RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13227
(247 letters)
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 69.3 bits (169), Expect = 5e-16
Identities = 48/88 (54%), Positives = 67/88 (76%), Gaps = 1/88 (1%)
Query: 160 RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKAD 219
RR DD IR++NLS +T E DL++L + FG S++YL++DKT G KGFA+I F + D
Sbjct: 3 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 62
Query: 220 AAKAIQYLNGYGYDHLILSVDWSK-STN 246
AA+AI ++G+GYDHLIL+V+W+K STN
Sbjct: 63 AARAIAGVSGFGYDHLILNVEWAKPSTN 90
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 66.5 bits (162), Expect = 5e-15
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAK 222
+ + + NLS T+E + +L + G K+ + DK GF ++ + ++ADA
Sbjct: 5 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAEN 64
Query: 223 AIQYLNGYGYDHLILSVDWSKS 244
A++Y+NG D I+ DW
Sbjct: 65 AMRYINGTRLDDRIIRTDWDAG 86
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 64.6 bits (157), Expect = 3e-14
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTN-GLCKGFAYIHFKNKAD 219
+ T+ I + N+ ++ ++ +L FG + L + T G +GF ++ F K D
Sbjct: 4 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQD 63
Query: 220 AAKAIQYL-NGYGYDHLILSVDWSKS 244
A KA L + L ++W+ S
Sbjct: 64 AKKAFNALCHSTHLYGRRLVLEWADS 89
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 63.4 bits (154), Expect = 5e-14
Identities = 18/76 (23%), Positives = 36/76 (47%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
+ + +L + +E L + GP + + RD G+AY++F+ ADA +A+ +
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
Query: 228 NGYGYDHLILSVDWSK 243
N + + WS+
Sbjct: 63 NFDVIKGKPVRIMWSQ 78
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 61.7 bits (149), Expect = 3e-13
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225
T + ++ L N ++ + L G L RDK G G+ ++++ + DA KAI
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62
Query: 226 YLNGYGYDHLILSVDWSK 243
LNG + V +++
Sbjct: 63 TLNGLRLQTKTIKVSYAR 80
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 60.4 bits (146), Expect = 6e-13
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 170 ISNLSVNTSENDLEDLVKQFGP---TSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQY 226
I NL+ +T+E L+ + + G + L GF ++ +K A KA++
Sbjct: 3 IKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ 62
Query: 227 LNGYGYDHLILSVDWSKSTNQ 247
L G+ D L V S+ +
Sbjct: 63 LQGHTVDGHKLEVRISERATK 83
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 60.8 bits (147), Expect = 7e-13
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 156 GYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFK 215
G + RN D T + + L SE L +L Q GP ++ +D+ G +G+ ++ F
Sbjct: 1 GPISERNQDAT-VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFL 59
Query: 216 NKADAAKAIQYLNGYGYDHLILSVDWSKSTNQ 247
++ DA AI+ ++ + V+ + + N+
Sbjct: 60 SEEDADYAIKIMDMIKLYGKPIRVNKASAHNK 91
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 61.2 bits (148), Expect = 8e-13
Identities = 16/82 (19%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAK 222
+ + I NL + ++ D+ ++GP ++ +G AY+ +++ DA
Sbjct: 5 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIR---VGNTPETRGTAYVVYEDIFDAKN 61
Query: 223 AIQYLNGYGYDHLILSVDWSKS 244
A +L+G+ + L V + +
Sbjct: 62 ACDHLSGFNVCNRYLVVLYYNA 83
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 60.0 bits (145), Expect = 1e-12
Identities = 20/78 (25%), Positives = 42/78 (53%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQ 225
T + ++ L + ++ +L L + GP + + RD G G+A++ F ++ D+ +AI+
Sbjct: 3 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIK 62
Query: 226 YLNGYGYDHLILSVDWSK 243
LNG + L V +++
Sbjct: 63 VLNGITVRNKRLKVSYAR 80
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 59.2 bits (143), Expect = 2e-12
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
T + ++NL +++ L+ + ++G + + RDK G +G A++ + + +A +A
Sbjct: 5 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 64
Query: 224 IQYLNGYGYD--HLILSVDW 241
I LN + LSV
Sbjct: 65 ISALNNVIPEGGSQPLSVRL 84
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 58.2 bits (140), Expect = 5e-12
Identities = 17/84 (20%), Positives = 40/84 (47%)
Query: 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADA 220
R+ + + ++++ E+++++ +G ++L+ D+ G KG+A + ++ A
Sbjct: 3 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQA 62
Query: 221 AKAIQYLNGYGYDHLILSVDWSKS 244
A + LNG + VDW
Sbjct: 63 LAAKEALNGAEIMGQTIQVDWCFV 86
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 57.6 bits (139), Expect = 6e-12
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
+ +SNL S+ D+++L +FG K + D++ G A +HF+ KADA KA++
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGR-SLGTADVHFERKADALKAMKQY 61
Query: 228 NGYGYDHLILSVDWSKS 244
NG D +++ S
Sbjct: 62 NGVPLDGRPMNIQLVTS 78
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 57.7 bits (139), Expect = 7e-12
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAA 221
+ + + NLS + +E + L Q GP + + T+ F + F DAA
Sbjct: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCF--VEFYEHRDAA 62
Query: 222 KAIQYLNGYGYDHLILSVDWSKS 244
A+ +NG + V+W+ +
Sbjct: 63 AALAAMNGRKILGKEVKVNWATT 85
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 57.8 bits (139), Expect = 7e-12
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 150 GGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGF 209
GG + G + I + NL + D+ED+ ++G + L + F
Sbjct: 2 GGGVIRGPAGNND---CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG---GPPF 55
Query: 210 AYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKS 244
A++ F++ DA A+ +GY YD L V++ +S
Sbjct: 56 AFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 90
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 56.1 bits (135), Expect = 3e-11
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 2/85 (2%)
Query: 160 RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKAD 219
R T+ + + L T+E DL++ FG + + +D G KGF ++ F
Sbjct: 3 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYET 62
Query: 220 AAKAIQYLNGYGYDHLILSVDWSKS 244
K + + D S
Sbjct: 63 QVKVMS--QRHMIDGRWCDCKLPNS 85
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 56.2 bits (135), Expect = 3e-11
Identities = 17/76 (22%), Positives = 32/76 (42%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
+ + L+ + L FG + + + D +GFA++ F+ DAA AI +
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 228 NGYGYDHLILSVDWSK 243
N + V+ +K
Sbjct: 68 NESELFGRTIRVNLAK 83
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 55.8 bits (134), Expect = 3e-11
Identities = 20/75 (26%), Positives = 34/75 (45%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
I L +++ +++L+ FGP L +D GL KG+A+ + + +AI LNG
Sbjct: 6 IGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 65
Query: 230 YGYDHLILSVDWSKS 244
L V +
Sbjct: 66 MQLGDKKLLVQRASV 80
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 55.8 bits (134), Expect = 5e-11
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 159 ARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKA 218
+++ + NLS N +E++L+++ + + + +G KG AYI FK++A
Sbjct: 10 SKKVRAARTLLAKNLSFNITEDELKEVFEDA-----LEIRLVSQDGKSKGIAYIEFKSEA 64
Query: 219 DAAKAIQYLNGYGYDHLILSVDWSKS 244
DA K ++ G D +S+ ++
Sbjct: 65 DAEKNLEEKQGAEIDGRSVSLYYTGE 90
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 55.1 bits (132), Expect = 6e-11
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
+ +S L ++ +LE L Q+G + D+ G+ +G +I F + +A +A
Sbjct: 5 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 64
Query: 224 IQYLNGYGYD--HLILSVDWS 242
I+ LNG ++V ++
Sbjct: 65 IKGLNGQKPSGATEPITVKFA 85
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 55.5 bits (133), Expect = 7e-11
Identities = 11/82 (13%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKM--YLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
I + ++ + + + + +GFA++ +++ AA A + L
Sbjct: 6 IGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKL 65
Query: 228 NGYGY--DHLILSVDWSKSTNQ 247
++VDW++
Sbjct: 66 MPGRIQLWGHQIAVDWAEPEID 87
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 54.3 bits (130), Expect = 1e-10
Identities = 22/77 (28%), Positives = 43/77 (55%)
Query: 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAK 222
D + + LS+ T+E DL ++ ++GP + + + D+ + +GFA+++F+N DA +
Sbjct: 7 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 66
Query: 223 AIQYLNGYGYDHLILSV 239
A + NG D + V
Sbjct: 67 AKERANGMELDGRRIRV 83
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 54.6 bits (131), Expect = 1e-10
Identities = 13/86 (15%), Positives = 33/86 (38%), Gaps = 6/86 (6%)
Query: 160 RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKAD 219
+ + + ++ ++ + FG ++ + KG++++ F
Sbjct: 13 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP------EKGYSFVRFSTHES 66
Query: 220 AAKAIQYLNGYGYDHLILSVDWSKST 245
AA AI +NG + ++ W K +
Sbjct: 67 AAHAIVSVNGTTIEGHVVKCYWGKES 92
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 54.3 bits (130), Expect = 2e-10
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Query: 148 GPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCK 207
G G + EG + + I +L + DL + FG + DK L K
Sbjct: 7 GAAGSQKEG------PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSK 60
Query: 208 GFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTNQ 247
F ++ + N A AIQ +NG+ L V +S N
Sbjct: 61 CFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKND 100
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 54.3 bits (130), Expect = 2e-10
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 160 RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKAD 219
R + + I LS T+E L + +Q+G + + RD + +GF ++ F + A+
Sbjct: 15 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74
Query: 220 AAKAIQYLNGYGYDHLILSVDWSKS 244
A+ + D ++ + +
Sbjct: 75 VDAAMA-ARPHSIDGRVVEPKRAVA 98
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 54.1 bits (130), Expect = 2e-10
Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 162 NDDTTAIRISNLSV-NTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADA 220
+ + I NL+ ++D+E + ++G + KGFA++ + N+ +A
Sbjct: 12 RSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV--------HKGFAFVQYVNERNA 63
Query: 221 AKAIQYLNGYGYDHLILSVDWSKS 244
A+ +G +L ++ +
Sbjct: 64 RAAVAGEDGRMIAGQVLDINLAAE 87
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 53.5 bits (128), Expect = 3e-10
Identities = 13/76 (17%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 170 ISNLSVNTSENDLEDLVKQ-FGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLN 228
I+NL+ +++L+ + F ++ + +G A++ FK + A A++ +
Sbjct: 8 INNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQ 67
Query: 229 GYGYDHLILSVDWSKS 244
G+ + + + ++K+
Sbjct: 68 GFPFYDKPMRIQYAKT 83
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 55.8 bits (133), Expect = 3e-10
Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
Query: 153 RVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYI 212
R + + I + + +T E+ L D +Q+G + + D+ +G +GFA++
Sbjct: 85 REDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 144
Query: 213 HFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTNQ 247
F + K + + + V + S +
Sbjct: 145 TFDDHDSVDKIVI-QKYHTVNGHNCEVRKALSKQE 178
Score = 44.6 bits (104), Expect = 2e-06
Identities = 12/65 (18%), Positives = 24/65 (36%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
I LS T++ L +Q+G + + RD +GF ++ + + A+
Sbjct: 11 IGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPH 70
Query: 230 YGYDH 234
Sbjct: 71 KVDGR 75
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 52.7 bits (126), Expect = 4e-10
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
I LS T++ L + QFG + + RD +GF ++ F ++A K + +
Sbjct: 5 IGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA-QSR 63
Query: 230 YGYDHLILSVDW 241
+ D +
Sbjct: 64 HELDSKTIDPKV 75
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 52.9 bits (126), Expect = 4e-10
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
+ T + ++N + ++ ++ DL++ + + FAYI +K DA
Sbjct: 1 ECT-LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYC 59
Query: 224 IQYLNGYGYDHLILSVDWSK 243
++ LNG + L S
Sbjct: 60 VEKLNGLKIEGYTLVTKVSN 79
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 53.2 bits (127), Expect = 4e-10
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 158 NARRNDDTTAIRISNLSVNTSENDLEDLVKQFGP--------TSKMYLSRDKTNGLCKGF 209
+ + D +AI + L+ + + +DL D KQ G +++ DK G KG
Sbjct: 1 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGD 60
Query: 210 AYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKS 244
A + +++ A A+++ +G + L V ++
Sbjct: 61 ATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARK 95
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 53.1 bits (127), Expect = 5e-10
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
I + NL + + L + +FG K+ + A + + + A A L
Sbjct: 10 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSL 65
Query: 228 NGY--GYDHLILSVDWSKSTN 246
+G L +D+SK T+
Sbjct: 66 DGQNIYNACCTLRIDFSKLTS 86
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 52.8 bits (126), Expect = 5e-10
Identities = 25/82 (30%), Positives = 39/82 (47%)
Query: 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAK 222
+ + + NLS +SE DLE L +GP S+++ D KGFA++ F A K
Sbjct: 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVK 65
Query: 223 AIQYLNGYGYDHLILSVDWSKS 244
A ++G + +L V S
Sbjct: 66 AYAEVDGQVFQGRMLHVLPSTI 87
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 52.4 bits (125), Expect = 6e-10
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
+ I NLS + +DL L + L G+A++ + ++ A +AI+ L
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRKLPLAGQV------LLKSGYAFVDYPDQNWAIRAIETL 57
Query: 228 NG-YGYDHLILSVDWSKSTNQ 247
+G I+ VD+S S
Sbjct: 58 SGKVELHGKIMEVDYSVSKKL 78
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 52.3 bits (125), Expect = 6e-10
Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
+ + NL + +E ++ L +++G +++ KGF +I + + A A L
Sbjct: 11 LFVGNLPPDITEEEMRKLFEKYGKAGEVF------IHKDKGFGFIRLETRTLAEIAKVEL 64
Query: 228 NGYGYDHLILSVDWSKS 244
+ L V ++
Sbjct: 65 DNMPLRGKQLRVRFACH 81
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 52.4 bits (125), Expect = 7e-10
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 158 NARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNK 217
N+ + +SN+ + DL + QFG + + ++ KGF ++ F+N
Sbjct: 4 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS--KGFGFVTFENS 61
Query: 218 ADAAKAIQYLNGYGYDHLILSVDWSKS 244
ADA +A + L+G + + V+ + +
Sbjct: 62 ADADRAREKLHGTVVEGRKIEVNNATA 88
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 52.1 bits (124), Expect = 8e-10
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMY-LSRDKTNGLCKGFAYIHFKNKADAAKAIQYLN 228
I NL E L D FG + + RD G KG+A+I+F + + AI+ +N
Sbjct: 3 IGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN 62
Query: 229 GYGYDHLILSVDWSKS 244
G + ++V ++
Sbjct: 63 GQYLCNRPITVSYAFK 78
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 53.4 bits (127), Expect = 9e-10
Identities = 19/85 (22%), Positives = 41/85 (48%)
Query: 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAK 222
D + ++ + E L L +++GP + + D+ +G+ ++ F++ + A +
Sbjct: 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQ 99
Query: 223 AIQYLNGYGYDHLILSVDWSKSTNQ 247
AI LNG+ + L V + S +Q
Sbjct: 100 AIAGLNGFNILNKRLKVALAASGHQ 124
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 52.0 bits (124), Expect = 1e-09
Identities = 13/77 (16%), Positives = 30/77 (38%)
Query: 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAI 224
T I++ N+ S +++ D + + G+ G A + F+++ +A A+
Sbjct: 9 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAV 68
Query: 225 QYLNGYGYDHLILSVDW 241
LN + +
Sbjct: 69 IDLNDRPIGSRKVKLVL 85
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 51.7 bits (123), Expect = 1e-09
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + + LS +T+E LE + ++G S++ + +D+ +GF ++ F+N DA A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 224 IQYLNGYGYDHLILSVDWSKSTN 246
+ +NG D + VD + ++
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSS 86
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 52.0 bits (124), Expect = 1e-09
Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 158 NARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNK 217
++++ T I + L +T++ L + FG + + D+ G +G+ ++ ++
Sbjct: 3 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 62
Query: 218 ADAAKAIQYLNGYGYDHLILSVDWSKSTNQ 247
A A +A + N D +V+ + +
Sbjct: 63 AAAERACKDPNPI-IDGRKANVNLAYLGAK 91
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 51.3 bits (122), Expect = 3e-09
Identities = 20/83 (24%), Positives = 40/83 (48%)
Query: 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAA 221
+ ++ + N+ +E L+D+ + GP L D+ G KG+ + ++++ A
Sbjct: 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 64
Query: 222 KAIQYLNGYGYDHLILSVDWSKS 244
A++ LNG + L VD + S
Sbjct: 65 SAMRNLNGREFSGRALRVDNAAS 87
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 50.8 bits (121), Expect = 3e-09
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 159 ARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKA 218
+ R I I NL + L D FG + D+ + ++HF+ +
Sbjct: 2 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG--YGFVHFETQE 59
Query: 219 DAAKAIQYLNGYGYDHLILSVDWSKS 244
A +AI+ +NG + + V KS
Sbjct: 60 AAERAIEKMNGMLLNDRKVFVGRFKS 85
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 49.0 bits (116), Expect = 7e-09
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
I L T++ DL L + +G DKT CKG+ ++ F + + A KA+ L
Sbjct: 3 IRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA 62
Query: 230 YGYD 233
G
Sbjct: 63 SGVQ 66
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 48.4 bits (115), Expect = 1e-08
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAI----Q 225
+ LS +T E + + FG + L D +GF +I FK + K +
Sbjct: 4 VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYH 63
Query: 226 YLNG 229
+
Sbjct: 64 NVGL 67
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 48.9 bits (116), Expect = 2e-08
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D + L+ DLED G + + D+ + KG AY+ F A
Sbjct: 17 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLA 76
Query: 224 IQYLNGYGYDHLILSVDWSKS 244
I L G + + V S++
Sbjct: 77 IG-LTGQRLLGVPIIVQASQA 96
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 47.9 bits (113), Expect = 3e-08
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 163 DDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAK 222
+ + I NLS ++ E L ++++QFG + + KG A+ F + A K
Sbjct: 6 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQK 65
Query: 223 AIQYLN------GYGYDHLILSVDWSKSTNQ 247
+ + G D L VD + + ++
Sbjct: 66 CLAAASLEAEGGGLKLDGRQLKVDLAVTRDE 96
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 47.4 bits (112), Expect = 4e-08
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
++ I + NL +++ ++ DL+K + K A++ N A A
Sbjct: 4 GSSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDR-------NKRTAFVTLLNGEQAQNA 56
Query: 224 IQYLNGYGYDHLILSVDWSKS 244
IQ + Y + L V +
Sbjct: 57 IQMFHQYSFRGKDLIVQLQPT 77
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 46.9 bits (111), Expect = 5e-08
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
I LS +T++ DL+D +FG L D G +GF ++ FK K +
Sbjct: 4 IGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD-QKE 62
Query: 230 YGYDHLILSV 239
+ + ++
Sbjct: 63 HKLNGKVIDP 72
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 47.5 bits (112), Expect = 6e-08
Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 158 NARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNK 217
+ + + + + L + E DL + +++FG + + K A + F+N
Sbjct: 8 SHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP------FKRQALVEFENI 61
Query: 218 ADAAKAIQYLNGYGY--DHLILSVDWSKS 244
A + + + ++S S
Sbjct: 62 DSAKECVTFAADVPVYIAGQQAFFNYSTS 90
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 47.0 bits (111), Expect = 6e-08
Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
I LS T++ L +Q+G + + RD +GF ++ + + A+
Sbjct: 11 IGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARP 69
Query: 230 YGYDHLILSVDWSKS 244
+ D ++ + S
Sbjct: 70 HKVDGRVVEPKRAVS 84
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 46.3 bits (109), Expect = 1e-07
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 158 NARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNK 217
+ + + + NLS +E DL L +F + G +G A+I F NK
Sbjct: 11 SYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNK 70
Query: 218 ADAAKAIQYLNGYGYDHLILSVDWSKS 244
A +A+ +NGY IL +++ K+
Sbjct: 71 EIAWQALHLVNGYKLYGKILVIEFGKN 97
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 45.8 bits (108), Expect = 2e-07
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 161 RNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADA 220
+ + TT + + L NTS L +FG + + FAYI +++ A
Sbjct: 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTID------HVKGDSFAYIQYESLDAA 66
Query: 221 AKAIQYLNGY--GYDHLILSVDWSKS 244
A + G+ G L VD++KS
Sbjct: 67 QAACAKMRGFPLGGPDRRLRVDFAKS 92
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 45.8 bits (108), Expect = 2e-07
Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
+ + + E ++ +++G +M + + G Y+ F+ + DA KA
Sbjct: 26 AVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKA 84
Query: 224 IQYLNGYGYDHLILSVDWS 242
+ LN ++ + + S
Sbjct: 85 VIDLNNRWFNGQPIHAELS 103
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 45.6 bits (107), Expect = 2e-07
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 1/86 (1%)
Query: 158 NARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNK 217
N+ + +R+ L S+ ++ G G A++ F ++
Sbjct: 8 NSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQ 67
Query: 218 ADAAKAIQYLNGYGYDHLILSVDWSK 243
A KA+ + H + + S
Sbjct: 68 EIAEKAL-KKHKERIGHRYIEIFKSS 92
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 45.5 bits (107), Expect = 3e-07
Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 7/100 (7%)
Query: 148 GPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCK 207
G G R+ + NL + +E +++ + ++ K
Sbjct: 4 GSSGSRLPKSPPYT------AFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLK 57
Query: 208 GFAYIHFKNKADAAKAIQYLNGYGYDHLILSVDWSKSTNQ 247
GF Y F++ A+ LN + + VD +
Sbjct: 58 GFGYAEFEDLDSLLSALS-LNEESLGNKRIRVDVADQAQD 96
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 45.0 bits (106), Expect = 3e-07
Identities = 8/83 (9%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 162 NDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAA 221
+ ++ + + + + +E++L + Q+G + FA++ F + A
Sbjct: 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDV-----MDVFIPKPFRAFAFVTFADDQIAQ 56
Query: 222 KAIQYLNGYGYDHLILSVDWSKS 244
+ + + ++
Sbjct: 57 SLCG--EDLIIKGISVHISNAEP 77
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 45.1 bits (106), Expect = 4e-07
Identities = 10/79 (12%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Query: 152 KRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAY 211
+ + + L S N L ++++ G + K +++
Sbjct: 7 RHEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALL------MPPNKPYSF 60
Query: 212 IHFKNKADAAKAIQYLNGY 230
++ ++ +A LNG
Sbjct: 61 ARYRTTEESKRAYVTLNGK 79
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 44.3 bits (104), Expect = 4e-07
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
I + LSVNT+ D++ +QFG L DKT +GF ++ F+++ K + +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-I 60
Query: 228 NGYGYDHLILSVDW 241
+ + ++ ++
Sbjct: 61 HFHEINNKMVECKK 74
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 44.9 bits (106), Expect = 4e-07
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 172 NLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNGYG 231
L +N DL +FG K+ L G A + F++ +A IQ L+G
Sbjct: 26 PLVLNEIREDLRVECSKFGQIRKLLLFDRH----PDGVASVSFRDPEEADYCIQTLDGRW 81
Query: 232 YDHLILSVDWSK 243
+ ++
Sbjct: 82 FGGRQITAQAWD 93
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 43.9 bits (103), Expect = 7e-07
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
+ NL ++TSE +E P + + + +A++HF N+ DA +A++ LNG
Sbjct: 13 VRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVEAMKALNG 66
Query: 230 YGYDHLILSVDWSKSTNQ 247
D + V +K ++
Sbjct: 67 KVLDGSPIEVTLAKPVDK 84
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 43.6 bits (102), Expect = 1e-06
Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 3/90 (3%)
Query: 155 EGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHF 214
++ ++ + + L +END+ + P +G G A + F
Sbjct: 5 SSGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIE--IGPDGRVTGEADVEF 62
Query: 215 KNKADAAKAIQYLNGYGYDHLILSVDWSKS 244
DA A+ + H + + + +
Sbjct: 63 ATHEDAVAAMA-KDKANMQHRYVELFLNST 91
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 43.2 bits (101), Expect = 2e-06
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 160 RRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKAD 219
++ D T + ISNL ++ E +LE+++K FG ++G +G + ++
Sbjct: 13 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQV-ISTRILRDSSGTSRGVGFARMESTEK 71
Query: 220 AAKAIQYLNGYGYDHLILSVDWSK 243
I + NG ++
Sbjct: 72 CEAVIGHFNGKFIKTPPGVSAPTE 95
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 42.3 bits (99), Expect = 2e-06
Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
+ + + + L FG D + + A++ ++ A +A+ L
Sbjct: 8 LYVYGEDM--TPTLLRGAFSPFGNI------IDLSMDPPRNCAFVTYEKMESADQAVAEL 59
Query: 228 NGYGYDHLILSVDWSK 243
NG + + L V+ ++
Sbjct: 60 NGTQVESVQLKVNIAR 75
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 42.5 bits (99), Expect = 3e-06
Identities = 9/87 (10%), Positives = 29/87 (33%), Gaps = 11/87 (12%)
Query: 165 TTAIRISNLSV-----NTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKAD 219
++ + + + + E L + + + + I+F N
Sbjct: 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK------SFKRVRINFSNPLS 58
Query: 220 AAKAIQYLNGYGYDHLILSVDWSKSTN 246
AA A L+ + + + ++++ +
Sbjct: 59 AADARLRLHKTEFLGKEMKLYFAQTLH 85
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 41.5 bits (97), Expect = 7e-06
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGL--CKGFAYIHFKNKADAAKAIQYL 227
+ + D+ D ++G + + R G ++ F + D KA+Q L
Sbjct: 19 LDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGL 78
Query: 228 NGYGYDHLILSVDWS 242
G + + ++ +
Sbjct: 79 TGRKFANRVVVTKYC 93
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 41.2 bits (96), Expect = 8e-06
Identities = 16/88 (18%), Positives = 25/88 (28%), Gaps = 9/88 (10%)
Query: 160 RRNDDTTAIRISNL-SVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKA 218
R + + I + L LV+ FG S + A+I
Sbjct: 3 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN------KINEAFIEMATTE 56
Query: 219 DAAKAIQY--LNGYGYDHLILSVDWSKS 244
DA A+ Y + V S+
Sbjct: 57 DAQAAVDYYTTTPALVFGKPVRVHLSQK 84
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 40.5 bits (94), Expect = 1e-05
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 165 TTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAI 224
+ + +SN+ + SE DL+ L G + K + A I + +A +A+
Sbjct: 10 SATLHLSNIPPSVSEEDLKVLFSSNGG----VVKGFKFFQKDRKMALIQMGSVEEAVQAL 65
Query: 225 QYLNGYG-YDHLILSVDWSKST 245
L+ + ++ L V +SKST
Sbjct: 66 IDLHNHDLGENHHLRVSFSKST 87
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 39.8 bits (92), Expect = 2e-05
Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 168 IRISNLSVNTSENDL---EDLVKQFGPTSKMYLSRDKTNGLC---KGFAYIHFKNKADAA 221
+ + LS ++ ++ + +FG K+ ++ + AY+ + DA
Sbjct: 11 VFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDAL 70
Query: 222 KAIQYLNGYGYDHLILSV 239
+AIQ +N D L
Sbjct: 71 RAIQCVNNVVVDGRTLKA 88
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 39.9 bits (92), Expect = 3e-05
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 156 GYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFK 215
G + T I NL T ++++ +FG ++ A + F
Sbjct: 1 GSSGSSGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVL------LPEGGITAIVEFL 54
Query: 216 NKADAAKAIQYLNGYGYDHLILSVDWSKS 244
+A KA ++L + H+ L ++W+
Sbjct: 55 EPLEARKAFRHLAYSKFHHVPLYLEWAPI 83
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 39.3 bits (91), Expect = 3e-05
Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 12/90 (13%)
Query: 159 ARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSR-----DKTNGLCKGFAYIH 213
ARR + + N+ +E + D + + K FA++
Sbjct: 1 ARR------LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLE 54
Query: 214 FKNKADAAKAIQYLNGYGYDHLILSVDWSK 243
F++ + +A+ +G + L +
Sbjct: 55 FRSVDETTQAM-AFDGIIFQGQSLKIRRPH 83
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 39.8 bits (92), Expect = 3e-05
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
+ +S L + S DL+D +++ G + G + + K D A++ L
Sbjct: 18 VLVSGLPPSGSWQDLKDHMREAGDVCYADVQ-------KDGMGMVEYLRKEDMEYALRKL 70
Query: 228 NGYGYDHLILSVDWSK 243
+ + + +
Sbjct: 71 DDTKFRSHEGETSYIR 86
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 38.7 bits (89), Expect = 9e-05
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 1/82 (1%)
Query: 149 PGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKG 208
P G++ + + + L + D K+ NG G
Sbjct: 3 PSGQKRSRSRSPHEAGFC-VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 61
Query: 209 FAYIHFKNKADAAKAIQYLNGY 230
++ F+N+AD A+ Y
Sbjct: 62 EGFVEFRNEADYKAALCRHKQY 83
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 37.8 bits (87), Expect = 2e-04
Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 166 TAIRISNLSV-NTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAI 224
+ + +SNL+ + L L +G ++ + + K A + + A A+
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN-----KKENALVQMADGNQAQLAM 57
Query: 225 QYLNGYGYDHLILSVDWSKSTN 246
+LNG+ + + SK N
Sbjct: 58 SHLNGHKLHGKPIRITLSKHQN 79
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 34.5 bits (78), Expect = 0.001
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 7/75 (9%)
Query: 170 ISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYLNG 229
I L + + ++ DL+ + KG A++ N A AI +
Sbjct: 3 IRGLPGDVTNQEVHDLLSDYELKYCF-------VDKYKGTAFVTLLNGEQAEAAINTFHQ 55
Query: 230 YGYDHLILSVDWSKS 244
LSV +
Sbjct: 56 SRLRERELSVQLQPT 70
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 33.8 bits (77), Expect = 0.002
Identities = 8/65 (12%), Positives = 21/65 (32%), Gaps = 7/65 (10%)
Query: 164 DTTAIRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKA 223
D T + + ++ L + + + + +I +++K A KA
Sbjct: 3 DDTWVTVFGFPQASASYILLQFAQYGNILKHVMSNT-------GNWMHIRYQSKLQARKA 55
Query: 224 IQYLN 228
+
Sbjct: 56 LSKDG 60
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 33.7 bits (76), Expect = 0.003
Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 8/79 (10%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
+ I L +E ++ L FG + + K A++ + A + Y
Sbjct: 11 LHIRKLPGEVTETEVIALGLPFGKVTNIL------MLKGKNQAFLELATEEAAITMVNYY 64
Query: 228 NGYGYDHL--ILSVDWSKS 244
+ + + +S
Sbjct: 65 SAVTPHLRNQPIYIQYSNH 83
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 33.3 bits (75), Expect = 0.005
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
+ +S L + S DL+D +++ G + G + F K D A++ L
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREAGDVCYADVY-------RDGTGVVEFVRKEDMTYAVRKL 55
Query: 228 NGYGYDHLILSVDWSK 243
+ + + +
Sbjct: 56 DNTKFRSHEGETAYIR 71
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 32.5 bits (73), Expect = 0.007
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 168 IRISNLSVNTSENDLEDLVKQFGPTSKMYLSRDKTNGLCKGFAYIHFKNKADAAKAIQYL 227
+ ++NL T+E L L QF ++ L + A++ F + + A + L
Sbjct: 11 LFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPN-----RHDIAFVEFTTELQSNAAKEAL 65
Query: 228 NGYGYDH-LILSVDWSK 243
G+ + + ++K
Sbjct: 66 QGFKITPTHAMKITFAK 82
>d1hq1a_ a.36.1.1 (A:) Signal sequence binding protein Ffh
{Escherichia coli [TaxId: 562]}
Length = 104
Score = 28.7 bits (64), Expect = 0.25
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 155 EGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKM 195
E + RI+ S D+ L+KQF +M
Sbjct: 60 ERAKPEIIKGSRKRRIAAGSG-MQVQDVNRLLKQFDDMQRM 99
>d1qb2a_ a.36.1.1 (A:) SRP54M {Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 26.1 bits (57), Expect = 2.0
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 146 REGPGGKRVEGYNARRNDDTTAIRISNLSVNTSENDLEDLVKQFGPTSKM 195
+ G +V R R++ S S D+++L+ Q+ ++M
Sbjct: 62 LDSTDGAKVFSKQPGR-----IQRVARGS-GVSTRDVQELLTQYTKFAQM 105
>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 24.7 bits (54), Expect = 4.7
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 166 TAIRISNLSVNTSENDLEDLVKQFGP-TSKMYLSRDKTNGLCK-GFAYIHFKNKADAAKA 223
+ + I L ++ L++ ++ + S D + AYI+FKN+ D
Sbjct: 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILF 61
Query: 224 IQYLNGY 230
+GY
Sbjct: 62 RDRFDGY 68
>d1dula_ a.36.1.1 (A:) Signal sequence binding protein Ffh
{Escherichia coli [TaxId: 562]}
Length = 69
Score = 23.9 bits (52), Expect = 5.7
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 169 RISNLSVNTSENDLEDLVKQFGPTSKM 195
RI+ S D+ L+KQF +M
Sbjct: 40 RIAAGS-GMQVQDVNRLLKQFDDMQRM 65
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.131 0.380
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 883,336
Number of extensions: 40231
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 85
Length of query: 247
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 164
Effective length of database: 1,268,006
Effective search space: 207952984
Effective search space used: 207952984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.5 bits)