Query psy1323
Match_columns 186
No_of_seqs 155 out of 1051
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 23:26:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v64_A Low-density lipoprotein 100.0 3.8E-30 1.3E-34 192.6 19.7 158 2-177 32-190 (191)
2 1pz7_A Agrin; structural prote 100.0 7.3E-30 2.5E-34 192.8 19.5 158 2-177 45-203 (204)
3 3sh4_A LG3 peptide; actin disa 100.0 1.6E-28 5.4E-33 184.3 16.6 146 6-161 31-184 (195)
4 2r1d_A Neurexin-1-beta, neurex 100.0 2.9E-28 9.9E-33 186.6 16.6 155 7-182 65-222 (226)
5 1d2s_A SHBG, sex hormone-bindi 100.0 2.5E-28 8.5E-33 179.5 15.5 136 6-160 27-162 (170)
6 3pve_A Agrin, AGRN protein; mR 100.0 1.9E-27 6.4E-32 177.6 19.6 144 4-159 33-176 (189)
7 1f5f_A SHBG, sex hormone-bindi 100.0 6.9E-28 2.4E-32 182.1 16.4 140 7-159 40-179 (205)
8 2r16_A Neurexin-1-alpha; beta- 100.0 1.1E-26 3.9E-31 172.4 19.7 130 4-149 26-155 (182)
9 2h0b_A Neurexin-1-alpha; B-san 100.0 5.9E-27 2E-31 174.1 16.6 140 5-159 28-170 (184)
10 3bod_A Neurexin-1-alpha; neure 99.9 9.4E-27 3.2E-31 172.2 15.7 134 6-161 30-165 (178)
11 3asi_A Neurexin-1-alpha; beta- 99.9 1.5E-26 5E-31 191.4 17.8 162 4-184 25-195 (410)
12 2r1b_A Neurexin-1-beta, neurex 99.9 2.3E-26 7.9E-31 175.5 15.5 149 7-175 37-215 (220)
13 2jd4_A Laminin subunit alpha-1 99.9 7.2E-26 2.5E-30 185.6 19.4 144 3-160 41-184 (383)
14 1dyk_A Laminin alpha 2 chain; 99.9 5.4E-26 1.8E-30 187.1 18.2 143 3-160 55-197 (394)
15 2jd4_A Laminin subunit alpha-1 99.9 1.1E-25 3.7E-30 184.5 17.3 156 3-177 218-380 (383)
16 1dyk_A Laminin alpha 2 chain; 99.9 2.2E-25 7.5E-30 183.5 18.1 157 2-177 229-393 (394)
17 1h30_A GAS6, growth-arrest-spe 99.9 1.5E-25 5.3E-30 185.9 16.1 157 4-180 60-219 (422)
18 2wjs_A Laminin subunit alpha-2 99.9 1.6E-24 5.6E-29 187.1 19.2 157 5-176 225-383 (608)
19 2wjs_A Laminin subunit alpha-2 99.9 3E-24 1E-28 185.4 18.1 158 4-176 30-194 (608)
20 3qcw_A Neurexin-1-alpha; synap 99.9 3.3E-24 1.1E-28 197.6 18.8 169 2-184 439-629 (1245)
21 3qcw_A Neurexin-1-alpha; synap 99.9 1.9E-23 6.6E-28 192.5 17.1 162 4-184 857-1027(1245)
22 1h30_A GAS6, growth-arrest-spe 99.9 2.1E-21 7.3E-26 161.0 14.5 144 5-160 249-402 (422)
23 3asi_A Neurexin-1-alpha; beta- 99.9 5.2E-21 1.8E-25 158.1 16.2 132 7-159 251-383 (410)
24 2erf_A Thrombospondin-1; TSP-1 98.6 9.5E-07 3.2E-11 66.3 13.7 124 5-149 62-194 (209)
25 1za4_A Thrombospondin 1; TSP-1 98.6 3.7E-06 1.3E-10 64.8 16.0 126 5-149 72-204 (251)
26 2v73_A CBM40, putative EXO-alp 98.5 1.1E-05 3.8E-10 59.1 16.1 128 6-148 41-173 (191)
27 3kqr_A Serum amyloid P-compone 98.4 4.1E-05 1.4E-09 57.1 16.5 127 6-149 32-160 (204)
28 3pvn_A C-reactive protein; pen 98.3 3.7E-05 1.3E-09 57.4 15.6 128 6-150 32-163 (206)
29 3flp_A SAP-like pentraxin; phy 98.3 3.1E-05 1.1E-09 58.2 14.5 132 6-149 33-169 (217)
30 2uur_A Collagen alpha-1(IX) ch 98.2 8.9E-05 3.1E-09 56.8 15.8 124 5-149 86-218 (245)
31 4dqa_A Uncharacterized protein 97.7 0.0014 4.8E-08 52.8 14.0 119 6-150 162-290 (355)
32 2sli_A Intramolecular trans-si 97.0 0.036 1.2E-06 48.4 15.5 133 6-149 36-178 (679)
33 2jkb_A Sialidase B; intramolec 96.9 0.059 2E-06 47.1 16.3 134 5-149 57-200 (686)
34 4b1m_A Levanase; hydrolase, CB 96.3 0.026 8.8E-07 41.0 8.6 81 6-94 65-153 (185)
35 1a8d_A Tetanus neurotoxin; clo 96.0 0.52 1.8E-05 38.6 16.1 123 6-149 86-229 (452)
36 2gy5_A Angiopoietin-1 receptor 90.9 0.019 6.5E-07 47.3 -2.1 43 16-63 364-406 (423)
37 4azz_A Levanase; hydrolase; 1. 89.8 0.053 1.8E-06 38.6 0.0 82 7-94 45-132 (172)
38 3v0a_B NTNH; botulinum neuroto 87.4 14 0.00048 33.3 12.8 83 6-96 903-989 (1196)
39 3zr5_A Galactocerebrosidase; h 79.7 29 0.001 30.1 11.8 50 43-95 571-621 (656)
40 1dhk_B Bean lectin-like inhibi 76.5 21 0.00071 26.4 12.4 83 6-92 61-152 (223)
41 3rsj_A BONT/F; clostridium bot 74.1 33 0.0011 27.7 11.4 120 5-149 67-203 (413)
42 1ioa_A Arcelin-5A, ARC5A; lect 72.3 28 0.00095 26.0 11.7 87 6-92 66-175 (240)
43 2nx7_A Nematocyst outer WALL a 68.2 1.5 5E-05 20.5 0.5 14 172-185 9-22 (28)
44 1w0p_A Sialidase; hydrolase, n 67.1 12 0.00041 33.1 6.5 81 7-95 94-177 (781)
45 2nyy_A Botulinum neurotoxin ty 58.9 1.2E+02 0.0039 28.3 12.1 121 6-149 939-1074(1295)
46 3u1x_A Putative glycosyl hydro 55.0 17 0.00058 27.1 4.6 29 66-96 156-184 (236)
47 3vuo_A NTNHA; protection of bo 53.0 1.4E+02 0.0049 27.6 12.6 84 6-96 900-986 (1196)
48 2dng_A Eukaryotic translation 53.0 5.9 0.0002 24.9 1.6 34 114-149 14-47 (103)
49 1avb_A Arcelin-1; lectin-like 52.6 67 0.0023 23.6 11.3 87 6-92 64-173 (226)
50 2j76_E EIF-4B, EIF4B, eukaryot 52.0 7.3 0.00025 24.4 1.9 34 114-149 18-51 (100)
51 4f25_A Polyadenylate-binding p 45.7 5.5 0.00019 25.8 0.5 32 116-148 6-37 (115)
52 3mep_A Uncharacterized protein 44.7 82 0.0028 22.4 10.2 34 9-50 60-96 (198)
53 1wi8_A EIF-4B, eukaryotic tran 43.0 8.4 0.00029 24.2 1.1 33 115-149 15-47 (104)
54 1x4d_A Matrin 3; structural ge 40.1 12 0.00041 23.9 1.5 35 114-149 14-49 (102)
55 1qnw_A Chitin binding lectin, 38.3 78 0.0027 23.6 6.0 85 6-92 68-187 (242)
56 3d2w_A TAR DNA-binding protein 37.4 9.1 0.00031 23.5 0.5 35 114-149 10-44 (89)
57 2cq1_A PTB-like protein L; RRM 36.0 19 0.00065 22.8 1.9 35 114-149 14-48 (101)
58 3o12_A Uncharacterized protein 34.4 1.3E+02 0.0046 21.8 10.7 35 8-50 88-125 (221)
59 2ltn_A PEA lectin, alpha chain 33.8 79 0.0027 22.4 5.1 25 66-90 153-177 (181)
60 1f9k_A Acidic lectin; legume l 32.2 1.5E+02 0.0052 21.8 12.6 85 6-92 68-180 (238)
61 1x4e_A RNA binding motif, sing 31.1 28 0.00096 20.5 2.1 33 115-148 5-37 (85)
62 1wf0_A TDP-43, TAR DNA-binding 30.9 15 0.0005 22.1 0.7 34 115-149 5-38 (88)
63 4fxv_A ELAV-like protein 1; RN 30.3 13 0.00043 23.4 0.3 33 115-148 19-51 (99)
64 3r27_A HnRNP L, heterogeneous 29.9 17 0.00057 23.3 0.8 35 114-149 20-54 (100)
65 1dbn_A MAL, protein (leukoaggl 29.5 1.7E+02 0.0058 21.6 11.3 27 66-92 162-188 (239)
66 1sjq_A Polypyrimidine tract-bi 29.4 12 0.0004 24.2 0.1 35 114-149 15-49 (105)
67 1fx5_A UEA-I, UE-I, anti-H(O) 29.1 1.5E+02 0.005 22.0 6.1 27 66-92 159-187 (242)
68 1epw_A Bontoxilysin B, botulin 28.9 3.6E+02 0.012 25.2 14.8 120 6-149 924-1061(1290)
69 2ad9_A Polypyrimidine tract-bi 28.2 16 0.00054 24.1 0.5 35 114-149 30-64 (119)
70 3zyp_A CIP1; metal binding pro 28.1 1.7E+02 0.0057 21.0 7.0 56 38-96 98-161 (218)
71 2cpy_A RNA-binding protein 12; 27.5 19 0.00065 23.0 0.8 33 115-148 15-48 (114)
72 2d9p_A Polyadenylate-binding p 26.9 36 0.0012 20.9 2.1 35 114-149 14-48 (103)
73 2dnh_A Bruno-like 5, RNA bindi 26.4 24 0.00083 21.9 1.2 35 114-149 14-48 (105)
74 1uaw_A Mouse-musashi-1; RNP-ty 25.1 18 0.00062 20.9 0.4 32 117-149 2-33 (77)
75 3s7r_A Heterogeneous nuclear r 25.1 27 0.00091 20.8 1.2 34 114-148 10-43 (87)
76 2a6v_A EMP46P; beta sandwich, 25.0 1.7E+02 0.0059 21.4 5.8 87 5-93 64-179 (226)
77 2bqp_A Protein (PEA lectin); D 24.9 2.1E+02 0.0071 21.0 13.9 27 66-92 153-179 (234)
78 1x4f_A Matrin 3; structural ge 24.7 33 0.0011 22.2 1.6 35 114-149 24-59 (112)
79 2kvi_A Nuclear polyadenylated 24.6 16 0.00056 22.4 0.1 35 114-149 9-44 (96)
80 2ytc_A PRE-mRNA-splicing facto 24.0 24 0.00081 20.8 0.8 35 114-149 11-45 (85)
81 2e5h_A Zinc finger CCHC-type a 23.8 40 0.0014 20.2 1.9 35 114-149 15-49 (94)
82 3gne_A Val-1; alginate lyase, 23.7 78 0.0027 23.9 3.7 31 66-96 159-198 (252)
83 1wbf_A Protein (agglutinin); l 23.4 2.3E+02 0.0078 21.0 13.0 85 6-92 68-180 (242)
84 2cpj_A Non-POU domain-containi 23.0 32 0.0011 21.1 1.3 36 113-149 13-48 (99)
85 3fdr_A Tudor and KH domain-con 22.9 78 0.0027 19.4 3.1 27 68-94 40-67 (94)
86 1wex_A Hypothetical protein (r 22.6 30 0.001 21.9 1.1 35 114-149 14-48 (104)
87 1s79_A Lupus LA protein; RRM, 22.1 20 0.0007 22.6 0.2 33 115-148 11-43 (103)
88 2khc_A Testis-specific RNP-typ 22.0 42 0.0015 21.2 1.8 34 115-149 40-73 (118)
89 2xnq_A Nuclear polyadenylated 21.3 30 0.001 21.3 0.9 36 113-149 20-56 (97)
90 3ffz_A Botulinum neurotoxin ty 21.0 5.1E+02 0.017 24.1 11.1 83 5-95 913-1012(1252)
91 1n47_A Isolectin B4; cancer an 20.9 2.5E+02 0.0086 20.5 14.4 85 6-92 66-180 (233)
92 2dgu_A Heterogeneous nuclear r 20.8 27 0.00091 21.7 0.5 35 114-149 10-44 (103)
93 2dgs_A DAZ-associated protein 20.7 37 0.0013 20.7 1.2 35 114-149 9-43 (99)
94 2do4_A Squamous cell carcinoma 20.4 38 0.0013 20.7 1.2 34 115-149 17-50 (100)
95 2cq3_A RNA-binding protein 9; 20.4 38 0.0013 20.8 1.2 35 114-149 14-48 (103)
96 2la4_A Nuclear and cytoplasmic 20.2 21 0.00072 22.0 -0.1 34 115-149 27-60 (101)
97 2dgv_A HnRNP M, heterogeneous 20.2 30 0.001 20.7 0.7 34 114-148 7-40 (92)
98 2dnm_A SRP46 splicing factor; 20.1 32 0.0011 21.2 0.8 35 114-149 12-46 (103)
No 1
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A
Probab=99.97 E-value=3.8e-30 Score=192.56 Aligned_cols=158 Identities=16% Similarity=0.255 Sum_probs=118.9
Q ss_pred ceeeeeEEEEEEEcCCCCeEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCceEEEecCCCccCCCceEEEEEEEc
Q psy1323 2 SFRLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINV 81 (186)
Q Consensus 2 ~~r~~~~is~~frT~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~~~~~~~~~~v~Dg~WH~V~i~~~~ 81 (186)
+.+..+.|+|+|||.+++|+|||.+..... .| |++|+|.+|+|++.++.|++...+.+...++||+||+|.+.+..
T Consensus 32 ~~~~~~~isl~frT~~~~GlLl~~~~~~~~--~d--~l~l~L~~G~l~~~~~~G~~~~~l~s~~~v~Dg~WH~V~v~r~~ 107 (191)
T 3v64_A 32 KALQSNHFELSLRTEATQGLVLWIGKAAER--AD--YMALAIVDGHLQLSYDLGSQPVVLRSTVKVNTNRWLRIRAHREH 107 (191)
T ss_dssp EEESEEEEEEEEECSCSSEEEEEESCCSTT--CC--EEEEEEETTEEEEEEESSSCCEEEEEEEECTTSSCEEEEEEEET
T ss_pred ccccceEEEEEEEeCCCCeEEEEeCCCCCC--Cc--EEEEEEECCEEEEEEECCCccEEEecCccccCCCCEEEEEEEeC
Confidence 346778999999999999999999763211 13 99999999999999999988777887789999999999997765
Q ss_pred cccEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccce-ecCCCcEEEEeeEEECCCCcccccccC
Q psy1323 82 HGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVK-YIIESFIGCIKDMVLSAGKAASDLLPI 160 (186)
Q Consensus 82 ~~~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~-~~~~~F~GCi~~v~in~~~~~~~l~~~ 160 (186)
..++|.||+....... .|+.. ..++....|||||+|......... ....+|+|||++|+|| ++++||...
T Consensus 108 --~~~~L~VD~~~~~~~~---~~~~~--~~l~~~~~lylGG~p~~~~~~~~~~~~~~~F~GCi~~l~in--~~~l~l~~~ 178 (191)
T 3v64_A 108 --REGSLQVGNEAPVTGS---SPLGA--TQLDTDGALWLGGLQKLPVGQALPKAYGTGFVGCLRDVVVG--HRQLHLLED 178 (191)
T ss_dssp --TEEEEEETTSCCEEEE---CCTTC--CCEEECSEEEESCCSSCCSSCCSCGGGTSBCEEEEEEEEET--TEECCTTTT
T ss_pred --CEEEEEECCeeeEeEE---CCCCc--ceeccCCceEEcccCcccccccccccccCCceEEeeEEEEC--CEEccchhH
Confidence 4588899988643322 23322 235566799999999864322111 1467899999999995 688888876
Q ss_pred cccccCCccccCccccc
Q psy1323 161 KPLIATKHEHVEEGCID 177 (186)
Q Consensus 161 ~~~~~~~~~~v~~gC~~ 177 (186)
.. ..++..||+.
T Consensus 179 ~~-----~~~~~~gC~~ 190 (191)
T 3v64_A 179 AV-----TKPELRPCPT 190 (191)
T ss_dssp CS-----BCCCCCCCSC
T ss_pred Hh-----cCCCCCCCCC
Confidence 42 2456789963
No 2
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A
Probab=99.97 E-value=7.3e-30 Score=192.81 Aligned_cols=158 Identities=15% Similarity=0.248 Sum_probs=115.4
Q ss_pred ceeeeeEEEEEEEcCCCCeEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCceEEEecCCCccCCCceEEEEEEEc
Q psy1323 2 SFRLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINV 81 (186)
Q Consensus 2 ~~r~~~~is~~frT~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~~~~~~~~~~v~Dg~WH~V~i~~~~ 81 (186)
+.+..+.|+|+|||.+++|+|||.+..... .| |++|+|.+|+|++.++.|++...+.+...+|||+||+|.+.+..
T Consensus 45 ~~~~~~~is~~frT~~~~GlLl~~g~~~~~--~d--fl~l~L~~G~l~~~~~~G~g~~~v~s~~~lnDg~WH~V~v~r~~ 120 (204)
T 1pz7_A 45 KALQSNHFELSIKTEATQGLILWSGKGLER--SD--YIALAIVDGFVQMMYDLGSKPVVLRSTVPINTNHWTHIKAYRVQ 120 (204)
T ss_dssp EEESEEEEEEEEEECCSSEEEEEESCCSTT--CC--EEEEEEETTEEEEEEESSSCCEEEEEEEECCSSSCEEEEEEEET
T ss_pred ccceeEEEEEEEEcCCCCeEEEEeCCCCCC--CC--eEEEEEECCEEEEEEECCCCeEEEECCcccCCCCeEEEEEEEeC
Confidence 345678999999999999999998653211 13 99999999999999999998777778889999999999997765
Q ss_pred cccEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccce-ecCCCcEEEEeeEEECCCCcccccccC
Q psy1323 82 HGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVK-YIIESFIGCIKDMVLSAGKAASDLLPI 160 (186)
Q Consensus 82 ~~~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~-~~~~~F~GCi~~v~in~~~~~~~l~~~ 160 (186)
+ .+.|.||+....... .++.. ..++....+||||+|.......+. ....+|+|||++|+|| ++++||...
T Consensus 121 ~--~~~L~VD~~~~~~~~---~~~~~--~~l~~~~~lylGG~p~~~~~~~~~~~~~~~F~GCi~~l~in--~~~~dl~~~ 191 (204)
T 1pz7_A 121 R--EGSLQVGNEAPITGS---SPLGA--TQLDTDGALWLGGMERLSVAHKLPKAYSTGFIGCIRDVIVD--RQELHLVED 191 (204)
T ss_dssp T--EEEEEETTSCCEEEE---CCSSC--CCEEECCEEEESSCSCCSTTTTSCGGGGSBCEEEEEEEEET--TEECCTTTS
T ss_pred C--EEEEEECCcceEEEE---CCCCC--ceEcCCCCEEEecCCCcccccccccccCCCceEEEEEEEEC--CEEccchhh
Confidence 4 588889987654322 23222 234556799999999864321111 1367899999999996 678888765
Q ss_pred cccccCCccccCccccc
Q psy1323 161 KPLIATKHEHVEEGCID 177 (186)
Q Consensus 161 ~~~~~~~~~~v~~gC~~ 177 (186)
.. . .+...+|+.
T Consensus 192 ~~----~-~~~v~~C~~ 203 (204)
T 1pz7_A 192 AL----N-NPTILHCSA 203 (204)
T ss_dssp CS----S-CCCCCBC--
T ss_pred hh----c-CCCCCCCCC
Confidence 32 2 334577964
No 3
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Probab=99.96 E-value=1.6e-28 Score=184.29 Aligned_cols=146 Identities=23% Similarity=0.360 Sum_probs=108.4
Q ss_pred eeEEEEEEEcCCCCeEEEEeeccCC--CCCCCCceEEEEEeCCEEEEEEEcCCceEEEecCCCccCCCceEEEEEEEccc
Q psy1323 6 CREISFQFRTRLPHGLLVYHSVKDR--PEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINVHG 83 (186)
Q Consensus 6 ~~~is~~frT~~~~GlLl~~~~~~~--~~~~d~~~~~l~l~~G~l~~~~~~g~~~~~~~~~~~v~Dg~WH~V~i~~~~~~ 83 (186)
.+.|+|+|||.+++|+|||.+.... .+..| |++|+|.+|+|++.++.|++...+.+...+|||+||+|.+.+..
T Consensus 31 ~~~is~~frT~~~~GlLl~~~~~~~~~~~~~d--~l~l~L~~G~l~~~~~~G~g~~~~~s~~~l~Dg~WH~V~v~r~~-- 106 (195)
T 3sh4_A 31 PETIELEVRTSTASGLLLWQGVEVGEAGQGKD--FISLGLQDGHLVFRYQLGSGEARLVSEDPINDGEWHRVTALREG-- 106 (195)
T ss_dssp CEEEEEEEEECCSSEEEEEECCCTTCTTSTTC--EEEEEEETTEEEEEEECSSCEEEEEEEEECCSSSCEEEEEEEET--
T ss_pred ceEEEEEEEeCCCCcEEEEecccccCCCCCCc--EEEEEEeCCEEEEEEECCCCcEEEEcCceeCCCCeEEEEEEEeC--
Confidence 4789999999999999999875210 00113 99999999999999999988777888889999999999987765
Q ss_pred cEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEECCC------Cccccc
Q psy1323 84 AKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAG------KAASDL 157 (186)
Q Consensus 84 ~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in~~------~~~~~l 157 (186)
..+.|.||+....... .++.. ..++....|||||+|......... ...+|+|||++|+||+. ++++||
T Consensus 107 ~~~~L~VD~~~~~~~~---~~~~~--~~l~~~~~lyvGG~p~~~~~~~~~-~~~~F~GCi~~l~in~~~~~~~~~~~ldl 180 (195)
T 3sh4_A 107 RRGSIQVDGEELVSGR---SPGPN--VAVNAKGSVYIGGAPDVATLTGGR-FSSGITGCVKNLVLHSARPGAPPPQPLDL 180 (195)
T ss_dssp TEEEEEETTCCCEEEE---CCSSC--CCCCCCSCEEESCCTTHHHHTTTS-CCCCCSEEEEEEEEEECCTTCCCCCCCCT
T ss_pred CEEEEEECCeeeeeee---CCCCc--ccccCCCCEEECCCCCcccccccc-cccCCEEEEEEEEECCcCCCCCCceeecc
Confidence 4588899988654322 23221 235667799999999743221111 36789999999999842 466777
Q ss_pred ccCc
Q psy1323 158 LPIK 161 (186)
Q Consensus 158 ~~~~ 161 (186)
...+
T Consensus 181 ~~~a 184 (195)
T 3sh4_A 181 QHRA 184 (195)
T ss_dssp TTSC
T ss_pred hhhh
Confidence 7643
No 4
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E*
Probab=99.96 E-value=2.9e-28 Score=186.64 Aligned_cols=155 Identities=14% Similarity=0.114 Sum_probs=108.0
Q ss_pred eEEEEEEEcCCCCeEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCceEEEec-CCCccCCCceEEEEEEEccccE
Q psy1323 7 REISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITV-GEGLNRDKWHSVMVRINVHGAK 85 (186)
Q Consensus 7 ~~is~~frT~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~~~~~~~-~~~v~Dg~WH~V~i~~~~~~~~ 85 (186)
..|+|+|||.+++|+|||.+.....+ | |++|+|.+|+|++.++.|++...+.. ...+|||+||+|++.+..+ .
T Consensus 65 ~~isl~FrT~~~~GlLl~~~~~~~~~--d--fi~L~L~~G~l~~~~~~G~~~~~~~~~~~~vnDG~WH~V~v~r~~~--~ 138 (226)
T 2r1d_A 65 DRLAIGFSTVQKEAVLVRVDSSSGLG--D--YLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGG--N 138 (226)
T ss_dssp EEEEEEEECCCSSEEEEEEEECTTCC--C--EEEEEEETTEEEEEEESSSCEEEEECCSSCCCSSSCEEEEEEEETT--E
T ss_pred cEEEEEEEeCCCCEEEEEecCCCCCC--C--EEEEEEECCEEEEEEECCCCcEEEEeCCeEecCCCCEEEEEEEeCC--E
Confidence 47999999999999999976432111 3 99999999999999999998777764 4789999999999977654 5
Q ss_pred EEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEECCCCcccccccCccccc
Q psy1323 86 LIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIA 165 (186)
Q Consensus 86 l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in~~~~~~~l~~~~~~~~ 165 (186)
+.|+||+....... ..++.. ..++....|||||+|. ..+|+|||++|++|+ ...+++.......+
T Consensus 139 ~~L~VD~~~~~~~~--~~~~~~--~~l~~~~~lylGG~p~----------~~~F~GCi~~v~ing-~~vl~la~~~~~~v 203 (226)
T 2r1d_A 139 ATLQVDSWPVIERY--PAGRQL--TIFNSQATIIIGGKEQ----------GQPFQGQLSGLYYNG-LKVLNMAAENDANI 203 (226)
T ss_dssp EEEEETTSCCEEEC--CSSCCC--CCBCSEEEEEESSTTT----------TCCCCEEEEEEEETT-BCHHHHHHTTCTTE
T ss_pred EEEEEcCccceEEe--cCCCcc--eeccCCCeEEEccccC----------CCCCeEEEeeEEECC-EeHHhhhhccCCce
Confidence 88899997643221 112111 2355567899999995 256999999999974 33456654332222
Q ss_pred CCccccCccc--cccCCCC
Q psy1323 166 TKHEHVEEGC--IDKKSPC 182 (186)
Q Consensus 166 ~~~~~v~~gC--~~~C~~~ 182 (186)
....+|..+| ++.+.|.
T Consensus 204 ~~~g~V~~~C~~p~~~~~~ 222 (226)
T 2r1d_A 204 AIVGNVRLVGEVPSSMTTE 222 (226)
T ss_dssp EEEEEEEECCCCC------
T ss_pred EEEEEEEECCCCCCCcCCc
Confidence 2235788899 6666664
No 5
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A*
Probab=99.96 E-value=2.5e-28 Score=179.49 Aligned_cols=136 Identities=17% Similarity=0.312 Sum_probs=103.4
Q ss_pred eeEEEEEEEcCCCCeEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCceEEEecCCCccCCCceEEEEEEEccccE
Q psy1323 6 CREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINVHGAK 85 (186)
Q Consensus 6 ~~~is~~frT~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~~~~~~~~~~v~Dg~WH~V~i~~~~~~~~ 85 (186)
.++|+|+|||.+++|+|||.+..... | |++|+|.+|+|++.++.|++...+.+...+|||+||+|++.+.. ..
T Consensus 27 ~~~is~~FrT~~~~GlLly~~~~~~~---d--f~~l~L~~G~l~~~~~~g~~~~~~~s~~~vnDG~WH~V~v~~~~--~~ 99 (170)
T 1d2s_A 27 KTSSSFEVRTWDPEGVIFYGDTNPKD---D--WFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRWHQVEVKMEG--DS 99 (170)
T ss_dssp CCEEEEEEEESCSSEEEEEEEEETTT---E--EEEEEEETTEEEEEEESSSCEEEEECSCCCCSSSCEEEEEEEET--TE
T ss_pred ceEEEEEEEeCCCCEEEEEecCCCCC---C--EEEEEEeCCEEEEEEECCCceEEEeCCCccCCCCCEEEEEEEeC--CE
Confidence 46899999999999999999875422 3 99999999999999999988777778889999999999997765 45
Q ss_pred EEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEECCCCcccccccC
Q psy1323 86 LIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPI 160 (186)
Q Consensus 86 l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in~~~~~~~l~~~ 160 (186)
+.|.||+...... .... . ++. .++||||+|......... ...+|+|||++|++| +..+++...
T Consensus 100 ~~L~VD~~~~~~~---~~~~---~--l~~-~~lylGG~p~~~~~~~~~-~~~~F~GCi~~l~in--~~~~~l~~~ 162 (170)
T 1d2s_A 100 VLLEVDGEEVLRL---RQVS---G--HPI-MRIALGGLLFPASNLRLP-LVPALDGCLRRDSWL--DKQAEISAS 162 (170)
T ss_dssp EEEEETTEEEEEE---TTCC---C--CCE-EEEEESSCSSCGGGSSSC-CCCCCCEEEEEEEES--CGGGEEEEE
T ss_pred EEEEECCeeeeee---ccCC---C--ccc-ccEEEECcccchhhcccC-CCCCeeeEeEEeEEC--Cccceeeec
Confidence 8889998764321 1111 1 222 689999999764332122 468899999999997 455555443
No 6
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus}
Probab=99.96 E-value=1.9e-27 Score=177.61 Aligned_cols=144 Identities=20% Similarity=0.200 Sum_probs=106.2
Q ss_pred eeeeEEEEEEEcCCCCeEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCceEEEecCCCccCCCceEEEEEEEccc
Q psy1323 4 RLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINVHG 83 (186)
Q Consensus 4 r~~~~is~~frT~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~~~~~~~~~~v~Dg~WH~V~i~~~~~~ 83 (186)
+..+.|+|+|||.+++|+|||.+..... ..| |++|+|.+|++++.++.|++...+.+...++||+||+|.+.+..
T Consensus 33 ~~~~~isl~frT~~~~GlLl~~~~~~~~-~~d--~l~l~L~~G~l~~~~~~G~g~~~l~s~~~l~Dg~WH~V~v~r~~-- 107 (189)
T 3pve_A 33 GEKMALEMVFLARGPSGLLLYNGQKTDG-KGD--FVSLALHNRHLEFRYDLGKGAAIIRSKEPIALGTWVRVFLERNG-- 107 (189)
T ss_dssp ---CEEEEEEEESSSCEEEEEEESCC-C-CSC--EEEEEEETTEEEEEEESSSCEEEEECSSCCCTTSEEEEEEEEET--
T ss_pred cceEEEEEEEEeCCCCEEEEEecCCCCC-CCC--eEEEEEECCEEEEEEecCCCCEEEEcCcccCCCCEEEEEEEEeC--
Confidence 5678999999999999999999863110 013 99999999999999999988878888899999999999997765
Q ss_pred cEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEECCCCccccccc
Q psy1323 84 AKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLP 159 (186)
Q Consensus 84 ~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in~~~~~~~l~~ 159 (186)
..+.|.||+....... .++.. ..++...++||||+|.............+|+|||++|+|| ++++++..
T Consensus 108 ~~~~L~VD~~~~~~~~---~~~~~--~~l~~~~~lyvGG~p~~~~~~~~~~~~~~F~GCi~~v~in--g~~l~~~~ 176 (189)
T 3pve_A 108 RKGALQVGDGPRVLGE---SPVPH--TMLNLKEPLYVGGAPDFSKLARGAAVASGFDGAIQLVSLR--GHQLLTQE 176 (189)
T ss_dssp TEEEEEETTSCCEEEE---CCSSC--CCCCCCSCEEESCCSCGGGSCGGGCCCSBCEEEEEEEEET--TEECCBGG
T ss_pred CEEEEEECCceeEeEE---cCCCc--ceecCCCCEEECCcCchhhcccccccCCCCcEEceEEEEC--CEEccChh
Confidence 4588899988643322 23222 2355667899999997643211111467899999999996 56665433
No 7
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Probab=99.96 E-value=6.9e-28 Score=182.12 Aligned_cols=140 Identities=16% Similarity=0.283 Sum_probs=104.0
Q ss_pred eEEEEEEEcCCCCeEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCceEEEecCCCccCCCceEEEEEEEccccEE
Q psy1323 7 REISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINVHGAKL 86 (186)
Q Consensus 7 ~~is~~frT~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~~~~~~~~~~v~Dg~WH~V~i~~~~~~~~l 86 (186)
+.|+|+|||.+++|+|||++..... | |++|+|.+|+|+++++.|++...+.+...+|||+||+|+|.+..+ .+
T Consensus 40 ~~is~~frT~~~~GlLly~~~~~~~---d--~~~l~L~~G~l~~~~~~g~~~~~~~s~~~vnDG~WH~V~v~r~~~--~~ 112 (205)
T 1f5f_A 40 TSSSFEVRTWDPEGVIFYGDTNPKD---D--WFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRWHQVEVKMEGD--SV 112 (205)
T ss_dssp CEEEEEEEESCSSEEEEEEEEETTT---E--EEEEEEETTEEEEEEESSSCEEEEECSCCCCSSSCEEEEEEEETT--EE
T ss_pred eEEEEEEEeCCCCEEEEEeCCCCCC---C--EEEEEEECCEEEEEEECCCceEEEecCCccCCCCCEEEEEEEeCC--EE
Confidence 6899999999999999999875422 3 999999999999999999887777788899999999999977654 58
Q ss_pred EEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEECCCCccccccc
Q psy1323 87 IARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLP 159 (186)
Q Consensus 87 ~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in~~~~~~~l~~ 159 (186)
+|.||+...........+. ... ......|||||+|......... ...+|+|||++|++| +..+|+..
T Consensus 113 ~L~VD~~~~~~~~~~~~~~--~~~-~~~~~~lyiGG~p~~~~~~~~~-~~~~F~GCi~~l~i~--~~~~~l~~ 179 (205)
T 1f5f_A 113 LLEVDGEEVLRLRQVSGPL--TSK-RHPIMRIALGGLLFPASNLRLP-LVPALDGCLRRDSWL--DKQAEISA 179 (205)
T ss_dssp EEEETTEEEEEECSCCCCC-------CCEEEEEESSCSSCGGGSSSC-CCCCCCEEEEEEECS--CGGGEEEE
T ss_pred EEEECCeeeeeeeccCCCc--ccc-cCCCceEEEeCccCcccccccc-CCCCeeEEeeeeEEC--Ceeccccc
Confidence 8899987644321101111 001 1223689999999754322122 468899999999996 45677754
No 8
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus}
Probab=99.95 E-value=1.1e-26 Score=172.40 Aligned_cols=130 Identities=22% Similarity=0.382 Sum_probs=100.7
Q ss_pred eeeeEEEEEEEcCCCCeEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCceEEEecCCCccCCCceEEEEEEEccc
Q psy1323 4 RLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINVHG 83 (186)
Q Consensus 4 r~~~~is~~frT~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~~~~~~~~~~v~Dg~WH~V~i~~~~~~ 83 (186)
+..+.|+|+|||.+++|+|||.+..... | |++|+|.+|+|++.++.|++...+.++..+|||+||+|++.+..
T Consensus 26 ~~~~~isl~FrT~~~~GlLl~~~~~~~~---d--~l~L~L~~G~l~~~~~~G~~~~~~~~~~~lnDg~WH~V~v~r~~-- 98 (182)
T 2r16_A 26 TEAEDVSLRFRSQRAYGILMATTSRDSA---D--TLRLELDAGRVKLTVNLGKGPETLFAGYNLNDNEWHTVRVVRRG-- 98 (182)
T ss_dssp ESEEEEEEEEECSCSSEEEEEEECSSSC---C--EEEEEEETTEEEEEEESSSCCEEEEECSSCCSSSCEEEEEEEET--
T ss_pred ccceEEEEEEEECCCCEEEEEeCCCCCC---C--EEEEEEECCEEEEEEECCCCceEEEcCcccCCCCeEEEEEEEEC--
Confidence 4457899999999999999999864322 3 99999999999999999988777888899999999999997765
Q ss_pred cEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 84 AKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 84 ~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
..++|.||+...... ..++.... ++.. .+|+||+|....... ...+|+|||++|++|
T Consensus 99 ~~~~L~VD~~~~~~~---~~~g~~~~--l~~~-~l~iGG~~~~~~~~~---~~~~F~GCi~~l~in 155 (182)
T 2r16_A 99 KSLKLTVDDQQAMTG---QMAGDHTR--LEFH-NIETGIITERRYLSS---VPSNFIGHLQSLTFN 155 (182)
T ss_dssp TEEEEEETTCCEEEE---ECCSSCCC--EEEE-EEEESSCCCCTTCSS---CCCCCEEEEEEEEET
T ss_pred CEEEEEECCceeEeE---ECCCCccE--Eecc-CeEECCcccccccCC---CCCCCEEEEeEEEEC
Confidence 458889998865332 22332222 3333 699999987543222 356899999999997
No 9
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Probab=99.95 E-value=5.9e-27 Score=174.09 Aligned_cols=140 Identities=21% Similarity=0.387 Sum_probs=103.2
Q ss_pred eeeEEEEEEEcCCCCeEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCceEE-E--ecCCCccCCCceEEEEEEEc
Q psy1323 5 LCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTS-I--TVGEGLNRDKWHSVMVRINV 81 (186)
Q Consensus 5 ~~~~is~~frT~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~~~~-~--~~~~~v~Dg~WH~V~i~~~~ 81 (186)
..++|+|+|||.+++|+|||.++.. | |++|+|.+|++++.++.|++... + .+...+|||+||+|++.+..
T Consensus 28 ~~~~isl~frT~~~~GlLl~~g~~~-----d--~l~l~L~~G~l~~~~~~G~g~~~~~~~~~~~~l~Dg~WH~V~v~r~~ 100 (184)
T 2h0b_A 28 SSDEITLSFKTLQRNGLMLHTGKSA-----D--YVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNL 100 (184)
T ss_dssp SEEEEEEEEEESCSCEEEEEECCTT-----E--EEEEEEETTEEEEEEEESSCEEEEEECCSSSCSSSSSCEEEEEEEET
T ss_pred CccEEEEEEEeCCCCEEEEEeCCCC-----C--EEEEEEECCEEEEEEECCCCeEEEEEecCCcccCCCCeEEEEEEEeC
Confidence 4678999999999999999985422 3 99999999999999999987643 2 35679999999999997765
Q ss_pred cccEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEECCCCccccccc
Q psy1323 82 HGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLP 159 (186)
Q Consensus 82 ~~~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in~~~~~~~l~~ 159 (186)
..+.|.||+...... ..++.. ..++....+||||+|.....+... ...+|+|||++|+||+...++|+..
T Consensus 101 --~~~~L~VD~~~~~~~---~~~~~~--~~l~~~~~l~lGG~p~~~~~~~~~-~~~~F~GCi~~v~in~~~~~l~l~~ 170 (184)
T 2h0b_A 101 --RQVTISVDGILTTTG---YTQEDY--TMLGSDDFFYVGGSPSTADLPGSP-VSNNFMGCLKEVVYKNNDVRLELSR 170 (184)
T ss_dssp --TEEEEEETTTEEEEE---ECSTTC--CCEEECSEEEESCCTTGGGSTTCS-CCCBCEEEEEEEEEEESSCEECHHH
T ss_pred --CEEEEEEcCceeeee---ECCCCc--eeccCCCCEEECCCCccccCcCCc-ccCCCEEEeeEEEECCEEcchhHHH
Confidence 458889998764322 123221 123445689999999864333222 4678999999999985444455544
No 10
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Probab=99.95 E-value=9.4e-27 Score=172.25 Aligned_cols=134 Identities=16% Similarity=0.195 Sum_probs=100.5
Q ss_pred eeEEEEEEEcCCCCeEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCceEEEe-cCCCccCCCceEEEEEEEcccc
Q psy1323 6 CREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSIT-VGEGLNRDKWHSVMVRINVHGA 84 (186)
Q Consensus 6 ~~~is~~frT~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~~~~~~-~~~~v~Dg~WH~V~i~~~~~~~ 84 (186)
.+.|+|+|||.+++|+|||.......+ | |++|+|.+|+|++.++.|++...+. +...+|||+||+|++.+...
T Consensus 30 ~~~isl~FrT~~~~GlLl~~~~~~~~~--d--fi~l~L~~G~l~~~~~~G~~~~~~~~~~~~vnDg~WH~V~v~r~~~-- 103 (178)
T 3bod_A 30 ADRLAIGFSTVQKEAVLVRVDSSSGLG--D--YLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGG-- 103 (178)
T ss_dssp EEEEEEEEECCCSSEEEEEEEESSSSC--C--EEEEEEETTEEEEEEESSSCCEEEECCSSCCCSSSCEEEEEEEETT--
T ss_pred ccEEEEEEEECCCCEEEEEEcCCCCCC--C--EEEEEEECCEEEEEEECCCCceEEecCCcCccCCCeEEEEEEEeCC--
Confidence 568999999999999999975321111 3 9999999999999999998876665 56789999999999877654
Q ss_pred EEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEECCCCcc-cccccCc
Q psy1323 85 KLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAA-SDLLPIK 161 (186)
Q Consensus 85 ~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in~~~~~-~~l~~~~ 161 (186)
.+.|+||+....... .++... ..++....+||||+|. ..+|+|||++|++| +.+ +|+....
T Consensus 104 ~~~L~VD~~~~~~~~---~~~~~~-~~l~~~~~lylGG~p~----------~~~F~GCi~~v~in--~~~vl~l~~~~ 165 (178)
T 3bod_A 104 NATLQVDSWPVIERY---PAGRQL-TIFNSQATIIIGGKEQ----------GQPFQGQLSGLYYN--GLKVLNMAAEN 165 (178)
T ss_dssp EEEEEETTSCCEEEC---CCSCCC-CCBCCEEEEEESCCTT----------SCBCCEEEEEEEET--TEEHHHHHHTT
T ss_pred EEEEEEeCCceeeee---cCCCcc-eEEeCCCcEEEecccC----------CCCCEEEEEEEEEC--CEehHhHhhcC
Confidence 588899998654321 121111 2255566899999986 25699999999996 444 6666543
No 11
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=99.95 E-value=1.5e-26 Score=191.39 Aligned_cols=162 Identities=25% Similarity=0.426 Sum_probs=115.6
Q ss_pred eeeeEEEEEEEcCCCCeEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCceEEEe--cCCCccCCCceEEEEEEEc
Q psy1323 4 RLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSIT--VGEGLNRDKWHSVMVRINV 81 (186)
Q Consensus 4 r~~~~is~~frT~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~~~~~~--~~~~v~Dg~WH~V~i~~~~ 81 (186)
+..++|+|+|||.+++|+|||.++.. . | |++|+|.+|+|++.++.|++...+. +...+|||+||+|++.+..
T Consensus 25 ~~~~~is~~frT~~~~GlLly~~~~~-~---d--fi~l~L~~G~l~~~~~~G~g~~~~~~~s~~~vnDg~WH~V~v~r~~ 98 (410)
T 3asi_A 25 YTSMHLFFQFKTTSLDGLILYNSGDG-N---D--FIVVELVKGYLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDT 98 (410)
T ss_dssp SSCEEEEEEEECSCSCEEEEEEEBST-T---C--EEEEEEETTEEEEEEESSSCEEEEECCCSSCSCSSSCEEEEEEECT
T ss_pred CceEEEEEEEEeCCCCeEEEEeCCCC-C---C--EEEEEEECCEEEEEEECCCCcEEEEeccCcEeCCCCeEEEEEEEcC
Confidence 45689999999999999999987532 1 3 9999999999999999999877765 6789999999999987754
Q ss_pred cccEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCcc--ccceecCCCcEEEEeeEEECCCCccccccc
Q psy1323 82 HGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKL--HGVKYIIESFIGCIKDMVLSAGKAASDLLP 159 (186)
Q Consensus 82 ~~~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~--~~~~~~~~~F~GCi~~v~in~~~~~~~l~~ 159 (186)
+ ..+.|.||+..... ..++. ..++....+||||+|..... +.......+|+|||++|.+| ++++|+..
T Consensus 99 ~-~~~~l~VD~~~~~~----~~~~~---~~l~~~~~lyvGG~p~~~~~~~~~~~~~~~~F~GCi~~l~in--g~~~dl~~ 168 (410)
T 3asi_A 99 S-NLHTVKIDTKITTQ----ITAGA---RNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLN--GRLPDLIS 168 (410)
T ss_dssp T-CEEEEEETTEEEEE----ECTTC---CCCCBCSCEEESCCCGGGGGGSCTTCCCSSBCCEEEEEEESS--SCCCCTTT
T ss_pred C-ceEEEEECCEecee----ccCCc---cceecCCceEECccccchhhhhhhhcccccCchhheeheeeC--CcccCchh
Confidence 3 24677899864322 12221 24566679999999975321 11111356899999999996 45677765
Q ss_pred CcccccCCccccCcccc---ccCC--CCCC
Q psy1323 160 IKPLIATKHEHVEEGCI---DKKS--PCNR 184 (186)
Q Consensus 160 ~~~~~~~~~~~v~~gC~---~~C~--~~~~ 184 (186)
.... ...+|..||+ +.|. ||.|
T Consensus 169 ~~~~---~~~~v~~gC~~~~~~C~~~pC~n 195 (410)
T 3asi_A 169 DALF---CNGQIERGCEGPSTTCQEDSCSN 195 (410)
T ss_dssp TCSE---EESSEEESCCCCSSCCCTTSSST
T ss_pred hhhc---cCCccCCCCCCCCCCcccccCCC
Confidence 3211 1246778893 5774 5543
No 12
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A*
Probab=99.94 E-value=2.3e-26 Score=175.49 Aligned_cols=149 Identities=15% Similarity=0.145 Sum_probs=102.7
Q ss_pred eEEEEEEEcCCCCeEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCceEEEec-CCCccCCCceEEEEEEEccccE
Q psy1323 7 REISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITV-GEGLNRDKWHSVMVRINVHGAK 85 (186)
Q Consensus 7 ~~is~~frT~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~~~~~~~-~~~v~Dg~WH~V~i~~~~~~~~ 85 (186)
..|+|+|||.+++|+|||.+..... .| |++|+|.+|+|++.++.|++...+.. ...+|||+||+|++.+..+ .
T Consensus 37 ~~isl~FrT~~~~GlLly~~~~~~~--~d--fi~LeL~~G~l~~~~~~G~~~~~~~~~~~~vnDG~WH~V~v~r~~~--~ 110 (220)
T 2r1b_A 37 DRLAIGFSTVQKEAVLVRVDSSSGL--GD--YLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGG--N 110 (220)
T ss_dssp EEEEEEEECCCSSEEEEEEEESTTC--CC--EEEEEEETTEEEEEEESSSSCEEEECTTCCCCSSSCEEEEEEEETT--E
T ss_pred cEEEEEEEeCCCCEEEEEecCCCCC--CC--eEEEEEECCEEEEEEECCCCceEEEeCceEecCCceEEEEEEEeCC--E
Confidence 4799999999999999996543211 13 99999999999999999998777765 4689999999999977654 5
Q ss_pred EEEEEcCCcceeEEeecCCCCCc--eee---------------------------cCCCCcEEEcccCCCCccccceecC
Q psy1323 86 LIARVDNRTDETIIKGLDPNTNY--GVT---------------------------SDLTSVVLIGGLSPEEKLHGVKYII 136 (186)
Q Consensus 86 l~l~vd~~~~~~~~~~~~~~~~~--~~~---------------------------l~~~~~lyiGG~p~~~~~~~~~~~~ 136 (186)
++|+||+....... .++... .+. ++...++||||+|. .
T Consensus 111 ~~L~VD~~~~~~~~---~~g~~~~~~l~~~~~~ip~~~~~~~~~~~~~~~~~~~~~n~~~~l~lGG~p~----------~ 177 (220)
T 2r1b_A 111 ATLQVDSWPVIERY---PAGNNDNERLAIARQRIPYRLGRVVDEWLLDKGRQLTIFNSQATIIIGGKEQ----------G 177 (220)
T ss_dssp EEEEETTSCCEEEC---C-----------------CHHHHHHHHHHHHHHHGGGSBCCEEEEEESSTTT----------T
T ss_pred EEEEECCcceeeec---cCCCccchheeccccccccccccccccccccccccceEecCCCcEEECCccC----------C
Confidence 88899998643311 111000 010 12256899999981 4
Q ss_pred CCcEEEEeeEEECCCCcccccccCcccccCCccccCccc
Q psy1323 137 ESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGC 175 (186)
Q Consensus 137 ~~F~GCi~~v~in~~~~~~~l~~~~~~~~~~~~~v~~gC 175 (186)
.+|+|||++|++|+ ...+|+.......+....+|..-|
T Consensus 178 ~~F~GCi~~l~ing-~~vl~la~~~~~~v~~~g~v~~~~ 215 (220)
T 2r1b_A 178 QPFQGQLSGLYYNG-LKVLNMAAENDANIAIVGNVRLVG 215 (220)
T ss_dssp CCCCEEEEEEEETT-BCHHHHHHTTCTTEEEEEEEEECC
T ss_pred CCCEEEEeEEEECC-ChHHhHhhcCCCCEEEeeeEEEec
Confidence 67999999999973 234566654322222223555556
No 13
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}
Probab=99.94 E-value=7.2e-26 Score=185.56 Aligned_cols=144 Identities=21% Similarity=0.328 Sum_probs=110.6
Q ss_pred eeeeeEEEEEEEcCCCCeEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCceEEEecCCCccCCCceEEEEEEEcc
Q psy1323 3 FRLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINVH 82 (186)
Q Consensus 3 ~r~~~~is~~frT~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~~~~~~~~~~v~Dg~WH~V~i~~~~~ 82 (186)
++..+.|+|+|||.+++|+|||.++.... | |++|+|.+|+|++.++.|++...+.++..++||+||+|++.+..+
T Consensus 41 ~~~~~~is~~frT~~~~GlLly~~~~~~~---d--~~~l~L~~G~l~~~~~~g~~~~~~~~~~~~~Dg~WH~V~v~r~~~ 115 (383)
T 2jd4_A 41 VRKRLQVQLSIRTFASSGLIYYVAHQNQM---D--YATLQLQEGRLHFMFDLGKGRTKVSHPALLSDGKWHTVKTEYIKR 115 (383)
T ss_dssp CSSEEEEEEEEEECCSCEEEEEEECTTSS---S--EEEEEEETTEEEEEEECSSCEEEEECCCCCTTSSCEEEEEEEETT
T ss_pred cccceEEEEEEEcCCCCeEEEEeCCCCCC---c--EEEEEEECCEEEEEEECCCCeEEEeCcceecCCCcEEEEEEEeCC
Confidence 45678999999999999999999765322 3 999999999999999999988888888999999999999977654
Q ss_pred ccEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEECCCCcccccccC
Q psy1323 83 GAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPI 160 (186)
Q Consensus 83 ~~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in~~~~~~~l~~~ 160 (186)
.+.|.||+....... .++.. ..++....+||||+|.............+|+|||++|++| +.++++...
T Consensus 116 --~~~L~VD~~~~~~~~---~~g~~--~~l~~~~~l~vGG~p~~~~~~~~~~~~~~F~GCi~~l~in--~~~l~l~~~ 184 (383)
T 2jd4_A 116 --KAFMTVDGQESPSVT---VVGKA--TTLDVERKLYLGGLPSHYRARNIGTITHSIPACIGEIMVN--GQQLDKDRP 184 (383)
T ss_dssp --EEEEEETTEECCCEE---CCSSC--CCCCCCSEEEESSCCTTCCCCSSCSCCSBCCEEEEEEEET--TEECCTTSC
T ss_pred --EEEEEEcCcccccee---cCCCc--ceecCCCCeEEeccCcccccccccccCCCceEEeEEEEEC--CEEeccCCc
Confidence 588889987654322 12211 2355667999999997643221112467899999999996 567777653
No 14
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Probab=99.94 E-value=5.4e-26 Score=187.08 Aligned_cols=143 Identities=22% Similarity=0.343 Sum_probs=110.0
Q ss_pred eeeeeEEEEEEEcCCCCeEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCceEEEecCCCccCCCceEEEEEEEcc
Q psy1323 3 FRLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINVH 82 (186)
Q Consensus 3 ~r~~~~is~~frT~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~~~~~~~~~~v~Dg~WH~V~i~~~~~ 82 (186)
++..+.|+|+|||.+++|+|||.++.... | |++|+|.+|+|++.++.|++...+.++..+|||+||+|+|.+..+
T Consensus 55 ~~~~~~is~~frT~~~~GlLly~~~~~~~---d--fi~l~L~~G~l~~~~~~g~g~~~~~~~~~~~Dg~WH~V~v~r~~~ 129 (394)
T 1dyk_A 55 VKNRLTIELEVRTEAESGLLFYMARINHA---D--FATVQLRNGFPYFSYDLGSGDTSTMIPTKINDGQWHKIKIVRVKQ 129 (394)
T ss_dssp GSSEEEEEEEEEECCSCEEEEEEECTTSS---S--EEEEEEETTEEEEEEESSSCEEEEECCSCCCSSSCEEEEEEEETT
T ss_pred cccceEEEEEEEeCCCCeEEEEcCCCCCC---c--eEEEEEECCEEEEEEECCCCceEEEcccccCCCCEEEEEEEEeCC
Confidence 45678999999999999999999764322 3 999999999999999999988888888899999999999977654
Q ss_pred ccEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEECCCCcccccccC
Q psy1323 83 GAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPI 160 (186)
Q Consensus 83 ~~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in~~~~~~~l~~~ 160 (186)
.+.|.||+...... .++.. ..++....+||||+|.............+|+|||++|++| +.++|+...
T Consensus 130 --~~~L~VD~~~~~~~----~~g~~--~~l~~~~~l~vGG~p~~~~~~~~~~~~~~F~GCi~~l~in--~~~~~l~~~ 197 (394)
T 1dyk_A 130 --EGILYVDDASSQTI----SPKKA--DILDVVGILYVGGLPINYTTRRIGPVTYSLDGCVRNLHME--QAPVDLDQP 197 (394)
T ss_dssp --EEEEEETTEEEEEE----CSTTC--CCCCCCSEEEESSCCTTCCCCSSCSCCSBCSEEEEEEEES--SSCCCTTSC
T ss_pred --EEEEEEcCccccee----cCCCC--ceecCCCCEEEcccCCcccccccccCCCCccEeeeEEEEC--CEEecCCCc
Confidence 57888998764321 12222 2355667999999997644321111356899999999996 466777654
No 15
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}
Probab=99.94 E-value=1.1e-25 Score=184.55 Aligned_cols=156 Identities=22% Similarity=0.341 Sum_probs=111.3
Q ss_pred eeeeeEEEEEEEcCCCCeEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCceEEEec----CCCccCCCceEEEEE
Q psy1323 3 FRLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITV----GEGLNRDKWHSVMVR 78 (186)
Q Consensus 3 ~r~~~~is~~frT~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~~~~~~~----~~~v~Dg~WH~V~i~ 78 (186)
.+..+.|+|+|||.+++|+|||.++... | |++|+|.+|+|++.++.|++...+.. ...++||+||+|.+.
T Consensus 218 ~~~~~~isl~frT~~~~GlLl~~~~~~~----d--~l~l~L~~G~l~~~~~~g~g~~~~~~~~~~~~~l~DG~WH~V~l~ 291 (383)
T 2jd4_A 218 VRLDLQITLEFRTTSKNGVLLGISSAKV----D--AIGLEIVDGKVLFHVNNGAGRITATYQPRAARALCDGKWHTLQAH 291 (383)
T ss_dssp CBSCEEEEEEEEESCSCEEEEEEECSSS----C--EEEEEEETTEEEEEEESSSCEEEEEECCSSTTGGGSSSCEEEEEE
T ss_pred cCCceEEEEEEEeCCCCEEEEEecCCCC----c--EEEEEEECCEEEEEEECCCCcEEEEEecCCCccccCCCcEEEEEE
Confidence 3456789999999999999999876431 3 99999999999999999987655442 467999999999987
Q ss_pred EEccccEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEECCCC--cccc
Q psy1323 79 INVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGK--AASD 156 (186)
Q Consensus 79 ~~~~~~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in~~~--~~~~ 156 (186)
+.. ..+.|.||+....... .+. . ...++....+||||+|......... ...+|+|||++|+||+.. +.+|
T Consensus 292 ~~~--~~~~L~VD~~~~~~~~---~~~-~-~~~l~~~~~lylGG~p~~~~~~~~~-~~~~F~GCi~~v~in~~~~~~~~d 363 (383)
T 2jd4_A 292 KSK--HRIVLTVDGNSVRAES---PHT-H-STSADTNDPIYVGGYPAHIKQNSLS-SRASFRGCVRNLRLSRGSQVQSLD 363 (383)
T ss_dssp EET--TEEEEEETTEEEEEC--------C-CCCBCCCEEEEESCCCTTSCCTTCS-CCCBCEEEEEEEEEC---CCEECC
T ss_pred EcC--CEEEEEECCeeccccc---CCC-C-cccccCCCCEEEeccccccccCCcc-ccCCCceEccEEEECCCCcccccC
Confidence 764 4588899987543211 111 0 1235566789999999865433222 467899999999997432 2477
Q ss_pred cccCcccccCCccccCcc-ccc
Q psy1323 157 LLPIKPLIATKHEHVEEG-CID 177 (186)
Q Consensus 157 l~~~~~~~~~~~~~v~~g-C~~ 177 (186)
+.... ...+|..+ ||.
T Consensus 364 l~~~~-----~~~gv~~~~Cp~ 380 (383)
T 2jd4_A 364 LSRAF-----DLQGVFPHSCPG 380 (383)
T ss_dssp GGGCS-----EEEEEETTCEES
T ss_pred hhhHH-----hhcCcccCCCCC
Confidence 75542 23578887 964
No 16
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Probab=99.94 E-value=2.2e-25 Score=183.46 Aligned_cols=157 Identities=20% Similarity=0.286 Sum_probs=114.5
Q ss_pred ceeeeeEEEEEEEcCCCCeEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCceEEEe----cCCCccCCCceEEEE
Q psy1323 2 SFRLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSIT----VGEGLNRDKWHSVMV 77 (186)
Q Consensus 2 ~~r~~~~is~~frT~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~~~~~~----~~~~v~Dg~WH~V~i 77 (186)
+.+..+.|+|+|||.+++|+|||...... + |++|+|.+|+|++.++.|.+...+. ....++||+||+|++
T Consensus 229 ~~~~~~~is~~frT~~~~GlLl~~~~~~~----~--~l~l~L~~G~l~~~~~~g~~~~~~~~~~~~~~~l~DG~WH~V~v 302 (394)
T 1dyk_A 229 KVGLDLLVEFEFRTTRPTGVLLGVSSQKM----D--GMGIEMIDEKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTA 302 (394)
T ss_dssp CCBSEEEEEEEEEESCSCEEEEEEECSSS----C--EEEEEEETTEEEEEEESSSCCEEEEECCCSTTSTTSSSCEEEEE
T ss_pred ccCCceEEEEEEEeCCCCEEEEEecCCCC----C--EEEEEEECCEEEEEEECCCCcEEEEEecCCCccccCCceEEEEE
Confidence 44567899999999999999999864321 3 9999999999999999987754443 267899999999998
Q ss_pred EEEccccEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEECCC---Ccc
Q psy1323 78 RINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAG---KAA 154 (186)
Q Consensus 78 ~~~~~~~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in~~---~~~ 154 (186)
.+.. ..+.|.||+....... .+. ....++....+||||+|......... ...+|+|||++|+||+. .++
T Consensus 303 ~~~~--~~~~L~VD~~~~~~~~---~~~--~~~~l~~~~~lylGG~p~~~~~~~~~-~~~~F~GCi~~v~in~~~~~~~~ 374 (394)
T 1dyk_A 303 KKIK--NRLELVVDGNQVDAQS---PNS--ASTSADTNDPVFVGGFPGGLNQFGLT-TNIRFRGCIRSLKLTKGTGKPLE 374 (394)
T ss_dssp EEET--TEEEEEETTEEEEEEC---CCT--TCCCBCCCBCCEESCCCTTCCCTTCS-CCCCCEEEEEEEEEECTTSCCEE
T ss_pred EEeC--CEEEEEECCccccccc---CCC--cceecccCCCEEEcCCCccccccccc-cCCCCceeeeEEEECCccCcccc
Confidence 7764 4588899987543221 111 11235566789999999865433322 47789999999999852 256
Q ss_pred cccccCcccccCCccccCcc-ccc
Q psy1323 155 SDLLPIKPLIATKHEHVEEG-CID 177 (186)
Q Consensus 155 ~~l~~~~~~~~~~~~~v~~g-C~~ 177 (186)
+|+.... ...+|..+ ||.
T Consensus 375 ~d~~~a~-----~~~gV~~~~Cp~ 393 (394)
T 1dyk_A 375 VNFAKAL-----ELRGVQPVSCPT 393 (394)
T ss_dssp CCGGGCS-----EEEEEESSEEEC
T ss_pred cchhHhh-----hccCcccCCCCC
Confidence 7876543 23578888 964
No 17
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*
Probab=99.93 E-value=1.5e-25 Score=185.93 Aligned_cols=157 Identities=16% Similarity=0.251 Sum_probs=108.9
Q ss_pred eeeeEEEEEEEcCCCCeEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCceEEEecCCCccCCCceEEEEEEEccc
Q psy1323 4 RLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINVHG 83 (186)
Q Consensus 4 r~~~~is~~frT~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~~~~~~~~~~v~Dg~WH~V~i~~~~~~ 83 (186)
+..+.|+|+|||.+++|+|||.+..... | |++|+|.+|+|++.++.|++...+.++..+|||+||+|+|.+..
T Consensus 60 ~~~~~is~~FrT~~~~GlLly~~~~~~~---d--f~~l~L~~G~l~~~~~~g~~~~~~~~~~~~nDg~WH~V~v~r~~-- 132 (422)
T 1h30_A 60 PTRLVAEFDFRTFDPEGILLFAGGHQDS---T--WIVLALRAGRLELQLRYNGVGRVTSSGPVINHGMWQTISVEELA-- 132 (422)
T ss_dssp CCCCEEEEEEEECCSSEEEEEEESCTTS---E--EEEEEEETTEEEEEEEETTEEEEEEEEEECCSSCCEEEEEEECS--
T ss_pred CCceEEEEEEEeCCCCeEEEEECCCCCC---c--EEEEEEECCEEEEEEECCCCcEEEecCceecCCCCEEEEEEEcC--
Confidence 3457899999999999999999875322 3 99999999999999999987766667889999999999987754
Q ss_pred cEEEEEEcCCcceeEEeecCCCCCceeecC---CCCcEEEcccCCCCccccceecCCCcEEEEeeEEECCCCcccccccC
Q psy1323 84 AKLIARVDNRTDETIIKGLDPNTNYGVTSD---LTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPI 160 (186)
Q Consensus 84 ~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~---~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in~~~~~~~l~~~ 160 (186)
..++|.||+...... ..++... .++ ....+||||+|........ ....+|+|||++|+||+ +..+++...
T Consensus 133 ~~~~L~VD~~~~~~~---~~~g~~~--~l~~~~~~~~lyvGG~p~~~~~~~~-~~~~~F~GCi~~v~i~~-~~~~~l~~~ 205 (422)
T 1h30_A 133 RNLVIKVNRDAVMKI---AVAGDLF--QPERGLYHLNLTVGGIPFHEKDLVQ-PINPRLDGCMRSWNWLN-GEDTTIQET 205 (422)
T ss_dssp SEEEEEETTEEEEEE---ECCSCSS--EEETTEEECEEEESSCSSCGGGSSS-CCCCCCCEEEEEEEEC----------C
T ss_pred CEEEEEECCeeeEEe---ecCCccc--ccccccccceEEEecCccccccccc-ccCCCCeEEEEEeEECC-ccccchhhh
Confidence 458889998754322 1333222 233 3569999999986542111 14678999999999963 334454332
Q ss_pred cccccCCccccCccccccCC
Q psy1323 161 KPLIATKHEHVEEGCIDKKS 180 (186)
Q Consensus 161 ~~~~~~~~~~v~~gC~~~C~ 180 (186)
. . .....+|...+.
T Consensus 206 ~-----~-~~~~~~C~~~~~ 219 (422)
T 1h30_A 206 V-----K-VNTRMQCFSVTE 219 (422)
T ss_dssp C-----C-CCGGGSEESSCB
T ss_pred h-----h-cccCCCCCCcCC
Confidence 1 1 234677965554
No 18
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}
Probab=99.93 E-value=1.6e-24 Score=187.10 Aligned_cols=157 Identities=22% Similarity=0.377 Sum_probs=114.5
Q ss_pred eeeEEEEEEEcCCCCeEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCceEEEecCCCccCCCceEEEEEEEcccc
Q psy1323 5 LCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINVHGA 84 (186)
Q Consensus 5 ~~~~is~~frT~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~~~~~~~~~~v~Dg~WH~V~i~~~~~~~ 84 (186)
..+.|+|+|||.+++|+|||.+..... | |++|+|.+|+|++.++.|++...+.+...+|||+||+|++.+..+
T Consensus 225 ~~~~isl~FrT~~~~GlLl~~~~~~~~---d--~l~L~L~~G~l~~~~~~g~~~~~l~s~~~~nDg~WH~V~v~r~~~-- 297 (608)
T 2wjs_A 225 NISTVMFKFRTFSSSALLMYLATRDLK---D--FMSVELSDGHVKVSYDLGSGMTSVVSNQNHNDGKWKAFTLSRIQK-- 297 (608)
T ss_dssp TEEEEEEEEEESCSEEEEEEEECTTSS---S--EEEEEEETTEEEEEEECSSCEEEEEEEEECCSSSCEEEEEEEETT--
T ss_pred cceEEEEEEEeCCCCeEEEEecCCCCC---c--eEEEEEECCEEEEEEECCCCcEEEEcCccccCCceEEEEEEEecc--
Confidence 457899999999999999999764322 3 999999999999999999987777778899999999999977654
Q ss_pred EEEEEEcCCcce--eEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEECCCCcccccccCcc
Q psy1323 85 KLIARVDNRTDE--TIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKP 162 (186)
Q Consensus 85 ~l~l~vd~~~~~--~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in~~~~~~~l~~~~~ 162 (186)
.+.|.||+.... .......++....+++.....+||||+|......... ...+|+|||++|++| ++++|+....
T Consensus 298 ~~~L~VD~~~~~~~~~~~~~~~g~~~~l~~~~~~~lylGG~p~~~~~~~~~-~~~~F~GCi~~v~in--~~~~~l~~~~- 373 (608)
T 2wjs_A 298 QANISIVDIDSNQEENVATSSSGNNFGLDLKADDKIYFGGLPTLRNLRPEV-NVKKYSGCLKDIEIS--RTPYNILSSP- 373 (608)
T ss_dssp EEEEEEEETTTCCEEEEEEECCSSCCCCCCCTTCEEEESCCCCCSCCCTTC-CCCCCEEEEEEEEET--TEEECGGGCS-
T ss_pred eEEEEEeccccccccccccccCCccccccccCCCceEEeccCcccccCccc-ccCCceEEeeeEEEC--CEecCccccc-
Confidence 577889875432 1111122322212222245799999999865422111 367899999999996 5777876542
Q ss_pred cccCCccccCcccc
Q psy1323 163 LIATKHEHVEEGCI 176 (186)
Q Consensus 163 ~~~~~~~~v~~gC~ 176 (186)
...+|..||+
T Consensus 374 ----~~~~v~~gC~ 383 (608)
T 2wjs_A 374 ----DYVGVTKGCS 383 (608)
T ss_dssp ----SCEEEEESCC
T ss_pred ----cccccccCCC
Confidence 2368899994
No 19
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}
Probab=99.92 E-value=3e-24 Score=185.44 Aligned_cols=158 Identities=16% Similarity=0.257 Sum_probs=109.9
Q ss_pred eeeeEEEEEEEcCCCCeEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCceEEEec-CCCccCCCceEEEEEEEcc
Q psy1323 4 RLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITV-GEGLNRDKWHSVMVRINVH 82 (186)
Q Consensus 4 r~~~~is~~frT~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~~~~~~~-~~~v~Dg~WH~V~i~~~~~ 82 (186)
.....|+|+|||.+++|+|||.++.... | |++|+|.+|+|++.+++|++...+.. ...++||+||+|.+.+..+
T Consensus 30 ~~~~~isl~FrT~~~~glLly~~~~~~~---d--fl~l~L~~G~l~~~~~~G~g~~~l~~~~~~~~dg~WH~V~v~r~~~ 104 (608)
T 2wjs_A 30 GSYNNIVVHVKTAVADNLLFYLGSAKFI---D--FLAIEMRKGKVSFLWDVGSGVGRVEYPDLTIDDSYWYRIEASRTGR 104 (608)
T ss_dssp TTEEEEEEEEEESCSCEEEEEEECSSCS---C--EEEEEEETTEEEEEEESSSCEEEEECCSCCCTTSCCEEEEEEEETT
T ss_pred cccceEEEEEecCCCceEEEEeCCCCCC---c--EEEEEEECCEEEEEEECCCCceEEeeCCccccCCceEEEEEEEeCC
Confidence 3457899999999999999999876322 3 99999999999999999998877774 5789999999999977654
Q ss_pred ccEEEEEEcCCccee------EEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEECCCCcccc
Q psy1323 83 GAKLIARVDNRTDET------IIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASD 156 (186)
Q Consensus 83 ~~~l~l~vd~~~~~~------~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in~~~~~~~ 156 (186)
.+.|.||+..... ......++....++++....+||||+|.....+... ...+|+|||+++.+| +.+++
T Consensus 105 --~~~l~Vd~~~~~~~~~~~~~~~~~~~g~~~~L~l~~~~~l~vGG~p~~~~~~~~~-~~~~F~GCi~~l~in--~~~i~ 179 (608)
T 2wjs_A 105 --NGSISVRALDGPKASMVPSTYHSVSPPGYTILDVDANAMLFVGGLTGKIKKADAV-RVITFTGCMGETYFD--NKPIG 179 (608)
T ss_dssp --EEEEEEEESSSTTTTSCCCCEEEECCSSCCSCCCCSSCEEEESSCCTTSCCCTTC-CCCCCCEEECCCEES--SSBC-
T ss_pred --EEEEEEecccCccccccccccccccCCcceeeccCCCCcEEeCCcCccccCCccc-ccCCccEEEEEEEEC--CEEcc
Confidence 4777898765321 011123332222333334689999999864432211 247899999999996 56777
Q ss_pred cccCcccccCCccccCcccc
Q psy1323 157 LLPIKPLIATKHEHVEEGCI 176 (186)
Q Consensus 157 l~~~~~~~~~~~~~v~~gC~ 176 (186)
+.+.. ...++..||.
T Consensus 180 l~~~~-----~~~g~~~gC~ 194 (608)
T 2wjs_A 180 LWNFR-----EKEGDCKGCT 194 (608)
T ss_dssp ---CC-----EEESCCCCC-
T ss_pred ccccc-----cccCCCCCCC
Confidence 76643 1235567783
No 20
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Probab=99.92 E-value=3.3e-24 Score=197.59 Aligned_cols=169 Identities=21% Similarity=0.371 Sum_probs=120.8
Q ss_pred ceeeeeEEEEEEEcCCCCeEEEEeeccCCC---------CCCCCceEEEEEeCCEEEEEEEcCCceEEEe-cCCCccCCC
Q psy1323 2 SFRLCREISFQFRTRLPHGLLVYHSVKDRP---------EGLDPYALYVIVEKGQLKVVHVFGKHSTSIT-VGEGLNRDK 71 (186)
Q Consensus 2 ~~r~~~~is~~frT~~~~GlLl~~~~~~~~---------~~~d~~~~~l~l~~G~l~~~~~~g~~~~~~~-~~~~v~Dg~ 71 (186)
+.+..+.|+|+|||.+++|+|||..+.... ...| |++|+|.+|++++.++.|++...+. +...+|||+
T Consensus 439 ~~~~~~~is~~FrT~~~~GlLly~~~~~~~~~~~~~~~~~~~d--f~~LeL~~G~l~l~~~~G~g~~~l~~s~~~vnDG~ 516 (1245)
T 3qcw_A 439 NAKKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVD--FFAIEMLDGHLYLLLDMGSGTIKIKALQKKVNDGE 516 (1245)
T ss_dssp CCSSEEEEEEEEECCCSCEEEEEEECCCCSSCCSSCTTSCCCC--EEEEEEETTEEEEEEESSSCEEEEESCSSCCCSSC
T ss_pred CccCceEEEEEEEeCCCCeEEEEecCccccccccccccccCCC--EEEEEEeCCeEEEEEECCCCeEEEeecccEecCCC
Confidence 445678999999999999999998754210 1113 9999999999999999999877766 678999999
Q ss_pred ceEEEEEEEccccEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccce------ecCCCcEEEEee
Q psy1323 72 WHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVK------YIIESFIGCIKD 145 (186)
Q Consensus 72 WH~V~i~~~~~~~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~------~~~~~F~GCi~~ 145 (186)
||+|++.+..+ .++|.||+..... ..++. ...++...++||||+|........+ ....+|+|||++
T Consensus 517 WH~V~l~r~~~--~~~L~VD~~~~~~----~~~~~--~~~l~~~~~lylGG~p~~~~~~~~p~~~~~~~~~~gF~GCir~ 588 (1245)
T 3qcw_A 517 WYHVDFQRDGR--SGTISVNTLRTPY----TAPGE--SEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRD 588 (1245)
T ss_dssp CEEEEEEEETT--EEEEEETTEEEEE----ECSSS--CCCCCCCSCEEESSCCSSCTTCCCCTTCHHHHTTCBCCEEEEE
T ss_pred EEEEEEEEecC--EEEEEEccccccc----ccCCC--cceeccCCceEEcccccccccccccccccccccccCceEEEEE
Confidence 99999977654 5888899864322 12221 1345667899999999764321111 135789999999
Q ss_pred EEECCCCcccccccCcccccCCccccCcccc----ccCC--CCCC
Q psy1323 146 MVLSAGKAASDLLPIKPLIATKHEHVEEGCI----DKKS--PCNR 184 (186)
Q Consensus 146 v~in~~~~~~~l~~~~~~~~~~~~~v~~gC~----~~C~--~~~~ 184 (186)
|.|| ++++|+....... ...+|..||. +.|. ||.|
T Consensus 589 l~in--g~~~dl~~~~~~~--~~~gv~~gC~~~~~~~C~~~pC~n 629 (1245)
T 3qcw_A 589 LFID--GQSKDIRQMAEVQ--STAGVKPSCSRETAKPCLSNPCKN 629 (1245)
T ss_dssp EEET--TEEECHHHHTTTT--TCTTEESSCCCCSSCGGGSCCCCT
T ss_pred EEEC--CEEcCchhhhhhh--ccccccccccccCCCCCCccCCCC
Confidence 9995 6788886432211 2357888893 6775 4543
No 21
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Probab=99.91 E-value=1.9e-23 Score=192.52 Aligned_cols=162 Identities=26% Similarity=0.433 Sum_probs=115.3
Q ss_pred eeeeEEEEEEEcCCCCeEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCceEEEe--cCCCccCCCceEEEEEEEc
Q psy1323 4 RLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSIT--VGEGLNRDKWHSVMVRINV 81 (186)
Q Consensus 4 r~~~~is~~frT~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~~~~~~--~~~~v~Dg~WH~V~i~~~~ 81 (186)
+..+.|+|+|||.+++|+|||..+... | |++|+|.+|+|++.++.|++...+. +...+|||+||+|.+.+..
T Consensus 857 ~~~~~is~~frT~~~~GlLly~~~~~~----d--fi~l~L~~G~l~~~~~~G~g~~~~~~~s~~~vnDg~WH~V~~~~~~ 930 (1245)
T 3qcw_A 857 YTSMHLFFQFKTTSLDGLILYNSGDGN----D--FIVVELVKGYLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDT 930 (1245)
T ss_dssp SSCEEEEEEEECSCSCEEEEEEEESTT----C--EEEEEEETTEEEEEEESSSCCEEEECCCSSCSCSSSCEEEEEEECT
T ss_pred cceEEEEEEEEeCCCCEEEEEeCCCCC----C--EEEEEEeCCEEEEEEECCCCcEEEEecCcccccCCCeEEEEEEEeC
Confidence 356789999999999999999876431 3 9999999999999999998876654 7789999999999997754
Q ss_pred cccEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccc--cceecCCCcEEEEeeEEECCCCccccccc
Q psy1323 82 HGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLH--GVKYIIESFIGCIKDMVLSAGKAASDLLP 159 (186)
Q Consensus 82 ~~~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~--~~~~~~~~F~GCi~~v~in~~~~~~~l~~ 159 (186)
. ....|.||+...... ... ...++...+|||||+|...... .......+|+|||++|+|| ++.+++..
T Consensus 931 ~-~~~~L~VD~~~~~~~----~~~---~~~l~~~~~lylGG~p~~~~~~~~~~~~~~~~F~GCi~~l~in--g~~~~l~~ 1000 (1245)
T 3qcw_A 931 S-NLHTVKIDTKITTQI----TAG---ARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLN--GRLPDLIS 1000 (1245)
T ss_dssp T-CEEEEEETTEEEEEE----CCC---CCCCCEEEEEEESCCCGGGGGGCCTTCCCSSBCCEEEEEEEET--TBCCCTTT
T ss_pred C-eeEEEEECCEeeeec----cCC---cceeccCCCeEECcccccchhhhcccccccCCcEEEeeeEEEC--CEEccccc
Confidence 3 345678998653221 111 1235566799999998653211 1111357899999999996 46667655
Q ss_pred CcccccCCccccCcccc---ccCC--CCCC
Q psy1323 160 IKPLIATKHEHVEEGCI---DKKS--PCNR 184 (186)
Q Consensus 160 ~~~~~~~~~~~v~~gC~---~~C~--~~~~ 184 (186)
.+.. ...+|..||+ +.|. ||.|
T Consensus 1001 ~~~~---~~~~v~~gC~~~~~~C~~~pC~n 1027 (1245)
T 3qcw_A 1001 DALF---CNGQIERGCEGPSTTCQEDSCSN 1027 (1245)
T ss_dssp TCSE---EESCEEESSSCCCCCCCTTSSSS
T ss_pred chhc---cccceeeeeecccCceECCcCCC
Confidence 4321 1246888993 5775 5543
No 22
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*
Probab=99.87 E-value=2.1e-21 Score=161.01 Aligned_cols=144 Identities=15% Similarity=0.119 Sum_probs=94.0
Q ss_pred eeeEEEEEEEcCCCCeEEEEeeccCCCCCCCCceEEEEEeCCEE-------EEEEEcCCceEEEecCCCccCCCceEEEE
Q psy1323 5 LCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQL-------KVVHVFGKHSTSITVGEGLNRDKWHSVMV 77 (186)
Q Consensus 5 ~~~~is~~frT~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l-------~~~~~~g~~~~~~~~~~~v~Dg~WH~V~i 77 (186)
..++|+|+|||.+++|+|||.+..... .| |++|+|.+|++ ++.++.+.+. .+.....++||+||+|.+
T Consensus 249 ~~~~is~~fRT~~~~GlLl~~~~~~~~--~d--~l~l~L~~G~le~~~~~~~l~~~~~~g~-~~~~~~~l~DG~WH~V~~ 323 (422)
T 1h30_A 249 WEVEVVAHIRPAADTGVLFALWAPDLR--AV--PLSVALVDYHSTKKLKKQLVVLAVEHTA-LALMEIKVCDGQEHVVTV 323 (422)
T ss_dssp BCEEEEEEEEESSSCEEEEEEEEGGGT--EE--EEEEEEESCC-----CCCEEEEEETTEE-EEEEECCTTSSCCEEEEE
T ss_pred cceEEEEEEecCCCCEEEEEecCCCcC--CC--cEEEEEEcCccccccccceEEEEeCCee-EEEeeecccCCCEeEeEE
Confidence 467899999999999999998643210 13 89999999987 5777777765 344458999999999933
Q ss_pred EEEccccEEEEEEcCCcceeEEeec-CCCCCc--eeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEECCCCcc
Q psy1323 78 RINVHGAKLIARVDNRTDETIIKGL-DPNTNY--GVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAA 154 (186)
Q Consensus 78 ~~~~~~~~l~l~vd~~~~~~~~~~~-~~~~~~--~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in~~~~~ 154 (186)
.+...... |+||........... .++... ...++...++||||+|... ..... ...+|+||| +|+|| +++
T Consensus 324 ~l~~~~~~--L~vD~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~-~~~~~-~~~~F~GCi-~l~in--g~~ 396 (422)
T 1h30_A 324 SLRDGEAT--LEVDGTRGQSEVSAAQLQERLAVLERHLRSPVLTFAGGLPDVP-VTSAP-VTAFYRGCM-TLEVN--RRL 396 (422)
T ss_dssp EEETTEEE--EEETTEECEESSCHHHHHHHHHHHHHHHTSCCEEEESCCCSCC-TTSSS-CCSBCCEEE-EEEET--TEE
T ss_pred EEEEeccE--EEEeCCccceeechhhcccchhhhhhhhccCCceEEcccCCCC-ccccC-ccCCccccE-EEEEC--CEE
Confidence 33434433 678876543211000 000000 0114566799999999743 22221 356799999 69995 678
Q ss_pred cccccC
Q psy1323 155 SDLLPI 160 (186)
Q Consensus 155 ~~l~~~ 160 (186)
+|+...
T Consensus 397 ldl~~a 402 (422)
T 1h30_A 397 LDLDEA 402 (422)
T ss_dssp CCGGGS
T ss_pred ecHHHH
Confidence 888764
No 23
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=99.86 E-value=5.2e-21 Score=158.07 Aligned_cols=132 Identities=16% Similarity=0.216 Sum_probs=98.7
Q ss_pred eEEEEEEEcCCCCeEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCceEEEec-CCCccCCCceEEEEEEEccccE
Q psy1323 7 REISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITV-GEGLNRDKWHSVMVRINVHGAK 85 (186)
Q Consensus 7 ~~is~~frT~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~~~~~~~-~~~v~Dg~WH~V~i~~~~~~~~ 85 (186)
+.|+|.|||.+++|+|||.......+ + |++|+|.+|+|++.++.|.+...+.. ...++||+||+|.+.+.. ..
T Consensus 251 ~~i~l~frT~~~~GlLl~~~~~~~~~--~--~l~l~L~~G~l~~~~~~g~~~~~~~~~~~~l~DG~wH~V~v~r~~--~~ 324 (410)
T 3asi_A 251 DRLAIGFSTVQKEAVLVRVDSSSGLG--D--YLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSG--GN 324 (410)
T ss_dssp EEEEEEEECCCSEEEEEEEEECTTCC--C--EEEEEEETTEEEEEEESSSSCEEEECCSCCCCSSSCEEEEEEEET--TE
T ss_pred eEEEEEEEeCCCCEEEEEEecCCCCC--c--eEEEEEeCCEEEEEEECCCCceEEecCccCcCCCCeEEEEEEEEC--CE
Confidence 57999999999999999987643211 3 99999999999999999987666664 589999999999987764 45
Q ss_pred EEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEECCCCccccccc
Q psy1323 86 LIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLP 159 (186)
Q Consensus 86 l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in~~~~~~~l~~ 159 (186)
+.|.||+....... .++... ..++....+||||+|.. .+|+|||++|.+|+ ..++++..
T Consensus 325 ~~L~VD~~~~~~~~---~~g~~~-~~~~~~~~lylGG~p~~----------~~F~GCi~~v~ing-~~~l~~a~ 383 (410)
T 3asi_A 325 ATLQVDSWPVIERY---PAGRQL-TIFNSQATIIIGGKEQG----------QPFQGQLSGLYYNG-LKVLNMAA 383 (410)
T ss_dssp EEEEETTSCCEEEC---CSSCCC-CCBCCEEEEEESSTTTT----------CCCCEEEEEEEETT-BCHHHHHH
T ss_pred EEEEECCcceeccc---CCCccc-eeeeccceEEECCcccC----------CCCEEEEEEEEECC-HHHHHHHh
Confidence 88899987654321 221111 12344568999998852 57999999999973 34456653
No 24
>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A 1z78_A
Probab=98.64 E-value=9.5e-07 Score=66.28 Aligned_cols=124 Identities=14% Similarity=0.145 Sum_probs=80.2
Q ss_pred eeeEEEEEEEc-CCCCeEEEEeeccCCCCCCCCceEEEEEeC--CEEEEEEEcCCceEEEe-cCCCccCCCceEEEEEEE
Q psy1323 5 LCREISFQFRT-RLPHGLLVYHSVKDRPEGLDPYALYVIVEK--GQLKVVHVFGKHSTSIT-VGEGLNRDKWHSVMVRIN 80 (186)
Q Consensus 5 ~~~~is~~frT-~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~--G~l~~~~~~g~~~~~~~-~~~~v~Dg~WH~V~i~~~ 80 (186)
..|.|...||. ....|.||...+.... ..++.|++.. ..+.+.|...+....+. .+..+.||+||+|.+.+.
T Consensus 62 ~eFsi~~t~r~~~~~~~~LfsI~~~~~~----~~ql~l~l~g~~~~l~~~y~~~g~~~~~~f~~v~l~dg~WH~l~l~V~ 137 (209)
T 2erf_A 62 KGFLLLASLRQMKKTRGTLLALERKDHS----GQVFSVVSNGKAGTLDLSLTVQGKQHVVSVEEALLATGQWKSITLFVQ 137 (209)
T ss_dssp TEEEEEEEEEECTTCEEEEEEEEETTSS----CEEEEEEEETTTTEEEEEEEETTEEEEEEESSCCCCSSSEEEEEEEEE
T ss_pred CCEEEEEEEEcCCCCCceEEEEEcCCCC----EEEEEEEEcCCCCEEEEEEcCCCCEEEEEEeccccCCCcEEEEEEEEE
Confidence 45778888884 5677778766665421 1378888864 36888775544433333 456799999999999887
Q ss_pred ccccEEEEEEcCCcceeEEeecCCCCCceeec--CC---CCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 81 VHGAKLIARVDNRTDETIIKGLDPNTNYGVTS--DL---TSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 81 ~~~~~l~l~vd~~~~~~~~~~~~~~~~~~~~l--~~---~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
.. .++|.+|-......... .+ . ..+ .. ...++||-.... .. |.|=|++++|-
T Consensus 138 ~~--~v~L~vDC~~~~~~~l~-~~---~-~~~~~~~~~~~~~~~iGq~~~~---------~~-F~G~lq~l~i~ 194 (209)
T 2erf_A 138 ED--RAQLYIDCEKMENAELD-VP---I-QSVFTRDLASIARLRIAKGGVN---------DN-FQGVLQNVRFV 194 (209)
T ss_dssp TT--EEEEEETTTEEEEEECS-SC---G-GGTCCTTHHHHEEEEESCCTTT---------CB-CCEEEEEEEEE
T ss_pred CC--EEEEEEcCeEeEeEEcc-CC---c-hhccccccCCceEEEEecCCCC---------CC-CeEEeEEEEEE
Confidence 64 58888997765432221 11 1 111 11 457899954321 33 99999999994
No 25
>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET: SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A 2ouj_A
Probab=98.59 E-value=3.7e-06 Score=64.75 Aligned_cols=126 Identities=14% Similarity=0.135 Sum_probs=79.0
Q ss_pred eeeEEEEEEEc-CCCCeEEEEeeccCCCCCCCCceEEEEEeC--CEEEEEEEcCCceEEEe-cCCCccCCCceEEEEEEE
Q psy1323 5 LCREISFQFRT-RLPHGLLVYHSVKDRPEGLDPYALYVIVEK--GQLKVVHVFGKHSTSIT-VGEGLNRDKWHSVMVRIN 80 (186)
Q Consensus 5 ~~~~is~~frT-~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~--G~l~~~~~~g~~~~~~~-~~~~v~Dg~WH~V~i~~~ 80 (186)
..|.|...||. ....|.||...+.... ..++.|++.. ..|.+.|...++...+. ....+.||+||+|.+.+.
T Consensus 72 ~eFsil~tlr~~~~~~g~LfsI~~~~g~----~~ql~l~~~G~~~~l~~~Y~~~g~~~~~~f~~~~L~Dg~WH~lalsV~ 147 (251)
T 1za4_A 72 KGFLLLASLRQMKKTRGTLLALERKDHS----GQVFSVVSNGKAGTLDLSLTVQGKQHVVSVEEALLATGQWKSITLFVQ 147 (251)
T ss_dssp TEEEEEEEEEECTTCEEEEEEEEETTSS----CEEEEEEEETTTTEEEEEEEETTEEEEEEESSCCCCSSSCEEEEEEEE
T ss_pred CcEEEEEEEEecCCCCeEEEEEEeCCCC----EEEEEEEECCCCcEEEEEEEcCCCeeeEEEecccccCCCEEEEEEEEE
Confidence 45777788885 4566788876665421 1266666543 36778776544433222 456899999999999887
Q ss_pred ccccEEEEEEcCCcceeEEeecCCCCCcee---ecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 81 VHGAKLIARVDNRTDETIIKGLDPNTNYGV---TSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 81 ~~~~~l~l~vd~~~~~~~~~~~~~~~~~~~---~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
.. .++|.||.......... .+. ... .+.....++||-... ... |.|=|++++|=
T Consensus 148 ~~--~VtLyvDC~~~~~~~l~-~~~--~~i~~~~~~~~~~~~iGq~~~---------~~~-F~G~lq~l~i~ 204 (251)
T 1za4_A 148 ED--RAQLYIDCEKMENAELD-VPI--QSVFTRDLASIARLRIAKGGV---------NDN-FQGVLQNVRFV 204 (251)
T ss_dssp TT--EEEEEETTSCCEEEECS-SCG--GGTSCTTGGGTEEEEESCCST---------TCB-CCEEEEEEEEE
T ss_pred CC--EEEEEECCcccceeecc-Ccc--ccccccccCCCcEEEEEecCC---------CCC-CeEEeEEEEEE
Confidence 54 58888998876543321 111 110 111255789995332 134 99999999994
No 26
>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens}
Probab=98.53 E-value=1.1e-05 Score=59.15 Aligned_cols=128 Identities=15% Similarity=0.100 Sum_probs=85.0
Q ss_pred eeEEEEEEEcCCCCe-EEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCc--eEEE-e-cCCCccCCCceEEEEEEE
Q psy1323 6 CREISFQFRTRLPHG-LLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKH--STSI-T-VGEGLNRDKWHSVMVRIN 80 (186)
Q Consensus 6 ~~~is~~frT~~~~G-lLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~--~~~~-~-~~~~v~Dg~WH~V~i~~~ 80 (186)
..+|.++||+..+.. -||..++.... . .|+.|.|.+|.+.+.+.-..+ .... + .+...+ ++||+|.+..+
T Consensus 41 ~gTI~v~fks~~~~~q~LfSIsN~k~~---n-~yf~lyi~~g~lg~e~R~~~~~~~~~~~~~a~v~~~-~~wntvaf~~d 115 (191)
T 2v73_A 41 EGTIVTRFNMNDTSIQSLIGLSDGNKA---N-NYFSLYVSGGKVGYELRRQEGNGDFNVHHSADVTFN-RGINTLALKIE 115 (191)
T ss_dssp SEEEEEEEEECCCSCEEEEEEECTTCS---S-CEEEEEECSSEEEEEEEECTTSSCEEEEEEEECCCC-SSCEEEEEEEE
T ss_pred CcEEEEEEecCCCcceEEEEccCCCCc---c-ceEEEEEeCCEEEEEEecCCCceeeeeecccceecC-CceEEEEEEEc
Confidence 468999999988332 26767665543 2 489999999999997655322 2222 2 333444 59999998887
Q ss_pred ccccEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEE
Q psy1323 81 VHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVL 148 (186)
Q Consensus 81 ~~~~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~i 148 (186)
. ...+.|.+|+........ +...+-..+ ....+.|||++.... ...-+|.|=|+++.|
T Consensus 116 ~-~~~~~ly~NG~~V~t~~~---~~~~fi~~i-~ln~~~IG~~~r~sg-----~~~y~F~G~Id~~~i 173 (191)
T 2v73_A 116 K-GIGAKIFLNGSLVKTVSD---PNIKFLNAI-NLNSGFIGKTDRANG-----YNEYLFRGNIDFMNI 173 (191)
T ss_dssp T-TTEEEEEETTEEEEEEEC---TTCCCGGGS-CCCEEEESSCCCCSS-----SCCCCCCEEEEEEEE
T ss_pred C-CccEEEEECCEEEEEEec---ccccceeec-CCceEEEcceeecCC-----ceeeccCCeEEEEEE
Confidence 6 557889999987654322 111111223 345999999876521 145679999999999
No 27
>3kqr_A Serum amyloid P-component; glycoprotein, disulfide bond, lectin, metal-binding secreted; HET: NAG; 1.50A {Homo sapiens} SCOP: b.29.1.5 PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A* 3d5o_A* 2w08_A*
Probab=98.38 E-value=4.1e-05 Score=57.09 Aligned_cols=127 Identities=15% Similarity=0.097 Sum_probs=80.0
Q ss_pred eeEEEEEEEcCC-CCeEEEEeeccCCCCCCCCceEEEEE-eCCEEEEEEEcCCceEEEecCCCccCCCceEEEEEEEccc
Q psy1323 6 CREISFQFRTRL-PHGLLVYHSVKDRPEGLDPYALYVIV-EKGQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINVHG 83 (186)
Q Consensus 6 ~~~is~~frT~~-~~GlLl~~~~~~~~~~~d~~~~~l~l-~~G~l~~~~~~g~~~~~~~~~~~v~Dg~WH~V~i~~~~~~ 83 (186)
.|++.+.+||.. ..+.||..+.... + .-+.|.. ..|.+.+.+ ++....+. ..+.||+||+|.+..+...
T Consensus 32 ~fTvc~wv~~~~~~~~tlfSy~~~~~----~-nel~l~~~~~~~~~l~i--~g~~~~~~--~~~~~g~W~Hv~~twd~~~ 102 (204)
T 3kqr_A 32 NFTLCFRAYSDLSRAYSLFSYNTQGR----D-NELLVYKERVGEYSLYI--GRHKVTSK--VIEKFPAPVHICVSWESSS 102 (204)
T ss_dssp EEEEEEEEECCCCSCEEEEEEEETTE----E-EEEEEEEEETTEEEEEE--TTEEEEEE--CCCCSSCCEEEEEEEETTT
T ss_pred CEEEEEEEEeCCCCCeEEEEEECCCC----C-ceEEEEEcCCCeEEEEE--CCeEEEEe--cccCCCceEEEEEEEECCC
Confidence 578889999875 4566665554331 1 1233433 457776654 33333333 5789999999999888877
Q ss_pred cEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 84 AKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 84 ~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
..+.|-+|+....... ..+ ...+...+.+.||.-..... ..+. ....|.|-|.+|.|-
T Consensus 103 G~~~lyvdG~~~~~~~--~~~----g~~i~~~g~l~lGq~qd~~g-g~f~-~~~~f~G~i~~v~iW 160 (204)
T 3kqr_A 103 GIAEFWINGTPLVKKG--LRQ----GYFVEAQPKIVLGQEQDSYG-GKFD-RSQSFVGEIGDLYMW 160 (204)
T ss_dssp CEEEEEETTEECCCEE--CCT----TCCBCSSCEEEESSCCSSSS-CCCC-GGGCCCEEEEEEEEE
T ss_pred CeEEEEECCEEeeeec--cCC----CCEECCCcEEEEcccccCCC-CCcC-cccceeEEEeeEEEE
Confidence 7889999997654321 111 12344567889986543211 1121 356799999999996
No 28
>3pvn_A C-reactive protein; pentraxin family, immune system; 1.98A {Homo sapiens} SCOP: b.29.1.5 PDB: 1gnh_A 1lj7_A 3l2y_A 1b09_A 3pvo_A
Probab=98.35 E-value=3.7e-05 Score=57.37 Aligned_cols=128 Identities=12% Similarity=0.058 Sum_probs=80.6
Q ss_pred eeEEEEEEEcCC---CCeEEEEeeccCCCCCCCCceEEEEEe-CCEEEEEEEcCCceEEEecCCCccCCCceEEEEEEEc
Q psy1323 6 CREISFQFRTRL---PHGLLVYHSVKDRPEGLDPYALYVIVE-KGQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINV 81 (186)
Q Consensus 6 ~~~is~~frT~~---~~GlLl~~~~~~~~~~~d~~~~~l~l~-~G~l~~~~~~g~~~~~~~~~~~v~Dg~WH~V~i~~~~ 81 (186)
.|++.+.++|.. .++.||..+.... + .-+.|... +|.+.+.+ ++....+. ..+.||+||+|.+..+.
T Consensus 32 ~fTvc~wv~~~~~~~~~~~lfSy~~~~~----~-n~l~l~~~~~g~~~l~i--~g~~~~~~--~~~~~g~W~Hv~~twd~ 102 (206)
T 3pvn_A 32 AFTVCLHFYTELSSTRGYSIFSYATKRQ----D-NEILIFWSKDIGYSFTV--GGSEILFE--VPEVTVAPVHICTSWES 102 (206)
T ss_dssp EEEEEEEEEESGGGTCCEEEEEEEETTE----E-EEEEEEEETTTEEEEEE--TTEEEEEE--CSSCCSSCEEEEEEEET
T ss_pred CEEEEEEEEecCCCCCcEEEEEEEcCCC----C-CEEEEEEcCCCeEEEEE--CCeEEEEe--ccCCCCceEEEEEEEEC
Confidence 478899999875 4677776555332 1 13445454 57666654 33333333 56899999999999888
Q ss_pred cccEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEECC
Q psy1323 82 HGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSA 150 (186)
Q Consensus 82 ~~~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in~ 150 (186)
....+.|-+|+....... ..+ ...+...+.+.||.-..... ..+. ....|.|-|.+|+|-+
T Consensus 103 ~~G~~~lyvdG~~~~~~~--~~~----g~~i~~~g~l~lGq~qd~~g-g~f~-~~~~f~G~i~~v~iw~ 163 (206)
T 3pvn_A 103 ASGIVEFWVDGKPRVRKS--LKK----GYTVGAEASIILGQEQDSFG-GNFE-GSQSLVGDIGNVNMWD 163 (206)
T ss_dssp TTCEEEEEETTEECCCEE--CCT----TCCBCSSCEEEESSCCSBTT-BCCC-GGGCCCEEEEEEEEES
T ss_pred CCCeEEEEECCEEccccc--ccC----CcEECCCCEEEEccccccCC-CCcC-CccceEEEEeeEEEEC
Confidence 777889999998654321 111 12244567889986432211 1111 3567999999999963
No 29
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A
Probab=98.31 E-value=3.1e-05 Score=58.24 Aligned_cols=132 Identities=14% Similarity=0.155 Sum_probs=78.5
Q ss_pred eeEEEEEEEcC-CCCeEEEEeeccCCCCCCCCceEEEEEe-C--CEEEEEEEcCCc-eEEEecCCCccCCCceEEEEEEE
Q psy1323 6 CREISFQFRTR-LPHGLLVYHSVKDRPEGLDPYALYVIVE-K--GQLKVVHVFGKH-STSITVGEGLNRDKWHSVMVRIN 80 (186)
Q Consensus 6 ~~~is~~frT~-~~~GlLl~~~~~~~~~~~d~~~~~l~l~-~--G~l~~~~~~g~~-~~~~~~~~~v~Dg~WH~V~i~~~ 80 (186)
.|+|.+.+|+. ...+.||..+.... + ..+.|... + |...+.+..++. ...+..+..+.||+||+|.+..+
T Consensus 33 ~fTvc~wv~~~~~~~~~lfSy~~~~~----~-n~l~l~~~~~~~g~~~~~l~i~g~~~~~~~~~~~~~~g~W~Hv~~t~d 107 (217)
T 3flp_A 33 QLTVCQRIKPFHRNTGYIFSCATSNQ----D-NQFITSMYVKSDGTLNLGLQVNASSNKYISCPIEIELGQWYHVCHVWS 107 (217)
T ss_dssp EEEEEEEEEESCSSCEEEEEEEETTE----E-EEEEEEEEECTTSEEEEEEEETTCCCEEEEEEEECCTTSCEEEEEEEE
T ss_pred cEEEEEEEEecCCCCeeEEEEECCCC----C-ceEEEEEeCCCCcceEEEEEECCccceeEEcccccCCCCEEEEEEEEE
Confidence 47888999944 35566665444321 1 13455554 2 333344334332 23344455789999999999988
Q ss_pred ccccEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 81 VHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 81 ~~~~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
.....+.|-||+....... .... ...+...+.+.||.-..... .... ....|.|-|.+|+|-
T Consensus 108 ~~~G~~~lYvdG~~~~~~~-~~~~----g~~i~~~g~l~lG~~~~~~g-g~f~-~~~~f~G~i~~v~iw 169 (217)
T 3flp_A 108 GVDGRMAVYANGSPCGTME-NVGK----GHQISAGGTVVIGQEQDKIG-GGFE-EQESWSGELSDLQVW 169 (217)
T ss_dssp TTTTEEEEEETTEEEEEES-CSST----TCCBCSCBEEEESSCCSBTT-BCCC-GGGCCCEEEEEEEEE
T ss_pred CCCCEEEEEECCEEeccee-cccc----CcEECCCCEEEeCCcccCCC-CccC-CCCceEEEEeeEEEE
Confidence 7767889999987643211 1111 12344567899997443211 1111 356799999999996
No 30
>2uur_A Collagen alpha-1(IX) chain; glycoprotein, hydroxylation, structural protein, NC4, collagen IX, polymorphism, extracellular matrix; 1.8A {Homo sapiens}
Probab=98.24 E-value=8.9e-05 Score=56.81 Aligned_cols=124 Identities=13% Similarity=0.064 Sum_probs=77.5
Q ss_pred eeeEEEEEEE-cCC---CCeEEEEeeccCCCCCCCCceEEEEEeC--CEEEEEEEcCCc-eEEEecCC--CccCCCceEE
Q psy1323 5 LCREISFQFR-TRL---PHGLLVYHSVKDRPEGLDPYALYVIVEK--GQLKVVHVFGKH-STSITVGE--GLNRDKWHSV 75 (186)
Q Consensus 5 ~~~~is~~fr-T~~---~~GlLl~~~~~~~~~~~d~~~~~l~l~~--G~l~~~~~~g~~-~~~~~~~~--~v~Dg~WH~V 75 (186)
..|.|.+.|| ... ....||...+..+. .++.|.+.. ..+.+.+....+ ...+.-.. .+.||+||+|
T Consensus 86 ~eFsil~tlr~~~~~~~~~~~L~sI~d~~~~-----~qlgv~l~g~~~~l~~~y~~~~g~~q~v~F~~~~~L~Dg~WHkl 160 (245)
T 2uur_A 86 EEYSFLTTFRMTGSTLKKNWNIWQIQDSSGK-----EQVGIKINGQTQSVVFSYKGLDGSLQTAAFSNLSSLFDSQWHKI 160 (245)
T ss_dssp SSEEEEEEEECCGGGGGCEEEEEEEECTTSC-----EEEEEEEEGGGTEEEEEEEBTTSCEEEEEECCCGGGCSSSCEEE
T ss_pred CCEEEEEEEEcCCCCCCcceEEEEEECCCCc-----EEEEEEEcCCCCEEEEEecCCCCCeeEEEecCCccccCCCEEEE
Confidence 3567777888 332 23447766665432 278888873 456666644433 33344333 5899999999
Q ss_pred EEEEEccccEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 76 MVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 76 ~i~~~~~~~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
.+.+.+. .++|.+|-........ .+ ...++..+.++||-.... ....|.|=|+++.|-
T Consensus 161 alsV~~~--~VtLyvDC~~~~~~~l--~~----~~~i~~~G~~~lG~~~~~--------~~~~f~g~lQ~l~i~ 218 (245)
T 2uur_A 161 MIGVERS--SATLFVDCNRIESLPI--KP----RGPIDIDGFAVLGKLADN--------PQVSVPFELQWMLIH 218 (245)
T ss_dssp EEEEETT--EEEEEETTEEEEEEEC--CC----BCCCCCSSEEEEEEESSC--------TTCBCCEEEEEEEEE
T ss_pred EEEEECC--EEEEEEecCccccccc--CC----CCccccCCEEEEEEecCC--------CCCceEEEeEEEEEE
Confidence 9988764 5888898776543222 22 123556778888854211 123699999999994
No 31
>4dqa_A Uncharacterized protein; two domains structure, DUF 1735, laminin_G_3 concanavalin A- lectin/glucanases superfamily domain; HET: MSE; 1.50A {Bacteroides ovatus}
Probab=97.67 E-value=0.0014 Score=52.83 Aligned_cols=119 Identities=13% Similarity=0.074 Sum_probs=73.1
Q ss_pred eeEEEEEEEcCCC--CeEEEEeeccCCCCCCCCceEEEEE--------eCCEEEEEEEcCCceEEEecCCCccCCCceEE
Q psy1323 6 CREISFQFRTRLP--HGLLVYHSVKDRPEGLDPYALYVIV--------EKGQLKVVHVFGKHSTSITVGEGLNRDKWHSV 75 (186)
Q Consensus 6 ~~~is~~frT~~~--~GlLl~~~~~~~~~~~d~~~~~l~l--------~~G~l~~~~~~g~~~~~~~~~~~v~Dg~WH~V 75 (186)
.|+++..+|...- ..-|| +... .+.+-+ ..++|++. .+ ..+.+...+.+|+||+|
T Consensus 162 ~~T~eawv~~~~~~~~~ti~--g~e~--------~~~lr~gd~~~g~~~~~~Lq~~--~~---~~~~s~~~l~~g~W~Hv 226 (355)
T 4dqa_A 162 SFTYEALINVDYFLDNNTIM--GTEG--------VMILRIGDAGGGITPKDYLEVA--GG---QNYRVTKPLLTNRWYHV 226 (355)
T ss_dssp SEEEEEEEEESCCCSSEEEE--EETT--------TEEEEEEEGGGTSEEEEEEEEE--ES---SCEECSSCCCSSCEEEE
T ss_pred cEEEEEEEECCcCCCcceEE--eCCC--------eEEEEEecCCCCCCcCCeEEEe--cC---CccccCCcccCCCEEEE
Confidence 5678888887643 34444 2211 233444 34455553 22 23556678999999999
Q ss_pred EEEEEccccEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEECC
Q psy1323 76 MVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSA 150 (186)
Q Consensus 76 ~i~~~~~~~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in~ 150 (186)
.+.++..+..+.|-||+........ +. ....+.....++||+..... . ....|.|.|.+|+|-+
T Consensus 227 A~t~d~~~~~~~lYvNG~~~~~~~~---~~--~~~~~~~~~~l~IG~~~~~~----~--~~~~f~G~IdevrIw~ 290 (355)
T 4dqa_A 227 ALTYDQPTGKTGIYVNGEKWAGSDW---GI--DGFDPNSDMGFYIGRIYGFK----W--GERPFHGKMSEVRVWS 290 (355)
T ss_dssp EEEEETTTTEEEEEETTEEEEEEEC---CC--CCBCTTSTTCEEESCCTTCT----T--CCCCCEEEEEEEEEES
T ss_pred EEEEECCCCEEEEEECCEEEEEEec---CC--CccccCCCceEEECCCCCCC----C--CCcceeEEEEEEEEEC
Confidence 9988865667899999976543221 11 11223234579999854321 0 2467999999999964
No 32
>2sli_A Intramolecular trans-sialidase; hydrolase, neuraminidase; HET: SKD; 1.80A {Macrobdella decora} SCOP: b.29.1.9 b.68.1.1 PDB: 1sll_A 1sli_A* 3sli_A* 4sli_A*
Probab=96.96 E-value=0.036 Score=48.36 Aligned_cols=133 Identities=13% Similarity=0.163 Sum_probs=80.7
Q ss_pred eeEEEEEEEcCCCCeE--EEEeeccCCCCCCCCceEEEEEe-CCEEEEEEEcC--CceEEEecCCCcc---CC--CceEE
Q psy1323 6 CREISFQFRTRLPHGL--LVYHSVKDRPEGLDPYALYVIVE-KGQLKVVHVFG--KHSTSITVGEGLN---RD--KWHSV 75 (186)
Q Consensus 6 ~~~is~~frT~~~~Gl--Ll~~~~~~~~~~~d~~~~~l~l~-~G~l~~~~~~g--~~~~~~~~~~~v~---Dg--~WH~V 75 (186)
.++|+|+||+...++. ||...+.... . ...|+.+.|. +|.+.+.+.-. ........+..+- .| .|++|
T Consensus 36 ~~Ti~~~~~~~~~~~~~~lfs~s~~~~~-~-~~~~~~~~i~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 113 (679)
T 2sli_A 36 QGTIILSYKSTSENGIQSLFSVGNSTAG-N-QDRHFHIYITNSGGIGIELRNTDGVFNYTLDRPASVRALYKGERVFNTV 113 (679)
T ss_dssp SEEEEEEEEECCCCSEEEEEEEECCSTT-C-TTEEEEEEEETTSCEEEEEEECTTTCEEEEEESSCCCSEETTEECCEEE
T ss_pred CeEEEEEEEcCCCCCceEEEEeecCCcc-c-cCcceEEEEcCCCeEEEEEecCCCCeeeecccccccccccCCCceeEEE
Confidence 5789999999865544 5655553310 0 1138999998 57887764433 2233343444444 35 69999
Q ss_pred EEEEEccccEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 76 MVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 76 ~i~~~~~~~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
.+.++..+..+.|.||+........ ... .+-..+.....+.||+.... +. ..-+|.|=|+++.|=
T Consensus 114 a~~~~~~~~~~~lyvnG~~v~~~~~--~~~-~f~~~~~~~~~~~iG~~~~~----g~--~~~~f~G~i~~~~iy 178 (679)
T 2sli_A 114 ALKADAANKQCRLFANGELLATLDK--DAF-KFISDITGVDNVTLGGTKRQ----GK--IAYPFGGTIGDIKVY 178 (679)
T ss_dssp EEEEETTTTEEEEEETTEEEEEEEC--SSC-CCGGGSTTCCEEEESSEEET----TE--EESCCCEEEEEEEEE
T ss_pred EEEEECCCCeEEEEECCEEeEeecc--ccc-ccccccCCCceEEEeeeecC----Cc--eeccccceEeEEEEe
Confidence 9888765678999999987654322 100 01012333458999984221 11 122699999999994
No 33
>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A*
Probab=96.90 E-value=0.059 Score=47.09 Aligned_cols=134 Identities=10% Similarity=0.019 Sum_probs=81.6
Q ss_pred eeeEEEEEEEcCCCCe--EEEEeeccCCCCCCCCceEEEEEe-CCEEEEEEEcCCc--eEEEecCCCcc---CC--CceE
Q psy1323 5 LCREISFQFRTRLPHG--LLVYHSVKDRPEGLDPYALYVIVE-KGQLKVVHVFGKH--STSITVGEGLN---RD--KWHS 74 (186)
Q Consensus 5 ~~~~is~~frT~~~~G--lLl~~~~~~~~~~~d~~~~~l~l~-~G~l~~~~~~g~~--~~~~~~~~~v~---Dg--~WH~ 74 (186)
..++|+|+|++..... -||...+..... ...|+.+.|. +|.+.+.+.-..+ ...+..+..+. .| .|++
T Consensus 57 ~~~T~~~~~~~~~~~~~~~lfs~sn~~~~~--~~~~~~~~i~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (686)
T 2jkb_A 57 ESQTVVMKFKADKPNSLQALFGLSNSKAGF--KNNYFSIFMRDSGEIGVEIRDAQKGINYLFSRPASLWGKHKGQAVENT 134 (686)
T ss_dssp SCEEEEEEEECSSCCSEEEEEEEECCSTTC--TTCEEEEEEETTSCEEEEEEETTTTEEEEEEESSCCCCEETTEECCEE
T ss_pred CceEEEEEEEccCCCCeeEEEEeecCcccc--cCcceEEEEcCCCeEEEEEecCCCCeeeeccccccccccccCCcceeE
Confidence 3578999999876542 456665543100 0128999996 8888886543322 33344444555 46 7999
Q ss_pred EEEEEEccccEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 75 VMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 75 V~i~~~~~~~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
|.+..+..+..+.|.||+........ ... .+-..++....+-||++.... . ..-+|.|=|+++.|=
T Consensus 135 va~~~d~~~~~~~lyvnG~~v~~~~~--~~~-~~~~~~~~~~~~~iG~~~~~g----~--~~~~f~G~id~~~iy 200 (686)
T 2jkb_A 135 LVFVSDSKDKTYTMYVNGIEVFSETV--DTF-LPISNINGIDKATLGAVNREG----K--EHYLAKGSIDEISLF 200 (686)
T ss_dssp EEEEEETTTTEEEEEETTEEEEEEEC--SSC-CCGGGSTTCCEEEESSEEETT----E--EESCCEEEEEEEEEE
T ss_pred EEEEEECCCCeEEEEECCEEEEeecc--ccc-ceeccCCCcceeeecccccCC----c--ccccccceEeEEEEe
Confidence 99888765667999999987654321 100 000123333588899853221 1 122699999999994
No 34
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A
Probab=96.29 E-value=0.026 Score=41.05 Aligned_cols=81 Identities=11% Similarity=0.099 Sum_probs=47.9
Q ss_pred eeEEEEEEEcCCC-----CeEEEEeeccCCCCCCCCceEEEEEeC--CEEEEEEEcCCceEEEe-cCCCccCCCceEEEE
Q psy1323 6 CREISFQFRTRLP-----HGLLVYHSVKDRPEGLDPYALYVIVEK--GQLKVVHVFGKHSTSIT-VGEGLNRDKWHSVMV 77 (186)
Q Consensus 6 ~~~is~~frT~~~-----~GlLl~~~~~~~~~~~d~~~~~l~l~~--G~l~~~~~~g~~~~~~~-~~~~v~Dg~WH~V~i 77 (186)
.|.++++|+.... .||+|.... ... . +..+.+.. +.+.+.-..++....+. .+..+..|+||+++|
T Consensus 65 Df~le~dvk~~~~~~~g~~Gi~fR~~~-d~~---~--gY~~~i~~~~~~~~l~k~~~g~~~~L~~~~~~~~~g~w~~l~I 138 (185)
T 4b1m_A 65 DFTYESDITIKDGNGRGAGALMFRSDK-DAK---N--GYLANVDAKHDLVKFFKFENGAASVIAEYKTPIDVNKKYHLKT 138 (185)
T ss_dssp SEEEEEEEEEEEEEEEEEEEEEEEECT-TSS---S--EEEEEEETTTTEEEEEEEETTEEEEEEEEECCCCSSCCEEEEE
T ss_pred CEEEEEEEEEcCCCCcceEEEEEEEcC-CCC---C--cEEEEEECCCCEEEEEEEeCCcEEEeeeccccCCCCCeEEEEE
Confidence 3556667766442 366666522 211 2 44566664 67766322233333333 335778899999998
Q ss_pred EEEccccEEEEEEcCCc
Q psy1323 78 RINVHGAKLIARVDNRT 94 (186)
Q Consensus 78 ~~~~~~~~l~l~vd~~~ 94 (186)
... +..+++.||+..
T Consensus 139 ~~~--G~~i~~~vnG~~ 153 (185)
T 4b1m_A 139 EAE--GDRFKIYLDDRL 153 (185)
T ss_dssp EEE--TTEEEEEETTEE
T ss_pred EEE--CCEEEEEECCEE
Confidence 765 456888899865
No 35
>1a8d_A Tetanus neurotoxin; clostridial, ganglioside binding region; 1.57A {Clostridium tetani} SCOP: b.29.1.6 b.42.4.2 PDB: 1af9_A 1fv3_A* 1fv2_A* 3hmy_A* 3hn1_A* 1d0h_A* 1dfq_A* 1dll_A* 1yxw_A* 1yyn_A* 1diw_A*
Probab=95.99 E-value=0.52 Score=38.63 Aligned_cols=123 Identities=7% Similarity=0.017 Sum_probs=71.0
Q ss_pred eeEEEEEEEcCCC---------Ce--EEEEee-ccCCCCCCCCceEEEEEeCCEEEEEEEcCCce-E--EEe-cCCCcc-
Q psy1323 6 CREISFQFRTRLP---------HG--LLVYHS-VKDRPEGLDPYALYVIVEKGQLKVVHVFGKHS-T--SIT-VGEGLN- 68 (186)
Q Consensus 6 ~~~is~~frT~~~---------~G--lLl~~~-~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~~-~--~~~-~~~~v~- 68 (186)
.|+|+|.+|+... +| -|+-.- ....+ ... -..+.|.++.+.+.+....+. . ... ....++
T Consensus 86 dFSISFWvK~~k~~~~~i~~~~~~e~TIin~k~~n~~s--~ns-GW~I~l~gn~liw~l~Dsng~~~~i~f~~~~~~Isd 162 (452)
T 1a8d_A 86 NFTVSFWLRVPKVSASHLEQYGTNEYSIISSMKKHSLS--IGS-GWSVSLKGNNLIWTLKDSAGEVRQITFRDLPDKFNA 162 (452)
T ss_dssp CEEEEEEEECCCCCHHHHHHHTTCEEEEEECCEECGGG--CEE-EEEEEEETTEEEEEEECTTSCEEEEEEECCSBTTSC
T ss_pred ceEEEEEEECCCcCcccccccccCcceEEeeecccccc--CCC-CeEEEeCCCeEEEEEEcCCCceeeEEeccccccCcc
Confidence 6899999999775 22 233222 11000 011 235677888888876654332 2 222 244555
Q ss_pred --CCCceEEEEEEEccccEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEc--ccCCCCccccceecCCCcEEEEe
Q psy1323 69 --RDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIG--GLSPEEKLHGVKYIIESFIGCIK 144 (186)
Q Consensus 69 --Dg~WH~V~i~~~~~~~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiG--G~p~~~~~~~~~~~~~~F~GCi~ 144 (186)
+|+||.|.|..++.+.. .+-+|+........ .+ . ..+.....+-|| +.+ .+++.|+|+
T Consensus 163 ~~~nkW~fVtItvDR~g~~-~IYING~Lv~s~~I---t~--l-G~I~ss~~i~~gi~~~~-----------d~~~~~~ID 224 (452)
T 1a8d_A 163 YLANKWVFITITNDRLSSA-NLYINGVLMGSAEI---TG--L-GAIREDNNITLKLDRCN-----------NNNQYVSID 224 (452)
T ss_dssp SSSSSCEEEEEEECTTSEE-EEEETTEEEEEEEC---TT--C-CCCCCCSEEEEEEESCC-----------CTTCEEEEE
T ss_pred ccCCeEEEEEEEECCCCCE-EEEECCEEeeccch---hh--c-cceeecCeEEEEEcccC-----------CCcccceEe
Confidence 69999999988866544 77899876543221 11 1 123334444555 432 345778999
Q ss_pred eEEEC
Q psy1323 145 DMVLS 149 (186)
Q Consensus 145 ~v~in 149 (186)
++.|=
T Consensus 225 ef~Iy 229 (452)
T 1a8d_A 225 KFRIF 229 (452)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 99994
No 36
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=90.94 E-value=0.019 Score=47.28 Aligned_cols=43 Identities=14% Similarity=0.050 Sum_probs=33.5
Q ss_pred CCCCeEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCceEEEec
Q psy1323 16 RLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITV 63 (186)
Q Consensus 16 ~~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~~~~~~~ 63 (186)
.+++|+++|....... | |++|+|.+|++.+.++.|+....+++
T Consensus 364 ~~~~G~cl~~~~~~~~---d--~ial~l~~G~v~~syd~G~~~~~v~t 406 (423)
T 2gy5_A 364 VKPDGTVLHPKDFNHT---D--HFSVAIFTIHRILPPDSGVWVCSVNT 406 (423)
T ss_dssp ECTTSCEECCSEEEEC---S--SCEEEECCEEEECGGGCEEEEEEEEE
T ss_pred ECCCeEEEeCCCcCcc---c--ceeeeEEeeeEEEeecCCCcceEEEe
Confidence 5889999998764432 3 89999999999999888876555543
No 37
>4azz_A Levanase; hydrolase; 1.70A {Bacillus subtilis}
Probab=89.76 E-value=0.053 Score=38.64 Aligned_cols=82 Identities=11% Similarity=0.048 Sum_probs=43.1
Q ss_pred eEEEEEEEcC-----CCCeEEEEeeccCCCCCCCCceEEEEEeCCEEEE-EEEcCCceEEEecCCCccCCCceEEEEEEE
Q psy1323 7 REISFQFRTR-----LPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKV-VHVFGKHSTSITVGEGLNRDKWHSVMVRIN 80 (186)
Q Consensus 7 ~~is~~frT~-----~~~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~-~~~~g~~~~~~~~~~~v~Dg~WH~V~i~~~ 80 (186)
|.+++.++.. ...||+|...... . ..+++.+.-.++.+.+ .+..|...........+..|+||+++|...
T Consensus 45 f~le~~v~~~~~~~~~~~Gi~fR~~~d~-~---~~Y~~~i~~~~~~~~l~~~~~G~~~~l~~~~~~~~~g~w~~l~I~~~ 120 (172)
T 4azz_A 45 FTYESDITIKDGNGRGAGALMFRSDKDA-K---NGYLANVDAKHDLVKFFKFENGAASVIAEYKTPIDVNKKYHLKTEAE 120 (172)
Confidence 4455555543 3446666542221 1 2233444444455665 332332211122344677899999998665
Q ss_pred ccccEEEEEEcCCc
Q psy1323 81 VHGAKLIARVDNRT 94 (186)
Q Consensus 81 ~~~~~l~l~vd~~~ 94 (186)
. ..+.+.||+..
T Consensus 121 G--~~i~~~vnG~~ 132 (172)
T 4azz_A 121 G--DRFKIYLDDRL 132 (172)
Confidence 4 45777888754
No 38
>3v0a_B NTNH; botulinum neurotoxin, toxin, neurotoxin associated protein, progenitor toxin complex, VHH bound interlocked complex; HET: MES; 2.70A {Clostridium botulinum} PDB: 3v0b_B
Probab=87.41 E-value=14 Score=33.25 Aligned_cols=83 Identities=12% Similarity=0.157 Sum_probs=54.0
Q ss_pred eeEEEEEEEcCCCC---eEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEc-CCceEEEecCCCccCCCceEEEEEEEc
Q psy1323 6 CREISFQFRTRLPH---GLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVF-GKHSTSITVGEGLNRDKWHSVMVRINV 81 (186)
Q Consensus 6 ~~~is~~frT~~~~---GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~-g~~~~~~~~~~~v~Dg~WH~V~i~~~~ 81 (186)
.|+|+|..|...-+ --|+-.-... . ++ .+.+.++.+...+.- .+....+.-. .+.+++||.|.|..++
T Consensus 903 nFSISFWVRipk~~~~eyTIIg~~~nN-s-----GW-~ISf~~n~LIWtl~DsnGn~knI~f~-dy~~NkWyfITISvDR 974 (1196)
T 3v0a_B 903 SFSIYFWLRNLGKDTIKSKLIGSKEDN-C-----GW-EIYFQDTGLVFNMIDSNGNEKNIYLS-DVSNNSWHYITISVDR 974 (1196)
T ss_dssp CEEEEEEEEECCCCCSCEEEEEEEETT-E-----EE-EEEEETTEEEEEEECTTCCEEEEEEC-SCCSSSCEEEEEEEET
T ss_pred ceEEEEEEEcCCcCCccceEEEeecCC-C-----Cc-EEEECCCeEEEEEEcCCCcccceEec-cccCCcEEEEEEEEcC
Confidence 58899999975433 2333222211 1 22 467788888886553 3333333322 7889999999999988
Q ss_pred cccEEEEEEcCCcce
Q psy1323 82 HGAKLIARVDNRTDE 96 (186)
Q Consensus 82 ~~~~l~l~vd~~~~~ 96 (186)
.+..|.+-||+....
T Consensus 975 LGnalkIYINGkLv~ 989 (1196)
T 3v0a_B 975 LKEQLLIFIDDNLVA 989 (1196)
T ss_dssp TTTEEEEEETTEEEE
T ss_pred CCceeEEEECCEEee
Confidence 887878889987543
No 39
>3zr5_A Galactocerebrosidase; hydrolase, GALC, glycosyl hydrolase, krabbe disease, TIM BAR lectin domain; HET: NAG; 2.10A {Mus musculus} PDB: 3zr6_A*
Probab=79.68 E-value=29 Score=30.05 Aligned_cols=50 Identities=10% Similarity=0.169 Sum_probs=36.5
Q ss_pred EeCCEEEEEEEcCCceEEEe-cCCCccCCCceEEEEEEEccccEEEEEEcCCcc
Q psy1323 43 VEKGQLKVVHVFGKHSTSIT-VGEGLNRDKWHSVMVRINVHGAKLIARVDNRTD 95 (186)
Q Consensus 43 l~~G~l~~~~~~g~~~~~~~-~~~~v~Dg~WH~V~i~~~~~~~~l~l~vd~~~~ 95 (186)
..+|.+++.-+.+. ..++. ....+..++||++.|+... ..++..+|+...
T Consensus 571 ~~~G~~~l~~~~~~-~~vLa~g~~~~~~~~w~~L~l~~~G--~~i~~~ldG~~v 621 (656)
T 3zr5_A 571 FANGSYRVTADLGG-WITYASGHADVTAKRWYTLTLGIKG--YFAFGMLNGTIL 621 (656)
T ss_dssp ETTTEEEEEEETTC-CSEEEEEECSCCTTCEEEEEEEEET--TEEEEEETTEEE
T ss_pred EcCCEEEEEEecCC-eEEEEEEEecCCCCceEEEEEEEEC--CEEEEEECCEEE
Confidence 55999999766654 33433 3458999999999987764 468888998654
No 40
>1dhk_B Bean lectin-like inhibitor, porcine pancreatic alpha-amylase; CO (hydrolase-inhibitor), complex (hydrolase-inhibitor) comple; HET: NAG; 1.85A {Phaseolus vulgaris} SCOP: b.29.1.1 PDB: 1viw_B*
Probab=76.50 E-value=21 Score=26.44 Aligned_cols=83 Identities=11% Similarity=0.035 Sum_probs=50.2
Q ss_pred eeEEEEEEEcC------CCCeEEEEeeccC-CCCCCCCceEEEEEe--CCEEEEEEEcCCceEEEecCCCccCCCceEEE
Q psy1323 6 CREISFQFRTR------LPHGLLVYHSVKD-RPEGLDPYALYVIVE--KGQLKVVHVFGKHSTSITVGEGLNRDKWHSVM 76 (186)
Q Consensus 6 ~~~is~~frT~------~~~GlLl~~~~~~-~~~~~d~~~~~l~l~--~G~l~~~~~~g~~~~~~~~~~~v~Dg~WH~V~ 76 (186)
.|+.+|.|+-. ..+|+-|+..... .++ . ..+++|+. +.+|-+.++.- ..........+.+|+.++|.
T Consensus 61 SFsT~F~F~I~~~~~~~~gdGlAF~l~p~~~~p~--~-~~vAVEFDT~~nHVGIdvNsi-S~~~~~~~~~l~~g~~~~v~ 136 (223)
T 1dhk_B 61 SFDTNFTMNIRTHRQANSAVGLDFVLVPVQPESK--G-DTVTVEFDTFLSRISIDVNNN-DIKSVPWDVHDYDGQNAEVR 136 (223)
T ss_dssp EEEEEEEEEEECCC---CCSEEEEEEEEC---------CCEEEEEETTTTEEEEEETTE-EEEEEECCGGGTTTSCEEEE
T ss_pred ceEEEEEEEEeCCCCCCCCCceEEEEecCCCCCC--c-cEEEEEecCCCCcccccCCcc-ccccccCCccccCCCEEEEE
Confidence 46667766542 3689988776532 221 2 36888877 45655543321 11111123456689999999
Q ss_pred EEEEccccEEEEEEcC
Q psy1323 77 VRINVHGAKLIARVDN 92 (186)
Q Consensus 77 i~~~~~~~~l~l~vd~ 92 (186)
|..+...+.|.+.+..
T Consensus 137 I~Yd~~~~~L~V~l~~ 152 (223)
T 1dhk_B 137 ITYNSSTKVFSVSLSN 152 (223)
T ss_dssp EEEETTTTEEEEEEEC
T ss_pred EEEeCCCCEEEEEEec
Confidence 9998877788888764
No 41
>3rsj_A BONT/F; clostridium botulinum type F, ganglioside binding site, GD1A; HET: NGA GAL SIA; 2.00A {Clostridium botulinum} PDB: 3fuq_A
Probab=74.13 E-value=33 Score=27.69 Aligned_cols=120 Identities=10% Similarity=0.028 Sum_probs=66.4
Q ss_pred eeeEEEEEEEcCCCCe---------EEEEeeccCCCCCCCCceEEEEEeCCEEEE-EEEcCCceEEEe-c------CCCc
Q psy1323 5 LCREISFQFRTRLPHG---------LLVYHSVKDRPEGLDPYALYVIVEKGQLKV-VHVFGKHSTSIT-V------GEGL 67 (186)
Q Consensus 5 ~~~~is~~frT~~~~G---------lLl~~~~~~~~~~~d~~~~~l~l~~G~l~~-~~~~g~~~~~~~-~------~~~v 67 (186)
..|+++|.+|...-.- ++=-.. .. +.++ .+.|.++.+.. .++..+....+. . ...+
T Consensus 67 ~nfSiSFWvRi~k~~~~~nl~n~ytii~~wp-~N-----NwGW-~i~~~~n~~iWtliD~ng~~~~i~fry~~~~~~~dy 139 (413)
T 3rsj_A 67 QNFSISFWVRIPKYFNKVNLNNEYTIIDCIR-NN-----NSGW-KISLNYNKIIWTLQDTAGNNQKLVFNYTQMISISDY 139 (413)
T ss_dssp CCEEEEEEEECCCCCSGGGTTCCEEEEEEEE-TT-----TEEE-EEEEETTEEEEEEECTTSCEEEEEEECCSBSSSCSS
T ss_pred cceEEEEEEEcCCcccccccccccceeccee-cc-----Cccc-eEEecCCceEEEEEcCCCCeeEEEEeecccCCcccc
Confidence 4689999999754321 111111 11 1122 57888888777 455544433332 1 1122
Q ss_pred cCCCceEEEEEEEccccEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEE
Q psy1323 68 NRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMV 147 (186)
Q Consensus 68 ~Dg~WH~V~i~~~~~~~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~ 147 (186)
- |.|+.|+|..++.+.. .|-|++......... + . ........+.+|..- ...++-|||++|+
T Consensus 140 i-n~W~hVTIT~drlg~~-~IYINGklv~~~~i~---~--L-~~I~~sn~I~fg~~~----------~~~~~n~~Idd~~ 201 (413)
T 3rsj_A 140 I-NKWIFVTITNNRLGNS-RIYINGNLIDEKSIS---N--L-GDIHVSDNILFKIVG----------CNDTRYVGIRYFK 201 (413)
T ss_dssp T-TSEEEEEEEECTTSEE-EEEETTEEEEEEECT---T--C-CCCCCCSEEEEEEES----------CCSSCEEEEEEEE
T ss_pred c-cceEEEEEEecCCCCe-eEEECCEEecceehh---h--c-cccccccceEEeeec----------ccCcceEEEEEEE
Confidence 3 9999999988765543 667888765443221 0 0 112233455565322 1223889999999
Q ss_pred EC
Q psy1323 148 LS 149 (186)
Q Consensus 148 in 149 (186)
|-
T Consensus 202 If 203 (413)
T 3rsj_A 202 VF 203 (413)
T ss_dssp EE
T ss_pred EE
Confidence 96
No 42
>1ioa_A Arcelin-5A, ARC5A; lectin-like proteins, plant defense proteins, lectin; HET: NAG FUC; 2.70A {Phaseolus vulgaris} SCOP: b.29.1.1
Probab=72.35 E-value=28 Score=26.02 Aligned_cols=87 Identities=15% Similarity=0.128 Sum_probs=52.4
Q ss_pred eeEEEEEEEcC------CCCeEEEEeeccC-CCC------C--------CCCceEEEEEe--CCEEEEEEEcCCceEEEe
Q psy1323 6 CREISFQFRTR------LPHGLLVYHSVKD-RPE------G--------LDPYALYVIVE--KGQLKVVHVFGKHSTSIT 62 (186)
Q Consensus 6 ~~~is~~frT~------~~~GlLl~~~~~~-~~~------~--------~d~~~~~l~l~--~G~l~~~~~~g~~~~~~~ 62 (186)
.|+.+|.|+-. ..+|+-|+..... .+. + ...+.+++|+. +.+|-+.++.-.......
T Consensus 66 SFsT~F~F~I~~~~~~~~gdGlAF~l~p~~~~p~~~g~~LGL~n~~~~~~~~~~vAVEFDT~~nHVGIdvNs~~S~~t~~ 145 (240)
T 1ioa_A 66 SFNTNFTFIIRAKNQSISAYGLAFALVPVNSPPQKKQEFLGIFNTNNPEPNARTVAVVFNTFKNRIDFDKNFIKPYVNEN 145 (240)
T ss_dssp EEEEEEEEECCBSCTTSCCEEEEEEEEETTCCCCCCGGGTTTCCCSSCCGGGCCEEEEEETTTTEEEEEESSSSCSEEEE
T ss_pred cEEEEEEEEEeCCCCCCCCCcEEEEEecCCCCCCCCCCcccccccCCCCCcCcEEEEEecCcCCceeeeeCCcccccccc
Confidence 57777888643 3689988765531 110 0 01236778877 566665544322222222
Q ss_pred cCCCccCCCceEEEEEEEccccEEEEEEcC
Q psy1323 63 VGEGLNRDKWHSVMVRINVHGAKLIARVDN 92 (186)
Q Consensus 63 ~~~~v~Dg~WH~V~i~~~~~~~~l~l~vd~ 92 (186)
....+.+|++++|.|..+...+.|.+.+..
T Consensus 146 ~~~~l~~g~~~~v~I~Yd~~~~~L~V~l~~ 175 (240)
T 1ioa_A 146 CDFHKYNGEKTDVQITYDSSNNDLRVFLHF 175 (240)
T ss_dssp CCHHHHCSSCEEEEEEEETTTTEEEEEEEE
T ss_pred CCccccCCCEEEEEEEEeCCCcEEEEEEec
Confidence 333455899999999998877778877753
No 43
>2nx7_A Nematocyst outer WALL antigen; cysteine rich, disulfide bonds, rich in turns, structural protein; NMR {Hydra vulgaris}
Probab=68.21 E-value=1.5 Score=20.51 Aligned_cols=14 Identities=36% Similarity=0.736 Sum_probs=10.5
Q ss_pred CccccccCCCCCCC
Q psy1323 172 EEGCIDKKSPCNRL 185 (186)
Q Consensus 172 ~~gC~~~C~~~~~~ 185 (186)
++||...|.|.-||
T Consensus 9 qpgcssacapacrl 22 (28)
T 2nx7_A 9 QPGCSSACAPACRL 22 (28)
T ss_dssp STTCCGGGTTTCCH
T ss_pred CCCccccccchhhe
Confidence 57888888887654
No 44
>1w0p_A Sialidase; hydrolase, neuraminidase, lectin; HET: SIA; 1.6A {Vibrio cholerae} SCOP: b.29.1.8 b.29.1.8 b.68.1.1 PDB: 1w0o_A* 1kit_A 2w68_A*
Probab=67.11 E-value=12 Score=33.13 Aligned_cols=81 Identities=11% Similarity=0.070 Sum_probs=46.4
Q ss_pred eEEEEEEEcCCCCeEEEEeeccCCCCCCCCceEE-EEEeC-CEEEEEEEcCCceEEEecCCCccCCCceEEEEEEEcc-c
Q psy1323 7 REISFQFRTRLPHGLLVYHSVKDRPEGLDPYALY-VIVEK-GQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINVH-G 83 (186)
Q Consensus 7 ~~is~~frT~~~~GlLl~~~~~~~~~~~d~~~~~-l~l~~-G~l~~~~~~g~~~~~~~~~~~v~Dg~WH~V~i~~~~~-~ 83 (186)
+.++-..|-.+..-+.=|.++... +|+. +++.+ |.+.+.+.-.++...+.++ .+||.||.+.+.+... .
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~g~~~~~~~~~~g~~~~~~g--~~~~~~h~~~~~~~~~~~ 165 (781)
T 1w0p_A 94 WRMTTEMKVLSGGMITNYYANGTQ------RVLPIISLDSSGNLVVEFEGQTGRTVLATG--TAATEYHKFELVFLPGSN 165 (781)
T ss_dssp EEEEEEEEEEEESCBCCEEECSSE------EECEEEEECTTSCEEEEETTCCSCEEEECG--GGGGSCEEEEEEEECSSS
T ss_pred ceEEEEEEEecCCceeeeecCCCc------eEEEEEEEcCCCcEEEEEEccCCCeeeccC--CCCCceeEEEEEeecCCC
Confidence 445556665554445445445442 2444 44443 8877776433344333233 3899999999865543 5
Q ss_pred cEEEEEEcCCcc
Q psy1323 84 AKLIARVDNRTD 95 (186)
Q Consensus 84 ~~l~l~vd~~~~ 95 (186)
..+.+-+|+.-.
T Consensus 166 ~~~~f~~dG~l~ 177 (781)
T 1w0p_A 166 PSASFYFDGKLI 177 (781)
T ss_dssp CEEEEEETTEEE
T ss_pred ceeEEecCCcEE
Confidence 567666776543
No 45
>2nyy_A Botulinum neurotoxin type A; neurotoxin, FAB, protein antibody complex, toxin- system complex; 2.61A {Clostridium botulinum} PDB: 2nz9_A 3bta_A 3v0a_A* 3v0b_A 3v0c_A 3zus_A 3zur_A
Probab=58.94 E-value=1.2e+02 Score=28.30 Aligned_cols=121 Identities=10% Similarity=-0.040 Sum_probs=66.4
Q ss_pred eeEEEEEEEcCCCC--------eEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCc-eEEEe----cCCCcc--CC
Q psy1323 6 CREISFQFRTRLPH--------GLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKH-STSIT----VGEGLN--RD 70 (186)
Q Consensus 6 ~~~is~~frT~~~~--------GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~-~~~~~----~~~~v~--Dg 70 (186)
.|+|+|..|...-+ --|+-.-... . ++ .|.+.++.+...+.-..+ ...+. ....+. -+
T Consensus 939 nFSIsFWvRipk~~~~~~~~neyTIIg~~~nN-s-----GW-~Is~~~n~LIWtl~Dsng~~k~I~f~y~~~~nisdyiN 1011 (1295)
T 2nyy_A 939 NFSTSFWIRIPKYFNSISLNNEYTIINCMENN-S-----GW-KVSLNYGEIIWTLQDTQEIKQRVVFKYSQMINISDYIN 1011 (1295)
T ss_dssp EEEEEEEEECCCCCSGGGGGCCEEEEEEEETT-E-----EE-EEEEETTEEEEEEECSSSCEEEEEEECCSBSSSCSSTT
T ss_pred ceEEEEEEEcCCcccccccCCcceEEEeecCC-C-----Cc-EEEECCCeEEEEEecCCCccceEEEecccccchhhccC
Confidence 58899999974211 1223121111 1 22 467788888886654333 22222 122333 29
Q ss_pred CceEEEEEEEccccEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 71 KWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 71 ~WH~V~i~~~~~~~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
+||.|+|..++.+.. .+-||+...... +.... ..+.....+-+|-+. . ..+++.++|++++|-
T Consensus 1012 kW~fVTITndRlgna-~IYINGkLi~~~--~I~~l----~nI~~sd~Isfk~~g-------~--nD~~~~i~Id~l~If 1074 (1295)
T 2nyy_A 1012 RWIFVTITNNRLNNS-KIYINGRLIDQK--PISNL----GNIHASNNIMFKLDG-------C--RDTHRYIWIKYFNLF 1074 (1295)
T ss_dssp SCEEEEEEEETTSEE-EEEETTEEEEEE--ECTTC----CCCCCCSEEEEEEES-------C--CCTTCEEEEEEEEEE
T ss_pred ceEEEEEEEcCCCce-eEEECCEEeecc--eeccc----CCcccCceEEEEecc-------C--CCCccceeEeeEEEe
Confidence 999999988866544 677888765432 11111 123333345444111 1 245689999999995
No 46
>3u1x_A Putative glycosyl hydrolase; glycosyl hydrolysis, carbohydrate metabolism,, structural GE joint center for structural genomics, JCSG; HET: MSE PGE; 1.70A {Parabacteroides distasonis}
Probab=55.01 E-value=17 Score=27.07 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=21.8
Q ss_pred CccCCCceEEEEEEEccccEEEEEEcCCcce
Q psy1323 66 GLNRDKWHSVMVRINVHGAKLIARVDNRTDE 96 (186)
Q Consensus 66 ~v~Dg~WH~V~i~~~~~~~~l~l~vd~~~~~ 96 (186)
..-.|+|.+.+|... +..+++.+|+....
T Consensus 156 ~~p~geWN~~~I~~~--g~~i~v~lNG~~V~ 184 (236)
T 3u1x_A 156 VNPPGEWNSSMVLYK--DGYVEHWLNGEKLF 184 (236)
T ss_dssp CCCTTSCEEEEEEEE--TTEEEEEETTEEEE
T ss_pred CCCCCceEEEEEEEE--CCEEEEEECCEEEE
Confidence 344799999998765 45688889887654
No 47
>3vuo_A NTNHA; protection of botulinum neurotoxin, botulinum neurotoxin, to; 3.90A {Clostridium botulinum}
Probab=53.02 E-value=1.4e+02 Score=27.60 Aligned_cols=84 Identities=10% Similarity=0.103 Sum_probs=52.3
Q ss_pred eeEEEEEEEcCCC--CeEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCc-eEEEecCCCccCCCceEEEEEEEcc
Q psy1323 6 CREISFQFRTRLP--HGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKH-STSITVGEGLNRDKWHSVMVRINVH 82 (186)
Q Consensus 6 ~~~is~~frT~~~--~GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~-~~~~~~~~~v~Dg~WH~V~i~~~~~ 82 (186)
.|+|+|..|.... +..-+...-.. .+++ .+.|.++.+...+.-..+ ...+.-...+ ..+||-|+|.-++-
T Consensus 900 nFSISFWiRi~k~~~~~~~iI~~~~n-----NSGW-kIsl~~n~IIwtLqD~ngn~k~i~fs~~i-~NkW~FVTITnnRL 972 (1196)
T 3vuo_A 900 NFTICFWLRFTGKDDDKTRLIGNKVN-----NCGW-EIYFEDNGLVFEIIDSNGNQESVYLSNVI-NNNWYYISISVDRL 972 (1196)
T ss_dssp CEEEEEEEEECCCCSSCEEEEEEECS-----SCEE-EEEEETTEEEEEEECTTCCEEEEEECSCT-TSCCEEEEEEEETT
T ss_pred ceeEEEEEEccCCCCCceeEeeeccc-----CCCc-EEEEeCCcEEEEEEecCCceeeEEEeEee-cceEEEEEEEeccc
Confidence 5899999997642 22222222222 2234 688999999986544333 3334433333 38999999988876
Q ss_pred ccEEEEEEcCCcce
Q psy1323 83 GAKLIARVDNRTDE 96 (186)
Q Consensus 83 ~~~l~l~vd~~~~~ 96 (186)
+..+.+-+++.-..
T Consensus 973 ~~s~~IYING~Li~ 986 (1196)
T 3vuo_A 973 KDQLLIFINDKNVA 986 (1196)
T ss_dssp TTEEEEEETTEEEE
T ss_pred CceeEEEECCEEec
Confidence 66677778876543
No 48
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=52.98 E-value=5.9 Score=24.86 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=23.9
Q ss_pred CCCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 114 LTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 114 ~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
....||||++|.......+...-..| | |.++.+-
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~-g-i~~v~i~ 47 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDL-S-IRSVRLV 47 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTS-C-EEEEEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhC-C-ceEEEEe
Confidence 34589999999887654444445567 7 8887773
No 49
>1avb_A Arcelin-1; lectin-like glycoprotein, plant defense, insecticidal activi lectin; HET: NAG; 1.90A {Phaseolus vulgaris} SCOP: b.29.1.1
Probab=52.60 E-value=67 Score=23.64 Aligned_cols=87 Identities=16% Similarity=0.164 Sum_probs=52.7
Q ss_pred eeEEEEEEEc------CCCCeEEEEeecc-CCCC------C--------CCCceEEEEEe--CCEEEEEEEcCCceEEEe
Q psy1323 6 CREISFQFRT------RLPHGLLVYHSVK-DRPE------G--------LDPYALYVIVE--KGQLKVVHVFGKHSTSIT 62 (186)
Q Consensus 6 ~~~is~~frT------~~~~GlLl~~~~~-~~~~------~--------~d~~~~~l~l~--~G~l~~~~~~g~~~~~~~ 62 (186)
.|+.+|.|+- ...+|+-|+.... ..+. + ...+.+++|+. +.+|-+.++.-.......
T Consensus 64 SFsT~F~F~I~~~~~~~~gdGlAF~l~p~~~~p~~~g~~LGl~n~~~~~~~~~~vAVEFDT~~nHVGIdvNs~~S~~t~~ 143 (226)
T 1avb_A 64 SFSTNFTFRINAKNIENSAYGLAFALVPVGSRPKLKGRYLGLFNTTNYDRDAHTVAVVFDTVSNRIEIDVNSIRPIATES 143 (226)
T ss_dssp EEEEEEEEEEEESSTTSCCEEEEEEEEETTCCCCCCGGGTTTCSCSSCCGGGCCEEEEEETTTTEEEEEESSSSCSEEEE
T ss_pred cEEEEEEEEEeCCCCCCCCCcEEEEEecCCCCCCCCCCcccccccCCCCCcccEEEEEecCcCCccceeecCcccCcccc
Confidence 5666666653 2468998776553 1111 0 01136788877 566665554322222222
Q ss_pred cCCCccCCCceEEEEEEEccccEEEEEEcC
Q psy1323 63 VGEGLNRDKWHSVMVRINVHGAKLIARVDN 92 (186)
Q Consensus 63 ~~~~v~Dg~WH~V~i~~~~~~~~l~l~vd~ 92 (186)
....+.+|+.++|.|..+...+.|.+.+..
T Consensus 144 ~~~~l~~g~~~~v~I~Yd~~~~~L~V~l~~ 173 (226)
T 1avb_A 144 CNFGHNNGEKAEVRITYDSPKNDLRVSLLY 173 (226)
T ss_dssp CCSGGGTTCEEEEEEEEEGGGTEEEEEEEE
T ss_pred CCccccCCCeEEEEEEEeCCCcEEEEEEee
Confidence 345666999999999998877788877753
No 50
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=52.00 E-value=7.3 Score=24.36 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=23.2
Q ss_pred CCCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 114 LTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 114 ~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
....||||++|.......+...-..| | +.++.+-
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G-i~~v~i~ 51 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGL-N-ISAVRLP 51 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSS-C-EEEEECS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc-C-CeEEEEE
Confidence 45699999999887655444334445 7 9999884
No 51
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=45.73 E-value=5.5 Score=25.77 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=20.1
Q ss_pred CcEEEcccCCCCccccceecCCCcEEEEeeEEE
Q psy1323 116 SVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVL 148 (186)
Q Consensus 116 ~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~i 148 (186)
+.||||++|.......+...-..| |.|.+++|
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~-G~v~~v~i 37 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAF-GNILSCKV 37 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEE
T ss_pred CEEEECCCCCCCCHHHHHHHHhcc-CCEEEEEE
Confidence 479999999886554333222223 67777766
No 52
>3mep_A Uncharacterized protein ECA2234; all beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Pectobacterium atrosepticum}
Probab=44.72 E-value=82 Score=22.43 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=19.8
Q ss_pred EEEEEEc-CCCCeEEEEeeccCCCCCCCCceE--EEEEeCCEEEE
Q psy1323 9 ISFQFRT-RLPHGLLVYHSVKDRPEGLDPYAL--YVIVEKGQLKV 50 (186)
Q Consensus 9 is~~frT-~~~~GlLl~~~~~~~~~~~d~~~~--~l~l~~G~l~~ 50 (186)
+++.++. .+.-||++|..... ++ .|+..+|...+
T Consensus 60 v~~~~~~~~dqAGL~v~~d~~~--------w~k~gie~~~g~~~l 96 (198)
T 3mep_A 60 VKADFSALYDQAGIFIGGTETA--------WIKAGIEFNDGQPSI 96 (198)
T ss_dssp EEECCCSTTCEEEEEEEEETTE--------EEEEEEEECSSSEEE
T ss_pred EEcCCCccccceeEEEEECCCC--------EEEEEEEEeCCeEEE
Confidence 3343433 34678888875432 55 56666776554
No 53
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.05 E-value=8.4 Score=24.17 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=23.3
Q ss_pred CCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 115 TSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 115 ~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
...||||++|.......+...-..| | |.++.|-
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~-G-i~~v~i~ 47 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTEESIKEFFRGL-N-ISAVRLP 47 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTTTS-C-EEEEECC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHC-C-ceEEEEe
Confidence 4589999999887654444334456 7 8888884
No 54
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=40.08 E-value=12 Score=23.90 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=23.9
Q ss_pred CCCcEEEcccCC-CCccccceecCCCcEEEEeeEEEC
Q psy1323 114 LTSVVLIGGLSP-EEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 114 ~~~~lyiGG~p~-~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
....||||++|. ......+...-..| |-|.++.|-
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~f-G~V~~v~i~ 49 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPF-GVISNHLIL 49 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGG-SCEEEEEEC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhc-CCEEEEEEE
Confidence 456899999999 76544443333445 778888874
No 55
>1qnw_A Chitin binding lectin, UEA-II; carbohydrate binding; HET: NAG; 2.35A {Ulex europaeus} SCOP: b.29.1.1 PDB: 1dzq_A* 1qoo_A* 1qos_A* 1qot_A*
Probab=38.34 E-value=78 Score=23.57 Aligned_cols=85 Identities=14% Similarity=0.127 Sum_probs=49.6
Q ss_pred eeEEEEEEEcC-----CCCeEEEEeeccCC--CC-------C--------CCCceEEEEEeC-------------CEEEE
Q psy1323 6 CREISFQFRTR-----LPHGLLVYHSVKDR--PE-------G--------LDPYALYVIVEK-------------GQLKV 50 (186)
Q Consensus 6 ~~~is~~frT~-----~~~GlLl~~~~~~~--~~-------~--------~d~~~~~l~l~~-------------G~l~~ 50 (186)
.|..+|.|+-. ..+|+-|+...... +. + ...+.+++|+.- .+|-+
T Consensus 68 sFsT~F~F~I~~~~~~~gdGlAF~l~p~~~~~p~~~~g~~LGl~n~~~~~~~~~~vAVEFDT~~~~~~N~~Dp~~nHVGI 147 (242)
T 1qnw_A 68 SFATSFSFVVKADKSDGVDGLAFFLAPANSQIPSGSSAGMFGLFSSSDSKSSNQIIAVEFDTYFGKAYNPWDPDFKHIGI 147 (242)
T ss_dssp EEEEEEEEECCBSSSCCCCEEEEEEEETTCCCCTTCCGGGTTTCSSSSCCTTSCCEEEEEECCCCTTTCTTSCSSCEEEE
T ss_pred cEEEEEEEEEecCCCCCCCCEEEEEecCCCCCCcCCCCCcccccccCCCCccccEEEEEeecccccccCCCCCCCCcEEE
Confidence 67788888753 47899887765321 11 0 012357777542 23333
Q ss_pred EEEcCCceEEEecCCCccCCCceEEEEEEEccccEEEEEEcC
Q psy1323 51 VHVFGKHSTSITVGEGLNRDKWHSVMVRINVHGAKLIARVDN 92 (186)
Q Consensus 51 ~~~~g~~~~~~~~~~~v~Dg~WH~V~i~~~~~~~~l~l~vd~ 92 (186)
.++.-..... ....+.+|+.|+|.|..+...+.|.+.+..
T Consensus 148 dvNs~~S~~~--~~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~ 187 (242)
T 1qnw_A 148 DVNSIKSIKT--VKWDWRNGEVADVVITYRAPTKSLTVCLSY 187 (242)
T ss_dssp EESSSSCSEE--EECCCCTTCCEEEEEEEEGGGTEEEEEEEC
T ss_pred ecCCccccce--ecccccCCCEEEEEEEEeCCCcEEEEEEec
Confidence 2221111111 112478999999999998887788888754
No 56
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=37.41 E-value=9.1 Score=23.48 Aligned_cols=35 Identities=14% Similarity=0.295 Sum_probs=22.3
Q ss_pred CCCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 114 LTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 114 ~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
....||||++|.......+...-..| |-|.++.|-
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~-G~i~~v~i~ 44 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQY-GEVVDVFIP 44 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcc-CCEEEEEEe
Confidence 35689999999987654433222233 677777773
No 57
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.00 E-value=19 Score=22.77 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=23.3
Q ss_pred CCCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 114 LTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 114 ~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
....||||++|.......+...-..| |-|.++.+-
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~f-G~v~~v~i~ 48 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPF-GKVTNILML 48 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTT-SCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEE
Confidence 34589999999876654444333445 777777774
No 58
>3o12_A Uncharacterized protein YJL217W; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.50A {Saccharomyces cerevisiae}
Probab=34.36 E-value=1.3e+02 Score=21.85 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=21.4
Q ss_pred EEEEEEEc-CCCCeEEEEeeccCCCCCCCCceE--EEEEeCCEEEE
Q psy1323 8 EISFQFRT-RLPHGLLVYHSVKDRPEGLDPYAL--YVIVEKGQLKV 50 (186)
Q Consensus 8 ~is~~frT-~~~~GlLl~~~~~~~~~~~d~~~~--~l~l~~G~l~~ 50 (186)
.|++.++. .+.-||++|..... ++ .|+..+|..++
T Consensus 88 kv~~~~~~~~DqAGL~v~~d~~~--------Wik~gie~~d~~~~l 125 (221)
T 3o12_A 88 RVQGSYESLYDQAGIMVRIDDGH--------WLKAGIEISDGHAML 125 (221)
T ss_dssp EEEECCCSTTCEEEEEEEEETTE--------EEEEEEEEETTEEEE
T ss_pred EEEeecccccceEEEEEEECCCC--------eEEEEEEEECCeEEE
Confidence 34444444 35678888875433 55 66777887655
No 59
>2ltn_A PEA lectin, alpha chain; 1.70A {Pisum sativum} SCOP: b.29.1.1 PDB: 1bqp_A* 1hkd_A 1ofs_A* 1rin_A* 1lof_C* 1len_A 1lem_A 1les_A* 2lal_A 1loe_A 1loa_A* 1loc_A* 1lod_A* 1lob_A 1lof_A* 1log_A* 1lgc_A* 1lgb_A* 2b7y_A*
Probab=33.79 E-value=79 Score=22.41 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=20.0
Q ss_pred CccCCCceEEEEEEEccccEEEEEE
Q psy1323 66 GLNRDKWHSVMVRINVHGAKLIARV 90 (186)
Q Consensus 66 ~v~Dg~WH~V~i~~~~~~~~l~l~v 90 (186)
.+.+|++++|.|..+...+.|.+.+
T Consensus 153 ~l~~G~~~~v~I~Yd~~~~~L~V~l 177 (181)
T 2ltn_A 153 KLQNGEEANVVIAFNAATNVLTVSL 177 (181)
T ss_dssp CCCTTCCEEEEEEEETTTTEEEEEE
T ss_pred ccCCCCEEEEEEEEECCCCEEEEEE
Confidence 4779999999998888777776654
No 60
>1f9k_A Acidic lectin; legume lectin, glycosylated protein, H-antigenic specificity agglutinin, sugar binding protein; HET: NAG MAN AMG; 3.00A {Psophocarpus tetragonolobus} SCOP: b.29.1.1 PDB: 1fay_A*
Probab=32.21 E-value=1.5e+02 Score=21.84 Aligned_cols=85 Identities=14% Similarity=0.113 Sum_probs=48.2
Q ss_pred eeEEEEEEEcC-------CCCeEEEEeeccCC-CC------CC-----CCceEEEEEeC---------CEEEEEEEcCCc
Q psy1323 6 CREISFQFRTR-------LPHGLLVYHSVKDR-PE------GL-----DPYALYVIVEK---------GQLKVVHVFGKH 57 (186)
Q Consensus 6 ~~~is~~frT~-------~~~GlLl~~~~~~~-~~------~~-----d~~~~~l~l~~---------G~l~~~~~~g~~ 57 (186)
.|+.+|.|+-. ..+|+-|+...... ++ +. ..+.+++|+.- .+|-+.++.-..
T Consensus 68 sFsT~F~F~I~~~~~~~~~gdGlAF~l~p~~~~~~~~g~~LGl~n~~~~~~~vAVEFDT~~N~~Dp~~nHVgIdvns~~S 147 (238)
T 1f9k_A 68 SFETRFSFNITQPYAYPEPADGLTFFMVPPNSPQGEDGGNLGVFKPPEGDNAFAVEFDTFQNTWDPQVPHIGIDVNSIVS 147 (238)
T ss_dssp EEEEEEEEEEECCCSSSCCCEEEEEEEECTTCCCCCSGGGTTTCCSSCCSCCEEEEEECSCCTTCCSSSEEEEEESSSSC
T ss_pred eEEEEEEEEEecCCCCCCCCCcEEEEEccCCCCCCCCCCcccccccCCCCcEEEEEEecccCCCCCCCCeEEEecCCccc
Confidence 46677777643 25899877665321 11 00 02356777551 344443322111
Q ss_pred eEEEecCCCccCCCceEEEEEEEccccEEEEEEcC
Q psy1323 58 STSITVGEGLNRDKWHSVMVRINVHGAKLIARVDN 92 (186)
Q Consensus 58 ~~~~~~~~~v~Dg~WH~V~i~~~~~~~~l~l~vd~ 92 (186)
... ....+.+|++++|.|..+...+.|.+.++.
T Consensus 148 ~~s--~~~~l~~g~~~~v~I~Yd~~~~~L~V~l~~ 180 (238)
T 1f9k_A 148 SKT--LHFQLENGGVANVVIKYDSPTKILNVVLAF 180 (238)
T ss_dssp SEE--EECCCCTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred cce--EeecccCCCEEEEEEEEeCCCCEEEEEEec
Confidence 111 112478999999999998877778877754
No 61
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.13 E-value=28 Score=20.52 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=21.0
Q ss_pred CCcEEEcccCCCCccccceecCCCcEEEEeeEEE
Q psy1323 115 TSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVL 148 (186)
Q Consensus 115 ~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~i 148 (186)
...||||++|.......+...-..| |-|.++.+
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~-G~i~~~~i 37 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPY-GKIVSTKA 37 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTT-SCEEEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEE
Confidence 4589999999876654433222233 56777776
No 62
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.91 E-value=15 Score=22.13 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=21.5
Q ss_pred CCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 115 TSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 115 ~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
...||||++|.......+...-..| |-|.++.+-
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~i~ 38 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQY-GDVMDVFIP 38 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTT-SCCCEEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHc-CCeeEEEEe
Confidence 3589999999876654433223333 667777773
No 63
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=30.28 E-value=13 Score=23.35 Aligned_cols=33 Identities=12% Similarity=0.237 Sum_probs=20.6
Q ss_pred CCcEEEcccCCCCccccceecCCCcEEEEeeEEE
Q psy1323 115 TSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVL 148 (186)
Q Consensus 115 ~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~i 148 (186)
+..||||++|.......+...-..| |-|.++.+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~-G~I~~v~i 51 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSI-GEVESAKL 51 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT-SCEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEeEe
Confidence 4589999999887654332211223 55777766
No 64
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=29.85 E-value=17 Score=23.26 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=23.7
Q ss_pred CCCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 114 LTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 114 ~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
....||||++|.......+...-..| |-+.++.+-
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~f-G~V~~v~i~ 54 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEF-GPISYVVVM 54 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGG-SCEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhcc-CCEEEEEEE
Confidence 34689999999886654443333445 778888773
No 65
>1dbn_A MAL, protein (leukoagglutinin); plant lectin, carbohydrate binding, sialyllactose, sugar BIN protein; HET: NAG SIA GAL BGC; 2.75A {Maackia amurensis} SCOP: b.29.1.1
Probab=29.51 E-value=1.7e+02 Score=21.59 Aligned_cols=27 Identities=11% Similarity=-0.056 Sum_probs=22.5
Q ss_pred CccCCCceEEEEEEEccccEEEEEEcC
Q psy1323 66 GLNRDKWHSVMVRINVHGAKLIARVDN 92 (186)
Q Consensus 66 ~v~Dg~WH~V~i~~~~~~~~l~l~vd~ 92 (186)
.+.+|+.++|.|..+...+.|.+.+..
T Consensus 162 ~l~~g~~~~v~I~Yd~~~~~L~V~l~~ 188 (239)
T 1dbn_A 162 DWINGGVAFATITYLAPNKTLIASLVY 188 (239)
T ss_dssp CCCTTCCEEEEEEEEGGGTEEEEEEEE
T ss_pred cccCCCEEEEEEEEeCCCcEEEEEEcc
Confidence 488999999999998887788877753
No 66
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.36 E-value=12 Score=24.19 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=21.7
Q ss_pred CCCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 114 LTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 114 ~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
....||||++|.......+...-..| |=|.++.|-
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~f-G~V~~v~i~ 49 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPF-GKVTNLLML 49 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHH-CCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEE
Confidence 34689999999886554333222223 667777664
No 67
>1fx5_A UEA-I, UE-I, anti-H(O) lectin I; legume lectin, HOMO-dimer, fucose specific lectin, SUG binding protein; HET: NAG FUC BMA MAN; 2.20A {Ulex europaeus} SCOP: b.29.1.1 PDB: 1jxn_A*
Probab=29.14 E-value=1.5e+02 Score=22.03 Aligned_cols=27 Identities=11% Similarity=0.046 Sum_probs=22.2
Q ss_pred CccCC--CceEEEEEEEccccEEEEEEcC
Q psy1323 66 GLNRD--KWHSVMVRINVHGAKLIARVDN 92 (186)
Q Consensus 66 ~v~Dg--~WH~V~i~~~~~~~~l~l~vd~ 92 (186)
.+.+| +.++|.|..+...+.|.+.+..
T Consensus 159 ~l~~G~~~~~~v~I~Yd~~~~~L~V~l~~ 187 (242)
T 1fx5_A 159 NKRYGLNNVANVEIIYEASSKTLTASLTY 187 (242)
T ss_dssp CCCCSGGGCEEEEEEEETTTTEEEEEEEE
T ss_pred cccCCCceeEEEEEEEeCCCCEEEEEEec
Confidence 47899 9999999998877778877753
No 68
>1epw_A Bontoxilysin B, botulinum neurotoxin type B; zinc, metalloprotease, transmembrane, hydrolase; 1.90A {Clostridium botulinum} SCOP: b.29.1.6 b.42.4.2 d.92.1.7 h.4.2.1 PDB: 1f31_A* 1g9a_A* 1g9b_A* 1g9c_A* 1g9d_A* 1i1e_A* 1s0b_A 1s0c_A 1s0d_A 1s0e_A 1s0f_A 1s0g_A 2np0_A 3zuq_A 2etf_A 2xhl_A 1z0h_A 2nm1_A 3g94_A 1f82_A ...
Probab=28.88 E-value=3.6e+02 Score=25.17 Aligned_cols=120 Identities=8% Similarity=0.024 Sum_probs=66.6
Q ss_pred eeEEEEEEEcCCC-----C------eEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCc-eEEEe----cCCCcc-
Q psy1323 6 CREISFQFRTRLP-----H------GLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKH-STSIT----VGEGLN- 68 (186)
Q Consensus 6 ~~~is~~frT~~~-----~------GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~-~~~~~----~~~~v~- 68 (186)
.|+|+|..|...- . -.|+-.-... + ++ .+.+.++.+...+.-..+ ...+. ....+.
T Consensus 924 nFSIsFWiRipk~~~~~it~y~~nEyTiIg~~~nN-s-----GW-~Isi~~n~lIWtl~D~ng~~k~I~f~y~~~~nisd 996 (1290)
T 1epw_A 924 DFSVSFWIRIPKYKNDGIQNYIHNEYTIINCMKNN-S-----GW-KISIRGNRIIWTLIDINGKTKSVFFEYNIREDISE 996 (1290)
T ss_dssp CEEEEEEEECCCCCGGGHHHHHHCEEEEEEEEETT-E-----EE-EEEEETTEEEEEEECTTCCEEEEEEECCSSCSSCS
T ss_pred ceeEEEEEEcCCccccccccccCCCceEEEEecCC-C-----Cc-EEEECCCeEEEEEecCCCcceeEEEecccccchhh
Confidence 5889999998554 1 2333222111 1 22 567788888876544333 22222 223333
Q ss_pred -CCCceEEEEEEEccccEEEEEEcCCcceeEEeecCCCCCceeecCCCCcEEEcccCCCCccccceecCCCcEEEEeeEE
Q psy1323 69 -RDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMV 147 (186)
Q Consensus 69 -Dg~WH~V~i~~~~~~~~l~l~vd~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~ 147 (186)
-++||.|+|..+ .+ .+.+-||+....... ... . ..+.....+-+|-+. ...+++.++|++++
T Consensus 997 yiNkW~fVTItnd-lg-~~~IYING~Li~~~~--I~~---L-~dI~ss~~I~fglvn---------~~D~~~~i~Id~f~ 1059 (1290)
T 1epw_A 997 YINRWFFVTITNN-LN-NAKIYINGKLESNTD--IKD---I-REVIANGEIIFKLDG---------DIDRTQFIWMKYFS 1059 (1290)
T ss_dssp STTSCEEEEEEEC-SS-EEEEEETTEEEEEEE--CSS---C-CCCCCCSEEEEEEEE---------SCCTTCCEEEEEEE
T ss_pred ccCceEEEEEEec-CC-ceEEEECCEEeechh--hhh---h-hceeecceEEEEecc---------CCCCCceeeEeeEE
Confidence 399999999877 43 677789987644321 110 0 122233344443111 13566899999999
Q ss_pred EC
Q psy1323 148 LS 149 (186)
Q Consensus 148 in 149 (186)
|-
T Consensus 1060 If 1061 (1290)
T 1epw_A 1060 IF 1061 (1290)
T ss_dssp EE
T ss_pred Ee
Confidence 95
No 69
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.16 E-value=16 Score=24.14 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=21.9
Q ss_pred CCCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 114 LTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 114 ~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
....||||++|.......+...-..| |-|.++.|-
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~f-G~V~~v~i~ 64 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPF-GKVTNLLML 64 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTT-SCCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEe
Confidence 34589999999886654433223334 666666663
No 70
>3zyp_A CIP1; metal binding protein, calcium-binding, CBM-containing, beta sandwich jelly roll, carbohydrate-binding; HET: NAG; 1.50A {Hypocrea jecorina}
Probab=28.14 E-value=1.7e+02 Score=20.99 Aligned_cols=56 Identities=5% Similarity=0.033 Sum_probs=35.0
Q ss_pred eEEEEEeCCEEEEEEEcCCceEEE--------ecCCCccCCCceEEEEEEEccccEEEEEEcCCcce
Q psy1323 38 ALYVIVEKGQLKVVHVFGKHSTSI--------TVGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDE 96 (186)
Q Consensus 38 ~~~l~l~~G~l~~~~~~g~~~~~~--------~~~~~v~Dg~WH~V~i~~~~~~~~l~l~vd~~~~~ 96 (186)
.+.+.-..+.+...+ +....+. .....+..|+||.|++.+.. ...+.+-+|+....
T Consensus 98 ~~r~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~s~~l~~g~W~cvE~~~~~-~G~~~~W~DG~~v~ 161 (218)
T 3zyp_A 98 HLRIGGQSQVLDYNR--ESDDATLPDLSPNGIASTVTLPTGAFQCFEYHLGT-DGTIETWLNGSLIP 161 (218)
T ss_dssp EEEEEEETTEEEEEE--TTTCCEESCSSHHHHHHSCCCCCSSCEEEEEEECS-SSCEEEEETTEECG
T ss_pred eEEeecccceeeEEE--cCCccccCcccccccccceeecCCcEEEEEEEECC-CCeEEEEECCEEee
Confidence 455555666665543 2221111 13446889999999997765 45788889987653
No 71
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.50 E-value=19 Score=22.99 Aligned_cols=33 Identities=9% Similarity=-0.006 Sum_probs=22.5
Q ss_pred CCcEEEcccCCCCccccceecCCCcEEEE-eeEEE
Q psy1323 115 TSVVLIGGLSPEEKLHGVKYIIESFIGCI-KDMVL 148 (186)
Q Consensus 115 ~~~lyiGG~p~~~~~~~~~~~~~~F~GCi-~~v~i 148 (186)
...||||++|.......+...-..| |.+ .++.|
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~-g~v~~~v~i 48 (114)
T 2cpy_A 15 KVCAHITNIPFSITKMDVLQFLEGI-PVDENAVHV 48 (114)
T ss_dssp CCEEEEESCCTTSCHHHHHHHTTTS-CCCSTTEEE
T ss_pred ccEEEEeCcCCcCCHHHHHHHHHhC-CCcCCeEEE
Confidence 4589999999887654443334445 777 67777
No 72
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.88 E-value=36 Score=20.95 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=21.3
Q ss_pred CCCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 114 LTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 114 ~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
....||||++|.......+...-..| |-|.++.+-
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~ 48 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPF-GTITSAKVM 48 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTT-SCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEE
Confidence 45689999999886654333222223 556666663
No 73
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=26.42 E-value=24 Score=21.85 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=20.9
Q ss_pred CCCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 114 LTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 114 ~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
....||||++|.......+...-..| |-|.++.|-
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~-G~i~~v~i~ 48 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPF-GVIDECTVL 48 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEE
Confidence 35689999999876543332222223 556666663
No 74
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.10 E-value=18 Score=20.88 Aligned_cols=32 Identities=28% Similarity=0.519 Sum_probs=19.1
Q ss_pred cEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 117 VVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 117 ~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
.||||++|.......+...-..| |-+.++.+-
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~-G~v~~v~i~ 33 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQF-GEVKECLVM 33 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTT-SCCCCEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEe
Confidence 58999999876554332212223 556777763
No 75
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=25.09 E-value=27 Score=20.76 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=20.6
Q ss_pred CCCcEEEcccCCCCccccceecCCCcEEEEeeEEE
Q psy1323 114 LTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVL 148 (186)
Q Consensus 114 ~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~i 148 (186)
....||||++|.......+...-..| |-|.++.+
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i 43 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKF-GEVVDCTI 43 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTT-SCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEE
Confidence 34689999999876543332222223 55666666
No 76
>2a6v_A EMP46P; beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.52A {Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a6w_A 2a6x_A
Probab=24.98 E-value=1.7e+02 Score=21.43 Aligned_cols=87 Identities=15% Similarity=0.105 Sum_probs=45.2
Q ss_pred eeeEEEEEEEcC-----CCCeEEEEeeccCC--CC----C-CCCceEEEE--Ee---C--CEEEEEEEcCCceEE-----
Q psy1323 5 LCREISFQFRTR-----LPHGLLVYHSVKDR--PE----G-LDPYALYVI--VE---K--GQLKVVHVFGKHSTS----- 60 (186)
Q Consensus 5 ~~~~is~~frT~-----~~~GlLl~~~~~~~--~~----~-~d~~~~~l~--l~---~--G~l~~~~~~g~~~~~----- 60 (186)
..|++++.||-. ..+|+=|+...... .+ + .| .|--|. +. + ..|.+.++-|.....
T Consensus 64 ~~weiev~Fri~G~~~~~gdGlA~Wyt~~~~~~~g~vfGg~~d-~f~GlgI~~Dt~~n~~p~i~~~~NDGt~~yd~~~~~ 142 (226)
T 2a6v_A 64 DAMTIEWTFRSFGFRGSTKGGLAFWLKQGNEGDSTELFGGSSK-KFNGLMILLRLDDKLGESVTAYLNDGTKDLDIESSP 142 (226)
T ss_dssp SCEEEEEEEEEESCCSCCSCEEEEEEECSCCCCCCTBTTTBCS-SCEEEEEEEEEETTTEEEEEEEEEESSSCCCTTTSC
T ss_pred CCeEEEEEEEEecCCCCCCCEEEEEEECCCCCCCcccccccCC-CccEEEEEEECCCCCCceEEEEECCCCcccCCCCCc
Confidence 468899999975 45788555443322 11 1 11 133332 21 1 245555555543111
Q ss_pred ----EecCCCccCCCceEEEEEEE-ccccEEEEEEcCC
Q psy1323 61 ----ITVGEGLNRDKWHSVMVRIN-VHGAKLIARVDNR 93 (186)
Q Consensus 61 ----~~~~~~v~Dg~WH~V~i~~~-~~~~~l~l~vd~~ 93 (186)
.. ...-|.+.-.++.|+.. ..+..+.|.||+.
T Consensus 143 ~~g~C~-~~~rn~~~~t~~ri~Y~~~~~~~l~v~id~~ 179 (226)
T 2a6v_A 143 YFASCL-FQYQDSMVPSTLRLTYNPLDNHLLKLQMDNR 179 (226)
T ss_dssp CSEEEE-CCCSSCSSCEEEEEEEEGGGTSEEEEEETTE
T ss_pred ccceEe-EeccCCCCCEEEEEEEEccCCCEEEEEEcCC
Confidence 11 11234556677877664 2356788899863
No 77
>2bqp_A Protein (PEA lectin); D-glucopyranose complex, sugar binding protein; HET: GLC; 1.90A {Pisum sativum} SCOP: b.29.1.1
Probab=24.86 E-value=2.1e+02 Score=20.99 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=22.0
Q ss_pred CccCCCceEEEEEEEccccEEEEEEcC
Q psy1323 66 GLNRDKWHSVMVRINVHGAKLIARVDN 92 (186)
Q Consensus 66 ~v~Dg~WH~V~i~~~~~~~~l~l~vd~ 92 (186)
.+.+|++++|.|..+...+.|.+.++.
T Consensus 153 ~l~~g~~~~v~I~Yd~~~~~L~V~l~~ 179 (234)
T 2bqp_A 153 KLQNGEEANVVIAFNAATNVLTVSLTY 179 (234)
T ss_dssp CCCTTCEEEEEEEEETTTTEEEEEEEE
T ss_pred EEcCCCEEEEEEEEeCCCCEEEEEEec
Confidence 477899999999988876778877754
No 78
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.66 E-value=33 Score=22.22 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=23.0
Q ss_pred CCCcEEEcccCCC-CccccceecCCCcEEEEeeEEEC
Q psy1323 114 LTSVVLIGGLSPE-EKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 114 ~~~~lyiGG~p~~-~~~~~~~~~~~~F~GCi~~v~in 149 (186)
....||||++|.. .....+...-..| |-|.++.+-
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~f-G~V~~v~i~ 59 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPY-GKIKNYILM 59 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTT-SCCSEEEEE
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhc-CCEEEEEEe
Confidence 4568999999996 5544443333444 677777774
No 79
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=24.59 E-value=16 Score=22.39 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=21.4
Q ss_pred CCCcEEEcccCC-CCccccceecCCCcEEEEeeEEEC
Q psy1323 114 LTSVVLIGGLSP-EEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 114 ~~~~lyiGG~p~-~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
....||||++|. ......+...-..| |-|.++.+.
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~-G~v~~v~i~ 44 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPY-GHIMQINIK 44 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTT-CCCCEEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhc-CCEEEEEEe
Confidence 355899999997 65543332222223 667777774
No 80
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.01 E-value=24 Score=20.84 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=21.3
Q ss_pred CCCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 114 LTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 114 ~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
....|||||+|.......+...-..| |-+.++.+.
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~-G~i~~~~~~ 45 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQF-GEIRTITVV 45 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTT-SCEEEEEEE
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhC-CCEeEEEEE
Confidence 34689999999876543332211222 557777774
No 81
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.84 E-value=40 Score=20.23 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=22.6
Q ss_pred CCCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 114 LTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 114 ~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
....||||++|.......+...-..| |-|.++.+-
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~-G~v~~v~i~ 49 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKY-GKVVKVTIM 49 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTT-SCEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc-CCeEEEEEE
Confidence 45699999999876654433222333 567788874
No 82
>3gne_A Val-1; alginate lyase, polysaccharide lyase family 14, chlorella VI lyase; HET: FLC; 1.20A {Chlorella virus} PDB: 3a0n_A* 3im0_A*
Probab=23.75 E-value=78 Score=23.89 Aligned_cols=31 Identities=13% Similarity=0.303 Sum_probs=22.5
Q ss_pred CccCCCceEEEEEEE---------ccccEEEEEEcCCcce
Q psy1323 66 GLNRDKWHSVMVRIN---------VHGAKLIARVDNRTDE 96 (186)
Q Consensus 66 ~v~Dg~WH~V~i~~~---------~~~~~l~l~vd~~~~~ 96 (186)
.+.-|+|++|+..+. ..+..+.+.||+....
T Consensus 159 ~f~~G~W~~V~q~VkLNT~~~G~g~aDG~v~v~VNG~~v~ 198 (252)
T 3gne_A 159 ALKYDVWNRIEIGTKMNTFKNGIPQLDGESYVIVNGKKEV 198 (252)
T ss_dssp CSCBTSCEEEEEEEECCCEETTEECSCEEEEEEETTEEEE
T ss_pred eEcCCceEEEEEEEEcCCCCCCCccCCceEEEEECCEEEE
Confidence 688999999997543 2234578889988763
No 83
>1wbf_A Protein (agglutinin); lectin (agglutinin), legume lectin, protein crystallography, group specificity, saccharide free form; HET: NAG; 2.30A {Psophocarpus tetragonolobus} SCOP: b.29.1.1 PDB: 2d3s_A* 2dtw_A* 1wbl_A* 2dty_A* 2du0_A* 2du1_A* 2e51_A* 2e53_A* 2zmk_A* 2zml_A* 2zmn_A* 2e7t_A* 2e7q_A*
Probab=23.35 E-value=2.3e+02 Score=20.95 Aligned_cols=85 Identities=14% Similarity=0.111 Sum_probs=49.5
Q ss_pred eeEEEEEEEcCC-------CCeEEEEeeccCC-CC------C-----CCCceEEEEEeC---------CEEEEEEEcCCc
Q psy1323 6 CREISFQFRTRL-------PHGLLVYHSVKDR-PE------G-----LDPYALYVIVEK---------GQLKVVHVFGKH 57 (186)
Q Consensus 6 ~~~is~~frT~~-------~~GlLl~~~~~~~-~~------~-----~d~~~~~l~l~~---------G~l~~~~~~g~~ 57 (186)
.|+.+|.|+-.. .+|+-|+...... ++ + ...+.+++|+.- .+|-+.++.-..
T Consensus 68 SFsT~F~F~I~~~~~~~~~gdGlAF~l~p~~~~~~~~g~~LGl~n~~~~~~~vAVEFDT~~N~~Dp~~nHVGIdvNs~~S 147 (242)
T 1wbf_A 68 SFETRFSFSIRQPFPRPHPADGLVFFIAPPNTQTGEGGGYFGIYNPLSPYPFVAVEFDTFRNTWDPQIPHIGIDVNSVIS 147 (242)
T ss_dssp EEEEEEEEECCCSCCSSCCCEEEEEEEECSSCCCCCCGGGTTTCCTTSCCCCEEEEEECSCCTTCCSSSEEEEEESSSSC
T ss_pred eEEEEEEEEEeCCCCCCCCCCcEEEEEecCCCCCCCCCCccccccCCCcCcEEEEEeccccCCCCCCCCeEEEECCCccc
Confidence 577788887543 5799877655321 11 0 012357777641 344443332111
Q ss_pred eEEEecCCCccCCCceEEEEEEEccccEEEEEEcC
Q psy1323 58 STSITVGEGLNRDKWHSVMVRINVHGAKLIARVDN 92 (186)
Q Consensus 58 ~~~~~~~~~v~Dg~WH~V~i~~~~~~~~l~l~vd~ 92 (186)
... ....+.+|++++|.|..+...+.|.+.+..
T Consensus 148 ~~~--~~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~ 180 (242)
T 1wbf_A 148 TKT--VPFTLDNGGIANVVIKYDASTKILHVVLVF 180 (242)
T ss_dssp SEE--EECCCCTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred cce--eeeEecCCCEEEEEEEEeCCCCEEEEEEcc
Confidence 111 112478999999999998877778877753
No 84
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.02 E-value=32 Score=21.07 Aligned_cols=36 Identities=17% Similarity=0.417 Sum_probs=22.7
Q ss_pred CCCCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 113 DLTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 113 ~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
.....||||++|.......+...-..| |-|.++.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~~~ 48 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKY-GKAGEVFIH 48 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTT-CCCSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhc-CCeEEEEEe
Confidence 345689999999876554333222333 567777775
No 85
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=22.87 E-value=78 Score=19.44 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=15.0
Q ss_pred cCCCceEEEEEEEcc-ccEEEEEEcCCc
Q psy1323 68 NRDKWHSVMVRINVH-GAKLIARVDNRT 94 (186)
Q Consensus 68 ~Dg~WH~V~i~~~~~-~~~l~l~vd~~~ 94 (186)
.||.|+...|.-... +...+..||-..
T Consensus 40 ~d~~wyRA~I~~~~~~~~~~V~fvDyGn 67 (94)
T 3fdr_A 40 TNGSWYRARVLGTLENGNLDLYFVDFGD 67 (94)
T ss_dssp TTTEEEEEEEEEECTTSCEEEEETTTCC
T ss_pred CCCeEEEEEEEEECCCCeEEEEEEcCCC
Confidence 489999998743222 222333356544
No 86
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.57 E-value=30 Score=21.89 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=22.1
Q ss_pred CCCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 114 LTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 114 ~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
....||||++|.......+...-..| |-|.++.+-
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~f-G~V~~v~i~ 48 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKF-GTICYVMMM 48 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTT-SCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC-CCEEEEEEE
Confidence 34689999999876554433223334 667777763
No 87
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.12 E-value=20 Score=22.61 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=19.7
Q ss_pred CCcEEEcccCCCCccccceecCCCcEEEEeeEEE
Q psy1323 115 TSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVL 148 (186)
Q Consensus 115 ~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~i 148 (186)
...|||||+|.......+...-..| |=|.++.+
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~-G~v~~v~i 43 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDK-GQVLNIQM 43 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTS-SCEEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhc-CCEEEEEE
Confidence 3589999999886543332111122 55666666
No 88
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=22.00 E-value=42 Score=21.21 Aligned_cols=34 Identities=15% Similarity=0.065 Sum_probs=22.5
Q ss_pred CCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 115 TSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 115 ~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
...||||++|.......+...-..| |-|.++.+-
T Consensus 40 ~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~~~i~ 73 (118)
T 2khc_A 40 GCNLFIYHLPQEFTDTDLASTFLPF-GNVISAKVF 73 (118)
T ss_dssp SEEEEEECSCTTCCHHHHHHHTTTS-CEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEE
Confidence 3579999999886654443223333 778888884
No 89
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=21.26 E-value=30 Score=21.29 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=22.0
Q ss_pred CCCCcEEEcccCC-CCccccceecCCCcEEEEeeEEEC
Q psy1323 113 DLTSVVLIGGLSP-EEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 113 ~~~~~lyiGG~p~-~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
.....||||++|. ......+...-..| |-|.++.+.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~-G~v~~v~i~ 56 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPY-GHIMQINIK 56 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGG-SCEEEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhc-CCEEEEEEe
Confidence 3456999999997 65543332212223 667777774
No 90
>3ffz_A Botulinum neurotoxin type E; botulinum neurotoxin serotype E, botulism, domain organization, endopeptidase, translocation, hydrolase; 2.65A {Clostridium botulinum}
Probab=21.00 E-value=5.1e+02 Score=24.12 Aligned_cols=83 Identities=12% Similarity=0.081 Sum_probs=50.3
Q ss_pred eeeEEEEEEEcCCCC----------eEEEEeeccCCCCCCCCceEEEEEeCCEEEEEEEcCCc-eEEEe-c---CCCccC
Q psy1323 5 LCREISFQFRTRLPH----------GLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKH-STSIT-V---GEGLNR 69 (186)
Q Consensus 5 ~~~~is~~frT~~~~----------GlLl~~~~~~~~~~~d~~~~~l~l~~G~l~~~~~~g~~-~~~~~-~---~~~v~D 69 (186)
..|+|+|..|...-+ -+|=..+... .++ .+.+.++.+...+.-..+ ...+. + ...++|
T Consensus 913 ~nFSIsFWiRipk~~~~~in~~nEytII~~~~~nN------sGW-kI~l~~n~iiwtl~D~ngn~k~i~f~y~~~~~isd 985 (1252)
T 3ffz_A 913 KNFSISFWVRIPNYDNKIVNVNNEYTIINCMRDNN------SGW-KVSLNHNEIIWTLQDNAGINQKLAFNYGNANGISD 985 (1252)
T ss_dssp CCCEEEEEEECCCCCSTTTCCCCCEEEEEEEETTT------EEE-EEEEETTEEEEEEECSSSCEEEEEEECCCCSBCCS
T ss_pred cceeEEEEEEcCCcCccccccCCceeEEeeccCCC------CCc-EEEEecCeEEEEEEeCCCCeeeEEEecccccchhh
Confidence 358899999985553 3433332222 134 688999999886544333 22222 1 112221
Q ss_pred --CCceEEEEEEEccccEEEEEEcCCcc
Q psy1323 70 --DKWHSVMVRINVHGAKLIARVDNRTD 95 (186)
Q Consensus 70 --g~WH~V~i~~~~~~~~l~l~vd~~~~ 95 (186)
++||-|+|..++-+.. .+-+|+.-.
T Consensus 986 yiNkW~fITITnnRL~~~-~IyINg~Li 1012 (1252)
T 3ffz_A 986 YINKWIFVTITNDRLGDS-KLYINGNLI 1012 (1252)
T ss_dssp STTSCEEEEEEECTTSEE-EEEETTEEE
T ss_pred hhcceEEEEEEeccCccc-eEEECCEEe
Confidence 8999999988776655 566887654
No 91
>1n47_A Isolectin B4; cancer antigen, vicia villosa lectin, glycoprotein TN-bindin protein, carbohydrate recognition, sugar binding protein; HET: NAG FUC TNR; 2.70A {Vicia villosa} SCOP: b.29.1.1
Probab=20.91 E-value=2.5e+02 Score=20.54 Aligned_cols=85 Identities=13% Similarity=0.128 Sum_probs=49.5
Q ss_pred eeEEEEEEEcC------CCCeEEEEeeccC-CCC------C--------CCCceEEEEEe---------CCEEEEEEEcC
Q psy1323 6 CREISFQFRTR------LPHGLLVYHSVKD-RPE------G--------LDPYALYVIVE---------KGQLKVVHVFG 55 (186)
Q Consensus 6 ~~~is~~frT~------~~~GlLl~~~~~~-~~~------~--------~d~~~~~l~l~---------~G~l~~~~~~g 55 (186)
.|+.+|.|+-. ..+|+-|+..... .++ + ...+++++|+. +.+|-+-++.-
T Consensus 66 sFsT~F~F~I~~~~~~~~gdGlAF~l~p~~~~p~~~g~~LGl~n~~~~~~~n~~vAVEFDT~~N~~Dp~~nHvGIdvns~ 145 (233)
T 1n47_A 66 SFTTSFSFVMAAPAAAAVADGLAFFLAPPDTQPQARGGFLGLFADRAHDASYQTVAVEFDTYSNAWDPNYTHIGIDTNGI 145 (233)
T ss_dssp EEEEEEEEECCCSSTTSCCEEEEEEEECTTCCCCCCGGGTTTCSSSSCCGGGCCEEEEEECSCCTTSCSSCEEEEEESSS
T ss_pred CEEEEEEEEEeCCCCCCCCCcEEEEEecCCCCCCCCCCcccccccCCCCccCceEEEEeccccCCCCCCCCcEEEccCCc
Confidence 67888888754 2579988766531 111 0 01135677754 23444433321
Q ss_pred CceEEEecCCCccCCCceEEEEEEEccccEEEEEEcC
Q psy1323 56 KHSTSITVGEGLNRDKWHSVMVRINVHGAKLIARVDN 92 (186)
Q Consensus 56 ~~~~~~~~~~~v~Dg~WH~V~i~~~~~~~~l~l~vd~ 92 (186)
..... ....+.+|+.++|.|..+...+.|.+.+..
T Consensus 146 ~S~~~--~~~~l~~g~~~~v~I~Yd~~~~~L~V~l~~ 180 (233)
T 1n47_A 146 ESKKT--TPFDMVYGEKANIVITYQASTKALAASLVF 180 (233)
T ss_dssp SCSEE--EECCCCTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred ccccc--ccccccCCCEEEEEEEEeCCCCEEEEEEec
Confidence 11111 123477999999999998877778877753
No 92
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=20.82 E-value=27 Score=21.67 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=20.4
Q ss_pred CCCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 114 LTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 114 ~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
....||||++|.......+...-..| |-|.++.+.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~-G~i~~v~~~ 44 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQF-GKLERVKKL 44 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHH-SCEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEE
Confidence 45689999999876543332111112 556666664
No 93
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.68 E-value=37 Score=20.68 Aligned_cols=35 Identities=14% Similarity=0.419 Sum_probs=21.8
Q ss_pred CCCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 114 LTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 114 ~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
....||||++|.......+...-..| |-|.++.+-
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~-G~i~~v~i~ 43 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKF-GVVTEVVMI 43 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSS-SCEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEE
Confidence 34689999999876554333222223 667777773
No 94
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.44 E-value=38 Score=20.68 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=20.9
Q ss_pred CCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 115 TSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 115 ~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
...||||++|.......+...-..| |-|.++.+-
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~~~-G~i~~v~i~ 50 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICKAH-GTVKDLRLV 50 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTT-SCEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC-CCeEEEEEE
Confidence 4589999999876554333222223 557777663
No 95
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.38 E-value=38 Score=20.82 Aligned_cols=35 Identities=11% Similarity=0.174 Sum_probs=21.7
Q ss_pred CCCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 114 LTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 114 ~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
....||||++|.......+...-..| |-|.++.|-
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~-G~v~~v~i~ 48 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQF-GKILDVEII 48 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGT-SCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc-CCeEEEEEE
Confidence 45689999999876554333222223 667777774
No 96
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=20.24 E-value=21 Score=22.00 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=20.7
Q ss_pred CCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 115 TSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 115 ~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
...||||++|.......+...-..| |-|.++.+-
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~-G~i~~~~~~ 60 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNF-GFILDFKHY 60 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTT-SCCSEEEEE
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhC-CCEEEEEEe
Confidence 4589999999876543332211223 567777773
No 97
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=20.22 E-value=30 Score=20.72 Aligned_cols=34 Identities=9% Similarity=0.026 Sum_probs=19.5
Q ss_pred CCCcEEEcccCCCCccccceecCCCcEEEEeeEEE
Q psy1323 114 LTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVL 148 (186)
Q Consensus 114 ~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~i 148 (186)
....||||++|.......+...-..| |-|.++.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~-G~v~~~~i 40 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNEC-GHVLYADI 40 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTT-SCEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEE
Confidence 34689999999876543332111112 55556655
No 98
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.13 E-value=32 Score=21.22 Aligned_cols=35 Identities=11% Similarity=0.270 Sum_probs=22.0
Q ss_pred CCCcEEEcccCCCCccccceecCCCcEEEEeeEEEC
Q psy1323 114 LTSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLS 149 (186)
Q Consensus 114 ~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v~in 149 (186)
....||||++|.......+...-..| |-|.++.+-
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~-G~i~~v~i~ 46 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKY-GRVGDVYIP 46 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT-SCEEEEECC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhc-CCEEEEEEE
Confidence 45689999999876554333222223 567777773
Done!