BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1323
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WJS|A Chain A, Crystal Structure Of The Lg1-3 Region Of The Laminin
Alpha2 Chain
Length = 608
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 9 ISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLN 68
+ F+FRT LL+Y + +D + + V + G +KV + G TS+ + N
Sbjct: 229 VMFKFRTFSSSALLMYLATRDLKDFMS-----VELSDGHVKVSYDLGSGMTSVVSNQNHN 283
Query: 69 RDKWHS-VMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEE 127
KW + + RI I +D+ +E + N N+G+ + GGL
Sbjct: 284 DGKWKAFTLSRIQKQANISIVDIDSNQEENVATSSSGN-NFGLDLKADDKIYFGGLPTLR 342
Query: 128 KLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGC 175
L + ++ + GC+KD+ +S P L + + V +GC
Sbjct: 343 NLR-PEVNVKKYSGCLKDIEISR-------TPYNILSSPDYVGVTKGC 382
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 36/162 (22%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKV-VHVFGKHSTSITVGEG 66
E+SFQ +TR GL++Y EG + ++ G+L++ +F ++
Sbjct: 23 EMSFQLKTRSARGLVLYFD----DEGFCDFLELILTRGGRLQLSFSIFCAEPATLLTDTP 78
Query: 67 LNRDKWHSVMVR---------INVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSV 117
+N WH+V +R I+ AK + R D T+ GL
Sbjct: 79 VNDGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKSKRRDMTVFSGL--------------- 123
Query: 118 VLIGGLSPEEKLHGVKYII------ESFIGCIKDMVLSAGKA 153
+GGL PE + +K + E F G I+D+ +++ A
Sbjct: 124 -FVGGLPPELRAAALKLTLASVREREPFKGWIRDVRVNSSLA 164
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 27/178 (15%)
Query: 11 FQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVE--KGQLKVVHVFGKHSTSI--TVGEG 66
FQF+T GL++Y+S +G D +++VE KG L V G + I + +
Sbjct: 873 FQFKTTSLDGLILYNS----GDGND----FIVVELVKGYLHYVFDLGNGANLIKGSSNKP 924
Query: 67 LNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPE 126
LN ++WH+VM+ + + ++D + I G DL S + IGG++ E
Sbjct: 925 LNDNQWHNVMISRDTSNLHTV-KIDTKITTQITAG-------ARNLDLKSDLYIGGVAKE 976
Query: 127 --EKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGCIDKKSPC 182
+ L + + E F GC+ + L+ DL+ + +E GC + C
Sbjct: 977 TYKSLPKLVHAKEGFQGCLASVDLNG--RLPDLISDALFC---NGQIERGCEGPSTTC 1029
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGL----DPYALYVIVEKGQLKVVHVFGKHSTSITV 63
++S +FR++ +G+L+ + +D + L D + + V +++ K ++
Sbjct: 683 DVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLDCIRINCNSSKGPETLFA 742
Query: 64 GEGLNRDKWHSVMVRINVHGAKLIARVDNR 93
G LN ++WH+ VR+ G L VD++
Sbjct: 743 GYNLNDNEWHT--VRVVRRGKSLKLTVDDQ 770
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 32/161 (19%)
Query: 9 ISFQFRTRLPHGLLVYHSVKDR-------PEGLDPYALYVIVEKGQLKVVHVFGKHSTSI 61
ISF FRT P+GL+++ K R P+ + + + G L ++ G + I
Sbjct: 446 ISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIKI 505
Query: 62 -TVGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGL-DPNTNYGVTS--DLTSV 117
+ + +N +W+ V + D R+ + L P T G + DL
Sbjct: 506 KALQKKVNDGEWYHVDF-----------QRDGRSGTISVNTLRTPYTAPGESEILDLDDE 554
Query: 118 VLIGGLSPEEKLHGVKYIIE--------SFIGCIKDMVLSA 150
+ +GGL PE K G+ + E ++GCI+D+ +
Sbjct: 555 LYLGGL-PENK-AGLVFPTEVWTALLNYGYVGCIRDLFIDG 593
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 36/162 (22%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKV-VHVFGKHSTSITVGEG 66
E+SFQ +TR GL++Y EG + ++ G+L++ +F ++
Sbjct: 23 EMSFQLKTRSARGLVLYFD----DEGFCDFLELILTRGGRLQLSFSIFCAEPATLLTDTP 78
Query: 67 LNRDKWHSVMVR---------INVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSV 117
+N WH+V +R I+ AK + R D T+ GL
Sbjct: 79 VNDGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKSKRRDMTVFSGL--------------- 123
Query: 118 VLIGGLSPEEKLHGVKYII------ESFIGCIKDMVLSAGKA 153
+GGL PE + +K + E F G I+D+ + + A
Sbjct: 124 -FVGGLPPELRAAALKLTLASVREREPFKGWIRDVRVQSSLA 164
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 27/178 (15%)
Query: 11 FQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVE--KGQLKVVHVFGKHSTSI--TVGEG 66
FQF+T GL++Y+S +G D +++VE KG L V G + I + +
Sbjct: 864 FQFKTTSLDGLILYNS----GDGND----FIVVELVKGYLHYVFDLGNGANLIKGSSNKP 915
Query: 67 LNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPE 126
LN ++WH+VM+ + + ++D + I G DL S + IGG++ E
Sbjct: 916 LNDNQWHNVMISRDTSNLHTV-KIDTKITTQITAG-------ARNLDLKSDLYIGGVAKE 967
Query: 127 --EKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGCIDKKSPC 182
+ L + + E F GC+ + L+ DL+ + +E GC + C
Sbjct: 968 TYKSLPKLVHAKEGFQGCLASVDLNG--RLPDLISDALFC---NGQIERGCEGPSTTC 1020
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGL 67
++S +FR++ +G+L+ + +D + L + ++ G++K+ GK ++ G L
Sbjct: 683 DVSLRFRSQRAYGILMATTSRDSAD-----TLRLELDAGRVKLTVNLGKGPETLFAGYNL 737
Query: 68 NRDKWHSVMVRINVHGAKLIARVDNR 93
N ++WH+ VR+ G L VD++
Sbjct: 738 NDNEWHT--VRVVRRGKSLKLTVDDQ 761
Score = 29.6 bits (65), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 32/161 (19%)
Query: 9 ISFQFRTRLPHGLLVYHSVKDR-------PEGLDPYALYVIVEKGQLKVVHVFGKHSTSI 61
ISF FRT P+GL+++ K R P+ + + + G L ++ G + I
Sbjct: 446 ISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIKI 505
Query: 62 -TVGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGL-DPNTNYGVTS--DLTSV 117
+ + +N +W+ V + D R+ + L P T G + DL
Sbjct: 506 KALQKKVNDGEWYHVDF-----------QRDGRSGTISVNTLRTPYTAPGESEILDLDDE 554
Query: 118 VLIGGLSPEEKLHGVKYIIE--------SFIGCIKDMVLSA 150
+ +GGL PE K G+ + E ++GCI+D+ +
Sbjct: 555 LYLGGL-PENK-AGLVFPTEVWTALLNYGYVGCIRDLFIDG 593
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 27/178 (15%)
Query: 11 FQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVE--KGQLKVVHVFGKHSTSI--TVGEG 66
FQF+T GL++Y+S +G D +++VE KG L V G + I + +
Sbjct: 648 FQFKTTSLDGLILYNS----GDGND----FIVVELVKGYLHYVFDLGNGANLIKGSSNKP 699
Query: 67 LNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPE 126
LN ++WH+VM+ + + ++D + I G DL S + IGG++ E
Sbjct: 700 LNDNQWHNVMISRDTSNLHTV-KIDTKITTQITAG-------ARNLDLKSDLYIGGVAKE 751
Query: 127 --EKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGCIDKKSPC 182
+ L + + E F GC+ + L+ DL+ + +E GC + C
Sbjct: 752 TYKSLPKLVHAKEGFQGCLASVDLNG--RLPDLISDALFC---NGQIERGCEGPSTTC 804
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 7 REISFQFRTRLPHGLLVYHSVKDRPEGL----DPYALYVIVEKGQLKVVHVFGKHSTSIT 62
++S +FR++ +G+L+ + +D + L D + + V +++ K ++
Sbjct: 457 EDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLDCIRINCNSSKGPETLF 516
Query: 63 VGEGLNRDKWHSVMVRINVHGAKLIARVDNR 93
G LN ++WH+ VR+ G L VD++
Sbjct: 517 AGYNLNDNEWHT--VRVVRRGKSLKLTVDDQ 545
Score = 29.6 bits (65), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 32/161 (19%)
Query: 9 ISFQFRTRLPHGLLVYHSVKDR-------PEGLDPYALYVIVEKGQLKVVHVFGKHSTSI 61
ISF FRT P+GL+++ K R P+ + + + G L ++ G + I
Sbjct: 221 ISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIKI 280
Query: 62 -TVGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGL-DPNTNYGVTS--DLTSV 117
+ + +N +W+ V + D R+ + L P T G + DL
Sbjct: 281 KALQKKVNDGEWYHVDF-----------QRDGRSGTISVNTLRTPYTAPGESEILDLDDE 329
Query: 118 VLIGGLSPEEKLHGVKYIIE--------SFIGCIKDMVLSA 150
+ +GGL PE K G+ + E ++GCI+D+ +
Sbjct: 330 LYLGGL-PENKA-GLVFPTEVWTALLNYGYVGCIRDLFIDG 368
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6
Length = 410
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 27/178 (15%)
Query: 11 FQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVE--KGQLKVVHVFGKHSTSI--TVGEG 66
FQF+T GL++Y+S +G D +++VE KG L V G + I + +
Sbjct: 32 FQFKTTSLDGLILYNS----GDGND----FIVVELVKGYLHYVFDLGNGANLIKGSSNKP 83
Query: 67 LNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPE 126
LN ++WH+VM+ + + ++D + I G DL S + IGG++ E
Sbjct: 84 LNDNQWHNVMISRDTSNLHTV-KIDTKITTQITAG-------ARNLDLKSDLYIGGVAKE 135
Query: 127 --EKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGCIDKKSPC 182
+ L + + E F GC+ + L+ DL+ + +E GC + C
Sbjct: 136 TYKSLPKLVHAKEGFQGCLASVDLNG--RLPDLISDALFC---NGQIERGCEGPSTTC 188
>pdb|3SH4|A Chain A, Laminin G Like Domain 3 From Human Perlecan
pdb|3SH5|A Chain A, Calcium-Bound Laminin G Like Domain 3 From Human Perlecan
Length = 195
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 10/155 (6%)
Query: 9 ISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLN 68
I + RT GLL++ V+ G + + ++ G L + G + + +N
Sbjct: 34 IELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQDGHLVFRYQLGSGEARLVSEDPIN 93
Query: 69 RDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEK 128
+WH V G + +VD E ++ G P N V + V IGG
Sbjct: 94 DGEWHRVTAL--REGRRGSIQVDG---EELVSGRSPGPNVAVNA--KGSVYIGGAPDVAT 146
Query: 129 LHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPL 163
L G ++ GC+K++VL + + + P +PL
Sbjct: 147 LTGGRF-SSGITGCVKNLVLHSARPGAP--PPQPL 178
>pdb|2R16|A Chain A, Crystal Structure Of Bovine Neurexin 1 Alpha LnsLG DOMAIN
4 (With No Splice Insert)
Length = 182
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 6 CREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGE 65
++S +FR++ +G+L+ + +D + L + ++ G++K+ GK ++ G
Sbjct: 28 AEDVSLRFRSQRAYGILMATTSRDSAD-----TLRLELDAGRVKLTVNLGKGPETLFAGY 82
Query: 66 GLNRDKWHSVMVRINVHGAKLIARVDNR 93
LN ++WH+ VR+ G L VD++
Sbjct: 83 NLNDNEWHT--VRVVRRGKSLKLTVDDQ 108
>pdb|1QU0|A Chain A, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
pdb|1QU0|B Chain B, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
pdb|1QU0|C Chain C, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
pdb|1QU0|D Chain D, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
Length = 191
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 16/146 (10%)
Query: 9 ISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGE--- 65
+ F+FRT P G+L+ S + +D + +I EK V + G+ T+I E
Sbjct: 33 VEFEFRTTRPTGVLLGISSQK----MDGMGIEMIDEKLMFHVDNGAGRF-TAIYDAEIPG 87
Query: 66 GLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSP 125
+ +WH V + K+ R++ D + PN+ ++D V +GG
Sbjct: 88 HMCNGQWHKVTAK------KIKNRLELVVDGNQVDAQSPNS-ASTSADTNDPVFVGGFPG 140
Query: 126 EEKLHGVKYIIESFIGCIKDMVLSAG 151
G+ I F GCI+ + L+ G
Sbjct: 141 GLNQFGLTTNIR-FRGCIRSLKLTKG 165
>pdb|1OKQ|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair, Ca1 Site Mutant
Length = 394
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 16/146 (10%)
Query: 9 ISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGE--- 65
+ F+FRT P G+L+ S + +D + +I EK V + G+ T+I E
Sbjct: 236 VEFEFRTTRPTGVLLGVSSQK----MDGMGIEMIDEKLMFHVDNGAGRF-TAIYDAEIPG 290
Query: 66 GLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSP 125
+ +WH V + K+ R++ D + PN+ ++D V +GG
Sbjct: 291 HMCNGQWHKVTAK------KIKNRLELVVDGNQVDAQSPNS-ASTSADTNDPVFVGGFPG 343
Query: 126 EEKLHGVKYIIESFIGCIKDMVLSAG 151
G+ I F GCI+ + L+ G
Sbjct: 344 GLNQFGLTTNIR-FRGCIRSLKLTKG 368
>pdb|1DYK|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair
Length = 394
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 16/146 (10%)
Query: 9 ISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGE--- 65
+ F+FRT P G+L+ S + +D + +I EK V + G+ T+I E
Sbjct: 236 VEFEFRTTRPTGVLLGVSSQK----MDGMGIEMIDEKLMFHVDNGAGRF-TAIYDAEIPG 290
Query: 66 GLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSP 125
+ +WH V + K+ R++ D + PN+ ++D V +GG
Sbjct: 291 HMCNGQWHKVTAK------KIKNRLELVVDGNQVDAQSPNS-ASTSADTNDPVFVGGFPG 343
Query: 126 EEKLHGVKYIIESFIGCIKDMVLSAG 151
G+ I F GCI+ + L+ G
Sbjct: 344 GLNQFGLTTNIR-FRGCIRSLKLTKG 368
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 15/139 (10%)
Query: 9 ISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLN 68
I + RT GLL Y + + + +A V + G + G TS + +N
Sbjct: 61 IELEVRTEAESGLLFYMARINHAD----FAT-VQLRNGFPYFSYDLGSGDTSTMIPTKIN 115
Query: 69 RDKWHSV-MVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEE 127
+WH + +VR+ G I VD+ + +TI + D+ ++ +GGL
Sbjct: 116 DGQWHKIKIVRVKQEG---ILYVDDASSQTI------SPKKADILDVVGILYVGGLPINY 166
Query: 128 KLHGVKYIIESFIGCIKDM 146
+ + S GC++++
Sbjct: 167 TTRRIGPVTYSLDGCVRNL 185
>pdb|3S5B|A Chain A, Crystal Structure Of Ced-3 Protease Suppressor-6 (Cps-6)
From Caenorhabditis Elegans
pdb|3S5B|B Chain B, Crystal Structure Of Ced-3 Protease Suppressor-6 (Cps-6)
From Caenorhabditis Elegans
Length = 249
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 45 KGQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINVHGAKLI 87
K QL V F + S VG G NRDKW+ + + K+I
Sbjct: 103 KSQLAVDQTFYLSNMSPQVGRGFNRDKWNDLEMHCRRVAKKMI 145
>pdb|2JD4|A Chain A, Mouse Laminin Alpha1 Chain, Domains Lg4-5
pdb|2JD4|B Chain B, Mouse Laminin Alpha1 Chain, Domains Lg4-5
Length = 383
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 68/159 (42%), Gaps = 16/159 (10%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGL 67
++ RT GL+ Y + +++ + YA + +++G+L + GK T ++ L
Sbjct: 46 QVQLSIRTFASSGLIYYVAHQNQMD----YAT-LQLQEGRLHFMFDLGKGRTKVSHPALL 100
Query: 68 NRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEE 127
+ KWH+ V+ K VD + ++ T D+ + +GGL
Sbjct: 101 SDGKWHT--VKTEYIKRKAFMTVDGQESPSVTV-----VGKATTLDVERKLYLGGLPSHY 153
Query: 128 KLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIAT 166
+ + I S CI +++++ + D +PL A+
Sbjct: 154 RARNIGTITHSIPACIGEIMVNGQQLDKD----RPLSAS 188
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 29 DRPEGLDPYALYVIVEKGQLKVVHV--FGKHSTSITVGEG 66
D + D A++ KG LK+VH+ F K ST+I EG
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEG 172
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 29 DRPEGLDPYALYVIVEKGQLKVVHV--FGKHSTSITVGEG 66
D + D A++ KG LK+VH+ F K ST+I EG
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEG 172
>pdb|2P9B|A Chain A, Crystal Structure Of Putative Prolidase From
Bifidobacterium Longum
Length = 458
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 13/95 (13%)
Query: 80 NVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESF 139
H A L V T T + Y +L +V G SP E LH + S
Sbjct: 332 QAHEAGLXIGVGTDTGXTFVP------QYATWRELELLVAYAGFSPAEALHAATAVNASI 385
Query: 140 IGCIKDM-VLSAGKAASDLL-----PIKPLIATKH 168
+G + L GK+A DLL P+ L A +H
Sbjct: 386 LGVDAETGSLEVGKSA-DLLVLNANPLDDLRALEH 419
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,540,194
Number of Sequences: 62578
Number of extensions: 224821
Number of successful extensions: 461
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 444
Number of HSP's gapped (non-prelim): 30
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)