRTWAKFGLEKGHAAGPSFDTTSVGENIVFRPSVNW 105
Query: 61 XXXXXXXXXXXXXXXXF--------ISCRTCKGAHFTNNCPFKDSALFLADANKKPFNTV 112
+ CR C G HFT CPFKD+ +A ++
Sbjct: 106 KAQAAEAEKNGGEKGSIKDQLKDKKVKCRICSGEHFTARCPFKDT---MAPVDE------ 156
Query: 113 PGTNIMAXXXXXXXXXXXXXXXXXXXIYVPPSLREGP--GGKRVEGYNARRNDDTTAIRI 170
PG A YVPP LR+G GG+R+ G + DD +R+
Sbjct: 157 PGAG-GAEGGAAAGEDAAGGLGAGGGSYVPPHLRKGAAGGGERMAGKYEK--DDLATLRV 213
Query: 171 SNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGY 230
+N+S E +L DL ++FG ++++L+RD+ KGFA+I F +++DAA+A ++G+
Sbjct: 214 TNVSELAEEQELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRSDAARACDKMDGF 273
Query: 231 GYDHLILSVDWSK 243
GY HLIL V+++K
Sbjct: 274 GYRHLILRVEFAK 286
>POMBASE|SPBC18H10.03 [details] [associations]
symbol:tif35 "translation initiation factor eIF3g"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006413 "translational initiation"
evidence=ISS] [GO:0016282 "eukaryotic 43S preinitiation complex"
evidence=IDA] [GO:0071540 "eukaryotic translation initiation factor
3 complex, eIF3e" evidence=IDA] [GO:0071541 "eukaryotic translation
initiation factor 3 complex, eIF3m" evidence=IDA] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC18H10.03 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GenomeReviews:CU329671_GR
GO:GO:0003723 GO:GO:0003743 eggNOG:COG0724 GO:GO:0002183 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
GO:GO:0016282 GO:GO:0071540 GO:GO:0071541 HOGENOM:HOG000239560
OMA:NSEFDAP OrthoDB:EOG4QJVX7 EMBL:AB011823 EMBL:D89144 PIR:T39767
RefSeq:NP_595727.1 ProteinModelPortal:P78795 STRING:P78795
EnsemblFungi:SPBC18H10.03.1 GeneID:2540819 KEGG:spo:SPBC18H10.03
NextBio:20801936 Uniprot:P78795
Length = 282
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 72/250 (28%), Positives = 119/250 (47%)
Query: 3 VESTKVVRTLKVEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQFI---- 58
V+ T+V+R + ++ V +A RK K+GK A G + TT +GE V ++
Sbjct: 46 VKVTRVIRKTVITER-VQHAVAERKKWKKFGKEAGKNSGVDARTTSVGENVQLRLQLGWT 104
Query: 59 -----SXXXXXXXXXXXXXXXXXFISCRTCKGAHFTNNCPFKDSALFLADANKKPFNTVP 113
+ CR CKG HFT CP+K + ++ P + P
Sbjct: 105 TTKEEEQDEAALAAAKVKAKGSSVVRCRACKGNHFTAQCPYKS---IIGPVDEPPLDASP 161
Query: 114 GTNIMAXXXXXXXXXXXXXXXXXXXIYVPPSLREGPGGKRVEGYNARRNDDTTAIRISNL 173
++ + Y+ P LR G G + + R DD+ +R++NL
Sbjct: 162 VSSRASGALGEKGR------------YIAPHLRAGSGRESGDSMFKRERDDSATLRVTNL 209
Query: 174 SVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYD 233
S +T E +L DL ++FG ++YL++DK G KGFA++ + ++ A KA L+GYG++
Sbjct: 210 SDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDGYGWN 269
Query: 234 HLILSVDWSK 243
+LIL ++SK
Sbjct: 270 NLILRCEFSK 279
>WB|WBGene00001230 [details] [associations]
symbol:eif-3.G species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00343 SMART:SM00360 GO:GO:0009792 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0000003
GO:GO:0003743 EMBL:Z50044 eggNOG:COG0724
GeneTree:ENSGT00510000047802 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOGENOM:HOG000239560 PIR:T21238 RefSeq:NP_495778.1
ProteinModelPortal:Q19706 SMR:Q19706 STRING:Q19706 PaxDb:Q19706
EnsemblMetazoa:F22B5.2.1 EnsemblMetazoa:F22B5.2.2
EnsemblMetazoa:F22B5.2.3 GeneID:174346 KEGG:cel:CELE_F22B5.2
CTD:174346 WormBase:F22B5.2 InParanoid:Q19706 OMA:TRTETAF
NextBio:883648 Uniprot:Q19706
Length = 256
Score = 186 (70.5 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 36/97 (37%), Positives = 60/97 (61%)
Query: 151 GKRVEGYNARRN-DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGF 209
G R +G RN D R++NL +E++L DL + G +++++RDK GL KGF
Sbjct: 160 GMRPDGRQIDRNRSDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGF 219
Query: 210 AYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTN 246
A++ F+++ DAA+AI LN H++L V+W++ +N
Sbjct: 220 AFVTFESRDDAARAIAELNDIRMYHMVLKVEWTRPSN 256
Score = 120 (47.3 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 32/94 (34%), Positives = 42/94 (44%)
Query: 7 KVVRTLKVEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQFISXXXXXXX 66
KVV KV K V K +A RK K+G + GPQ TT + EEV +QF
Sbjct: 44 KVVTQFKVINKRVPKVVADRKKWVKFGSCKGEPAGPQVATTYVAEEVDMQFTRNRAGEQI 103
Query: 67 XXXXXXXXXXFIS----CRTCKGA-HFTNNCPFK 95
+ CR CKG H++ +CP+K
Sbjct: 104 LDVQEDKQTAKTTSREHCRHCKGNDHWSTHCPYK 137
>CGD|CAL0003839 [details] [associations]
symbol:TIF35 species:5476 "Candida albicans" [GO:0016282
"eukaryotic 43S preinitiation complex" evidence=IEA] [GO:0071541
"eukaryotic translation initiation factor 3 complex, eIF3m"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0071540
"eukaryotic translation initiation factor 3 complex, eIF3e"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0002188
"translation reinitiation" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 CGD:CAL0003839
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003743
eggNOG:COG0724 HSSP:O75821 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353 EMBL:AACQ01000092
RefSeq:XP_715036.1 ProteinModelPortal:Q59ZV5 STRING:Q59ZV5
GeneID:3643308 KEGG:cal:CaO19.7236 Uniprot:Q59ZV5
Length = 279
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 79/249 (31%), Positives = 116/249 (46%)
Query: 3 VESTKVVRTLKVEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQFISX-- 60
V+ T+ ++ +KV++K V IA RK+ KYGK N PGP ++TT +GE+V ++ +
Sbjct: 44 VKITQKIKEVKVQEK-VHPLIAQRKNWKKYGKEKNSPPGPDTSTTQLGEKVDLKLGTSWK 102
Query: 61 -----XXXXXXXXXXXXXXXXFISCRTCKGAHFTNNCPFKDSALFLADANKKPFNTVPGT 115
I CR C G H+T CPFKD+ A A P T P
Sbjct: 103 QDEKKEEEDKAHERAQKIAVQTIKCRVCGGDHYTAKCPFKDT--LGAAAGVTPSGTTPEP 160
Query: 116 NIMAXXXXXXXXXXXXXXXXXXXIYVPPSLREGPGGKRVEGYNARRNDDTTAIRISNLSV 175
YVP LR G V AR DD+T +++S L+
Sbjct: 161 TSEGGAGAAGAGK-----------YVPRHLRADANGN-VPTREAR--DDSTTLKVSQLNS 206
Query: 176 NTSENDLE-DLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDH 234
E+ L +L +FGP ++ + R++ G +GFAY+ F + A +A+ NG GY
Sbjct: 207 FVDEDMLRNELFAKFGPLQRVTIVRNRETGESRGFAYVSFATEEIAQRALDTFNGKGYHS 266
Query: 235 LILSVDWSK 243
LIL ++WSK
Sbjct: 267 LILHLEWSK 275
>SGD|S000002837 [details] [associations]
symbol:TIF35 "eIF3g subunit of the eukaryotic translation
initiation factor 3 (eIF3)" species:4932 "Saccharomyces cerevisiae"
[GO:0005852 "eukaryotic translation initiation factor 3 complex"
evidence=IDA;IPI] [GO:0003743 "translation initiation factor
activity" evidence=IEA;IDA] [GO:0006413 "translational initiation"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0002188 "translation
reinitiation" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 SGD:S000002837 EMBL:U33007 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:BK006938 GO:GO:0003743 eggNOG:COG0724
GO:GO:0005852 GeneTree:ENSGT00510000047802 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353 GO:GO:0002188
HOGENOM:HOG000239560 OMA:NSEFDAP OrthoDB:EOG4QJVX7 EMBL:AF004913
PIR:S69710 RefSeq:NP_010717.1 ProteinModelPortal:Q04067 SMR:Q04067
DIP:DIP-1704N IntAct:Q04067 MINT:MINT-411912 STRING:Q04067
PaxDb:Q04067 PeptideAtlas:Q04067 EnsemblFungi:YDR429C GeneID:852039
KEGG:sce:YDR429C CYGD:YDR429c NextBio:970284 Genevestigator:Q04067
GermOnline:YDR429C Uniprot:Q04067
Length = 274
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 73/243 (30%), Positives = 112/243 (46%)
Query: 6 TKVVRTLKVEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQFI---SXXX 62
T+ V+ +KV +K V K +A RK+ KYG GP + T +GEEV ++
Sbjct: 33 TQKVKEVKVLEK-VHKSVAERKNWHKYGSEKGSPAGPSAVTARLGEEVELRLSRNWKQAE 91
Query: 63 XXXXXXXXXXXXXXFISCRTCKGAHFTNNCPFKDSALFLADANKKPFNTVPGTNIMAXXX 122
+ CR C H T NCPFK + L A + P G +
Sbjct: 92 EERIQKEKASLTKTGLQCRLCGNDHMTMNCPFK-TILSELSALEDPATNEGGVEAASEEK 150
Query: 123 XXXXXXXXXXXXXXXXIYVPPSLREGPGGKRVEGY-NARRNDDTTAIRISNLSVNTSEND 181
YVPPS R G + Y ++R DD ++I ++ N EN
Sbjct: 151 AGQVGGAGSIPGQ----YVPPSRRAGARDPSSDAYRDSRERDDMCTLKIMQVNENADENS 206
Query: 182 L-EDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVD 240
L E+L+ F P ++ + R+K G +G A++ F ++ A +A+++L+G GY +LIL V+
Sbjct: 207 LREELLFPFAPIPRVSVVRNKETGKSRGLAFVTFSSEEVAEQALRFLDGRGYMNLILRVE 266
Query: 241 WSK 243
WSK
Sbjct: 267 WSK 269
>TAIR|locus:2153659 [details] [associations]
symbol:EIF3G2 "eukaryotic translation initiation factor
3G2" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006413 "translational initiation"
evidence=TAS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005852 "eukaryotic translation initiation factor 3 complex"
evidence=ISS] [GO:0006333 "chromatin assembly or disassembly"
evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0042991 "transcription factor import into
nucleus" evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00343 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003743 GO:GO:0005852 EMBL:AB017060 KO:K03248
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOGENOM:HOG000239560 HSSP:P11940 IPI:IPI00528477 RefSeq:NP_196219.3
UniGene:At.20561 ProteinModelPortal:Q9FI86 SMR:Q9FI86 STRING:Q9FI86
PRIDE:Q9FI86 EnsemblPlants:AT5G06000.1 GeneID:830487
KEGG:ath:AT5G06000 TAIR:At5g06000 InParanoid:Q9FI86 OMA:KFNDEGK
PhylomeDB:Q9FI86 ProtClustDB:CLSN2925586 Genevestigator:Q9FI86
Uniprot:Q9FI86
Length = 308
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 72/253 (28%), Positives = 120/253 (47%)
Query: 4 ESTKVVRTLKVEKKLVSKGIALRKHLAKYGKSANDKPGP----QSNTTIIGEEVHIQFIS 59
+ K+ T +V+K+ ++K R+ K+G +A+++ +S II E + +
Sbjct: 54 KKVKITTTTRVQKRALTKQAVERRSWNKFGDAAHEESSSYLTMRSTEDIILERIRAPGSN 113
Query: 60 XXXXXXXXXXXXXXX---XXFISCRTC--KGAHFTNNCPFKDSALFLADANKKPFNTVPG 114
+ CR C KG H+T+ CP KD L L D +P
Sbjct: 114 AEQSTVSGDSMSQLGKPGAVLMVCRLCQKKGDHWTSRCPQKD-LLSLMD---EPLTAETS 169
Query: 115 TNIMAXXXXXXXXXXXXXXXXXXXIYVPPSLREGPGGKRVEGYNARRNDDTTAIRISNLS 174
T+ + YVPPS+REG ++ G + R D ++R++NLS
Sbjct: 170 TSTITGTGRAA--------------YVPPSMREG-ADRKAGGSDMRSRHDENSVRVTNLS 214
Query: 175 VNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDH 234
+T DL +L + FG ++ +++ D+ + +GF ++ F ++ DA +AI LNGYGYD+
Sbjct: 215 EDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDN 274
Query: 235 LILSVDWSKSTNQ 247
LIL V+WS Q
Sbjct: 275 LILRVEWSTPKTQ 287
>UNIPROTKB|K7EL20 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR017334 PIRSF:PIRSF037949 EMBL:AC020931
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353 HGNC:HGNC:3274
Ensembl:ENST00000588709 Uniprot:K7EL20
Length = 263
Score = 166 (63.5 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 33/95 (34%), Positives = 50/95 (52%)
Query: 7 KVVRTLKVEKKLVSKGIALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQFISXXXXXXX 66
++VRT ++E + SK +A RK+ K+G S D PGP TT + ++V + FI+
Sbjct: 82 RIVRTFRIETRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNC 141
Query: 67 XXXXX----XXXXXFISCRTCKGAHFTNNCPFKDS 97
+SCR CKG H+T CP+KD+
Sbjct: 142 QEEEDPMNKLKGQKIVSCRICKGDHWTTRCPYKDT 176
Score = 109 (43.4 bits), Expect = 2.2e-22, Sum P(2) = 2.2e-22
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 140 YVPPSLREGPGGKRVEGYNA-RRNDDTTAIRISNLSVNTSENDLEDLVK 187
YVPPSLR+G +R E RR DD IR++NLS +T E DL++L +
Sbjct: 215 YVPPSLRDG-ASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFR 262
>DICTYBASE|DDB_G0279549 [details] [associations]
symbol:eif3G "eukaryotic translation initiation
factor 3 (eIF3) subunit G" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0279549 GO:GO:0000166
GenomeReviews:CM000152_GR Gene3D:3.30.70.330 GO:GO:0003743
EMBL:AAFI02000031 eggNOG:COG0724 GO:GO:0005852 HSSP:O75821
KO:K03248 HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 OMA:LILCVEW RefSeq:XP_641693.1
ProteinModelPortal:Q54WM4 STRING:Q54WM4 PRIDE:Q54WM4
EnsemblProtists:DDB0233922 GeneID:8622102 KEGG:ddi:DDB_G0279549
Uniprot:Q54WM4
Length = 233
Score = 190 (71.9 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 41/104 (39%), Positives = 63/104 (60%)
Query: 140 YVPPSLREGPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSR 199
Y+ P+LR G G G D +I +SNLS N +E DL +L QFGP S++ + +
Sbjct: 132 YIAPNLRGGYTGSAPSG------SDVPSIMVSNLSQNATEKDLYELFGQFGPVSRVSIPK 185
Query: 200 DKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243
G KGFAY+ + + A KA++ LNG+ YD+L+LS++++K
Sbjct: 186 SM-EGSSKGFAYVTYNHLDSAEKALKQLNGHRYDYLVLSLEFAK 228
Score = 84 (34.6 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 30/115 (26%), Positives = 46/115 (40%)
Query: 4 ESTKVVRTLKVEKKLVSKG--IALRKHLAKYGKSANDKPGPQSNTTIIGEEVHIQFISXX 61
E KV++ + + V + + RK K+G+ N K G ++ T G+E QF+
Sbjct: 26 EEVKVIKRYQEYQITVKRNRKVDERKKWKKFGECDN-KTGLEN--TAYGDE---QFL--- 76
Query: 62 XXXXXXXXXXXXXXXFISCRTCKGAHFTNNCPFKDSALFLADANKKPFNTVPGTN 116
+ CR CK HFT CP+KD+ K P +N
Sbjct: 77 -VLTRGAEVKEEEKDVVKCRICKKNHFTTKCPYKDALELTTQPQKSEKEEKPISN 130
>UNIPROTKB|K7EP16 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 Gene3D:3.30.70.330
EMBL:AC020931 PANTHER:PTHR10352 HGNC:HGNC:3274
Ensembl:ENST00000593054 Uniprot:K7EP16
Length = 118
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 51/108 (47%), Positives = 70/108 (64%)
Query: 140 YVPPSLREGPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSR 199
YVPPSLR+G +R E R +DT E DL++L + FG S++YL++
Sbjct: 24 YVPPSLRDG-ASRRGESMQPNRREDTR------------ETDLQELFRPFGSISRIYLAK 70
Query: 200 DKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK-STN 246
DKT G KGFA+I F + DAA+AI ++G+GYDHLIL+V+W+K STN
Sbjct: 71 DKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 118
>GENEDB_PFALCIPARUM|MAL8P1.83 [details] [associations]
symbol:MAL8P1.83 "eukaryotictranslation
initiation factor, putative" species:5833 "Plasmodium falciparum"
[GO:0006412 "translation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003743 HSSP:P19339
KO:K03248 PANTHER:PTHR10352 HOGENOM:HOG000239560 EMBL:AL844507
RefSeq:XP_001349368.1 ProteinModelPortal:Q8IAZ3 IntAct:Q8IAZ3
MINT:MINT-1709542 EnsemblProtists:MAL8P1.83:mRNA GeneID:2655434
KEGG:pfa:MAL8P1.83 EuPathDB:PlasmoDB:PF3D7_0815600 OMA:WAKPSNR
ProtClustDB:CLSZ2435783 Uniprot:Q8IAZ3
Length = 266
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 36/100 (36%), Positives = 65/100 (65%)
Query: 151 GKRVEGYNARRNDDTT---AIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCK 207
G+R EG R +D +R++NLS + +EN+L +L + G +M+L++ K K
Sbjct: 168 GRR-EGLYYRPHDTQNKECTVRVTNLSEDVNENELSNLFGKVGNIVRMFLAKHKETQNSK 226
Query: 208 GFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTNQ 247
GFA+I + + +A +AI+ LN +G+++L+LSV+W+K +N+
Sbjct: 227 GFAFITYSKREEAKRAIEKLNRHGFENLLLSVEWAKPSNR 266
>UNIPROTKB|Q8IAZ3 [details] [associations]
symbol:MAL8P1.83 "Eukaryotic translation initiation factor
3 subunit G" species:36329 "Plasmodium falciparum 3D7" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 HSSP:P19339 KO:K03248 PANTHER:PTHR10352
HOGENOM:HOG000239560 EMBL:AL844507 RefSeq:XP_001349368.1
ProteinModelPortal:Q8IAZ3 IntAct:Q8IAZ3 MINT:MINT-1709542
EnsemblProtists:MAL8P1.83:mRNA GeneID:2655434 KEGG:pfa:MAL8P1.83
EuPathDB:PlasmoDB:PF3D7_0815600 OMA:WAKPSNR ProtClustDB:CLSZ2435783
Uniprot:Q8IAZ3
Length = 266
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 36/100 (36%), Positives = 65/100 (65%)
Query: 151 GKRVEGYNARRNDDTT---AIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCK 207
G+R EG R +D +R++NLS + +EN+L +L + G +M+L++ K K
Sbjct: 168 GRR-EGLYYRPHDTQNKECTVRVTNLSEDVNENELSNLFGKVGNIVRMFLAKHKETQNSK 226
Query: 208 GFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTNQ 247
GFA+I + + +A +AI+ LN +G+++L+LSV+W+K +N+
Sbjct: 227 GFAFITYSKREEAKRAIEKLNRHGFENLLLSVEWAKPSNR 266
>UNIPROTKB|K7ER90 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR012677 InterPro:IPR017334 PIRSF:PIRSF037949
Gene3D:3.30.70.330 EMBL:AC020931 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 HGNC:HGNC:3274
Ensembl:ENST00000587146 Uniprot:K7ER90
Length = 227
Score = 114 (45.2 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 140 YVPPSLREGPGGKRVEGYNA-RRNDDTTAIRISNLSVNTSENDLEDLVKQF 189
YVPPSLR+G +R E RR DD IR++NLS +T E DL++L + F
Sbjct: 178 YVPPSLRDG-ASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPF 227
Score = 83 (34.3 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 78 ISCRTCKGAHFTNNCPFKDS 97
+SCR CKG H+T CP+KD+
Sbjct: 120 VSCRICKGDHWTTRCPYKDT 139
Score = 58 (25.5 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 7 KVVRTLKVEKKLVSKGIALRKHL 29
K+VRT ++E + SK +A RK L
Sbjct: 80 KIVRTFRIETRKASKAVARRKDL 102
>UNIPROTKB|E1C875 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
IPI:IPI00681985 ProteinModelPortal:E1C875
Ensembl:ENSGALT00000031186 Uniprot:E1C875
Length = 182
Score = 130 (50.8 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 26/85 (30%), Positives = 51/85 (60%)
Query: 159 ARRNDD-TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNK 217
+R N D T + + LS+ T+E DL ++ ++GP + + + D+ G +GFA+++F+
Sbjct: 10 SRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERI 69
Query: 218 ADAAKAIQYLNGYGYDHLILSVDWS 242
D+ +A+++ NG D + VD+S
Sbjct: 70 DDSKEAMEHANGMELDGRRIRVDYS 94
>UNIPROTKB|Q3ZBJ1 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9913 "Bos taurus" [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0046833
"positive regulation of RNA export from nucleus" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISS]
[GO:0005845 "mRNA cap binding complex" evidence=ISS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISS] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 HOVERGEN:HBG052581 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 EMBL:BC103267 IPI:IPI00687118
RefSeq:NP_001029568.1 UniGene:Bt.49382 ProteinModelPortal:Q3ZBJ1
SMR:Q3ZBJ1 STRING:Q3ZBJ1 PRIDE:Q3ZBJ1 Ensembl:ENSBTAT00000011684
GeneID:510872 KEGG:bta:510872 CTD:22916
GeneTree:ENSGT00390000003197 InParanoid:Q3ZBJ1 OMA:RQDYDPA
NextBio:20869659 GO:GO:0046833 GO:GO:0006408 Uniprot:Q3ZBJ1
Length = 156
Score = 124 (48.7 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+ NLS T+E + +L + G K+ + DK GF ++ + ++ADA A++Y+NG
Sbjct: 44 VGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING 103
Query: 230 YGYDHLILSVDW 241
D I+ DW
Sbjct: 104 TRLDDRIIRTDW 115
>UNIPROTKB|E2RFC9 [details] [associations]
symbol:NCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0006370 "7-methylguanosine mRNA capping"
evidence=IEA] [GO:0005845 "mRNA cap binding complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0000340 "RNA 7-methylguanosine cap binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005846
"nuclear cap binding complex" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
GO:GO:0006446 Gene3D:3.30.70.330 GO:GO:0005845 GO:GO:0000340
GO:GO:0006370 PANTHER:PTHR18847 KO:K12883 CTD:22916
GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AAEX03017103
RefSeq:XP_535779.1 ProteinModelPortal:E2RFC9 SMR:E2RFC9
PRIDE:E2RFC9 Ensembl:ENSCAFT00000020794 GeneID:478603
KEGG:cfa:478603 NextBio:20853918 Uniprot:E2RFC9
Length = 156
Score = 124 (48.7 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+ NLS T+E + +L + G K+ + DK GF ++ + ++ADA A++Y+NG
Sbjct: 44 VGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING 103
Query: 230 YGYDHLILSVDW 241
D I+ DW
Sbjct: 104 TRLDDRIIRTDW 115
>UNIPROTKB|P52298 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0006408 "snRNA export
from nucleus" evidence=ISS;NAS] [GO:0000340 "RNA 7-methylguanosine
cap binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IMP;IDA;TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IDA;TAS] [GO:0005845
"mRNA cap binding complex" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0006446 "regulation of translational
initiation" evidence=IDA] [GO:0046833 "positive regulation of RNA
export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0000339 "RNA cap
binding" evidence=NAS] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=IDA] [GO:0000387 "spliceosomal snRNP
assembly" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS]
[GO:0050434 "positive regulation of viral transcription"
evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0016032 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006368 GO:GO:0006406
GO:GO:0031047 GO:GO:0005845 GO:GO:0000340 GO:GO:0000387
GO:GO:0034660 EMBL:CH471191 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0006370 GO:GO:0050434 GO:GO:0045292 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 PDB:3FEX PDB:3FEY PDBsum:3FEX
PDBsum:3FEY GO:GO:0008334 HOGENOM:HOG000217589 HOVERGEN:HBG052581
PANTHER:PTHR18847 PDB:1H2T PDB:1H2U PDB:1H2V PDB:1H6K PDB:1N52
PDB:1N54 PDBsum:1H2T PDBsum:1H2U PDBsum:1H2V PDBsum:1H6K
PDBsum:1N52 PDBsum:1N54 KO:K12883 CTD:22916 OMA:RQDYDPA
GO:GO:0046833 GO:GO:0006408 EMBL:X84157 EMBL:D59253 EMBL:AK297506
EMBL:AK315903 EMBL:AK316601 EMBL:AY644767 EMBL:BT006842
EMBL:BC001255 IPI:IPI00183500 IPI:IPI00927860 PIR:I37222 PIR:S60109
RefSeq:NP_001036005.1 RefSeq:NP_031388.2 UniGene:Hs.591671
DisProt:DP00393 ProteinModelPortal:P52298 SMR:P52298 DIP:DIP-33246N
IntAct:P52298 MINT:MINT-248711 STRING:P52298 PhosphoSite:P52298
DMDM:1705651 PaxDb:P52298 PRIDE:P52298 DNASU:22916
Ensembl:ENST00000321256 Ensembl:ENST00000452404 GeneID:22916
KEGG:hsa:22916 UCSC:uc003fxb.1 UCSC:uc011btz.1
GeneCards:GC03M196662 HGNC:HGNC:7659 HPA:HPA044850 MIM:605133
neXtProt:NX_P52298 PharmGKB:PA31462 InParanoid:P52298
PhylomeDB:P52298 ChiTaRS:NCBP2 EvolutionaryTrace:P52298
GenomeRNAi:22916 NextBio:43603 ArrayExpress:P52298 Bgee:P52298
CleanEx:HS_NCBP2 Genevestigator:P52298 GermOnline:ENSG00000114503
Uniprot:P52298
Length = 156
Score = 124 (48.7 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+ NLS T+E + +L + G K+ + DK GF ++ + ++ADA A++Y+NG
Sbjct: 44 VGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING 103
Query: 230 YGYDHLILSVDW 241
D I+ DW
Sbjct: 104 TRLDDRIIRTDW 115
>UNIPROTKB|F2Z5Q9 [details] [associations]
symbol:NCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
PANTHER:PTHR18847 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:RQDYDPA EMBL:CU862047 RefSeq:XP_003358812.2 UniGene:Ssc.56609
ProteinModelPortal:F2Z5Q9 SMR:F2Z5Q9 PRIDE:F2Z5Q9
Ensembl:ENSSSCT00000024784 GeneID:100156513 KEGG:ssc:100156513
Uniprot:F2Z5Q9
Length = 156
Score = 124 (48.7 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+ NLS T+E + +L + G K+ + DK GF ++ + ++ADA A++Y+NG
Sbjct: 44 VGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING 103
Query: 230 YGYDHLILSVDW 241
D I+ DW
Sbjct: 104 TRLDDRIIRTDW 115
>MGI|MGI:1915342 [details] [associations]
symbol:Ncbp2 "nuclear cap binding protein subunit 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=ISO] [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005845
"mRNA cap binding complex" evidence=ISO] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1915342
GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
GO:GO:0006446 Gene3D:3.30.70.330 EMBL:CH466521 GO:GO:0031047
GO:GO:0005845 GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724
GO:GO:0006370 GO:GO:0045292 HOGENOM:HOG000217589 HOVERGEN:HBG052581
OrthoDB:EOG470TJG PANTHER:PTHR18847 KO:K12883 CTD:22916
GeneTree:ENSGT00390000003197 OMA:RQDYDPA GO:GO:0046833
GO:GO:0006408 EMBL:AK008980 EMBL:AK012659 EMBL:AK077841
EMBL:AK147027 EMBL:BC118926 IPI:IPI00132019 RefSeq:NP_080830.1
UniGene:Mm.290027 ProteinModelPortal:Q9CQ49 SMR:Q9CQ49
STRING:Q9CQ49 PhosphoSite:Q9CQ49 PaxDb:Q9CQ49 PRIDE:Q9CQ49
Ensembl:ENSMUST00000023460 GeneID:68092 KEGG:mmu:68092
UCSC:uc007yxz.2 InParanoid:Q0VF93 NextBio:326400 Bgee:Q9CQ49
CleanEx:MM_NCBP2 Genevestigator:Q9CQ49
GermOnline:ENSMUSG00000022774 Uniprot:Q9CQ49
Length = 156
Score = 124 (48.7 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+ NLS T+E + +L + G K+ + DK GF ++ + ++ADA A++Y+NG
Sbjct: 44 VGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING 103
Query: 230 YGYDHLILSVDW 241
D I+ DW
Sbjct: 104 TRLDDRIIRTDW 115
>RGD|1596188 [details] [associations]
symbol:Ncbp2 "nuclear cap binding protein subunit 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA;ISO] [GO:0000340
"RNA 7-methylguanosine cap binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005845 "mRNA cap
binding complex" evidence=ISO] [GO:0005846 "nuclear cap binding
complex" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA capping"
evidence=IEA;ISO] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0006446 "regulation of translational initiation" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO;ISS] [GO:0046833 "positive regulation of
RNA export from nucleus" evidence=ISS] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1596188 GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
GO:GO:0006446 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845
GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 GeneTree:ENSGT00390000003197
OMA:RQDYDPA GO:GO:0046833 GO:GO:0006408 EMBL:BC161994
IPI:IPI00192753 RefSeq:NP_001102995.1 RefSeq:XP_003751123.1
UniGene:Rn.204538 ProteinModelPortal:B1WC40 SMR:B1WC40
STRING:B1WC40 PhosphoSite:B1WC40 PRIDE:B1WC40
Ensembl:ENSRNOT00000002381 GeneID:100911481 GeneID:689116
KEGG:rno:100911481 KEGG:rno:689116 UCSC:RGD:1596188 CTD:80235
NextBio:737969 Genevestigator:B1WC40 Uniprot:B1WC40
Length = 156
Score = 124 (48.7 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+ NLS T+E + +L + G K+ + DK GF ++ + ++ADA A++Y+NG
Sbjct: 44 VGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING 103
Query: 230 YGYDHLILSVDW 241
D I+ DW
Sbjct: 104 TRLDDRIIRTDW 115
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 129 (50.5 bits), Expect = 8.5e-08, P = 8.5e-08
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 159 ARRNDD-TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNK 217
+R N D T + + LS+ T+E DL ++ ++GP S + + D+ G +GFA+++F+
Sbjct: 10 SRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERI 69
Query: 218 ADAAKAIQYLNGYGYDHLILSVDWS 242
D+ +A++ NG D + VD+S
Sbjct: 70 DDSKEAMERANGMELDGRRIRVDYS 94
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 129 (50.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 159 ARRNDD-TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNK 217
+R N D T + + LS+ T+E DL ++ ++GP S + + D+ G +GFA+++F+
Sbjct: 10 SRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERI 69
Query: 218 ADAAKAIQYLNGYGYDHLILSVDWS 242
D+ +A++ NG D + VD+S
Sbjct: 70 DDSKEAMERANGMELDGRRIRVDYS 94
>UNIPROTKB|E2RBE5 [details] [associations]
symbol:NCBP2L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:GFREGQQ PANTHER:PTHR18847 GeneTree:ENSGT00390000003197
EMBL:AAEX03026753 Ensembl:ENSCAFT00000028568 Uniprot:E2RBE5
Length = 163
Score = 121 (47.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D++ + + NLS T+E + +L + G +++ DK GF +I + N+ DA A
Sbjct: 39 DSSTLYVGNLSFYTTEEQIYELFSRCGDVKNVFMGLDKIKKTACGFCFIEYHNRFDAENA 98
Query: 224 IQYLNGYGYDHLILSVDW 241
+ +LNG D + DW
Sbjct: 99 MLFLNGTCLDDHTICTDW 116
>UNIPROTKB|C1BY64 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8010 "Esox lucius" [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISS] [GO:0046833
"positive regulation of RNA export from nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340 GO:GO:0051028
GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847 GO:GO:0046833
GO:GO:0006408 EMBL:BT079543 ProteinModelPortal:C1BY64
Uniprot:C1BY64
Length = 155
Score = 121 (47.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 25/91 (27%), Positives = 45/91 (49%)
Query: 151 GKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFA 210
G R E + +T + + NLS T+E + +L + G ++ + DK GF
Sbjct: 26 GNRYEQEKLLKQSNT--LYVGNLSFYTTEEQVYELFSKSGDVKRIIIGLDKVKKTACGFC 83
Query: 211 YIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241
++ + +ADA A++++NG D I+ DW
Sbjct: 84 FVEYYTRADAENAMRFVNGTRLDDRIIRTDW 114
>UNIPROTKB|P52299 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8355 "Xenopus laevis" [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISS]
[GO:0000340 "RNA 7-methylguanosine cap binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005845
"mRNA cap binding complex" evidence=ISS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISS] [GO:0006408 "snRNA
export from nucleus" evidence=IDA] [GO:0006446 "regulation of
translational initiation" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046833 "positive regulation of RNA export from
nucleus" evidence=IDA] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
GO:GO:0051028 GO:GO:0006370 GO:GO:0045292 HOVERGEN:HBG052581
PANTHER:PTHR18847 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
EMBL:BC072902 EMBL:X84788 PIR:I51602 RefSeq:NP_001167476.1
UniGene:Xl.43439 UniGene:Xl.81730 ProteinModelPortal:P52299
SMR:P52299 GeneID:100380998 KEGG:xla:100380998
Xenbase:XB-GENE-1005792 Uniprot:P52299
Length = 153
Score = 121 (47.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 24/95 (25%), Positives = 48/95 (50%)
Query: 153 RVEGYNARRNDDTTAIR------ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLC 206
R + + R+D + ++ + NLS T+E + +L + G ++ + DK
Sbjct: 18 RDQHFRGNRSDQESLLKQSCTLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTA 77
Query: 207 KGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241
GF ++ + +ADA +A++++NG D I+ DW
Sbjct: 78 CGFCFVEYYTRADAEQAMRFINGTRLDDRIVRTDW 112
>UNIPROTKB|Q6DES0 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0006408 "snRNA
export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046833 "positive regulation of RNA export from
nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
EMBL:CR761328 EMBL:BC077024 RefSeq:NP_001006879.1 UniGene:Str.170
ProteinModelPortal:Q6DES0 SMR:Q6DES0 STRING:Q6DES0 PRIDE:Q6DES0
GeneID:448671 KEGG:xtr:448671 Xenbase:XB-GENE-1005786
InParanoid:Q6DES0 Bgee:Q6DES0 Uniprot:Q6DES0
Length = 153
Score = 119 (46.9 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+ NLS T+E + +L + G K+ + DK GF ++ + + DA +A++++NG
Sbjct: 41 VGNLSFYTTEEQIHELFSKSGDVKKIVMGLDKIKKTACGFCFVEYYTRTDAEQAMRFING 100
Query: 230 YGYDHLILSVDW 241
D I+ DW
Sbjct: 101 TRLDDRIIRTDW 112
>ASPGD|ASPL0000076347 [details] [associations]
symbol:AN4505 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 EMBL:BN001303
EMBL:AACD01000078 HOGENOM:HOG000183826 KO:K12876 eggNOG:NOG246776
OrthoDB:EOG4M9523 RefSeq:XP_662109.1 ProteinModelPortal:Q5B4M5
SMR:Q5B4M5 STRING:Q5B4M5 EnsemblFungi:CADANIAT00005939
GeneID:2872307 KEGG:ani:AN4505.2 OMA:IEGWIII Uniprot:Q5B4M5
Length = 158
Score = 118 (46.6 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 29/101 (28%), Positives = 49/101 (48%)
Query: 142 PPSLREGPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDK 201
P + G + +G A R+ + I +N+ SE D+ DL ++G L+ D+
Sbjct: 18 PQTSNSGTDARTHDGAVAVRSIEGWIIIATNIHEEASEEDVTDLFAEYGEIKNFSLNLDR 77
Query: 202 TNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242
G KG+A I + +AA+AI+ LNG + VD++
Sbjct: 78 RTGYVKGYALIEYSTLPEAAEAIKELNGTKLLDQTIEVDYA 118
>UNIPROTKB|F1NIR6 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0005846 "nuclear cap binding complex" evidence=IEA] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 PANTHER:PTHR18847
GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AADN02020536
IPI:IPI00597191 ProteinModelPortal:F1NIR6
Ensembl:ENSGALT00000011075 Uniprot:F1NIR6
Length = 158
Score = 118 (46.6 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+ NLS T+E + +L + G K+ + DK GF ++ + + DA A++Y+NG
Sbjct: 46 VGNLSFYTTEEQIHELFGKSGDIKKIIMGLDKVKKTACGFCFVEYYARGDAENAMRYING 105
Query: 230 YGYDHLILSVDW 241
D I+ DW
Sbjct: 106 TRLDDRIIRTDW 117
>ZFIN|ZDB-GENE-020419-31 [details] [associations]
symbol:ncbp2 "nuclear cap binding protein subunit 2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA;ISS]
[GO:0005846 "nuclear cap binding complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
[GO:0046833 "positive regulation of RNA export from nucleus"
evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap binding"
evidence=ISS] [GO:0006408 "snRNA export from nucleus" evidence=ISS]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA
capping" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-020419-31
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:RQDYDPA GO:GO:0046833 GO:GO:0006408 EMBL:AY099530 EMBL:AL953867
EMBL:BC083529 IPI:IPI00487113 RefSeq:NP_775356.1 UniGene:Dr.83993
ProteinModelPortal:Q8JGR6 SMR:Q8JGR6 STRING:Q8JGR6
Ensembl:ENSDART00000008365 GeneID:192325 KEGG:dre:192325
InParanoid:Q8JGR6 NextBio:20797161 Bgee:Q8JGR6 Uniprot:Q8JGR6
Length = 155
Score = 118 (46.6 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 25/91 (27%), Positives = 44/91 (48%)
Query: 151 GKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFA 210
G R E + T + + NLS T+E + +L + G ++ + DK GF
Sbjct: 26 GNRYEQEKLLKQSAT--LYVGNLSFYTTEEQVHELFAKCGDVKRIIIGLDKIKKTACGFC 83
Query: 211 YIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241
++ + +ADA A++++NG D I+ DW
Sbjct: 84 FVEYYTRADAENAMRFVNGTRLDDRIIRTDW 114
>UNIPROTKB|F1NPM7 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
Length = 277
Score = 133 (51.9 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 29/100 (29%), Positives = 54/100 (54%)
Query: 144 SLREGPGGKRVEGYNARRNDD-TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKT 202
S P R +R N D T + + LS+ T+E DL ++ ++GP + + + D+
Sbjct: 98 SRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQR 157
Query: 203 NGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242
G +GFA+++F+ D+ +A+++ NG D + VD+S
Sbjct: 158 TGRSRGFAFVYFERIDDSKEAMEHANGMELDGRRIRVDYS 197
>UNIPROTKB|E2R4B2 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
Length = 278
Score = 132 (51.5 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 30/100 (30%), Positives = 53/100 (53%)
Query: 144 SLREGPGGKRVEGYNARRNDD-TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKT 202
S P R +R N D T + + LS+ T+E DL ++ ++GP S + + D+
Sbjct: 96 SRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQR 155
Query: 203 NGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242
G +GFA+++F+ D+ +A++ NG D + VD+S
Sbjct: 156 TGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYS 195
>UNIPROTKB|Q06AA6 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
Uniprot:Q06AA6
Length = 279
Score = 132 (51.5 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 30/100 (30%), Positives = 53/100 (53%)
Query: 144 SLREGPGGKRVEGYNARRNDD-TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKT 202
S P R +R N D T + + LS+ T+E DL ++ ++GP S + + D+
Sbjct: 96 SRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQR 155
Query: 203 NGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242
G +GFA+++F+ D+ +A++ NG D + VD+S
Sbjct: 156 TGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYS 195
>UNIPROTKB|Q2KJ71 [details] [associations]
symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
Length = 281
Score = 132 (51.5 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 30/100 (30%), Positives = 53/100 (53%)
Query: 144 SLREGPGGKRVEGYNARRNDD-TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKT 202
S P R +R N D T + + LS+ T+E DL ++ ++GP S + + D+
Sbjct: 96 SRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQR 155
Query: 203 NGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242
G +GFA+++F+ D+ +A++ NG D + VD+S
Sbjct: 156 TGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYS 195
>MGI|MGI:1933972 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
CleanEx:MM_TRA2A Genevestigator:Q6PFR5
GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
Length = 281
Score = 132 (51.5 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 30/100 (30%), Positives = 53/100 (53%)
Query: 144 SLREGPGGKRVEGYNARRNDD-TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKT 202
S P R +R N D T + + LS+ T+E DL ++ ++GP S + + D+
Sbjct: 94 SRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQR 153
Query: 203 NGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242
G +GFA+++F+ D+ +A++ NG D + VD+S
Sbjct: 154 TGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYS 193
>UNIPROTKB|Q13595 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
GermOnline:ENSG00000164548 Uniprot:Q13595
Length = 282
Score = 132 (51.5 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 30/100 (30%), Positives = 53/100 (53%)
Query: 144 SLREGPGGKRVEGYNARRNDD-TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKT 202
S P R +R N D T + + LS+ T+E DL ++ ++GP S + + D+
Sbjct: 96 SRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQR 155
Query: 203 NGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242
G +GFA+++F+ D+ +A++ NG D + VD+S
Sbjct: 156 TGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYS 195
>RGD|1562563 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
Uniprot:B1WC25
Length = 282
Score = 132 (51.5 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 30/100 (30%), Positives = 53/100 (53%)
Query: 144 SLREGPGGKRVEGYNARRNDD-TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKT 202
S P R +R N D T + + LS+ T+E DL ++ ++GP S + + D+
Sbjct: 94 SRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQR 153
Query: 203 NGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242
G +GFA+++F+ D+ +A++ NG D + VD+S
Sbjct: 154 TGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYS 193
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 115 (45.5 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+ L+ NT E LED FGP S++ + +D+ +GF +I F N A+ A++ +NG
Sbjct: 10 VGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNG 69
Query: 230 YGYDHLILSVD 240
D + VD
Sbjct: 70 ESLDGRQIRVD 80
>UNIPROTKB|C0H859 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8030 "Salmo salar" [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISS] [GO:0046833
"positive regulation of RNA export from nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340 GO:GO:0051028
GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847 GO:GO:0046833
GO:GO:0006408 EMBL:BT043732 EMBL:BT058515 EMBL:BT060223
UniGene:Ssa.8109 ProteinModelPortal:C0H859 Uniprot:C0H859
Length = 155
Score = 115 (45.5 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 24/91 (26%), Positives = 44/91 (48%)
Query: 151 GKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFA 210
G R E + +T + + NLS T+E + +L + G ++ + DK GF
Sbjct: 26 GNRYEQEKLLKQANT--LYVGNLSFYTTEEQVYELFSKSGDVKRIIIGLDKVKKTACGFC 83
Query: 211 YIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241
++ + + DA A++++NG D I+ DW
Sbjct: 84 FVEYYTRTDAENAMRFVNGTRLDDRIIRTDW 114
>DICTYBASE|DDB_G0286007 [details] [associations]
symbol:rbm8A "RNA-binding motif protein 8A"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0286007
GenomeReviews:CM000153_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12876 EMBL:AAFI02000084 eggNOG:NOG246776
RefSeq:XP_637941.1 ProteinModelPortal:Q54ME8 SMR:Q54ME8
STRING:Q54ME8 EnsemblProtists:DDB0233616 GeneID:8625394
KEGG:ddi:DDB_G0286007 InParanoid:Q54ME8 OMA:SERYSGK Uniprot:Q54ME8
Length = 187
Score = 125 (49.1 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
I + N+ E DL D+ ++G ++L+ D+ G KG+A I ++ +++A AI+
Sbjct: 73 IFVRNIQEEVQEPDLMDIFAEYGQIKNIHLNIDRRTGFTKGYALIEYEKRSEAEDAIKNG 132
Query: 228 NGYGYDHLILSVDWS 242
+GY L LSVDW+
Sbjct: 133 SGYELAGLKLSVDWA 147
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 114 (45.2 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+ L+ NT E LED FGP S++ + +D+ +GF +I F N A+ A++ +NG
Sbjct: 10 VGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNG 69
Query: 230 YGYDHLILSVD 240
D + VD
Sbjct: 70 ESLDGRQIRVD 80
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 114 (45.2 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+ L+ NT E LED FGP S++ + +D+ +GF +I F N A+ A++ +NG
Sbjct: 10 VGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNG 69
Query: 230 YGYDHLILSVD 240
D + VD
Sbjct: 70 ESLDGRQIRVD 80
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 123 (48.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225
T + +S LS T+E+ L D +QFG M + DK KGFA++ ++ + +A KAIQ
Sbjct: 77 TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136
Query: 226 YLNGYGYDHLILSVDWSKS 244
++G D ++ V+ +K+
Sbjct: 137 GMHGKFLDGRVIFVEEAKT 155
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 113 (44.8 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+ L+ NT+E LED FGP S++ + +D+ +GF +I F N A+ A++ +NG
Sbjct: 10 LGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPMNG 69
Query: 230 YGYDHLILSVD 240
D + VD
Sbjct: 70 KSLDGRQIRVD 80
>UNIPROTKB|B5G279 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:59729 "Taeniopygia guttata" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047
GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 EMBL:DQ215986 RefSeq:NP_001232044.1
UniGene:Tgu.10927 ProteinModelPortal:B5G279 STRING:B5G279
GeneID:100190722 KEGG:tgu:100190722 Uniprot:B5G279
Length = 168
Score = 119 (46.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAI 224
++ + + NLS T+E +++L + G ++ + DK GF ++ + +ADA A+
Sbjct: 42 SSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAEHAM 101
Query: 225 QYLNGYGYDHLILSVDW 241
+++NG D I+ DW
Sbjct: 102 RFINGTRLDDRIIRTDW 118
>TAIR|locus:2831834 [details] [associations]
symbol:AT5G03580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00525082 RefSeq:NP_195978.1 UniGene:At.65484
ProteinModelPortal:F4KGN7 SMR:F4KGN7 PRIDE:F4KGN7
EnsemblPlants:AT5G03580.1 GeneID:831785 KEGG:ath:AT5G03580
OMA:DNHGSSS PhylomeDB:F4KGN7 Uniprot:F4KGN7
Length = 101
Score = 89 (36.4 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225
T++ I+NL SE L + FG + L++D G +GFA+I F++ A +A+
Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKD-FRGESRGFAFIEFESADSAGRAML 75
Query: 226 YLNGYGYDHLILSV 239
+++G IL V
Sbjct: 76 HMDGRLIGQKILCV 89
Score = 39 (18.8 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 6/17 (35%), Positives = 14/17 (82%)
Query: 87 HFTNNCPFKDSALFLAD 103
H +++CP K ++L++A+
Sbjct: 7 HGSSSCPRKFTSLYIAN 23
>GENEDB_PFALCIPARUM|PF14_0057 [details] [associations]
symbol:PF14_0057 "RNA binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
Uniprot:Q8IM34
Length = 107
Score = 111 (44.1 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 24/92 (26%), Positives = 51/92 (55%)
Query: 158 NARRNDDTTA-------IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFA 210
N +ND+ A I I+N+ ++ ++++ ++FG ++L+ D+ G KG+A
Sbjct: 8 NVLKNDEVPAKSVEGWIIIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYA 67
Query: 211 YIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242
++ ++N DA +AI ++G + + VDW+
Sbjct: 68 FLEYENFVDAKRAIDEMDGTMLLNQEIHVDWA 99
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 111 (44.1 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225
T++++ NL+ TS + L + +++G +Y+ RD+ +GFA++ F +K DA A+
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 226 YLNGYGYDHLILSVDWSK 243
++G D L V ++
Sbjct: 74 AMDGAVLDGRELRVQMAR 91
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 111 (44.1 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225
T++++ NL+ TS + L + +++G +Y+ RD+ +GFA++ F +K DA A+
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 226 YLNGYGYDHLILSVDWSK 243
++G D L V ++
Sbjct: 74 AMDGAVLDGRELRVQMAR 91
>UNIPROTKB|Q8IM34 [details] [associations]
symbol:PF14_0057 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
Uniprot:Q8IM34
Length = 107
Score = 111 (44.1 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 24/92 (26%), Positives = 51/92 (55%)
Query: 158 NARRNDDTTA-------IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFA 210
N +ND+ A I I+N+ ++ ++++ ++FG ++L+ D+ G KG+A
Sbjct: 8 NVLKNDEVPAKSVEGWIIIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYA 67
Query: 211 YIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242
++ ++N DA +AI ++G + + VDW+
Sbjct: 68 FLEYENFVDAKRAIDEMDGTMLLNQEIHVDWA 99
>TAIR|locus:2086804 [details] [associations]
symbol:SCL30A "SC35-like splicing factor 30A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IGI;RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 EMBL:AP002038 HSSP:Q61474 HOGENOM:HOG000276233
KO:K12900 EMBL:AF370268 EMBL:AY063026 IPI:IPI00526651
RefSeq:NP_187966.1 UniGene:At.23948 ProteinModelPortal:Q9LHP2
SMR:Q9LHP2 STRING:Q9LHP2 PRIDE:Q9LHP2 EnsemblPlants:AT3G13570.1
GeneID:820559 KEGG:ath:AT3G13570 TAIR:At3g13570 InParanoid:Q9LHP2
OMA:KERSYSR PhylomeDB:Q9LHP2 ProtClustDB:CLSN2723371
ArrayExpress:Q9LHP2 Genevestigator:Q9LHP2 Uniprot:Q9LHP2
Length = 262
Score = 127 (49.8 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 159 ARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKA 218
+R +D T++ + NL + + DL +QFGP +YL RD G +GF +I F + A
Sbjct: 30 SRDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPA 89
Query: 219 DAAKAIQYLNGY 230
DAA+A ++GY
Sbjct: 90 DAAEAKHQMDGY 101
>UNIPROTKB|Q5ZKR5 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:YRTDYDV EMBL:AJ720019 IPI:IPI00603887 RefSeq:NP_001006430.1
UniGene:Gga.6356 ProteinModelPortal:Q5ZKR5 SMR:Q5ZKR5
Ensembl:ENSGALT00000009239 GeneID:422214 KEGG:gga:422214
InParanoid:Q5ZKR5 NextBio:20824880 Uniprot:Q5ZKR5
Length = 168
Score = 118 (46.6 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAI 224
++ + + NLS T+E +++L + G ++ + DK GF ++ + +ADA A+
Sbjct: 42 SSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAEHAM 101
Query: 225 QYLNGYGYDHLILSVDW 241
+++NG D I+ DW
Sbjct: 102 RFINGTRLDDRIVRTDW 118
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 132 (51.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225
T I + NL V+ E L+DL QFG T + + RD +NG +GF +I+F+ +A KA+
Sbjct: 191 TNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRD-SNGQSRGFGFINFEKHEEAQKAVD 249
Query: 226 YLNG 229
++NG
Sbjct: 250 HMNG 253
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 115 (45.5 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+ L+ NT E LED FGP S++ + +D+ +GF +I F N A+ A++ +NG
Sbjct: 10 VGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNG 69
Query: 230 YGYDHLILSVD 240
D + VD
Sbjct: 70 ESLDGRQIRVD 80
>SGD|S000001444 [details] [associations]
symbol:IST3 "Component of the U2 snRNP" species:4932
"Saccharomyces cerevisiae" [GO:0000245 "spliceosomal complex
assembly" evidence=IMP] [GO:0000349 "generation of catalytic
spliceosome for first transesterification step" evidence=IMP]
[GO:0006406 "mRNA export from nucleus" evidence=IMP] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000384 "first spliceosomal
transesterification activity" evidence=IMP;IDA] [GO:0005686 "U2
snRNP" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA;IPI] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0070274 "RES complex" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001444 GO:GO:0005737 GO:GO:0000166 EMBL:BK006942
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0006406
EMBL:X79743 EMBL:Z38062 GO:GO:0000349 GO:GO:0000245 GO:GO:0070274
GO:GO:0005686 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
OrthoDB:EOG441TN4 EMBL:AY558081 PIR:S48439 RefSeq:NP_012270.1
ProteinModelPortal:P40565 SMR:P40565 DIP:DIP-2076N IntAct:P40565
MINT:MINT-389778 STRING:P40565 PaxDb:P40565 PeptideAtlas:P40565
EnsemblFungi:YIR005W GeneID:854821 KEGG:sce:YIR005W CYGD:YIR005w
GeneTree:ENSGT00600000084414 OMA:YGVPVDV NextBio:977669
Genevestigator:P40565 GermOnline:YIR005W Uniprot:P40565
Length = 148
Score = 109 (43.4 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D I I NL+ +E D+ + ++G + LSRD+ G +GFAY+ ++++ A
Sbjct: 29 DNAYIYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILA 88
Query: 224 IQYLNGYGYDHLILSVD 240
+ LNG+ L +D
Sbjct: 89 VDNLNGFKIGGRALKID 105
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 113 (44.8 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+ L+ NT E LED FGP S++ + +D+ +GF +I F N A+ A++ +NG
Sbjct: 10 VGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNG 69
Query: 230 YGYDHLILSVD 240
D + VD
Sbjct: 70 ESLDGRQIRVD 80
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 131 (51.2 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 26/86 (30%), Positives = 51/86 (59%)
Query: 148 GPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCK 207
GP +R E + T + + NL+ +T+++DL++ ++G + + +D G K
Sbjct: 197 GPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSK 255
Query: 208 GFAYIHFKNKADAAKAIQYLNGYGYD 233
GF +++F+N DAA+A++ LNG+ +D
Sbjct: 256 GFGFVNFENADDAARAVESLNGHKFD 281
>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
symbol:tra2a "transformer-2 alpha" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
Length = 297
Score = 126 (49.4 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 27/86 (31%), Positives = 51/86 (59%)
Query: 158 NARRNDD-TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKN 216
+AR N D T + + LS+ T+E DL ++ ++G + + + D+ G +GFA+++F++
Sbjct: 126 DARANPDPNTCLGVFGLSLYTTERDLREVFSRYGSLAGVNVVYDQRTGRSRGFAFVYFEH 185
Query: 217 KADAAKAIQYLNGYGYDHLILSVDWS 242
DA +A++ NG D + VD+S
Sbjct: 186 IDDAKEAMERANGMELDGRRIRVDYS 211
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 108 (43.1 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 167 AIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQY 226
++ + N T+E+DL + Q G S + + D+ G +GFA++ F +A A +A+
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 227 LNGYGYDHLILSVDWSKSTN 246
NG ++ L V+ +++ N
Sbjct: 65 FNGVDFNGRALRVNLAQNRN 84
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 108 (43.1 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 167 AIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQY 226
++ + N T+E+DL + Q G S + + D+ G +GFA++ F +A A +A+
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQ 64
Query: 227 LNGYGYDHLILSVDWSKSTN 246
NG ++ L V+ +++ N
Sbjct: 65 FNGVDFNGRALRVNLAQNRN 84
>UNIPROTKB|E1BLD4 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074976
EMBL:DAAA02011496 IPI:IPI00697406 ProteinModelPortal:E1BLD4
Ensembl:ENSBTAT00000022610 OMA:KSMNMKE Uniprot:E1BLD4
Length = 756
Score = 131 (51.2 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 32/96 (33%), Positives = 53/96 (55%)
Query: 147 EGPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLC 206
E P K ++ A+ D + I NLS SE+DL+ + QFG ++ + R K +G
Sbjct: 96 ESPE-KELKPKKAKVADKKARLIIRNLSFKCSEDDLKTVFSQFGTILEVNIPR-KPDGKM 153
Query: 207 KGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242
+GFA++ FKN +A KA++ +N ++VDW+
Sbjct: 154 RGFAFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWA 189
>TAIR|locus:2144945 [details] [associations]
symbol:SCL28 "SC35-like splicing factor 28" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0007059 "chromosome segregation" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007129 "synapsis"
evidence=RCA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0042138 "meiotic DNA double-strand break
formation" evidence=RCA] [GO:0045132 "meiotic chromosome
segregation" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 KO:K12900 EMBL:DQ446966 IPI:IPI00533357
RefSeq:NP_197382.3 UniGene:At.10034 ProteinModelPortal:Q1PDV2
SMR:Q1PDV2 STRING:Q1PDV2 PRIDE:Q1PDV2 EnsemblPlants:AT5G18810.1
GeneID:831999 KEGG:ath:AT5G18810 TAIR:At5g18810 InParanoid:Q1PDV2
OMA:GFVKYRY PhylomeDB:Q1PDV2 Genevestigator:Q1PDV2 Uniprot:Q1PDV2
Length = 236
Score = 123 (48.4 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 27/90 (30%), Positives = 50/90 (55%)
Query: 142 PPSLREGPGGKRVEGYNARRNDDTTA---IRISNLSVNTSENDLEDLVKQFGPTSKMYLS 198
PP R+G R+ + R+ +++ + I NL ++ NDL D ++FGP +YL
Sbjct: 20 PPRERKGYDDNRLRERPSSRDHESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLP 79
Query: 199 RDKTNGLCKGFAYIHFKNKADAAKAIQYLN 228
R+ G +GF ++ ++ DAA+A++ +N
Sbjct: 80 RNYYTGEPRGFGFVKYRYAEDAAEAMKRMN 109
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 107 (42.7 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + + LS +T+E LE + ++G S++ + +D+ +GF ++ F+N DA A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 224 IQYLNGYGYDHLILSVDWS-KSTN 246
+ +NG D + VD + KS++
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSD 87
>TAIR|locus:2173338 [details] [associations]
symbol:SC35 "ortholog of human splicing factor SC35"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AB008268 HSSP:P19339 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276233 KO:K12891 OMA:DHRRRTR EMBL:AY063890
EMBL:AY122917 EMBL:AY127004 EMBL:AY143851 IPI:IPI00549029
RefSeq:NP_201225.1 RefSeq:NP_851261.1 UniGene:At.23698
UniGene:At.49215 ProteinModelPortal:Q9FMG4 SMR:Q9FMG4 STRING:Q9FMG4
PaxDb:Q9FMG4 PRIDE:Q9FMG4 EnsemblPlants:AT5G64200.1
EnsemblPlants:AT5G64200.2 GeneID:836541 KEGG:ath:AT5G64200
TAIR:At5g64200 InParanoid:Q9FMG4 ProtClustDB:CLSN2914827
ArrayExpress:Q9FMG4 Genevestigator:Q9FMG4 Uniprot:Q9FMG4
Length = 303
Score = 125 (49.1 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 24/80 (30%), Positives = 49/80 (61%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
DT ++ + N++ T+ +DL L ++G +++ RD+ G +GFA++ +K K +A KA
Sbjct: 14 DTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKA 73
Query: 224 IQYLNGYGYDHLILSVDWSK 243
++ L+G D ++V ++K
Sbjct: 74 VERLDGRVVDGREITVQFAK 93
>UNIPROTKB|F1RXK2 [details] [associations]
symbol:NCBP2L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:GFREGQQ PANTHER:PTHR18847 GeneTree:ENSGT00390000003197
EMBL:FP245415 ProteinModelPortal:F1RXK2 Ensembl:ENSSSCT00000013736
Uniprot:F1RXK2
Length = 156
Score = 112 (44.5 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
+++ + + NLS+ T+E + +L + G +++ D GF ++ + +ADA A
Sbjct: 37 ESSTLYVENLSIYTTEEQIFELFSRCGDVKNVFMGLDNIKKTACGFCFVEYHLRADAENA 96
Query: 224 IQYLNGYGYDHLILSVDW 241
+++LNG D I+ W
Sbjct: 97 MRFLNGTLLDDRIIHTKW 114
>POMBASE|SPBC146.07 [details] [associations]
symbol:prp2 "U2AF large subunit (U2AF-59)" species:4896
"Schizosaccharomyces pombe" [GO:0000243 "commitment complex"
evidence=IDA] [GO:0000348 "mRNA branch site recognition"
evidence=ISS] [GO:0000349 "generation of catalytic spliceosome for
first transesterification step" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=TAS] [GO:0030515 "snoRNA binding"
evidence=TAS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR006529
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC146.07 GO:GO:0000166 EMBL:CU329671 GO:GO:0030515
GO:GO:0003729 Gene3D:3.30.70.330 GenomeReviews:CU329671_GR
GO:GO:0000243 GO:GO:0000349 GO:GO:0005686 GO:GO:0045292
OrthoDB:EOG44XNS9 GO:GO:0000348 eggNOG:NOG298004 KO:K12837
TIGRFAMs:TIGR01642 OMA:TQMGGLP EMBL:L22577 EMBL:AB027985 PIR:A48250
RefSeq:NP_595396.1 ProteinModelPortal:P36629 IntAct:P36629
STRING:P36629 PRIDE:P36629 EnsemblFungi:SPBC146.07.1 GeneID:2539645
KEGG:spo:SPBC146.07 NextBio:20800799 Uniprot:P36629
Length = 517
Score = 128 (50.1 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 140 YVPPSLREGPGGKRVEGYNARRN--DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYL 197
Y+ P + KR + Y A+ + D I ISNL +N E+ + +L+K FG L
Sbjct: 283 YIVPQITPEVSQKRSDDY-AKNDVLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQL 341
Query: 198 SRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
++ +G KGF + FKN +DA AI L+G
Sbjct: 342 IKNIADGSSKGFCFCEFKNPSDAEVAISGLDG 373
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 129 (50.5 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 32/98 (32%), Positives = 53/98 (54%)
Query: 139 IYVPP---SLREGPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKM 195
+YV P L+ P G++V+ N + + NLS + S+ +L + +FG T+
Sbjct: 203 VYVGPFVHKLQRDPSGEKVKFTN---------VYVKNLSESLSDEELNKVFGEFGVTTSC 253
Query: 196 YLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYD 233
+ RD G KGF +++F+N DAA+A+ LNG +D
Sbjct: 254 VIMRDG-EGKSKGFGFVNFENSDDAARAVDALNGKTFD 290
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 106 (42.4 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + + LS +T+E LE + ++G S++ + +D+ +GF ++ F+N DA A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 224 IQYLNGYGYDHLILSVD 240
+ +NG D + VD
Sbjct: 64 MMAMNGKSVDGRQIRVD 80
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 106 (42.4 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+S LS T++ L L FG + L RD KGF +I F ++ DA KA++ L+G
Sbjct: 11 VSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDG 70
Query: 230 YGYDHLILSVDWSKSTNQ 247
D ++ V+ +K+ +
Sbjct: 71 KIVDGRLIFVEVAKNAEE 88
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 118 (46.6 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + I LS +T+E LED ++G + ++++R++ +GF ++ F+N DA A
Sbjct: 3 DEGKLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDA 62
Query: 224 IQYLNGYGYDHLILSVD 240
++ +NG D + VD
Sbjct: 63 LEGMNGKSVDGRTIRVD 79
>ZFIN|ZDB-GENE-040426-1094 [details] [associations]
symbol:tra2b "transformer 2 beta homolog
(Drosophila)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1094
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q9V535
HOVERGEN:HBG107480 KO:K12897 CTD:6434 EMBL:BC049051 IPI:IPI00493400
RefSeq:NP_957491.1 UniGene:Dr.9221 ProteinModelPortal:Q7ZUG9
SMR:Q7ZUG9 STRING:Q7ZUG9 PRIDE:Q7ZUG9 GeneID:394172 KEGG:dre:394172
InParanoid:Q7ZUG9 NextBio:20815117 ArrayExpress:Q7ZUG9 Bgee:Q7ZUG9
Uniprot:Q7ZUG9
Length = 278
Score = 122 (48.0 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 28/95 (29%), Positives = 50/95 (52%)
Query: 149 PGGKRVEGYNARRNDDTTA-IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCK 207
P R R N D + + LS+ T+E DL ++ ++GP S + + D+ + +
Sbjct: 105 PMSNRRRHIGDRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPLSDVCIVYDQQSRRSR 164
Query: 208 GFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242
GFA ++F+N+ D+ +A + NG D + VD+S
Sbjct: 165 GFALVYFENREDSKEAKERANGMELDGRRIRVDYS 199
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 125 (49.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
I + NL+ +T EN L L FG + + RD + CKGF ++ N +A AIQ L
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 228 NGYGYDHLILSVDWSKSTNQ 247
NGY + +L V + + N+
Sbjct: 423 NGYTLGNRVLQVSFKTNKNK 442
>DICTYBASE|DDB_G0276725 [details] [associations]
symbol:DDB_G0276725 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0276725 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000019 eggNOG:COG0724
RefSeq:XP_643007.1 ProteinModelPortal:Q550X7
EnsemblProtists:DDB0202911 GeneID:8620667 KEGG:ddi:DDB_G0276725
InParanoid:Q550X7 Uniprot:Q550X7
Length = 78
Score = 104 (41.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225
T+I + L+ + S+ L+ +G + + K G+ +G+AYI + NK DA KAI
Sbjct: 4 TSIYVGGLNSHISKEILKTKFSVYGEIQSLVFVKGKETGISEGYAYIEYNNKEDAVKAID 63
Query: 226 YLNGYGYD--HLIL 237
LN ++ HL L
Sbjct: 64 DLNDQPFEGNHLEL 77
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 110 (43.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+ L+ NT E LED FGP S++ + +D+ +GF +I F N A+ ++ +NG
Sbjct: 10 VGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNG 69
Query: 230 YGYDHLILSVD 240
D + VD
Sbjct: 70 ESLDGRQIRVD 80
>UNIPROTKB|I3LBN9 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
GeneTree:ENSGT00700000104309 OMA:YDDREYY Ensembl:ENSSSCT00000025696
Uniprot:I3LBN9
Length = 280
Score = 121 (47.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 25/85 (29%), Positives = 48/85 (56%)
Query: 158 NARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNK 217
N D + + LS+ T+E+DL ++ ++GP + + + D+ + +GFA+++F+N
Sbjct: 102 NRANPDPNCCLGVFGLSLYTTESDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 161
Query: 218 ADAAKAIQYLNGYGYDHLILSVDWS 242
DA +A + NG D + VD+S
Sbjct: 162 DDAKEAKERANGMELDGRRIRVDFS 186
>DICTYBASE|DDB_G0277353 [details] [associations]
symbol:DDB_G0277353 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0277353 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000019 eggNOG:NOG321849
RefSeq:XP_642758.1 ProteinModelPortal:Q54ZV8
EnsemblProtists:DDB0232331 GeneID:8620947 KEGG:ddi:DDB_G0277353
InParanoid:Q54ZV8 OMA:FNGTHLD Uniprot:Q54ZV8
Length = 633
Score = 126 (49.4 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 33/99 (33%), Positives = 51/99 (51%)
Query: 148 GPGGK----RVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTN 203
G GG+ R E + + + I + NL + + LEDL +FGP + + DK N
Sbjct: 277 GSGGRFQRPRREPVDPAEKEKSKCIFVGNLPYHFQKQHLEDLFGKFGPLVNINVGFDKRN 336
Query: 204 GLCKGFAYIHFKNKADAAKAI-QYLNGYGYDHLILSVDW 241
G KG+A++ F+NK DA A +YL ++ L +DW
Sbjct: 337 GQSKGYAFVEFENKPDADAAFNEYLVKE-VENRKLRLDW 374
>UNIPROTKB|Q9DDU8 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
Uniprot:Q9DDU8
Length = 289
Score = 121 (47.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 25/85 (29%), Positives = 47/85 (55%)
Query: 158 NARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNK 217
N D + + LS+ T+E DL ++ ++GP + + + D+ + +GFA+++F+N
Sbjct: 110 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 169
Query: 218 ADAAKAIQYLNGYGYDHLILSVDWS 242
DA +A + NG D + VD+S
Sbjct: 170 EDAKEAKERANGMELDGRRIRVDFS 194
>UNIPROTKB|F2Z2U1 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010141 HGNC:HGNC:9912
HGNC:HGNC:23914 EMBL:AC007322 HGNC:HGNC:23915 HGNC:HGNC:23916
IPI:IPI00916472 SMR:F2Z2U1 Ensembl:ENST00000358944
Ensembl:ENST00000361046 Ensembl:ENST00000382639
Ensembl:ENST00000382653 Uniprot:F2Z2U1
Length = 81
Score = 103 (41.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
I L+ T+E L+ + + GP S++ L +D+T+ +GFA+I F+N ADA A + +NG
Sbjct: 12 IGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAKDMNG 70
Query: 230 -YGYDHLILS 238
D L++S
Sbjct: 71 KMMVDTLLIS 80
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 103 (41.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 23/80 (28%), Positives = 43/80 (53%)
Query: 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAI 224
++ + + +S +++E L Q+G K+ + DK KGFAY+ F +K +A KA+
Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Query: 225 QYLNGYGYDHLILSVDWSKS 244
LN D ++ +D +K+
Sbjct: 80 LELNAQLVDGRVVILDTTKA 99
>UNIPROTKB|A2SW84 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:119488 "Siniperca chuatsi" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0006408 "snRNA
export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046833 "positive regulation of RNA export from
nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847
GO:GO:0046833 GO:GO:0006408 EMBL:DQ359156 ProteinModelPortal:A2SW84
SMR:A2SW84 Uniprot:A2SW84
Length = 165
Score = 112 (44.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+ NLS T+E + +L + G ++ + DK GF ++ + +A A A++++NG
Sbjct: 43 VGNLSFYTTEEQVHELFSKSGDVKRIIIGLDKVKKTACGFCFVEYYTRAGAENAMRFING 102
Query: 230 YGYDHLILSVDW 241
D I+ DW
Sbjct: 103 TRLDDRIIRADW 114
>FB|FBgn0022943 [details] [associations]
symbol:Cbp20 "cap binding protein 20" species:7227
"Drosophila melanogaster" [GO:0000339 "RNA cap binding"
evidence=ISS] [GO:0005846 "nuclear cap binding complex"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0045071 "negative
regulation of viral genome replication" evidence=IMP] [GO:0035195
"gene silencing by miRNA" evidence=IMP] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005875 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045071 GO:GO:0030422 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0006370 GO:GO:0031053
GO:GO:0000339 PANTHER:PTHR18847 HSSP:P52298 KO:K12883
GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AJ238969
EMBL:AY070578 RefSeq:NP_524396.1 UniGene:Dm.2405
ProteinModelPortal:Q9V3L6 SMR:Q9V3L6 IntAct:Q9V3L6 MINT:MINT-987792
STRING:Q9V3L6 PaxDb:Q9V3L6 PRIDE:Q9V3L6 EnsemblMetazoa:FBtr0083551
GeneID:42166 KEGG:dme:Dmel_CG12357 UCSC:CG12357-RA CTD:42166
FlyBase:FBgn0022943 InParanoid:Q9V3L6 OrthoDB:EOG4K0P4N
PhylomeDB:Q9V3L6 GenomeRNAi:42166 NextBio:827474 Bgee:Q9V3L6
Uniprot:Q9V3L6
Length = 154
Score = 109 (43.4 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 151 GKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFA 210
G R E + R D+ + + NLS T+E + +L + G + + DK GF
Sbjct: 17 GSRSEQERSLR--DSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFC 74
Query: 211 YIHFKNKADAAKAIQYLNGYGYDHLILSVDW 241
++ + +++A A++++NG D ++ VDW
Sbjct: 75 FVEYYVRSEAEAAMRFVNGTRLDDRLIRVDW 105
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 111 (44.1 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+ L+ NT E LED + FGP S++ + +D+ +GF +I F + A+ A++ +NG
Sbjct: 10 VGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAMNG 69
Query: 230 YGYDHLILSVD 240
D + VD
Sbjct: 70 ESLDGRQIRVD 80
>UNIPROTKB|Q3ZBT6 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9913 "Bos taurus" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P62995 KO:K12897
OrthoDB:EOG4BVRW2 EMBL:BC103113 IPI:IPI00717759
RefSeq:NP_001029948.1 UniGene:Bt.49333 ProteinModelPortal:Q3ZBT6
SMR:Q3ZBT6 STRING:Q3ZBT6 PRIDE:Q3ZBT6 Ensembl:ENSBTAT00000002225
GeneID:615156 KEGG:bta:615156 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 InParanoid:Q3ZBT6 OMA:YDDREYY NextBio:20899475
Uniprot:Q3ZBT6
Length = 288
Score = 120 (47.3 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 25/85 (29%), Positives = 47/85 (55%)
Query: 158 NARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNK 217
N D + + LS+ T+E DL ++ ++GP + + + D+ + +GFA+++F+N
Sbjct: 110 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 169
Query: 218 ADAAKAIQYLNGYGYDHLILSVDWS 242
DA +A + NG D + VD+S
Sbjct: 170 DDAKEAKERANGMELDGRRIRVDFS 194
>UNIPROTKB|E2RD37 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:YDDREYY EMBL:AAEX03017294
ProteinModelPortal:E2RD37 PRIDE:E2RD37 Ensembl:ENSCAFT00000021194
NextBio:20853966 Uniprot:E2RD37
Length = 288
Score = 120 (47.3 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 25/85 (29%), Positives = 47/85 (55%)
Query: 158 NARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNK 217
N D + + LS+ T+E DL ++ ++GP + + + D+ + +GFA+++F+N
Sbjct: 110 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 169
Query: 218 ADAAKAIQYLNGYGYDHLILSVDWS 242
DA +A + NG D + VD+S
Sbjct: 170 DDAKEAKERANGMELDGRRIRVDFS 194
>UNIPROTKB|P62995 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=TAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:CH471052 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:U61267 EMBL:U87836 EMBL:AF057159 EMBL:U68063
EMBL:AK301118 EMBL:BC000160 EMBL:BC000451 EMBL:BC005898
IPI:IPI00220938 IPI:IPI00301503 IPI:IPI00472633
RefSeq:NP_001230808.1 RefSeq:NP_004584.1 UniGene:Hs.533122 PDB:2CQC
PDB:2KXN PDB:2RRA PDB:2RRB PDBsum:2CQC PDBsum:2KXN PDBsum:2RRA
PDBsum:2RRB ProteinModelPortal:P62995 SMR:P62995 DIP:DIP-42278N
IntAct:P62995 MINT:MINT-5004415 STRING:P62995 PhosphoSite:P62995
DMDM:51703330 PaxDb:P62995 PRIDE:P62995 DNASU:6434
Ensembl:ENST00000342294 Ensembl:ENST00000382191
Ensembl:ENST00000453386 Ensembl:ENST00000456380 GeneID:6434
KEGG:hsa:6434 UCSC:uc003fpv.3 GeneCards:GC03M185632
H-InvDB:HIX0003928 HGNC:HGNC:10781 HPA:CAB011692 MIM:602719
neXtProt:NX_P62995 PharmGKB:PA35697 InParanoid:P62995
PhylomeDB:P62995 ChiTaRS:TRA2B EvolutionaryTrace:P62995
GenomeRNAi:6434 NextBio:24991 Bgee:P62995 CleanEx:HS_SFRS10
Genevestigator:P62995 GermOnline:ENSG00000136527 Uniprot:P62995
Length = 288
Score = 120 (47.3 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 25/85 (29%), Positives = 47/85 (55%)
Query: 158 NARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNK 217
N D + + LS+ T+E DL ++ ++GP + + + D+ + +GFA+++F+N
Sbjct: 110 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 169
Query: 218 ADAAKAIQYLNGYGYDHLILSVDWS 242
DA +A + NG D + VD+S
Sbjct: 170 DDAKEAKERANGMELDGRRIRVDFS 194
>MGI|MGI:106016 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:106016 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:X80232 EMBL:AK049573 EMBL:AK077418 EMBL:AK080378
EMBL:BC061177 IPI:IPI00139259 IPI:IPI00457594 PIR:S68798
RefSeq:NP_033212.1 UniGene:Mm.210352 UniGene:Mm.389440
UniGene:Mm.442193 ProteinModelPortal:P62996 SMR:P62996
STRING:P62996 PhosphoSite:P62996 PaxDb:P62996 PRIDE:P62996
Ensembl:ENSMUST00000161286 Ensembl:ENSMUST00000162413 GeneID:20462
KEGG:mmu:20462 UCSC:uc007ysc.1 InParanoid:P62996 NextBio:298551
Bgee:P62996 Genevestigator:P62996 GermOnline:ENSMUSG00000022858
Uniprot:P62996
Length = 288
Score = 120 (47.3 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 25/85 (29%), Positives = 47/85 (55%)
Query: 158 NARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNK 217
N D + + LS+ T+E DL ++ ++GP + + + D+ + +GFA+++F+N
Sbjct: 110 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 169
Query: 218 ADAAKAIQYLNGYGYDHLILSVDWS 242
DA +A + NG D + VD+S
Sbjct: 170 DDAKEAKERANGMELDGRRIRVDFS 194
>RGD|619886 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000302 "response to reactive oxygen species"
evidence=IEP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO;ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO;ISS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISO;ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000302 GO:GO:0000398 GO:GO:0048026
GO:GO:0000381 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
KO:K12897 OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 EMBL:D49708 EMBL:BC070948 IPI:IPI00202484
RefSeq:NP_476460.1 UniGene:Rn.8538 ProteinModelPortal:P62997
SMR:P62997 IntAct:P62997 STRING:P62997 PhosphoSite:P62997
PRIDE:P62997 Ensembl:ENSRNOT00000002429 GeneID:117259
KEGG:rno:117259 UCSC:RGD:619886 InParanoid:P62997 NextBio:620130
Genevestigator:P62997 GermOnline:ENSRNOG00000001783 Uniprot:P62997
Length = 288
Score = 120 (47.3 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 25/85 (29%), Positives = 47/85 (55%)
Query: 158 NARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNK 217
N D + + LS+ T+E DL ++ ++GP + + + D+ + +GFA+++F+N
Sbjct: 110 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 169
Query: 218 ADAAKAIQYLNGYGYDHLILSVDWS 242
DA +A + NG D + VD+S
Sbjct: 170 DDAKEAKERANGMELDGRRIRVDFS 194
>DICTYBASE|DDB_G0287197 [details] [associations]
symbol:ncbp2 "nuclear cap-binding protein subunit 2"
species:44689 "Dictyostelium discoideum" [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=IEA] [GO:0005846 "nuclear cap
binding complex" evidence=IEA;ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000339 "RNA cap binding"
evidence=IEA;ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0287197 GO:GO:0005634 GenomeReviews:CM000153_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000398
eggNOG:COG0724 GO:GO:0006370 EMBL:AAFI02000098 GO:GO:0000339
PANTHER:PTHR18847 GO:GO:0005846 HSSP:P52298 KO:K12883
RefSeq:XP_637361.1 ProteinModelPortal:Q54KR9 SMR:Q54KR9
STRING:Q54KR9 EnsemblProtists:DDB0233456 GeneID:8625983
KEGG:ddi:DDB_G0287197 InParanoid:Q54KR9 OMA:KEDAADC
ProtClustDB:CLSZ2497150 Uniprot:Q54KR9
Length = 234
Score = 118 (46.6 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAK 222
D ++ I + LS T+E L +L + G ++ + D+ GF ++ + +K DAA
Sbjct: 29 DKSSTIYVGYLSFYTTEEQLYELFSKCGEIKRIIMGLDRNQKTPCGFCFVEYYSKEDAAD 88
Query: 223 AIQYLNGYGYDHLILSVDW 241
I+Y+NG D ++ DW
Sbjct: 89 CIKYINGSKLDERLIRCDW 107
>TAIR|locus:2099931 [details] [associations]
symbol:SCL30 "SC35-like splicing factor 30" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0006979 "response to
oxidative stress" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006979 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
HSSP:P33240 HOGENOM:HOG000276233 eggNOG:NOG312850 KO:K12900
EMBL:AY099649 EMBL:AY086131 EMBL:AY128836 IPI:IPI00522161
RefSeq:NP_567021.1 UniGene:At.10035 ProteinModelPortal:Q8L3X8
SMR:Q8L3X8 IntAct:Q8L3X8 STRING:Q8L3X8 PaxDb:Q8L3X8 PRIDE:Q8L3X8
EnsemblPlants:AT3G55460.1 GeneID:824712 KEGG:ath:AT3G55460
TAIR:At3g55460 InParanoid:Q8L3X8 OMA:YYSPPRR
ProtClustDB:CLSN2717392 ArrayExpress:Q8L3X8 Genevestigator:Q8L3X8
Uniprot:Q8L3X8
Length = 262
Score = 119 (46.9 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 26/87 (29%), Positives = 46/87 (52%)
Query: 142 PPSLREGPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDK 201
PP R G GG G RR ++ + N+ ++ +L + ++FGP +Y+ RD
Sbjct: 25 PPPPRRGYGGGG--GGGGRRGSSHGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDY 82
Query: 202 TNGLCKGFAYIHFKNKADAAKAIQYLN 228
+G +GFA++ F + DA +A + +N
Sbjct: 83 YSGQPRGFAFVEFVDAYDAGEAQRSMN 109
>UNIPROTKB|Q9NW13 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 EMBL:CH471070 EMBL:CH236947 eggNOG:COG0724
EMBL:AC010655 KO:K14573 EMBL:AK001239 EMBL:AK222716 EMBL:AC018635
EMBL:BC013889 IPI:IPI00304187 RefSeq:NP_001159607.1
RefSeq:NP_060547.2 UniGene:Hs.274263 ProteinModelPortal:Q9NW13
SMR:Q9NW13 IntAct:Q9NW13 STRING:Q9NW13 PhosphoSite:Q9NW13
DMDM:55976611 SWISS-2DPAGE:Q9NW13 PaxDb:Q9NW13 PeptideAtlas:Q9NW13
PRIDE:Q9NW13 Ensembl:ENST00000223073 GeneID:55131 KEGG:hsa:55131
UCSC:uc003vmp.2 CTD:55131 GeneCards:GC07M127951 HGNC:HGNC:21863
HPA:HPA019058 HPA:HPA026672 MIM:612074 MIM:612079
neXtProt:NX_Q9NW13 Orphanet:157954 PharmGKB:PA134867266
HOGENOM:HOG000124666 HOVERGEN:HBG073213 InParanoid:Q9NW13
OMA:MRSKPAT OrthoDB:EOG4SN1NH PhylomeDB:Q9NW13 ChiTaRS:RBM28
GenomeRNAi:55131 NextBio:58802 ArrayExpress:Q9NW13 Bgee:Q9NW13
CleanEx:HS_RBM28 Genevestigator:Q9NW13 GermOnline:ENSG00000106344
Uniprot:Q9NW13
Length = 759
Score = 125 (49.1 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 29/91 (31%), Positives = 49/91 (53%)
Query: 152 KRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAY 211
K + A+ D + I NLS SE+DL+ + QFG ++ + R K +G +GF +
Sbjct: 100 KEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPR-KPDGKMRGFGF 158
Query: 212 IHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242
+ FKN +A KA++ +N ++VDW+
Sbjct: 159 VQFKNLLEAGKALKGMNMKEIKGRTVAVDWA 189
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 100 (40.3 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
I L+ T+E LE + ++G ++ L +D+ +GFA++ F++ ADA A + +NG
Sbjct: 12 IGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNG 71
Query: 230 YGYDHLILSVD 240
D + V+
Sbjct: 72 KSLDGKAIKVE 82
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 114 (45.2 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225
T+++I NLS T+ NDL +++G +++ RDK + KGF ++ F + DA A+
Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78
Query: 226 YLNGYGYDHLILSVDWSK 243
+G D L V +K
Sbjct: 79 RTDGKLVDGRELRVTLAK 96
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 114 (45.2 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225
T+++I NLS T+ NDL +++G +++ RDK + KGF ++ F + DA A+
Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78
Query: 226 YLNGYGYDHLILSVDWSK 243
+G D L V +K
Sbjct: 79 RTDGKLVDGRELRVTLAK 96
>UNIPROTKB|A6PVI3 [details] [associations]
symbol:NCBP2L "Nuclear cap-binding protein subunit 2-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0005846 "nuclear cap binding complex" evidence=IEA] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AL109946
IPI:IPI00398274 ProteinModelPortal:A6PVI3 SMR:A6PVI3 PRIDE:A6PVI3
Ensembl:ENST00000372379 GeneCards:GC0XP107037 HGNC:HGNC:31795
HPA:HPA010664 neXtProt:NX_A6PVI3 HOGENOM:HOG000217589
HOVERGEN:HBG052581 InParanoid:A6PVI3 OMA:GFREGQQ OrthoDB:EOG470TJG
Genevestigator:A6PVI3 PANTHER:PTHR18847 Uniprot:A6PVI3
Length = 153
Score = 107 (42.7 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 21/78 (26%), Positives = 40/78 (51%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
+++ + + NLS T+E + +L + +++ DK GF ++ N+ADA A
Sbjct: 37 ESSTLNMGNLSFYTTEEKIHELFSR-SDIRNIFMGLDKIKKTACGFCFVECHNRADAENA 95
Query: 224 IQYLNGYGYDHLILSVDW 241
+++L G D I+ DW
Sbjct: 96 MRFLTGTCLDEWIICTDW 113
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 110 (43.8 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 23/84 (27%), Positives = 46/84 (54%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + + L+ T+E LE + ++G +++ + +D+ + +GF ++ F+N DA A
Sbjct: 4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63
Query: 224 IQYLNGYGYDHLILSVDWS-KSTN 246
+ +NG D + VD + KS+N
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSN 87
>TAIR|locus:2033888 [details] [associations]
symbol:Y14 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0016604
"nuclear body" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0035145 "exon-exon junction complex"
evidence=IPI] [GO:0010628 "positive regulation of gene expression"
evidence=IEP] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005737 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0010628 GO:GO:0016604 GO:GO:0035145 KO:K12876 IPI:IPI00540540
RefSeq:NP_564591.1 UniGene:At.18276 ProteinModelPortal:F4I9J7
SMR:F4I9J7 PRIDE:F4I9J7 EnsemblPlants:AT1G51510.1 GeneID:841576
KEGG:ath:AT1G51510 OMA:WIILVTG Uniprot:F4I9J7
Length = 202
Score = 114 (45.2 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 26/86 (30%), Positives = 45/86 (52%)
Query: 160 RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKAD 219
+R+ + I +S + T E D+ + FG + L+ D+ +G KG+A I ++ K +
Sbjct: 89 QRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEE 148
Query: 220 AAKAIQYLNGYGYDHLILSVDWSKST 245
A AI +NG +SVDW+ S+
Sbjct: 149 AQSAISAMNGAELLTQNVSVDWAFSS 174
>UNIPROTKB|E2RIB8 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005794 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074976 KO:K14573 CTD:55131 OMA:KSMNMKE
EMBL:AAEX03009272 EMBL:AAEX03009273 RefSeq:XP_532435.3
ProteinModelPortal:E2RIB8 Ensembl:ENSCAFT00000002617 GeneID:475203
KEGG:cfa:475203 NextBio:20851079 Uniprot:E2RIB8
Length = 751
Score = 123 (48.4 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAK 222
D + I NLS SE+DL+ + Q+G ++ + R K +G +GFA++ FKN +A K
Sbjct: 111 DKKARLIIRNLSFKCSEDDLKTVFGQYGAVLEVNIPR-KPDGKMRGFAFVQFKNLLEAGK 169
Query: 223 AIQYLNGYGYDHLILSVDWS 242
A++ +N ++VDW+
Sbjct: 170 ALKSMNMKEIKGRTVAVDWA 189
>UNIPROTKB|Q8EK89 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 107 (42.7 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAI 224
T + + NL E +++ L +FGP + + L RD+ G KGF ++ ++A A KA+
Sbjct: 63 TMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEM-SEAGAQKAM 121
Query: 225 QYLNGYGYDHLILSVDWSKS 244
LN + + L V +K+
Sbjct: 122 VKLNDFNFQERTLKVREAKT 141
>TIGR_CMR|SO_0208 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 107 (42.7 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAI 224
T + + NL E +++ L +FGP + + L RD+ G KGF ++ ++A A KA+
Sbjct: 63 TMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEM-SEAGAQKAM 121
Query: 225 QYLNGYGYDHLILSVDWSKS 244
LN + + L V +K+
Sbjct: 122 VKLNDFNFQERTLKVREAKT 141
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 99 (39.9 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + + LS +T+E LE + ++G S++ + +D+ +GF ++ F+N DA A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 224 IQYLNG 229
+ +NG
Sbjct: 64 MMAMNG 69
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 99 (39.9 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + + LS +T+E LE + ++G S++ + +D+ +GF ++ F+N DA A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 224 IQYLNG 229
+ +NG
Sbjct: 64 MMAMNG 69
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 114 (45.2 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + I LS +T+E LE+ ++G +K+ + RD+ +GF ++ F+N DA A
Sbjct: 21 DEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDA 80
Query: 224 IQYLNGYGYDHLILSVD 240
+ +NG D ++ VD
Sbjct: 81 MAAMNGKQVDGRMIRVD 97
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 98 (39.6 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
I L+ T+E LE + ++G ++ L +D+ +GFA++ F++ ADA A + +NG
Sbjct: 14 IGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNG 73
Query: 230 YG 231
G
Sbjct: 74 KG 75
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 107 (42.7 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + + LS +T+E LE + ++G S++ + +D+ +GF ++ F+N DA A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 224 IQYLNGYGYDHLILSVDWS-KSTN 246
+ +NG D + VD + KS++
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSD 87
>RGD|1594679 [details] [associations]
symbol:Thoc4 "THO complex 4" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000346
"transcription export complex" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0046784 "intronless viral mRNA export
from host nucleus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1594679
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473948
KO:K12881 GeneTree:ENSGT00410000025615 IPI:IPI00768839
RefSeq:NP_001103072.1 UniGene:Rn.6994 Ensembl:ENSRNOT00000054955
GeneID:690585 KEGG:rno:690585 CTD:690585 NextBio:741240
Uniprot:D3ZXH7
Length = 189
Score = 111 (44.1 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+SNL S+ D+++L +FG K + D++ G G A +HF+ KADA KA++ NG
Sbjct: 110 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRS-GRSLGTADVHFERKADALKAMKQYNG 168
Query: 230 YGYD 233
D
Sbjct: 169 VPLD 172
>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
symbol:srsf2b "serine/arginine-rich splicing
factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
Length = 220
Score = 113 (44.8 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 23/81 (28%), Positives = 44/81 (54%)
Query: 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAK 222
D T++++ NL+ TS L + +++G +Y+ RD+ +GFA++ F +K DA
Sbjct: 11 DGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 70
Query: 223 AIQYLNGYGYDHLILSVDWSK 243
A+ ++G D L V ++
Sbjct: 71 AMDAMDGAILDGRELRVQMAR 91
>WB|WBGene00004705 [details] [associations]
symbol:rsp-8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0002009 GO:GO:0040007 GO:GO:0040010
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0048477 GO:GO:0003723 GO:GO:0040035
GO:GO:0000398 GeneTree:ENSGT00700000104309 HSSP:Q14103 KO:K12897
eggNOG:NOG297815 EMBL:Z92826 GeneID:176613 KEGG:cel:CELE_C18D11.4
CTD:176613 PIR:T19389 RefSeq:NP_001255142.1
ProteinModelPortal:Q9XTZ2 SMR:Q9XTZ2 DIP:DIP-26572N
MINT:MINT-1084022 STRING:Q9XTZ2 PaxDb:Q9XTZ2
EnsemblMetazoa:C18D11.4a.1 EnsemblMetazoa:C18D11.4a.2
UCSC:C18D11.4.1 WormBase:C18D11.4a InParanoid:Q9XTZ2 OMA:RENPQPS
NextBio:893300 Uniprot:Q9XTZ2
Length = 309
Score = 116 (45.9 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 31/96 (32%), Positives = 48/96 (50%)
Query: 148 GPGGK-RVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLC 206
G GG+ R + Y+ + + + NLS T+E DL D+ +FG +K L D+ +G
Sbjct: 57 GGGGRGRNQQYDRENPQPSKCLGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNS 116
Query: 207 KGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242
+GF +I+F DA A L D + VD+S
Sbjct: 117 RGFGFIYFNLIEDATAARDKLCNTDLDGHKIRVDFS 152
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 117 (46.2 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 29/80 (36%), Positives = 40/80 (50%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
I + NL+ T EN L L FG + + RD CKGF ++ N +A AIQ L
Sbjct: 275 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL 334
Query: 228 NGYGYDHLILSVDWSKSTNQ 247
NGY + +L V + TN+
Sbjct: 335 NGYTLGNRVLQVSFK--TNK 352
>POMBASE|SPAC23A1.09 [details] [associations]
symbol:SPAC23A1.09 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=NAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC23A1.09
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045292 HOGENOM:HOG000183826
KO:K12876 HSSP:Q9Y5S9 PIR:T38229 RefSeq:NP_594439.1
ProteinModelPortal:O42847 SMR:O42847 STRING:O42847
EnsemblFungi:SPAC23A1.09.1 GeneID:2541998 KEGG:spo:SPAC23A1.09
eggNOG:NOG246776 OMA:ITETTEG OrthoDB:EOG4M9523 NextBio:20803079
Uniprot:O42847
Length = 121
Score = 97 (39.2 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
I ++ + +E +EDL FGP ++L+ D+ G KG+A I + A KA+
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 228 N 228
N
Sbjct: 72 N 72
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 108 (43.1 bits), Expect = 0.00010, P = 0.00010
Identities = 22/84 (26%), Positives = 45/84 (53%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + + LS +T+E LE + ++G S++ + +D+ +GF ++ F+N DA A
Sbjct: 4 DEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 224 IQYLNGYGYDHLILSVDWSKSTNQ 247
+ +NG D + VD + +++
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSE 87
>UNIPROTKB|E1C2L5 [details] [associations]
symbol:THOC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000346
"transcription export complex" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0046784 "intronless viral mRNA export
from host nucleus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006406 GO:GO:0071013
InterPro:IPR025715 Pfam:PF13865 GO:GO:0000346
GeneTree:ENSGT00410000025615 OMA:IRNRPAI EMBL:AADN02053597
IPI:IPI00576073 ProteinModelPortal:E1C2L5
Ensembl:ENSGALT00000011710 Uniprot:E1C2L5
Length = 258
Score = 114 (45.2 bits), Expect = 0.00011, P = 0.00011
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 156 GYNARRNDDTTA-IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHF 214
G+ A +T + +SNL S+ D+++L +FG K + D++ G G A +HF
Sbjct: 93 GFGAGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRS-GRSLGTADVHF 151
Query: 215 KNKADAAKAIQYLNGYGYD 233
+ KADA KA++ NG D
Sbjct: 152 ERKADALKAMKQYNGVPLD 170
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 96 (38.9 bits), Expect = 0.00012, P = 0.00012
Identities = 24/86 (27%), Positives = 43/86 (50%)
Query: 148 GPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCK 207
G G R++ ++ ++D+ I + NL + ENDL +FG + + R+ G K
Sbjct: 27 GRGKDRLDD-SSWKSDNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSK 85
Query: 208 GFAYIHFKNKADAAKAIQYLNGYGYD 233
G+A++ + A KA L+ +G D
Sbjct: 86 GYAFVTYVTPKQAVKA---LDAHGKD 108
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 96 (38.9 bits), Expect = 0.00012, P = 0.00012
Identities = 24/86 (27%), Positives = 43/86 (50%)
Query: 148 GPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCK 207
G G R++ ++ ++D+ I + NL + ENDL +FG + + R+ G K
Sbjct: 27 GRGKDRLDD-SSWKSDNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSK 85
Query: 208 GFAYIHFKNKADAAKAIQYLNGYGYD 233
G+A++ + A KA L+ +G D
Sbjct: 86 GYAFVTYVTPKQAVKA---LDAHGKD 108
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 116 (45.9 bits), Expect = 0.00012, P = 0.00012
Identities = 28/85 (32%), Positives = 46/85 (54%)
Query: 146 REGPG-GKRVEG-YNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTN 203
R PG G + G ++A RN D T + + L SE L +L Q GP +Y+ +D+
Sbjct: 4 RIAPGVGANLLGQHSAERNQDAT-VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVT 62
Query: 204 GLCKGFAYIHFKNKADAAKAIQYLN 228
L + + +I ++++ DA AI+ LN
Sbjct: 63 NLHQNYGFIEYRSEEDADYAIKVLN 87
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225
T I + N+ +N SE E L FG + +YL +D+ +G KGF +++F++ A KA++
Sbjct: 233 TNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQ-DGKSKGFGFVNFEDHESAVKAVE 291
Query: 226 YLN 228
LN
Sbjct: 292 ELN 294
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 116 (45.9 bits), Expect = 0.00013, P = 0.00013
Identities = 28/77 (36%), Positives = 38/77 (49%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
I + NLS E+ L L FG + + + RD T CKGF ++ N +AA AI L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 228 NGYGYDHLILSVDWSKS 244
NGY +L V + S
Sbjct: 346 NGYRLGERVLQVSFKTS 362
Score = 112 (44.5 bits), Expect = 0.00038, P = 0.00038
Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 143 PSLREGPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKT 202
P+L GP + G N +D T + ++ L N ++++ + L G L RDK
Sbjct: 20 PALPNGP----LLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKI 75
Query: 203 NGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTN 246
G G+ ++++ + DA KAI LNG + V +++ ++
Sbjct: 76 TGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSS 119
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 116 (45.9 bits), Expect = 0.00013, P = 0.00013
Identities = 28/77 (36%), Positives = 38/77 (49%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
I + NLS E+ L L FG + + + RD T CKGF ++ N +AA AI L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 228 NGYGYDHLILSVDWSKS 244
NGY +L V + S
Sbjct: 346 NGYRLGERVLQVSFKTS 362
Score = 112 (44.5 bits), Expect = 0.00038, P = 0.00038
Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 143 PSLREGPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKT 202
P+L GP + G N +D T + ++ L N ++++ + L G L RDK
Sbjct: 20 PALPNGP----LLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKI 75
Query: 203 NGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTN 246
G G+ ++++ + DA KAI LNG + V +++ ++
Sbjct: 76 TGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSS 119
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 116 (45.9 bits), Expect = 0.00013, P = 0.00013
Identities = 28/77 (36%), Positives = 38/77 (49%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
I + NLS E+ L L FG + + + RD T CKGF ++ N +AA AI L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 228 NGYGYDHLILSVDWSKS 244
NGY +L V + S
Sbjct: 346 NGYRLGERVLQVSFKTS 362
Score = 112 (44.5 bits), Expect = 0.00038, P = 0.00038
Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 143 PSLREGPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKT 202
P+L GP + G N +D T + ++ L N ++++ + L G L RDK
Sbjct: 20 PALPNGP----LLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKI 75
Query: 203 NGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTN 246
G G+ ++++ + DA KAI LNG + V +++ ++
Sbjct: 76 TGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSS 119
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 116 (45.9 bits), Expect = 0.00013, P = 0.00013
Identities = 28/77 (36%), Positives = 38/77 (49%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
I + NLS E+ L L FG + + + RD T CKGF ++ N +AA AI L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 228 NGYGYDHLILSVDWSKS 244
NGY +L V + S
Sbjct: 346 NGYRLGERVLQVSFKTS 362
Score = 112 (44.5 bits), Expect = 0.00038, P = 0.00038
Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 143 PSLREGPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKT 202
P+L GP + G N +D T + ++ L N ++++ + L G L RDK
Sbjct: 20 PALPNGP----LLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKI 75
Query: 203 NGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTN 246
G G+ ++++ + DA KAI LNG + V +++ ++
Sbjct: 76 TGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSS 119
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 116 (45.9 bits), Expect = 0.00013, P = 0.00013
Identities = 28/77 (36%), Positives = 38/77 (49%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
I + NLS E+ L L FG + + + RD T CKGF ++ N +AA AI L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 228 NGYGYDHLILSVDWSKS 244
NGY +L V + S
Sbjct: 346 NGYRLGERVLQVSFKTS 362
Score = 112 (44.5 bits), Expect = 0.00038, P = 0.00038
Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 143 PSLREGPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKT 202
P+L GP + G N +D T + ++ L N ++++ + L G L RDK
Sbjct: 20 PALPNGP----LLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKI 75
Query: 203 NGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTN 246
G G+ ++++ + DA KAI LNG + V +++ ++
Sbjct: 76 TGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSS 119
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 116 (45.9 bits), Expect = 0.00013, P = 0.00013
Identities = 28/77 (36%), Positives = 38/77 (49%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
I + NLS E+ L L FG + + + RD T CKGF ++ N +AA AI L
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 228 NGYGYDHLILSVDWSKS 244
NGY +L V + S
Sbjct: 347 NGYRLGERVLQVSFKTS 363
Score = 112 (44.5 bits), Expect = 0.00038, P = 0.00038
Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 143 PSLREGPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKT 202
P+L GP + G N +D T + ++ L N ++++ + L G L RDK
Sbjct: 20 PALPNGP----LLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKI 75
Query: 203 NGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTN 246
G G+ ++++ + DA KAI LNG + V +++ ++
Sbjct: 76 TGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSS 119
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 108 (43.1 bits), Expect = 0.00013, P = 0.00013
Identities = 22/84 (26%), Positives = 45/84 (53%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + + LS +T+E LE + ++G S++ + +D+ +GF ++ F+N DA A
Sbjct: 4 DEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 224 IQYLNGYGYDHLILSVDWSKSTNQ 247
+ +NG D + VD + +++
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSE 87
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 111 (44.1 bits), Expect = 0.00013, P = 0.00013
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225
T++++ NL+ TS + L + +++G +Y+ RD+ +GFA++ F +K DA A+
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 226 YLNGYGYDHLILSVDWSK 243
++G D L V ++
Sbjct: 74 AMDGAVLDGRELRVQMAR 91
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 110 (43.8 bits), Expect = 0.00014, P = 0.00014
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225
T + I N + L++L QFG T + + RD NG KGF ++ ++ DA KA++
Sbjct: 104 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVE 162
Query: 226 YLNG 229
+NG
Sbjct: 163 EMNG 166
>UNIPROTKB|D4A5K7 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28 (Predicted),
isoform CRA_b" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1311336 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473959 EMBL:AC096035 GeneTree:ENSGT00550000074976 KO:K14573
CTD:55131 IPI:IPI00949364 RefSeq:NP_001101320.1 UniGene:Rn.50022
Ensembl:ENSRNOT00000064007 GeneID:312182 KEGG:rno:312182
NextBio:664628 Uniprot:D4A5K7
Length = 700
Score = 119 (46.9 bits), Expect = 0.00014, P = 0.00014
Identities = 31/96 (32%), Positives = 50/96 (52%)
Query: 147 EGPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLC 206
E P K + A+ D + I NLS SE+DL+ + +G ++ + R K +G
Sbjct: 96 ESPK-KEPKHKKAKVADKKARLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPR-KPDGKM 153
Query: 207 KGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242
+GFA+I FKN +A KA++ N ++VDW+
Sbjct: 154 RGFAFIQFKNLLEAGKALKGANMKEIKGRTVAVDWA 189
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 107 (42.7 bits), Expect = 0.00015, P = 0.00015
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + + LS +T+E LE + ++G S++ + +D+ +GF ++ F+N DA A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 224 IQYLNGYGYDHLILSVDWS-KSTN 246
+ +NG D + VD + KS++
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSD 87
>SGD|S000003012 [details] [associations]
symbol:RNA15 "Component of the cleavage and polyadenylation
factor I (CF I)" species:4932 "Saccharomyces cerevisiae"
[GO:0006378 "mRNA polyadenylation" evidence=IDA] [GO:0006379 "mRNA
cleavage" evidence=IDA] [GO:0005849 "mRNA cleavage factor complex"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0046982 "protein heterodimerization
activity" evidence=IPI] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000003012
EMBL:BK006941 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
eggNOG:NOG246793 GO:GO:0006378 GO:GO:0006379 GO:GO:0005849
KO:K14407 InterPro:IPR026896 Pfam:PF14304
GeneTree:ENSGT00550000074641 OrthoDB:EOG4GQTF6 PDB:2KM8 PDBsum:2KM8
PDB:2L9B PDBsum:2L9B EMBL:M73462 EMBL:Z72566 PIR:B40257
RefSeq:NP_011471.1 PDB:2X1A PDB:2X1B PDB:2X1F PDBsum:2X1A
PDBsum:2X1B PDBsum:2X1F ProteinModelPortal:P25299 SMR:P25299
DIP:DIP-1489N IntAct:P25299 MINT:MINT-389896 STRING:P25299
PaxDb:P25299 PeptideAtlas:P25299 EnsemblFungi:YGL044C GeneID:852838
KEGG:sce:YGL044C CYGD:YGL044c HOGENOM:HOG000247912 OMA:NINMTTP
EvolutionaryTrace:P25299 NextBio:972414 Genevestigator:P25299
GermOnline:YGL044C Uniprot:P25299
Length = 296
Score = 114 (45.2 bits), Expect = 0.00015, P = 0.00015
Identities = 25/96 (26%), Positives = 47/96 (48%)
Query: 153 RVEGYNA--RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFA 210
R G NA + N + + + ++ + +E + DL GP + + D G KG+A
Sbjct: 3 RQSGVNAGVQNNPPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYA 62
Query: 211 YIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTN 246
+I F++ +A A++ LNGY L +S +++
Sbjct: 63 FIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSD 98
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 95 (38.5 bits), Expect = 0.00016, P = 0.00016
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+ NL +E L +L Q GP K+ + +DK +G K FA+++FK++ A+ LNG
Sbjct: 14 VGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEVSVPYAMNLLNG 72
>UNIPROTKB|I3L8K8 [details] [associations]
symbol:I3L8K8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 EMBL:CT956011
Ensembl:ENSSSCT00000026978 OMA:HRISVAF Uniprot:I3L8K8
Length = 87
Score = 95 (38.5 bits), Expect = 0.00016, P = 0.00016
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 157 YNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKN 216
++A+ D T + NL E L +L Q GP +K+ + +D+ +G K F ++ FK+
Sbjct: 2 FSAQEEADRTVF-VGNLEARVREEILYELFLQAGPLTKVTICKDR-DGNPKSFGFVCFKH 59
Query: 217 KADAAKAIQYLNG 229
+ AI LNG
Sbjct: 60 PESVSYAIALLNG 72
>RGD|1311336 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005794 "Golgi apparatus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311336 GO:GO:0005794
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC096035 OrthoDB:EOG4SN1NH IPI:IPI00373266
ProteinModelPortal:D4A618 Ensembl:ENSRNOT00000007777
UCSC:RGD:1311336 ArrayExpress:D4A618 Uniprot:D4A618
Length = 749
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 31/96 (32%), Positives = 50/96 (52%)
Query: 147 EGPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLC 206
E P K + A+ D + I NLS SE+DL+ + +G ++ + R K +G
Sbjct: 96 ESPK-KEPKHKKAKVADKKARLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPR-KPDGKM 153
Query: 207 KGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242
+GFA+I FKN +A KA++ N ++VDW+
Sbjct: 154 RGFAFIQFKNLLEAGKALKGANMKEIKGRTVAVDWA 189
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 111 (44.1 bits), Expect = 0.00016, P = 0.00016
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225
T++++ NL+ TS + L + +++G +Y+ RD+ +GFA++ F +K DA A+
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 226 YLNGYGYDHLILSVDWSK 243
++G D L V ++
Sbjct: 74 AMDGAVLDGRELRVQMAR 91
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 111 (44.1 bits), Expect = 0.00016, P = 0.00016
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225
T++++ NL+ TS + L + +++G +Y+ RD+ +GFA++ F +K DA A+
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 226 YLNGYGYDHLILSVDWSK 243
++G D L V ++
Sbjct: 74 AMDGAVLDGRELRVQMAR 91
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 111 (44.1 bits), Expect = 0.00016, P = 0.00016
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225
T++++ NL+ TS + L + +++G +Y+ RD+ +GFA++ F +K DA A+
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 226 YLNGYGYDHLILSVDWSK 243
++G D L V ++
Sbjct: 74 AMDGAVLDGRELRVQMAR 91
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 111 (44.1 bits), Expect = 0.00016, P = 0.00016
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225
T++++ NL+ TS + L + +++G +Y+ RD+ +GFA++ F +K DA A+
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 226 YLNGYGYDHLILSVDWSK 243
++G D L V ++
Sbjct: 74 AMDGAVLDGRELRVQMAR 91
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 111 (44.1 bits), Expect = 0.00016, P = 0.00016
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225
T++++ NL+ TS + L + +++G +Y+ RD+ +GFA++ F +K DA A+
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 226 YLNGYGYDHLILSVDWSK 243
++G D L V ++
Sbjct: 74 AMDGAVLDGRELRVQMAR 91
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 111 (44.1 bits), Expect = 0.00016, P = 0.00016
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225
T++++ NL+ TS + L + +++G +Y+ RD+ +GFA++ F +K DA A+
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 226 YLNGYGYDHLILSVDWSK 243
++G D L V ++
Sbjct: 74 AMDGAVLDGRELRVQMAR 91
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 111 (44.1 bits), Expect = 0.00016, P = 0.00016
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225
T++++ NL+ TS + L + +++G +Y+ RD+ +GFA++ F +K DA A+
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 226 YLNGYGYDHLILSVDWSK 243
++G D L V ++
Sbjct: 74 AMDGAVLDGRELRVQMAR 91
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 111 (44.1 bits), Expect = 0.00016, P = 0.00016
Identities = 22/78 (28%), Positives = 44/78 (56%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225
T++++ NL+ TS + L + +++G +Y+ RD+ +GFA++ F +K DA A+
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 226 YLNGYGYDHLILSVDWSK 243
++G D L V ++
Sbjct: 74 AMDGAVLDGRELRVQMAR 91
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 115 (45.5 bits), Expect = 0.00016, P = 0.00016
Identities = 28/77 (36%), Positives = 38/77 (49%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
I + NLS E+ L L FG + + + RD T CKGF ++ N +AA AI L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 228 NGYGYDHLILSVDWSKS 244
NGY +L V + S
Sbjct: 338 NGYRLGDRVLQVSFKTS 354
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 107 (42.7 bits), Expect = 0.00017, P = 0.00017
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + + LS +T+E LE + ++G S++ + +D+ +GF ++ F+N DA A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 224 IQYLNGYGYDHLILSVDWS-KSTN 246
+ +NG D + VD + KS++
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSD 87
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 107 (42.7 bits), Expect = 0.00017, P = 0.00017
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + + LS +T+E LE + ++G S++ + +D+ +GF ++ F+N DA A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 224 IQYLNGYGYDHLILSVDWS-KSTN 246
+ +NG D + VD + KS++
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSD 87
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 107 (42.7 bits), Expect = 0.00017, P = 0.00017
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + + LS +T+E LE + ++G S++ + +D+ +GF ++ F+N DA A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 224 IQYLNGYGYDHLILSVDWS-KSTN 246
+ +NG D + VD + KS++
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSD 87
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 107 (42.7 bits), Expect = 0.00017, P = 0.00017
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + + LS +T+E LE + ++G S++ + +D+ +GF ++ F+N DA A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 224 IQYLNGYGYDHLILSVDWS-KSTN 246
+ +NG D + VD + KS++
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSD 87
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 27/86 (31%), Positives = 49/86 (56%)
Query: 148 GPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCK 207
GP ++ E +A T + + NLS T++++L+ Q+G S + RD +G +
Sbjct: 207 GPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDG-DGKSR 265
Query: 208 GFAYIHFKNKADAAKAIQYLNGYGYD 233
F +++F+N DAA+A++ LNG +D
Sbjct: 266 CFGFVNFENPEDAARAVEALNGKKFD 291
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 107 (42.7 bits), Expect = 0.00018, P = 0.00018
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + + LS +T+E LE + ++G S++ + +D+ +GF ++ F+N DA A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 224 IQYLNGYGYDHLILSVDWS-KSTN 246
+ +NG D + VD + KS++
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSD 87
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 106 (42.4 bits), Expect = 0.00019, P = 0.00019
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + I L+ +T+E LE + ++G S++ + +D+ +GF ++ F+N DA A
Sbjct: 3 DEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDA 62
Query: 224 IQYLNGYGYDHLILSVD 240
+ +NG D + VD
Sbjct: 63 MMAMNGKAVDGRQIRVD 79
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 94 (38.1 bits), Expect = 0.00020, P = 0.00020
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
I L+ T+E LE + ++G ++ L +D+ +GFA++ F++ ADA A + +NG
Sbjct: 12 IGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNG 71
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 94 (38.1 bits), Expect = 0.00020, P = 0.00020
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
I L+ T+E LE + ++G ++ L +D+ +GFA++ F++ ADA A + +NG
Sbjct: 14 IGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNG 73
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 108 (43.1 bits), Expect = 0.00022, P = 0.00022
Identities = 22/84 (26%), Positives = 45/84 (53%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + + LS +T+E LE + ++G S++ + +D+ +GF ++ F+N DA A
Sbjct: 4 DEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 224 IQYLNGYGYDHLILSVDWSKSTNQ 247
+ +NG D + VD + +++
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSE 87
>UNIPROTKB|I3LIU9 [details] [associations]
symbol:LOC100621482 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
PANTHER:PTHR18847 GeneTree:ENSGT00390000003197
Ensembl:ENSSSCT00000027593 OMA:GYGKMCK Uniprot:I3LIU9
Length = 148
Score = 102 (41.0 bits), Expect = 0.00022, P = 0.00022
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+ NLS T+E + +L + G K+ ++ C GF ++ + ++ADA A++Y+NG
Sbjct: 44 VGNLSFYTTEEQIYELFSKSGDIKKIIMA-------C-GFCFVEYYSRADAENAMRYING 95
Query: 230 YGYDHLILSVDW 241
D I+ DW
Sbjct: 96 TRLDDRIIRTDW 107
>MGI|MGI:1341044 [details] [associations]
symbol:Alyref "Aly/REF export factor" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000346 "transcription export complex" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=TAS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
[GO:0006810 "transport" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0046784 "intronless viral mRNA export from host
nucleus" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1341044 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 EMBL:CH466558
GO:GO:0003697 GO:GO:0051028 EMBL:AL663030 InterPro:IPR025715
Pfam:PF13865 KO:K12881 eggNOG:NOG316507 HOGENOM:HOG000239962
HOVERGEN:HBG054806 OrthoDB:EOG4MW87F CTD:10189
GeneTree:ENSGT00410000025615 OMA:IRNRPAI EMBL:U89876 EMBL:AJ252140
EMBL:BC120588 EMBL:BC137658 EMBL:AK035721 IPI:IPI00114407
IPI:IPI00122339 RefSeq:NP_035698.1 UniGene:Mm.1886 PDB:1NO8
PDBsum:1NO8 ProteinModelPortal:O08583 SMR:O08583 DIP:DIP-59977N
STRING:O08583 PhosphoSite:O08583 PaxDb:O08583 PRIDE:O08583
Ensembl:ENSMUST00000026125 GeneID:21681 KEGG:mmu:21681
UCSC:uc007mtl.1 InParanoid:Q0VBL5 EvolutionaryTrace:O08583
NextBio:300988 Bgee:O08583 CleanEx:MM_THOC4 Genevestigator:O08583
GermOnline:ENSMUSG00000025134 Uniprot:O08583
Length = 255
Score = 111 (44.1 bits), Expect = 0.00024, P = 0.00024
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+SNL S+ D+++L +FG K + D++ G G A +HF+ KADA KA++ NG
Sbjct: 109 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRS-GRSLGTADVHFERKADALKAMKQYNG 167
Query: 230 YGYD 233
D
Sbjct: 168 VPLD 171
>UNIPROTKB|Q3T0I4 [details] [associations]
symbol:ALYREF "THO complex subunit 4" species:9913 "Bos
taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0046784 "intronless viral mRNA
export from host nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000346 "transcription export complex"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 InterPro:IPR025715 Pfam:PF13865
GO:GO:0000346 GO:GO:0046784 KO:K12881 HSSP:Q9NQ94 eggNOG:NOG316507
HOGENOM:HOG000239962 OrthoDB:EOG4MW87F EMBL:BC102384
IPI:IPI00710588 RefSeq:NP_001030494.1 UniGene:Bt.48992
ProteinModelPortal:Q3T0I4 SMR:Q3T0I4 STRING:Q3T0I4 PRIDE:Q3T0I4
Ensembl:ENSBTAT00000011202 GeneID:537706 KEGG:bta:537706 CTD:10189
GeneTree:ENSGT00410000025615 InParanoid:Q3T0I4 OMA:IRNRPAI
NextBio:20877198 Uniprot:Q3T0I4
Length = 257
Score = 111 (44.1 bits), Expect = 0.00024, P = 0.00024
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+SNL S+ D+++L +FG K + D++ G G A +HF+ KADA KA++ NG
Sbjct: 110 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRS-GRSLGTADVHFERKADALKAMKQYNG 168
Query: 230 YGYD 233
D
Sbjct: 169 VPLD 172
>UNIPROTKB|F1PL92 [details] [associations]
symbol:ALYREF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025715
Pfam:PF13865 GeneTree:ENSGT00410000025615 OMA:IRNRPAI
EMBL:AAEX03006169 Ensembl:ENSCAFT00000009466 Uniprot:F1PL92
Length = 257
Score = 111 (44.1 bits), Expect = 0.00024, P = 0.00024
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+SNL S+ D+++L +FG K + D++ G G A +HF+ KADA KA++ NG
Sbjct: 110 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRS-GRSLGTADVHFERKADALKAMKQYNG 168
Query: 230 YGYD 233
D
Sbjct: 169 VPLD 172
>UNIPROTKB|Q86V81 [details] [associations]
symbol:ALYREF "THO complex subunit 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000346 "transcription export complex" evidence=IDA]
[GO:0046784 "intronless viral mRNA export from host nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005654 GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC145207 GO:GO:0000398
GO:GO:0071013 Reactome:REACT_1788 GO:GO:0006369 InterPro:IPR025715
Pfam:PF13865 GO:GO:0031124 Reactome:REACT_78 GO:GO:0000346
GO:GO:0046784 KO:K12881 eggNOG:NOG316507 HOGENOM:HOG000239962
HOVERGEN:HBG054806 CTD:10189 EMBL:BC052302 EMBL:AF047002
IPI:IPI01010794 RefSeq:NP_005773.3 UniGene:Hs.534385 PDB:3ULH
PDBsum:3ULH ProteinModelPortal:Q86V81 SMR:Q86V81 DIP:DIP-32711N
IntAct:Q86V81 MINT:MINT-5001811 STRING:Q86V81 PhosphoSite:Q86V81
DMDM:48429165 PaxDb:Q86V81 PRIDE:Q86V81 DNASU:10189
Ensembl:ENST00000331204 GeneID:10189 KEGG:hsa:10189
GeneCards:GC17M079849 HGNC:HGNC:19071 HPA:CAB016281 HPA:HPA019799
MIM:604171 neXtProt:NX_Q86V81 PharmGKB:PA134925107
InParanoid:Q86V81 GenomeRNAi:10189 NextBio:38562 PMAP-CutDB:Q86V81
ArrayExpress:Q86V81 Bgee:Q86V81 CleanEx:HS_THOC4
Genevestigator:Q86V81 GermOnline:ENSG00000183684 Uniprot:Q86V81
Length = 257
Score = 111 (44.1 bits), Expect = 0.00024, P = 0.00024
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+SNL S+ D+++L +FG K + D++ G G A +HF+ KADA KA++ NG
Sbjct: 110 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRS-GRSLGTADVHFERKADALKAMKQYNG 168
Query: 230 YGYD 233
D
Sbjct: 169 VPLD 172
>WB|WBGene00004387 [details] [associations]
symbol:rnp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0009790 "embryo development" evidence=IMP] [GO:0001703
"gastrulation with mouth forming first" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0005737 GO:GO:0040007 GO:GO:0006915
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0003723 GO:GO:0006396 GO:GO:0040035 GO:GO:0040022 HSSP:Q9V535
eggNOG:COG0724 GeneTree:ENSGT00550000074641 GO:GO:0001703
EMBL:Z32683 HOGENOM:HOG000183826 KO:K12876 PIR:F88427
RefSeq:NP_497891.1 ProteinModelPortal:Q21832 SMR:Q21832
DIP:DIP-26500N IntAct:Q21832 MINT:MINT-1100537 STRING:Q21832
PaxDb:Q21832 EnsemblMetazoa:R07E5.14.1 EnsemblMetazoa:R07E5.14.2
EnsemblMetazoa:R07E5.14.3 GeneID:175572 KEGG:cel:CELE_R07E5.14
UCSC:R07E5.14.2 CTD:175572 WormBase:R07E5.14 InParanoid:Q21832
OMA:NIHEEAT NextBio:888726 Uniprot:Q21832
Length = 142
Score = 100 (40.3 bits), Expect = 0.00025, P = 0.00025
Identities = 19/82 (23%), Positives = 43/82 (52%)
Query: 160 RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKAD 219
+R+ + + ++N+ +E+D+ D ++G ++L+ D+ G KG+A + ++ + +
Sbjct: 49 QRSVEGWIVFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKE 108
Query: 220 AAKAIQYLNGYGYDHLILSVDW 241
A +AI N + VDW
Sbjct: 109 ANEAIDQSNDTDLLGQNVKVDW 130
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 107 (42.7 bits), Expect = 0.00026, P = 0.00026
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + + LS +T+E LE + ++G S++ + +D+ +GF ++ F+N DA A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 224 IQYLNGYGYDHLILSVDWS-KSTN 246
+ +NG D + VD + KS++
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSD 87
>FB|FBgn0260400 [details] [associations]
symbol:elav "embryonic lethal abnormal vision" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
Length = 483
Score = 115 (45.5 bits), Expect = 0.00026, P = 0.00026
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
I I NL+ T E L L FG + + +D T CKG+ ++ N +AA AI+ L
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463
Query: 228 NGYGYDHLILSVDWSKSTNQ 247
NGY + +L V + TN+
Sbjct: 464 NGYTMGNRVLQVSFK--TNK 481
>UNIPROTKB|E9PB61 [details] [associations]
symbol:ALYREF "THO complex subunit 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC145207 InterPro:IPR025715 Pfam:PF13865 KO:K12881 CTD:10189
OMA:IRNRPAI RefSeq:NP_005773.3 UniGene:Hs.534385 DNASU:10189
GeneID:10189 KEGG:hsa:10189 HGNC:HGNC:19071 GenomeRNAi:10189
NextBio:38562 IPI:IPI00328840 ProteinModelPortal:E9PB61 SMR:E9PB61
IntAct:E9PB61 PRIDE:E9PB61 Ensembl:ENST00000505490 UCSC:uc002kbu.2
ArrayExpress:E9PB61 Bgee:E9PB61 Uniprot:E9PB61
Length = 264
Score = 111 (44.1 bits), Expect = 0.00026, P = 0.00026
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+SNL S+ D+++L +FG K + D++ G G A +HF+ KADA KA++ NG
Sbjct: 117 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRS-GRSLGTADVHFERKADALKAMKQYNG 175
Query: 230 YGYD 233
D
Sbjct: 176 VPLD 179
>UNIPROTKB|E7EPF2 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC092153 EMBL:AC104598
EMBL:AC131754 HGNC:HGNC:9907 ChiTaRS:RBMS1 EMBL:AC133105
IPI:IPI01011353 ProteinModelPortal:E7EPF2 SMR:E7EPF2
Ensembl:ENST00000428519 ArrayExpress:E7EPF2 Bgee:E7EPF2
Uniprot:E7EPF2
Length = 128
Score = 93 (37.8 bits), Expect = 0.00026, P = 0.00026
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225
T + I L +T++ DL L + +G DKT CKG+ ++ F + A A KA+
Sbjct: 29 TNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVS 88
Query: 226 YLNGYG 231
L G
Sbjct: 89 ALKASG 94
>UNIPROTKB|G4MTV6 [details] [associations]
symbol:MGG_01579 "Pre-mRNA branch site protein p14"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K12833 RefSeq:XP_003714557.1
ProteinModelPortal:G4MTV6 SMR:G4MTV6 EnsemblFungi:MGG_01579T0
GeneID:2679525 KEGG:mgr:MGG_01579 Uniprot:G4MTV6
Length = 115
Score = 93 (37.8 bits), Expect = 0.00026, P = 0.00026
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 167 AIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQY 226
A+ + NLS N + +L DL +FGP ++ R KG A++ +++ DA +A
Sbjct: 14 ALFVKNLSYNVTPEELFDLFGKFGPIRQV---RQGIASNTKGTAFVVYEDVMDAKQACDK 70
Query: 227 LNGYGYDHLILSV 239
LNG+ + + L V
Sbjct: 71 LNGFNFQNRYLVV 83
>DICTYBASE|DDB_G0291966 [details] [associations]
symbol:DDB_G0291966 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0291966
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000186 Gene3D:4.10.60.10 OMA:SKISVEW
eggNOG:NOG77895 RefSeq:XP_001134500.1 ProteinModelPortal:Q1ZXB1
EnsemblProtists:DDB0233327 GeneID:8628419 KEGG:ddi:DDB_G0291966
InParanoid:Q1ZXB1 ProtClustDB:CLSZ2846728 Uniprot:Q1ZXB1
Length = 312
Score = 112 (44.5 bits), Expect = 0.00028, P = 0.00028
Identities = 25/77 (32%), Positives = 46/77 (59%)
Query: 167 AIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQY 226
++ I LSV T++ +L D ++G ++ + KTNG C +A++ +K + DA A++
Sbjct: 2 SLYIGRLSVETTQKNLNDHFSKYGTITRNDVK--KTNGRC--YAFVEYKERRDADDALKA 57
Query: 227 LNGYGYDHLILSVDWSK 243
LNG + +SV+W+K
Sbjct: 58 LNGTTLLNSKISVEWAK 74
>ZFIN|ZDB-GENE-070928-29 [details] [associations]
symbol:alyref "Aly/REF export factor" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070928-29 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR025715 Pfam:PF13865
GeneTree:ENSGT00410000025615 OMA:IRNRPAI EMBL:CU693479
IPI:IPI00868115 Ensembl:ENSDART00000108647 ArrayExpress:F1Q9D1
Bgee:F1Q9D1 Uniprot:F1Q9D1
Length = 280
Score = 111 (44.1 bits), Expect = 0.00030, P = 0.00030
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+SNL S+ D+++L +FG K + D++ G G A +HF+ KADA KA++ NG
Sbjct: 129 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRS-GRSLGTADVHFERKADALKAMKQYNG 187
Query: 230 YGYD 233
D
Sbjct: 188 VPLD 191
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 109 (43.4 bits), Expect = 0.00030, P = 0.00030
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225
T++++ NL+ TS L + +++G +Y+ RD+ +GFA++ F +K DA A+
Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 226 YLNGYGYDHLILSVDWSK 243
++G D L V ++
Sbjct: 74 AMDGALLDGRELRVQMAR 91
>CGD|CAL0000019 [details] [associations]
symbol:orf19.1646 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0000019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000014
EMBL:AACQ01000013 GO:GO:0006364 RefSeq:XP_721604.1
RefSeq:XP_721723.1 ProteinModelPortal:Q5AJS6 STRING:Q5AJS6
GeneID:3636592 GeneID:3636694 KEGG:cal:CaO19.1646
KEGG:cal:CaO19.9215 eggNOG:NOG323716 KO:K14787 Uniprot:Q5AJS6
Length = 841
Score = 117 (46.2 bits), Expect = 0.00031, P = 0.00031
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 159 ARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKA 218
A++ ++T + I N+S SE D L Q+G +++++ D G KGF Y+ F K
Sbjct: 303 AQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKE 362
Query: 219 DAAKAIQYLN 228
DA +A + L+
Sbjct: 363 DATRAYRSLD 372
>ZFIN|ZDB-GENE-040426-2455 [details] [associations]
symbol:rbm14b "RNA binding motif protein 14b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-2455 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF57756 HSSP:P19339
KO:K13189 HOVERGEN:HBG062132 EMBL:BC056604 EMBL:BC068361
IPI:IPI00492284 RefSeq:NP_997973.1 UniGene:Dr.132507 GeneID:402858
KEGG:dre:402858 CTD:402858 InParanoid:Q6NV05 NextBio:20816684
Uniprot:Q6NV05
Length = 556
Score = 115 (45.5 bits), Expect = 0.00032, P = 0.00032
Identities = 34/98 (34%), Positives = 51/98 (52%)
Query: 146 REGPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGL 205
RE G V + R +T + + NLS + DL++L + FG L DK
Sbjct: 63 REFKGRNLVVEESRGRPLHSTKVFVGNLSSMCTTEDLQELFQTFGKV----LECDKV--- 115
Query: 206 CKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSK 243
KG+A++H +NK DA +AI+ L+G + LSV+ SK
Sbjct: 116 -KGYAFVHMENKEDALQAIEALHGTSFKGRPLSVELSK 152
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 105 (42.0 bits), Expect = 0.00033, P = 0.00033
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + + LS +T+E LE + ++G S++ + +D+ +GF ++ F+N DA A
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 224 IQYLNGYGYDHLILSVDWS-KSTN 246
+ +NG D + VD + KS++
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSD 87
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 105 (42.0 bits), Expect = 0.00033, P = 0.00033
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + + LS +T+E LE + ++G S++ + +D+ +GF ++ F+N DA A
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 224 IQYLNGYGYDHLILSVDWS-KSTN 246
+ +NG D + VD + KS++
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSD 87
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 105 (42.0 bits), Expect = 0.00033, P = 0.00033
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + + LS +T+E LE + ++G S++ + +D+ +GF ++ F+N DA A
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 224 IQYLNGYGYDHLILSVDWS-KSTN 246
+ +NG D + VD + KS++
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSD 87
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 92 (37.4 bits), Expect = 0.00034, P = 0.00034
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 172 NLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYG 231
N+ +E L+D+ + GP L D+ G KG+ + ++++ A A++ LNG
Sbjct: 3 NIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGRE 62
Query: 232 YDHLILSVD 240
+ L VD
Sbjct: 63 FSGRALRVD 71
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 92 (37.4 bits), Expect = 0.00034, P = 0.00034
Identities = 17/76 (22%), Positives = 41/76 (53%)
Query: 167 AIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQY 226
++ + N+ +E ++ + G + + + D+ G +GFA++ F +A A +A++
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 227 LNGYGYDHLILSVDWS 242
LNG ++ L V+++
Sbjct: 67 LNGVAFNGRNLRVNYA 82
>WB|WBGene00013293 [details] [associations]
symbol:Y57G11A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z99279
RefSeq:NP_502757.2 ProteinModelPortal:O18219 SMR:O18219
EnsemblMetazoa:Y57G11A.5 GeneID:190364 KEGG:cel:CELE_Y57G11A.5
UCSC:Y57G11A.5 CTD:190364 WormBase:Y57G11A.5 eggNOG:NOG301947
HOGENOM:HOG000020379 InParanoid:O18219 OMA:KKICDLE Uniprot:O18219
Length = 110
Score = 92 (37.4 bits), Expect = 0.00034, P = 0.00034
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 160 RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKAD 219
+RN + + + N+ + +E ++E + GP +++++ GFA++ FK
Sbjct: 11 KRNVENRQVYVGNMPFDATEKEIEAVFSVMGPIKSIWMAKRPP-----GFAFVTFKRTVH 65
Query: 220 AAKAIQYLNG 229
A A++YLNG
Sbjct: 66 AFDAVKYLNG 75
>ZFIN|ZDB-GENE-050306-51 [details] [associations]
symbol:rbm8a "RNA binding motif protein 8A"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0051028
"mRNA transport" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050306-51 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0051028
eggNOG:COG0724 GeneTree:ENSGT00550000074641 CTD:9939
HOGENOM:HOG000183826 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
EMBL:BC090261 IPI:IPI00505312 RefSeq:NP_001013363.1
UniGene:Dr.76821 HSSP:Q9Y5S9 ProteinModelPortal:Q5D018 SMR:Q5D018
STRING:Q5D018 PRIDE:Q5D018 Ensembl:ENSDART00000018253 GeneID:503767
KEGG:dre:503767 InParanoid:Q5D018 NextBio:20866311 Bgee:Q5D018
Uniprot:Q5D018
Length = 174
Score = 105 (42.0 bits), Expect = 0.00035, P = 0.00035
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
++ + +E D+ D +FG ++L+ D+ G KG+A + ++ +A A++ LNG
Sbjct: 77 VTGVHEEATEEDVHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGLNG 136
Query: 230 YGYDHLILSVDW 241
+SVDW
Sbjct: 137 QELMGQPISVDW 148
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 107 (42.7 bits), Expect = 0.00037, P = 0.00037
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + + LS +T+E LE + ++G S++ + +D+ +GF ++ F+N DA A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 224 IQYLNGYGYDHLILSVDWS-KSTN 246
+ +NG D + VD + KS++
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSD 87
>UNIPROTKB|C9JE21 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010655
EMBL:AC018635 HGNC:HGNC:21863 ChiTaRS:RBM28 IPI:IPI00944978
ProteinModelPortal:C9JE21 SMR:C9JE21 STRING:C9JE21
Ensembl:ENST00000459726 ArrayExpress:C9JE21 Bgee:C9JE21
Uniprot:C9JE21
Length = 204
Score = 107 (42.7 bits), Expect = 0.00038, P = 0.00038
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 152 KRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAY 211
K + A+ D + I NLS SE+DL+ + QFG ++ + R K +G +GF +
Sbjct: 134 KEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPR-KPDGKMRGFGF 192
Query: 212 IHFKNKADAAKA 223
+ FKN +A KA
Sbjct: 193 VQFKNLLEAGKA 204
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 111 (44.1 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 38/115 (33%), Positives = 53/115 (46%)
Query: 141 VPPSL---REGP----GGKRVEGYNARRNDDTT-AIRISNLSVNTSENDLEDLVKQFGPT 192
VPPS R P G + G N + T I + NLS ++ E+ L L FG
Sbjct: 257 VPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAV 316
Query: 193 SKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTNQ 247
+ + + RD CKGF ++ N +AA AI LNGY +L V + TN+
Sbjct: 317 NNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK--TNK 369
Score = 36 (17.7 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 88 FTNNCPFKDSALFLADANKKPFNTVPG 114
F NN K S L+ + P PG
Sbjct: 202 FANNPSQKSSQALLSQLYQSPNRRYPG 228
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 111 (44.1 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 38/115 (33%), Positives = 53/115 (46%)
Query: 141 VPPSL---REGP----GGKRVEGYNARRNDDTT-AIRISNLSVNTSENDLEDLVKQFGPT 192
VPPS R P G + G N + T I + NLS ++ E+ L L FG
Sbjct: 257 VPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAV 316
Query: 193 SKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTNQ 247
+ + + RD CKGF ++ N +AA AI LNGY +L V + TN+
Sbjct: 317 NNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK--TNK 369
Score = 36 (17.7 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 88 FTNNCPFKDSALFLADANKKPFNTVPG 114
F NN K S L+ + P PG
Sbjct: 202 FANNPSQKSSQALLSQLYQSPNRRYPG 228
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 111 (44.1 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 38/115 (33%), Positives = 53/115 (46%)
Query: 141 VPPSL---REGP----GGKRVEGYNARRNDDTT-AIRISNLSVNTSENDLEDLVKQFGPT 192
VPPS R P G + G N + T I + NLS ++ E+ L L FG
Sbjct: 264 VPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAV 323
Query: 193 SKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTNQ 247
+ + + RD CKGF ++ N +AA AI LNGY +L V + TN+
Sbjct: 324 NNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK--TNK 376
Score = 36 (17.7 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 88 FTNNCPFKDSALFLADANKKPFNTVPG 114
F NN K S L+ + P PG
Sbjct: 209 FANNPSQKSSQALLSQLYQSPNRRYPG 235
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 111 (44.1 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 38/115 (33%), Positives = 53/115 (46%)
Query: 141 VPPSL---REGP----GGKRVEGYNARRNDDTT-AIRISNLSVNTSENDLEDLVKQFGPT 192
VPPS R P G + G N + T I + NLS ++ E+ L L FG
Sbjct: 264 VPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAV 323
Query: 193 SKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTNQ 247
+ + + RD CKGF ++ N +AA AI LNGY +L V + TN+
Sbjct: 324 NNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK--TNK 376
Score = 36 (17.7 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 88 FTNNCPFKDSALFLADANKKPFNTVPG 114
F NN K S L+ + P PG
Sbjct: 209 FANNPSQKSSQALLSQLYQSPNRRYPG 235
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 110 (43.8 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
I + NLS ++ E+ L L FG + + + RD CKGF ++ N +AA AI L
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 228 NGYGYDHLILSVDWSKSTNQ 247
NGY +L V + TN+
Sbjct: 330 NGYRLGDRVLQVSFK--TNK 347
Score = 36 (17.7 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 88 FTNNCPFKDSALFLADANKKPFNTVPG 114
F NN K S L+ + P PG
Sbjct: 207 FANNPSQKSSQALLSQLYQSPNRRYPG 233
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 112 (44.5 bits), Expect = 0.00042, P = 0.00042
Identities = 42/161 (26%), Positives = 63/161 (39%)
Query: 88 FTNNCPFKDSALFLADANKKPFNTVPGTNIMAXXXXXXXXXXXXXXXXXXXIYVPPSLRE 147
F NN K S L+ + P PG +A + P ++
Sbjct: 231 FANNPSQKSSQALLSHLYQSPNRRYPGP--LAQQAQRFRLDNLLNMAYGVKRFSPMTI-- 286
Query: 148 GPGGKRVEGYNARRNDDTT-AIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLC 206
G + G N + T I + NL+ + EN L + FG + + + RD C
Sbjct: 287 -DGVTSLAGINLPAHAGTGWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKC 345
Query: 207 KGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTNQ 247
KGF ++ N +AA AI LNGY +L V + TN+
Sbjct: 346 KGFGFVTMTNYDEAAVAIASLNGYRLGDRVLQVSFK--TNK 384
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 111 (44.1 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 38/115 (33%), Positives = 53/115 (46%)
Query: 141 VPPSL---REGP----GGKRVEGYNARRNDDTT-AIRISNLSVNTSENDLEDLVKQFGPT 192
VPPS R P G + G N + T I + NLS ++ E+ L L FG
Sbjct: 268 VPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAV 327
Query: 193 SKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTNQ 247
+ + + RD CKGF ++ N +AA AI LNGY +L V + TN+
Sbjct: 328 NNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK--TNK 380
Score = 36 (17.7 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 88 FTNNCPFKDSALFLADANKKPFNTVPG 114
F NN K S L+ + P PG
Sbjct: 213 FANNPSQKSSQALLSQLYQSPNRRYPG 239
>TAIR|locus:2172144 [details] [associations]
symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
Uniprot:Q9FIU6
Length = 156
Score = 102 (41.0 bits), Expect = 0.00042, P = 0.00042
Identities = 21/85 (24%), Positives = 42/85 (49%)
Query: 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAK 222
+ +T + +S LS T+ L QFG + + D+ +G KGF ++ + D+AK
Sbjct: 53 EPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAK 112
Query: 223 AIQYLNGYGYDHLILSVDWSKSTNQ 247
I ++G D ++ ++++ Q
Sbjct: 113 GIAGMDGKFLDGWVIFAEYARPREQ 137
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 111 (44.1 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 38/115 (33%), Positives = 53/115 (46%)
Query: 141 VPPSL---REGP----GGKRVEGYNARRNDDTT-AIRISNLSVNTSENDLEDLVKQFGPT 192
VPPS R P G + G N + T I + NLS ++ E+ L L FG
Sbjct: 269 VPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAV 328
Query: 193 SKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTNQ 247
+ + + RD CKGF ++ N +AA AI LNGY +L V + TN+
Sbjct: 329 NNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK--TNK 381
Score = 36 (17.7 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 88 FTNNCPFKDSALFLADANKKPFNTVPG 114
F NN K S L+ + P PG
Sbjct: 214 FANNPSQKSSQALLSQLYQSPNRRYPG 240
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 111 (44.1 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 38/115 (33%), Positives = 53/115 (46%)
Query: 141 VPPSL---REGP----GGKRVEGYNARRNDDTT-AIRISNLSVNTSENDLEDLVKQFGPT 192
VPPS R P G + G N + T I + NLS ++ E+ L L FG
Sbjct: 269 VPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAV 328
Query: 193 SKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTNQ 247
+ + + RD CKGF ++ N +AA AI LNGY +L V + TN+
Sbjct: 329 NNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK--TNK 381
Score = 36 (17.7 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 88 FTNNCPFKDSALFLADANKKPFNTVPG 114
F NN K S L+ + P PG
Sbjct: 214 FANNPSQKSSQALLSQLYQSPNRRYPG 240
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 91 (37.1 bits), Expect = 0.00044, P = 0.00044
Identities = 18/74 (24%), Positives = 38/74 (51%)
Query: 167 AIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQY 226
++ + N T+E +L + G + + + D+ G +GFA+I F + A +A++
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 227 LNGYGYDHLILSVD 240
+NG ++ L V+
Sbjct: 66 MNGAEFNGRPLRVN 79
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 107 (42.7 bits), Expect = 0.00044, P = 0.00044
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + + LS +T+E LE + ++G S++ + +D+ +GF ++ F+N DA A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 224 IQYLNGYGYDHLILSVDWS-KSTN 246
+ +NG D + VD + KS++
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSD 87
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 110 (43.8 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
I + NLS ++ E+ L L FG + + + RD CKGF ++ N +AA AI L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 228 NGYGYDHLILSVDWSKSTNQ 247
NGY +L V + TN+
Sbjct: 345 NGYRLGDRVLQVSFK--TNK 362
Score = 36 (17.7 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 88 FTNNCPFKDSALFLADANKKPFNTVPG 114
F NN K S L+ + P PG
Sbjct: 209 FANNPSQKSSQALLSQLYQSPNRRYPG 235
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 110 (43.8 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
I + NLS ++ E+ L L FG + + + RD CKGF ++ N +AA AI L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 228 NGYGYDHLILSVDWSKSTNQ 247
NGY +L V + TN+
Sbjct: 345 NGYRLGDRVLQVSFK--TNK 362
Score = 36 (17.7 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 88 FTNNCPFKDSALFLADANKKPFNTVPG 114
F NN K S L+ + P PG
Sbjct: 209 FANNPSQKSSQALLSQLYQSPNRRYPG 235
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 110 (43.8 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
I + NLS ++ E+ L L FG + + + RD CKGF ++ N +AA AI L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 228 NGYGYDHLILSVDWSKSTNQ 247
NGY +L V + TN+
Sbjct: 350 NGYRLGDRVLQVSFK--TNK 367
Score = 36 (17.7 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 88 FTNNCPFKDSALFLADANKKPFNTVPG 114
F NN K S L+ + P PG
Sbjct: 214 FANNPSQKSSQALLSQLYQSPNRRYPG 240
>ASPGD|ASPL0000065384 [details] [associations]
symbol:AN7706 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001304 EMBL:AACD01000131 InterPro:IPR025715 Pfam:PF13865
KO:K12881 eggNOG:NOG316507 OrthoDB:EOG4DV8WK RefSeq:XP_680975.1
ProteinModelPortal:Q5AVH4 EnsemblFungi:CADANIAT00000838
GeneID:2869696 KEGG:ani:AN7706.2 HOGENOM:HOG000174259 OMA:LHYDITE
Uniprot:Q5AVH4
Length = 328
Score = 110 (43.8 bits), Expect = 0.00053, P = 0.00053
Identities = 31/89 (34%), Positives = 45/89 (50%)
Query: 146 REGPGGKR--VEGYNA---RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRD 200
R GG+R V+ Y+ R T +RI NL + +E DLE+L + GP S + L D
Sbjct: 61 RPSRGGRRPRVDRYSPSPDRSASAGTRLRIENLHYDITETDLEELFSRIGPISNVSLVYD 120
Query: 201 KTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+ G +G AY+ + DA AI +G
Sbjct: 121 RA-GRSEGVAYVTYSRYNDAKTAIAEFDG 148
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 110 (43.8 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
I + NLS ++ E+ L L FG + + + RD CKGF ++ N +AA AI L
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 228 NGYGYDHLILSVDWSKSTNQ 247
NGY +L V + TN+
Sbjct: 361 NGYRLGDRVLQVSFK--TNK 378
Score = 36 (17.7 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 88 FTNNCPFKDSALFLADANKKPFNTVPG 114
F NN K S L+ + P PG
Sbjct: 225 FANNPSQKSSQALLSQLYQSPNRRYPG 251
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 113 (44.8 bits), Expect = 0.00057, P = 0.00057
Identities = 26/90 (28%), Positives = 46/90 (51%)
Query: 139 IYVPPSLREGPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLS 198
IYV P L ++E A T + + N++ T++ ++L +FGP L
Sbjct: 196 IYVAPHLSRKERDSQLEETKAHY----TNLYVKNINSETTDEQFQELFAKFGPIVSASLE 251
Query: 199 RDKTNGLCKGFAYIHFKNKADAAKAIQYLN 228
+D +G KGF +++++ DA KA++ LN
Sbjct: 252 KD-ADGKLKGFGFVNYEKHEDAVKAVEALN 280
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 110 (43.8 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
I + NLS ++ E+ L L FG + + + RD CKGF ++ N +AA AI L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 228 NGYGYDHLILSVDWSKSTNQ 247
NGY +L V + TN+
Sbjct: 350 NGYRLGDRVLQVSFK--TNK 367
Score = 35 (17.4 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 88 FTNNCPFKDSALFLADANKKPFNTVPG 114
F NN K S L+ + P PG
Sbjct: 214 FANNPSQKTSQALLSQLYQSPNRRYPG 240
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 111 (44.1 bits), Expect = 0.00063, P = 0.00063
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 154 VEGYNARRNDDTTA--IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAY 211
V+ Y A D T I ++NL N +E +L+ Q G +Y+ T KG+ Y
Sbjct: 223 VQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEV--IYVKIPAT----KGYGY 276
Query: 212 IHFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTNQ 247
+ FK + A +A+Q + G + + WSK+ Q
Sbjct: 277 VQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQ 312
>UNIPROTKB|F1P6U2 [details] [associations]
symbol:SNRNP35 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005689 GeneTree:ENSGT00530000063750 CTD:11066 KO:K13155
OMA:QHEVFVD EMBL:AAEX03014640 RefSeq:XP_534648.2
ProteinModelPortal:F1P6U2 Ensembl:ENSCAFT00000011983 GeneID:477450
KEGG:cfa:477450 Uniprot:F1P6U2
Length = 246
Score = 107 (42.7 bits), Expect = 0.00066, P = 0.00066
Identities = 22/79 (27%), Positives = 42/79 (53%)
Query: 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAK 222
D + ++ L++ T E L+++ ++G ++ L RD GL KG+A+I +K + K
Sbjct: 48 DPLLTLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGLSKGYAFIEYKEERSLIK 107
Query: 223 AIQYLNGYGYDHLILSVDW 241
A + +G D + VD+
Sbjct: 108 AYRDADGLVIDQHEIFVDY 126
>UNIPROTKB|A4FUC6 [details] [associations]
symbol:SFRS9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12890 CTD:8683 OrthoDB:EOG4CC42K
EMBL:DAAA02045453 EMBL:BC114699 IPI:IPI00690315
RefSeq:NP_001076867.1 RefSeq:XP_003585083.1 UniGene:Bt.30434
SMR:A4FUC6 STRING:A4FUC6 Ensembl:ENSBTAT00000016997
GeneID:100851440 GeneID:509905 KEGG:bta:100851440 KEGG:bta:509905
InParanoid:A4FUC6 OMA:PPPRHYR NextBio:20869189 Uniprot:A4FUC6
Length = 221
Score = 106 (42.4 bits), Expect = 0.00067, P = 0.00067
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
I + NL + E DLEDL ++G S++ L +GL FA++ F++ DA AI
Sbjct: 16 IYVGNLPSDVREKDLEDLFYKYGRISEIELKN--RHGLVP-FAFVRFEDPRDAEDAIYGR 72
Query: 228 NGYGYDHLILSVDWSKS 244
NGY Y L V++ ++
Sbjct: 73 NGYDYGQCRLRVEFPRT 89
>FB|FBgn0010774 [details] [associations]
symbol:Ref1 "RNA and export factor binding protein 1"
species:7227 "Drosophila melanogaster" [GO:0003713 "transcription
coactivator activity" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0031965 "nuclear membrane"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005654 GO:GO:0000166
GO:GO:0031965 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0003713
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 InterPro:IPR025715
Pfam:PF13865 KO:K12881 HSSP:O08583 eggNOG:NOG316507
GeneTree:ENSGT00410000025615 OMA:IRNRPAI ChiTaRS:ALYREF
EMBL:AF172637 RefSeq:NP_651968.1 UniGene:Dm.3104 SMR:Q9V3E7
IntAct:Q9V3E7 MINT:MINT-318070 STRING:Q9V3E7
EnsemblMetazoa:FBtr0081642 GeneID:44029 KEGG:dme:Dmel_CG1101
UCSC:CG1101-RA CTD:44029 FlyBase:FBgn0010774 InParanoid:Q9V3E7
OrthoDB:EOG470S0M GenomeRNAi:44029 NextBio:836635 Uniprot:Q9V3E7
Length = 266
Score = 100 (40.3 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225
T + + NL S D+++L FGP K + D++ G G A + F+ +ADA KAI+
Sbjct: 109 TRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRS-GRSLGTADVIFERRADALKAIK 167
Query: 226 YLNGYGYD 233
+G D
Sbjct: 168 QYHGVPLD 175
Score = 42 (19.8 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 142 PPSLREGPGGKRVEGYNAR 160
P + R GPGG R G R
Sbjct: 22 PQAARGGPGGARKTGGQQR 40
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 109 (43.4 bits), Expect = 0.00070, P = 0.00070
Identities = 31/95 (32%), Positives = 43/95 (45%)
Query: 154 VEGYNARRNDDTT-AIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYI 212
+ G N N + I I NL + E L + FG + + + RD CKGF ++
Sbjct: 231 ISGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 290
Query: 213 HFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTNQ 247
N +AA AI LNGY IL V + TN+
Sbjct: 291 TMTNYEEAAMAIASLNGYRLGDKILQVSFK--TNK 323
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 109 (43.4 bits), Expect = 0.00070, P = 0.00070
Identities = 31/95 (32%), Positives = 43/95 (45%)
Query: 154 VEGYNARRNDDTT-AIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYI 212
+ G N N + I I NL + E L + FG + + + RD CKGF ++
Sbjct: 231 ISGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 290
Query: 213 HFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTNQ 247
N +AA AI LNGY IL V + TN+
Sbjct: 291 TMTNYEEAAMAIASLNGYRLGDKILQVSFK--TNK 323
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 111 (44.1 bits), Expect = 0.00072, P = 0.00072
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
I + NL TS+ +L DL G + ++ + T G KGF + F+N+ DAA +I+ L
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPT-GRSKGFGVVQFENENDAASSIEKL 370
Query: 228 NGYGY 232
NGY Y
Sbjct: 371 NGYRY 375
>WB|WBGene00004315 [details] [associations]
symbol:rbd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0006396
"RNA processing" evidence=IMP] [GO:0040039 "inductive cell
migration" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0000166 GO:GO:0018996
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035 GO:GO:0040039
HSSP:P19339 GO:GO:0040002 GO:GO:0040025 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
GO:GO:0000478 EMBL:Z83127 PIR:T25186 RefSeq:NP_502432.1
ProteinModelPortal:Q9XU67 SMR:Q9XU67 DIP:DIP-26131N
MINT:MINT-1105789 STRING:Q9XU67 PaxDb:Q9XU67
EnsemblMetazoa:T23F6.4.1 EnsemblMetazoa:T23F6.4.2 GeneID:178229
KEGG:cel:CELE_T23F6.4 UCSC:T23F6.4.1 CTD:178229 WormBase:T23F6.4
InParanoid:Q9XU67 NextBio:900268 Uniprot:Q9XU67
Length = 872
Score = 114 (45.2 bits), Expect = 0.00074, P = 0.00074
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
+T + + NL T E+DL+ L K++G S++ + DK G CKGFA + F A A
Sbjct: 277 ETGRLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAA 336
Query: 224 IQYLNGY 230
L+GY
Sbjct: 337 YSALDGY 343
>UNIPROTKB|I3LH22 [details] [associations]
symbol:LOC100514264 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU915617
Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
Length = 161
Score = 101 (40.6 bits), Expect = 0.00078, P = 0.00078
Identities = 21/78 (26%), Positives = 40/78 (51%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+ L+ N+ + LED + F P S++ + +D+ +GF +I F N A+ ++ +NG
Sbjct: 10 VGGLNFNSDKQALEDHISSFRPISEVVIVKDRETQRSRGFGFITFTNPEHASNVMRAMNG 69
Query: 230 YGYDHLILSVDWSKSTNQ 247
D + VD + + Q
Sbjct: 70 ESLDGRQIHVDHAGKSAQ 87
>WB|WBGene00016245 [details] [associations]
symbol:C30B5.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0040007 GO:GO:0016477
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0042127 GO:GO:0007281 GO:GO:0040020
eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107 EMBL:FO080719
HSSP:Q14103 GeneTree:ENSGT00600000084414 PIR:T15706
RefSeq:NP_495237.1 UniGene:Cel.15758 ProteinModelPortal:Q18318
SMR:Q18318 DIP:DIP-26943N IntAct:Q18318 MINT:MINT-1092197
STRING:Q18318 PaxDb:Q18318 EnsemblMetazoa:C30B5.4 GeneID:183040
KEGG:cel:CELE_C30B5.4 UCSC:C30B5.4 CTD:183040 WormBase:C30B5.4
InParanoid:Q18318 OMA:WKVIRER NextBio:919704 Uniprot:Q18318
Length = 302
Score = 108 (43.1 bits), Expect = 0.00079, P = 0.00079
Identities = 25/77 (32%), Positives = 38/77 (49%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D+ I I LS SE D+ + Q+G + L RDK G KGFA++ +K++ A
Sbjct: 36 DSAWIYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILA 95
Query: 224 IQYLNGYGYDHLILSVD 240
+ NG ++ VD
Sbjct: 96 VDNFNGISLHKRMIRVD 112
>MGI|MGI:2655711 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2655711
GO:GO:0005794 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 GeneTree:ENSGT00550000074976 KO:K14573 EMBL:AC153909
CTD:55131 HOVERGEN:HBG073213 OrthoDB:EOG4SN1NH EMBL:AK012408
EMBL:AK013047 EMBL:AK019296 EMBL:AK019436 EMBL:AK156773
EMBL:BC018373 EMBL:BC040811 IPI:IPI00229472 RefSeq:NP_598686.2
UniGene:Mm.40802 PDB:1X4H PDBsum:1X4H ProteinModelPortal:Q8CGC6
SMR:Q8CGC6 DIP:DIP-58949N STRING:Q8CGC6 PhosphoSite:Q8CGC6
PaxDb:Q8CGC6 PRIDE:Q8CGC6 Ensembl:ENSMUST00000007993 GeneID:68272
KEGG:mmu:68272 UCSC:uc009bcx.2 InParanoid:Q8CGC6 OMA:SASASXA
EvolutionaryTrace:Q8CGC6 NextBio:326882 Bgee:Q8CGC6
CleanEx:MM_RBM28 Genevestigator:Q8CGC6
GermOnline:ENSMUSG00000029701 Uniprot:Q8CGC6
Length = 750
Score = 113 (44.8 bits), Expect = 0.00080, P = 0.00080
Identities = 29/96 (30%), Positives = 50/96 (52%)
Query: 147 EGPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLC 206
E P K + A+ D + I NLS SE+DL+ + +G ++ + + K +G
Sbjct: 96 ESPK-KEPKHKKAKVADKKARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPK-KPDGKM 153
Query: 207 KGFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242
+GFA++ FKN +A KA++ N ++VDW+
Sbjct: 154 RGFAFVQFKNLLEAGKALKGANMKEIKGRTVAVDWA 189
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 112 (44.5 bits), Expect = 0.00081, P = 0.00081
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225
T I + NL V+ E L+DL QFG + + RD + G +GF +++F+ DA KA+
Sbjct: 191 TNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDS-GHSRGFGFVNFEKHEDAQKAVT 249
Query: 226 YLNG 229
+NG
Sbjct: 250 DMNG 253
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 110 (43.8 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
I + NLS ++ E+ L L FG + + + RD CKGF ++ N +AA AI L
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 228 NGYGYDHLILSVDWSKSTNQ 247
NGY +L V + TN+
Sbjct: 387 NGYRLGDRVLQVSFK--TNK 404
Score = 35 (17.4 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 88 FTNNCPFKDSALFLADANKKPFNTVPG 114
F NN K S L+ + P PG
Sbjct: 251 FANNPSQKTSQALLSQLYQSPNRRYPG 277
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 108 (43.1 bits), Expect = 0.00091, P = 0.00091
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
IS L N ++ D+ED+ +FG + D+T GL +G A+I F +++A +AI NG
Sbjct: 110 ISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Query: 230 Y 230
+
Sbjct: 170 H 170
>UNIPROTKB|F1LVK5 [details] [associations]
symbol:F1LVK5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 IPI:IPI00569674 PRIDE:F1LVK5
Ensembl:ENSRNOT00000007700 Uniprot:F1LVK5
Length = 249
Score = 106 (42.4 bits), Expect = 0.00091, P = 0.00091
Identities = 25/91 (27%), Positives = 47/91 (51%)
Query: 152 KRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAY 211
+R G N D + + LS+ +E DL ++ ++GP + + + D+ + + FA+
Sbjct: 73 QRNHGGNWENPDPNYFLGVFGLSLYITERDLREVFSKYGPVADVSIVYDQQSSQSREFAF 132
Query: 212 IHFKNKADAAKAIQYLNGYGYDHLILSVDWS 242
+ F+N DA +A ++ NG D VD+S
Sbjct: 133 VCFENIDDAKEAKEHANGMELDGCQSRVDFS 163
>UNIPROTKB|Q29RT0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
KEGG:bta:617969 KEGG:bta:782306 CTD:27288
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
Length = 396
Score = 109 (43.4 bits), Expect = 0.00097, P = 0.00097
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
I L++ T E LE ++G S++ L +D+ +GFA+I F++ ADA A++ +NG
Sbjct: 12 IGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNG 71
Query: 230 YGYDHLILSV 239
D + V
Sbjct: 72 KSLDGKAIKV 81
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 107 (42.7 bits), Expect = 0.0010, P = 0.0010
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + + LS +T+E LE + ++G S++ + +D+ +GF ++ F+N DA A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 224 IQYLNGYGYDHLILSVDWS-KSTN 246
+ +NG D + VD + KS++
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSD 87
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 247 211 0.00081 112 3 11 22 0.39 33
31 0.48 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 225
No. of states in DFA: 606 (64 KB)
Total size of DFA: 168 KB (2098 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.78u 0.07s 16.85t Elapsed: 00:00:11
Total cpu time: 16.80u 0.07s 16.87t Elapsed: 00:00:12
Start: Thu Aug 15 14:34:32 2013 End: Thu Aug 15 14:34:44 2013
WARNINGS ISSUED: 1