RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1323
(186 letters)
>gnl|CDD|238058 cd00110, LamG, Laminin G domain; Laminin G-like domains are usually
Ca++ mediated receptors that can have binding sites for
steroids, beta1 integrins, heparin, sulfatides,
fibulin-1, and alpha-dystroglycans. Proteins that
contain LamG domains serve a variety of purposes
including signal transduction via cell-surface steroid
receptors, adhesion, migration and differentiation
through mediation of cell adhesion molecules.
Length = 151
Score = 72.5 bits (178), Expect = 2e-16
Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 13/141 (9%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGL 67
ISF FRT P+GLL+Y ++ + L + +E G+L + + G S ++ L
Sbjct: 23 SISFSFRTTSPNGLLLYAGSQNG----GDF-LALELEDGRLVLRYDLGSGSLVLSSKTPL 77
Query: 68 NRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEE 127
N +WHSV V N L VD E +++ P + + +L + +GGL +
Sbjct: 78 NDGQWHSVSVERNGRSVTLS--VD---GERVVESGSPGGSALL--NLDGPLYLGGLPEDL 130
Query: 128 KLHGVKYIIESFIGCIKDMVL 148
K G+ F+GCI+D+ +
Sbjct: 131 KSPGLPV-SPGFVGCIRDLKV 150
>gnl|CDD|216930 pfam02210, Laminin_G_2, Laminin G domain. This family includes the
Thrombospondin N-terminal-like domain, a Laminin G
subfamily.
Length = 124
Score = 70.9 bits (174), Expect = 3e-16
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 14/137 (10%)
Query: 13 FRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKH-STSITVGEGLNRDK 71
FRT P+GLL+Y +D GLD AL + E G+L + + G S + G+ LN +
Sbjct: 1 FRTTQPNGLLLYAGGED---GLDFLALEL--EDGRLVLRYDLGSGGSVLLLSGKKLNDGQ 55
Query: 72 WHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHG 131
WH V V + L VD T + +L + +GGL PE+
Sbjct: 56 WHRVSVSRDGRSLTLS--VDGGTVVSEALPGSS-----SILNLNGPLYLGGL-PEDSGLS 107
Query: 132 VKYIIESFIGCIKDMVL 148
+ + E F+GCI+++ +
Sbjct: 108 LLPVTEGFVGCIRNVRV 124
>gnl|CDD|214598 smart00282, LamG, Laminin G domain.
Length = 132
Score = 68.9 bits (169), Expect = 2e-15
Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 14/142 (9%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEG- 66
ISF FRT P+GLL+Y K Y L + + G+L + + G +T
Sbjct: 1 SISFSFRTTSPNGLLLYAGSKGG----GDY-LALELRDGRLVLRYDLGSGPARLTSDPTP 55
Query: 67 LNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPE 126
LN +WH V V N L NR GL +L + +GGL +
Sbjct: 56 LNDGQWHRVAVERNGRSVTLSVDGGNRVSGESPGGLT-------ILNLDGPLYLGGLPED 108
Query: 127 EKLHGVKYIIESFIGCIKDMVL 148
KL + + F GCI+++ +
Sbjct: 109 LKLPPLP-VTPGFRGCIRNLKV 129
>gnl|CDD|215681 pfam00054, Laminin_G_1, Laminin G domain.
Length = 131
Score = 54.3 bits (131), Expect = 6e-10
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 13 FRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLNRDKW 72
FRT P GLL+Y D AL + G+L+V + G + + G+ LN KW
Sbjct: 1 FRTTEPSGLLLY---NGTQTERDFLALELR--DGRLEVSYDLGSGAAVVRSGDKLNDGKW 55
Query: 73 HSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGV 132
HSV + +G VD T L T+ D+ + +GGL
Sbjct: 56 HSVEL--ERNGRSGTLSVDGEARVTGESPLGATTDL----DVDGPLYVGGLPSLAVKLRR 109
Query: 133 KYIIESFIGCIKDMVLS 149
I SF GCI+D++++
Sbjct: 110 LAISPSFDGCIRDVIVN 126
>gnl|CDD|227508 COG5181, HSH155, U2 snRNP spliceosome subunit [RNA processing and
modification].
Length = 975
Score = 30.7 bits (69), Expect = 0.44
Identities = 35/172 (20%), Positives = 57/172 (33%), Gaps = 33/172 (19%)
Query: 15 TRLPHGLLVYHSVKDRPEGLD-PYALYVIVEKGQLKVVHVFGKHSTSITVGEGLNRDKWH 73
RL +L +D GL P V+V GK S+ V L +
Sbjct: 563 ERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFR------GKPHLSMIVSTILKLLRSK 616
Query: 74 SVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVL--IGGLSPEEKLHG 131
VRI A L+ ++ K L + L +++ +G PE
Sbjct: 617 PPDVRI--RAADLMG--------SLAKVLKACGETKELAKLGNILYENLGEDYPE----- 661
Query: 132 VKYIIESFIGCIKDMVLSAG-----KAASDLLP-IKPLIATKHEHVEEGCID 177
++ S + I + S +LP + P++ KH+ V I
Sbjct: 662 ---VLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIA 710
>gnl|CDD|178257 PLN02651, PLN02651, cysteine desulfurase.
Length = 364
Score = 29.2 bits (66), Expect = 1.4
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 87 IARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHG-----VKYII-ESFI 140
+A + DE +K L G+ + L V + G PE++ G Y+ ES +
Sbjct: 252 LAMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYVEGESLL 311
Query: 141 GCIKDMVLSAGKA 153
+K++ +S+G A
Sbjct: 312 MGLKEVAVSSGSA 324
>gnl|CDD|197312 cd09078, nSMase, Neutral sphingomyelinases (nSMase) catalyze the
hydrolysis of sphingomyelin in biological membranes to
ceramide and phosphorylcholine. Sphingomyelinases
(SMase) are phosphodiesterases that catalyze the
hydrolysis of sphingomyelin to ceramide and
phosphorylcholine. Eukaryotic SMases have been
classified according to their pH optima and are known as
acid SMase, alkaline SMase, and neutral SMase (nSMase).
Eukaryotic proteins in this family are nSMases, and are
activated by a variety of stress-inducing agents such as
cytokines or UV radiation. Ceramides and other metabolic
derivatives, including sphingosine, are lipid "second
messenger" molecules that participate in the regulation
of stress-induced cellular responses, including cell
death, adhesion, differentiation, and proliferation.
Bacterial neutral SMases, which also belong to this
domain family, are secreted proteins that act as
membrane-damaging virulence factors. They promote
colonization of the host tissue. This family belongs to
the large EEP (exonuclease/endonuclease/phosphatase)
superfamily that contains functionally diverse enzymes
that share a common catalytic mechanism of cleaving
phosphodiester bonds.
Length = 280
Score = 27.7 bits (62), Expect = 3.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 38 ALYVIVEKGQLKVVHVFGKH 57
LY + KG KV HVFG H
Sbjct: 115 VLYAKINKGGTKVYHVFGTH 134
>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain.
Length = 84
Score = 25.8 bits (57), Expect = 5.2
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 89 RVDNRTDETIIKGLDPNTNYGVT 111
V T + GL P T Y V
Sbjct: 49 TVPGTTTSYTLTGLKPGTEYEVR 71
>gnl|CDD|234897 PRK01096, PRK01096, deoxyguanosinetriphosphate
triphosphohydrolase-like protein; Provisional.
Length = 440
Score = 26.8 bits (60), Expect = 7.3
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 13/44 (29%)
Query: 14 RTRLPH-----------GLLVYHSVKDR--PEGLDPYALYVIVE 44
TRL H G+ V ++K+ P+ + P + IV+
Sbjct: 60 HTRLTHSLEVSCVGRSLGMRVGETLKEEKLPDWISPADIGAIVQ 103
>gnl|CDD|220704 pfam10343, DUF2419, Protein of unknown function (DUF2419). This is
a family of conserved proteins found from plants to
humans. The function is not known. A few members are
annotated as being cobyrinic acid a,c-diamide synthetase
but this could not be confirmed.
Length = 282
Score = 26.9 bits (60), Expect = 7.5
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 129 LHGV-KYIIESFIGCIKDMVLSAGKAASDLL 158
L + ++E F G + + SA K+A+ L+
Sbjct: 99 LREAGRVLLEKFDGSFVNCIKSANKSAAALV 129
>gnl|CDD|224882 COG1971, COG1971, Predicted membrane protein [Function unknown].
Length = 190
Score = 26.4 bits (59), Expect = 8.4
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 131 GVKYIIESFIGCIKDMVLSAGKAASDLLPIKPL-IAT 166
G+K IIE F + V A K + + L IAT
Sbjct: 81 GLKMIIEGFKNEEDEFVDPAEKHDLNFKELILLAIAT 117
>gnl|CDD|237916 PRK15130, PRK15130, spermidine N1-acetyltransferase; Provisional.
Length = 186
Score = 26.3 bits (58), Expect = 8.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 34 LDPYALYVIVEKGQLKVVHVFGK 56
L+ Y LY+IV+K K +H++ K
Sbjct: 115 LNLYKLYLIVDKENEKAIHIYRK 137
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.413
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,355,576
Number of extensions: 871351
Number of successful extensions: 675
Number of sequences better than 10.0: 1
Number of HSP's gapped: 666
Number of HSP's successfully gapped: 19
Length of query: 186
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 95
Effective length of database: 6,901,388
Effective search space: 655631860
Effective search space used: 655631860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)