RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1323
(186 letters)
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 95.5 bits (237), Expect = 1e-23
Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 23/185 (12%)
Query: 4 RLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITV 63
+ FQF+T GL++Y+ +G D + ++ KG L V G + I
Sbjct: 25 YTSMHLFFQFKTTSLDGLILYN----SGDGNDFIVVELV--KGYLHYVFDLGNGANLIKG 78
Query: 64 --GEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIG 121
+ LN ++WH+VM+ + + ++D + I T DL S + IG
Sbjct: 79 SSNKPLNDNQWHNVMISRDTSNLHTV-KIDTKITTQI-------TAGARNLDLKSDLYIG 130
Query: 122 GLSPE--EKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGCIDKK 179
G++ E + L + + E F GC+ + L+ L + + +E GC
Sbjct: 131 GVAKETYKSLPKLVHAKEGFQGCLASVDLN-----GRLPDLISDALFCNGQIERGCEGPS 185
Query: 180 SPCNR 184
+ C
Sbjct: 186 TTCQE 190
Score = 65.0 bits (158), Expect = 5e-13
Identities = 30/179 (16%), Positives = 57/179 (31%), Gaps = 27/179 (15%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITV-GEG 66
++ F T +LV GL Y L + + +G++ V G +I
Sbjct: 252 RLAIGFSTVQKEAVLVRVDSSS---GLGDY-LELHIHQGKIGVKFNVGTDDIAIEESNAI 307
Query: 67 LNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPE 126
+N K+H V + A L +VD +I+ + + + ++IGG
Sbjct: 308 INDGKYHVVRFTRSGGNATL--QVD---SWPVIERYPAGRQLTIF-NSQATIIIGGKEQG 361
Query: 127 EKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGCIDKKSPCNRL 185
+ F G + + + L + G + +RL
Sbjct: 362 ----------QPFQGQLSGLYY------NGLKVLNMAAENDANIAIVGNVRLVGEVSRL 404
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 91.8 bits (227), Expect = 4e-22
Identities = 37/191 (19%), Positives = 69/191 (36%), Gaps = 21/191 (10%)
Query: 1 MSFRLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVV-HVFGKHST 59
+ E+SFQ +TR GL++Y EG + ++ G+L++ +F
Sbjct: 16 WNACCESEMSFQLKTRSARGLVLYFD----DEGFCDFLELILTRGGRLQLSFSIFCAEPA 71
Query: 60 SITVGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVL 119
++ +N WH+V +R L +D + + + + S +
Sbjct: 72 TLLTDTPVNDGAWHNVRIRRQFRNTTLF--IDQVEAKWV-----EVKSKRRDMTVFSGLF 124
Query: 120 IGGLSPEEKLHGVKYII------ESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEE 173
+GGL PE + +K + E F G I+D+ + + A L + E
Sbjct: 125 VGGLPPELRAAALKLTLASVREREPFKGWIRDVRVQSSLA---LPVDSGEVKLDDEPPNS 181
Query: 174 GCIDKKSPCNR 184
G
Sbjct: 182 GGGSPCEAGEE 192
Score = 81.0 bits (199), Expect = 2e-18
Identities = 38/178 (21%), Positives = 72/178 (40%), Gaps = 19/178 (10%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGL 67
+ FQF+T GL++Y+S +G D + ++ G + + + L
Sbjct: 861 HLFFQFKTTSLDGLILYNS----GDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSNKPL 916
Query: 68 NRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPE- 126
N ++WH+VM+ + + ++D + I G DL S + IGG++ E
Sbjct: 917 NDNQWHNVMISRDTSNLHTV-KIDTKITTQITAGARNL-------DLKSDLYIGGVAKET 968
Query: 127 -EKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGCIDKKSPCN 183
+ L + + E F GC+ + L+ L + + +E GC + C
Sbjct: 969 YKSLPKLVHAKEGFQGCLASVDLN-----GRLPDLISDALFCNGQIERGCEGPSTTCQ 1021
Score = 71.8 bits (175), Expect = 4e-15
Identities = 29/155 (18%), Positives = 58/155 (37%), Gaps = 22/155 (14%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYA-------LYVIVEKGQLKVVHVFGKHSTS 60
ISF FRT P+GL+++ K R + + + + G L ++ G +
Sbjct: 445 SISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIK 504
Query: 61 I-TVGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVL 119
I + + +N +W+ V + + + V+ G DL +
Sbjct: 505 IKALQKKVNDGEWYHVDFQRDGRSGTI--SVNTLRTPYTAPG------ESEILDLDDELY 556
Query: 120 IGGLSPEE------KLHGVKYIIESFIGCIKDMVL 148
+GGL + + ++GCI+D+ +
Sbjct: 557 LGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFI 591
Score = 61.0 bits (147), Expect = 2e-11
Identities = 23/143 (16%), Positives = 47/143 (32%), Gaps = 21/143 (14%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITV-GEG 66
++ F T +LV L + + +G++ V G +I
Sbjct: 1084 RLAIGFSTVQKEAVLVRVDSSSGL----GDYLELHIHQGKIGVKFNVGTDDIAIEESNAI 1139
Query: 67 LNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPE 126
+N K+H V + A L +VD +I+ + + + ++IGG
Sbjct: 1140 INDGKYHVVRFTRSGGNATL--QVD---SWPVIERYPAGRQLTI-FNSQATIIIGGKEQG 1193
Query: 127 EKLHGVKYIIESFIGCIKDMVLS 149
+ F G + + +
Sbjct: 1194 ----------QPFQGQLSGLYYN 1206
Score = 57.9 bits (139), Expect = 2e-10
Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 22/147 (14%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVE--KGQLKVVHVFG---KHSTSIT 62
EI+ F+T +GL+++ YV + G + +V G +
Sbjct: 257 EITLSFKTLQRNGLMLHTGKSAD---------YVNLALKNGAVSLVINLGSGAFEALVEP 307
Query: 63 VGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGG 122
V N + WH V++ + ++ VD G + +GG
Sbjct: 308 VNGKFNDNAWHD--VKVTRNLRQVTISVD---GILTTTGYTQEDYTML--GSDDFFYVGG 360
Query: 123 LSPEEKLHGVKYIIESFIGCIKDMVLS 149
L G + +F+GC+K++V
Sbjct: 361 SPSTADLPGSP-VSNNFMGCLKEVVYK 386
Score = 49.8 bits (118), Expect = 1e-07
Identities = 30/142 (21%), Positives = 64/142 (45%), Gaps = 16/142 (11%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGL 67
++S +FR++ +G+L+ + +D + L + ++ G++K+ GK ++ G L
Sbjct: 683 DVSLRFRSQRAYGILMATTSRDSAD-----TLRLELDAGRVKLTVNLGKGPETLFAGYNL 737
Query: 68 NRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEE 127
N ++WH+ VR+ G L VD++ T G + L + G+ E
Sbjct: 738 NDNEWHT--VRVVRRGKSLKLTVDDQQAMT-------GQMAGDHTRLEFHNIETGIITER 788
Query: 128 KLHGVKYIIESFIGCIKDMVLS 149
+ +FIG ++ + +
Sbjct: 789 RYLSSVP--SNFIGHLQSLTFN 808
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A
{Bos taurus}
Length = 182
Score = 85.3 bits (211), Expect = 2e-21
Identities = 34/151 (22%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGL 67
++S +FR++ +G+L+ + +D + L + ++ G++K+ GK ++ G L
Sbjct: 30 DVSLRFRSQRAYGILMATTSRDSAD-----TLRLELDAGRVKLTVNLGKGPETLFAGYNL 84
Query: 68 NRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEE 127
N ++WH+ VR+ G L VD D+ + G + + + G ++
Sbjct: 85 NDNEWHT--VRVVRRGKSLKLTVD---DQQAMTGQMAGDHTRLEFHN---IETGIITERR 136
Query: 128 KLHGVKYIIESFIGCIKDMVLSAGKAASDLL 158
L V +FIG ++ + + G A DL
Sbjct: 137 YLSSVP---SNFIGHLQSLTFN-GMAYIDLC 163
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein;
HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB:
1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Length = 205
Score = 82.3 bits (203), Expect = 5e-20
Identities = 32/179 (17%), Positives = 62/179 (34%), Gaps = 16/179 (8%)
Query: 1 MSFRLCR----EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGK 56
M+F L + SF+ RT P G++ Y D D + L + G+ ++
Sbjct: 30 MTFDLTKITKTSSSFEVRTWDPEGVIFYG---DTNPKDDWFMLGL--RDGRPEIQLHNHW 84
Query: 57 HSTSITVGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTS 116
++ G L+ +WH V V++ L VD E +++ +
Sbjct: 85 AQLTVGAGPRLDDGRWHQVEVKMEGDSVLLE--VD---GEEVLRLRQVSGPLTSKRHPIM 139
Query: 117 VVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGC 175
+ +GGL + ++ + GC++ K A + + G
Sbjct: 140 RIALGGL-LFPASNLRLPLVPALDGCLRRDSW-LDKQAEISASAPTSLRSCDVESNPGI 196
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding
protein; 1.9A {Mus musculus}
Length = 383
Score = 85.0 bits (210), Expect = 5e-20
Identities = 28/141 (19%), Positives = 56/141 (39%), Gaps = 12/141 (8%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGL 67
++ RT GL+ Y + +++ D L + +G+L + GK T ++ L
Sbjct: 46 QVQLSIRTFASSGLIYYVAHQNQM---DYATLQLQ--EGRLHFMFDLGKGRTKVSHPALL 100
Query: 68 NRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEE 127
+ KWH+ V+ K VD + + + D+ + +GGL
Sbjct: 101 SDGKWHT--VKTEYIKRKAFMTVDGQESPS---VTVVGKATTL--DVERKLYLGGLPSHY 153
Query: 128 KLHGVKYIIESFIGCIKDMVL 148
+ + I S CI ++++
Sbjct: 154 RARNIGTITHSIPACIGEIMV 174
Score = 72.7 bits (178), Expect = 1e-15
Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 20/172 (11%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITV---- 63
+I+ +FRT +G+L+ S A+ + + G++ G + T
Sbjct: 223 QITLEFRTTSKNGVLLGISSAKVD------AIGLEIVDGKVLFHVNNGAGRITATYQPRA 276
Query: 64 GEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGL 123
L KWH++ + H L VD + ++D + +GG
Sbjct: 277 ARALCDGKWHTLQAHKSKHRIVL--TVDGNSVRAESPHTHS-----TSADTNDPIYVGGY 329
Query: 124 SPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGC 175
K + + SF GC++++ LS G L + C
Sbjct: 330 PAHIKQNSLSS-RASFRGCVRNLRLSRGSQVQSLDLSRAF--DLQGVFPHSC 378
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus}
SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Length = 394
Score = 84.3 bits (208), Expect = 1e-19
Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 13/141 (9%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGL 67
I + RT GLL Y + + D + + G + G TS + +
Sbjct: 60 TIELEVRTEAESGLLFYMARINHA---DFATVQLR--NGFPYFSYDLGSGDTSTMIPTKI 114
Query: 68 NRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEE 127
N +WH ++I + I VD+ + +TI + + ++ +GGL
Sbjct: 115 NDGQWHK--IKIVRVKQEGILYVDDASSQTISPKKADILD------VVGILYVGGLPINY 166
Query: 128 KLHGVKYIIESFIGCIKDMVL 148
+ + S GC++++ +
Sbjct: 167 TTRRIGPVTYSLDGCVRNLHM 187
Score = 72.0 bits (176), Expect = 2e-15
Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 17/171 (9%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHST--SITVGE 65
+ F+FRT P G+L+ S + D + +I EK V + G+ + +
Sbjct: 235 LVEFEFRTTRPTGVLLGVSSQKM----DGMGIEMIDEKLMFHVDNGAGRFTAIYDAEIPG 290
Query: 66 GLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSP 125
+ +WH V + + +L VD + ++D V +GG
Sbjct: 291 HMCNGQWHKVTAKKIKNRLEL--VVDGNQVDAQSPNSAS-----TSADTNDPVFVGGFPG 343
Query: 126 EEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVE-EGC 175
G+ F GCI+ + L K L + A + V+ C
Sbjct: 344 GLNQFGLTT-NIRFRGCIRSLKL--TKGTGKPLEVNFAKALELRGVQPVSC 391
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
glycoprotein, laminin EGF-like domain, extracellular
matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
musculus}
Length = 608
Score = 84.4 bits (208), Expect = 1e-19
Identities = 25/180 (13%), Positives = 58/180 (32%), Gaps = 12/180 (6%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEG- 66
I +T + LL Y D A+ + KG++ + G + +
Sbjct: 34 NIVVHVKTAVADNLLFYLGSAKFI---DFLAIEMR--KGKVSFLWDVGSGVGRVEYPDLT 88
Query: 67 LNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTS----DLTSVVLIGG 122
++ W+ + + R + +++ + + + D +++ +GG
Sbjct: 89 IDDSYWYRIEASRTGRNGSISVRALDGPKASMVPSTYHSVSPPGYTILDVDANAMLFVGG 148
Query: 123 LSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGCIDKKSPC 182
L+ + K +I +F GC+ + K + K V D +
Sbjct: 149 LTGKIKKADAVRVI-TFTGCMGETYFD-NKPIGLWNFREKEGDCKGCTVSPQVEDSEGTI 206
Score = 75.9 bits (186), Expect = 1e-16
Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 17/184 (9%)
Query: 1 MSFRLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVE--KGQLKVVHVFGKHS 58
+ + F+FRT LL+Y + +D + ++ VE G +KV + G
Sbjct: 221 RWYPNISTVMFKFRTFSSSALLMYLATRDLKD-------FMSVELSDGHVKVSYDLGSGM 273
Query: 59 TSITVGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVV 118
TS+ + N KW + + A + + E + N+G+ +
Sbjct: 274 TSVVSNQNHNDGKWKAFTLSRIQKQANISIVDIDSNQEENVATSSSGNNFGLDLKADDKI 333
Query: 119 LIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGCIDK 178
GGL P + + ++ + GC+KD+ +S P L + + V +GC +
Sbjct: 334 YFGGL-PTLRNLRPEVNVKKYSGCLKDIEISRT-------PYNILSSPDYVGVTKGCSLE 385
Query: 179 KSPC 182
Sbjct: 386 NVYT 389
Score = 70.1 bits (171), Expect = 1e-14
Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 20/151 (13%)
Query: 2 SFRLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSI 61
S + EI+ F TR G+++ S + YA++ + KG+L+V G +
Sbjct: 404 SIDVGTEINLSFSTRNESGIILLGSGGGQ----AYYAIF--LNKGRLEVHLSSGTRTMRK 457
Query: 62 TV----GEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSV 117
V + + HSV V + ++D +
Sbjct: 458 IVIKPEPNRFHDGREHSVHVERTRGIFTV--QIDEDRRHMQNLTEEQPIE-------VKK 508
Query: 118 VLIGGLSPEEKLHGVKYIIESFIGCIKDMVL 148
+ +GG P E I +F GC+ ++V+
Sbjct: 509 LFVGGA-PPEFQPSPLRNIPAFQGCVWNLVI 538
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2,
protein structure initiative; 1.40A {Mus musculus}
Length = 189
Score = 79.9 bits (197), Expect = 3e-19
Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 10/142 (7%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGL 67
+ F R P GLL+Y+ K +G D +L + L+ + GK + I E +
Sbjct: 37 ALEMVFLARGPSGLLLYNGQKTDGKG-DFVSLALH--NRHLEFRYDLGKGAAIIRSKEPI 93
Query: 68 NRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEE 127
W V + N L +V D + G P + + +L + +GG
Sbjct: 94 ALGTWVRVFLERNGRKGAL--QVG---DGPRVLGESPVPHTML--NLKEPLYVGGAPDFS 146
Query: 128 KLHGVKYIIESFIGCIKDMVLS 149
KL + F G I+ + L
Sbjct: 147 KLARGAAVASGFDGAIQLVSLR 168
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal
binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Length = 195
Score = 78.8 bits (194), Expect = 8e-19
Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 8/141 (5%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGL 67
I + RT GLL++ V+ G + + ++ G L + G + + +
Sbjct: 33 TIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQDGHLVFRYQLGSGEARLVSEDPI 92
Query: 68 NRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEE 127
N +WH V + VD E ++ G P N V + V IGG
Sbjct: 93 NDGEWHRVTALREGRRGSIQ--VD---GEELVSGRSPGPNVAV--NAKGSVYIGGAPDVA 145
Query: 128 KLHGVKYIIESFIGCIKDMVL 148
L G ++ GC+K++VL
Sbjct: 146 TLTGGRF-SSGITGCVKNLVL 165
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin
G-like domain, jellyroll, androgen binding protein
(ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4
PDB: 1kdk_A* 1kdm_A*
Length = 170
Score = 76.9 bits (189), Expect = 3e-18
Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 21/152 (13%)
Query: 1 MSFRLCRE----ISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGK 56
M+F L + SF+ RT P G++ Y D D + L + G+ ++
Sbjct: 18 MTFDLTKITKTSSSFEVRTWDPEGVIFYG---DTNPKDDWFMLGL--RDGRPEIQLHNHW 72
Query: 57 HSTSITVGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTS 116
++ G L+ +WH V V++ L VD + + V+
Sbjct: 73 AQLTVGAGPRLDDGRWHQVEVKMEGDSVLLE--VDGEEVLRLRQ---------VSGHPIM 121
Query: 117 VVLIGGLSPEEKLHGVKYIIESFIGCIKDMVL 148
+ +GGL + ++ + GC++
Sbjct: 122 RIALGGL-LFPASNLRLPLVPALDGCLRRDSW 152
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller,
laminin-G, signaling, protein binding; HET: NAG; 2.85A
{Rattus norvegicus} PDB: 3v65_A
Length = 191
Score = 76.0 bits (187), Expect = 8e-18
Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 12/142 (8%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGL 67
RT GL+++ E D AL ++ G L++ + G + +
Sbjct: 38 HFELSLRTEATQGLVLWIG--KAAERADYMALAIV--DGHLQLSYDLGSQPVVLRSTVKV 93
Query: 68 NRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEE 127
N ++W + L V +E + G P + D + +GGL
Sbjct: 94 NTNRWLRIRAHREHREGSLQ--VG---NEAPVTGSSPLGATQL--DTDGALWLGGLQKLP 146
Query: 128 KLHGV-KYIIESFIGCIKDMVL 148
+ K F+GC++D+V+
Sbjct: 147 VGQALPKAYGTGFVGCLRDVVV 168
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein,
vitamin K-dependent protein, AXL/SKY/MER ligand, laminin
G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4
b.29.1.4 PDB: 2c5d_A*
Length = 422
Score = 78.7 bits (193), Expect = 1e-17
Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 10/140 (7%)
Query: 9 ISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLN 68
F FRT P G+L++ + L + G+L++ + + G +N
Sbjct: 65 AEFDFRTFDPEGILLFA---GGHQDSTWIVLALR--AGRLELQLRYNGVGRVTSSGPVIN 119
Query: 69 RDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEK 128
W + + L+ +V+ I + + +GG+ P +
Sbjct: 120 HGMWQ--TISVEELARNLVIKVNRDAVMKIAVA--GDLFQPERGLYHLNLTVGGI-PFHE 174
Query: 129 LHGVKYIIESFIGCIKDMVL 148
V+ I GC++
Sbjct: 175 KDLVQPINPRLDGCMRSWNW 194
Score = 61.4 bits (148), Expect = 1e-11
Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 9/145 (6%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPE-GLDPYALYVIVEKG-QLKVVHVFGKHSTSITVGE 65
E+ R G+L D L + K + ++V + +H+ +
Sbjct: 252 EVVAHIRPAADTGVLFALWAPDLRAVPLSVALVDYHSTKKLKKQLVVLAVEHTALALMEI 311
Query: 66 GLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTS---VVLIGG 122
+ + H V V + A L VD ++ + V + GG
Sbjct: 312 KVCDGQEHVVTVSLRDGEATL--EVDGTRGQSEVSAAQLQERLAVLERHLRSPVLTFAGG 369
Query: 123 LSPEEKLHGVKYIIESFIGCIKDMV 147
L P+ + + GC+ V
Sbjct: 370 L-PDVPVTSAPV-TAFYRGCMTLEV 392
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4
PDB: 1pz8_A 1pz9_A 1q56_A
Length = 204
Score = 76.1 bits (187), Expect = 1e-17
Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 12/142 (8%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGL 67
+T GL+++ E D AL ++ G +++++ G + +
Sbjct: 51 HFELSIKTEATQGLILWSG--KGLERSDYIALAIV--DGFVQMMYDLGSKPVVLRSTVPI 106
Query: 68 NRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEE 127
N + W + L V +E I G P + D + +GG+
Sbjct: 107 NTNHWTHIKAYRVQREGSLQ--VG---NEAPITGSSPLGATQL--DTDGALWLGGMERLS 159
Query: 128 KLHGVKYII-ESFIGCIKDMVL 148
H + FIGCI+D+++
Sbjct: 160 VAHKLPKAYSTGFIGCIRDVIV 181
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Length = 184
Score = 64.5 bits (157), Expect = 2e-13
Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 18/144 (12%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFG---KHSTSITVG 64
EI+ F+T +GL+++ + D L + G + +V G + V
Sbjct: 31 EITLSFKTLQRNGLMLHTG-----KSADYVNLALK--NGAVSLVINLGSGAFEALVEPVN 83
Query: 65 EGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLS 124
N + WH V++ + ++ VD G + +GG
Sbjct: 84 GKFNDNAWHD--VKVTRNLRQVTISVD---GILTTTGYTQEDYTML--GSDDFFYVGGSP 136
Query: 125 PEEKLHGVKYIIESFIGCIKDMVL 148
L G +F+GC+K++V
Sbjct: 137 STADLPGSPV-SNNFMGCLKEVVY 159
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium,
cell adhesion, EGF-like domain, glycoprotein, membrane,
metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C*
2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Length = 178
Score = 61.8 bits (150), Expect = 1e-12
Identities = 25/142 (17%), Positives = 45/142 (31%), Gaps = 21/142 (14%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSI-TVGEG 66
++ F T +LV V D L+ + +G++ V G +I
Sbjct: 32 RLAIGFSTVQKEAVLVR--VDSSSGLGDYLELH--IHQGKIGVKFNVGTDDIAIEESNAI 87
Query: 67 LNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPE 126
+N K+H VR G +VD+ P + + ++IGG
Sbjct: 88 INDGKYHV--VRFTRSGGNATLQVDSWPVIERY----PAGRQLTIFNSQATIIIGGKEQG 141
Query: 127 EKLHGVKYIIESFIGCIKDMVL 148
+ F G + +
Sbjct: 142 ----------QPFQGQLSGLYY 153
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB:
3biw_E*
Length = 226
Score = 61.6 bits (149), Expect = 4e-12
Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 21/142 (14%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSI-TVGEG 66
++ F T +LV D GL Y L + + +G++ V G +I
Sbjct: 66 RLAIGFSTVQKEAVLVRV---DSSSGLGDY-LELHIHQGKIGVKFNVGTDDIAIEESNAI 121
Query: 67 LNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPE 126
+N K+H V + A L VD+ +I+ + + + ++IGG
Sbjct: 122 INDGKYHVVRFTRSGGNATLQ--VDS---WPVIERYPAGRQLTIF-NSQATIIIGGKEQG 175
Query: 127 EKLHGVKYIIESFIGCIKDMVL 148
+ F G + +
Sbjct: 176 ----------QPFQGQLSGLYY 187
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.8 bits (147), Expect = 2e-11
Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 54/174 (31%)
Query: 24 YHS--VKDRP-EGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLN-------RDKWH 73
+ + RP + AL+ V +G ++V +FG G+G RD +
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG--------GQGNTDDYFEELRDLYQ 178
Query: 74 S--VMVR--INVHGAKLIARVDNRTDETII--KGLD-----------PNTNYGVTSDLTS 116
+ V+V I L + D + +GL+ P+ +Y + S S
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY-LLSIPIS 237
Query: 117 VVLIG--------------GLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASD 156
LIG G +P E ++ ++ G + +V + A +D
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGE----LRSYLKGATGHSQGLVTAVAIAETD 287
Score = 33.9 bits (77), Expect = 0.025
Identities = 37/201 (18%), Positives = 59/201 (29%), Gaps = 87/201 (43%)
Query: 31 PEG-LD------P------YALY-VIVEKGQLKVVHVF-GKHSTSITVGE--------GL 67
+G L P A + + KG + F G HS +GE
Sbjct: 1722 EKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG-HS----LGEYAALASLAD- 1775
Query: 68 NRDKWHSVM-----VRINVH--GAKLIARVDNRTDETIIKGLDPNTNYGVTS-DLTSVVL 119
VM V + V G + R DE +NYG+ + + V
Sbjct: 1776 -------VMSIESLVEV-VFYRG-MTMQVAVPR-DEL------GRSNYGMIAINPGRVAA 1819
Query: 120 IGGLSPEEKLHGVKYIIESFIGCIKDMVLS-------------AGK-----AASDLL--- 158
+E L +Y++E +G ++ AG +++L
Sbjct: 1820 SFS---QEAL---QYVVER-VGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFI 1872
Query: 159 -----PIKPLIATKH-EHVEE 173
I L + E VE
Sbjct: 1873 KLQKIDIIELQKSLSLEEVEG 1893
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E*
3mw3_A*
Length = 220
Score = 57.8 bits (139), Expect = 9e-11
Identities = 27/185 (14%), Positives = 53/185 (28%), Gaps = 24/185 (12%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSI-TVGEG 66
++ F T +LV V D L+ + +G++ V G +I
Sbjct: 38 RLAIGFSTVQKEAVLVR--VDSSSGLGDYLELH--IHQGKIGVKFNVGTDDIAIEESNAI 93
Query: 67 LNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGL--- 123
+N K+H VR G +VD+ + + + +G +
Sbjct: 94 INDGKYHV--VRFTRSGGNATLQVDSWPVIERYPAGNNDNERLAIARQRIPYRLGRVVDE 151
Query: 124 -------------SPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEH 170
S + G K + F G + + + G ++ +
Sbjct: 152 WLLDKGRQLTIFNSQATIIIGGKEQGQPFQGQLSGLYYN-GLKVLNMAAENDANIAIVGN 210
Query: 171 VEEGC 175
V
Sbjct: 211 VRLVG 215
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 31.3 bits (71), Expect = 0.062
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 58 STSITV---------GEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNY 108
+I + + + ++++V + N+ + T ++ GL PNT Y
Sbjct: 22 HDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLY 81
Query: 109 GVT 111
+
Sbjct: 82 EFS 84
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 30.2 bits (68), Expect = 0.17
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 9/60 (15%)
Query: 58 STSITV---------GEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNY 108
++ V + + + ++V R + + D + GL PNT Y
Sbjct: 32 HDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTSLSYTATGLKPNTMY 91
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 30.9 bits (70), Expect = 0.20
Identities = 9/67 (13%), Positives = 19/67 (28%), Gaps = 10/67 (14%)
Query: 51 VHVFGKHSTSITV------GEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDP 104
+ S I G+ + + V I +D++ + L P
Sbjct: 12 PNAKAAGSRKIHFNWLPPSGKPMG----YRVKYWIQGDSESEAHLLDSKVPSVELTNLYP 67
Query: 105 NTNYGVT 111
+Y +
Sbjct: 68 YCDYEMK 74
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein
structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA
family oxidoreductase; 2.65A {Vibrio cholerae} SCOP:
c.2.1.3 d.81.1.5
Length = 323
Score = 30.5 bits (69), Expect = 0.25
Identities = 9/112 (8%), Positives = 32/112 (28%), Gaps = 11/112 (9%)
Query: 33 GLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGLNRDKWHSVMVRINVHGAKLIARVDN 92
+ L++ + + + + T T+ ++ + + D+
Sbjct: 180 QCNLDDLHLTYHMSEGLLARLDVQWQTGDTLLHASMNRQFGITTEHVTASYDNVAYLFDS 239
Query: 93 RTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIESFIGCIK 144
T + + + S V + +P G +++ ++
Sbjct: 240 FTQGKMWRD-----------NQESRVALKDWTPMLASKGFDAMVQDWLQVAA 280
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 29.6 bits (67), Expect = 0.31
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 80 NVHGAKLIARVDNRTDETIIKGLDPNTNYGVT 111
G ++ + + GL+ T Y V
Sbjct: 64 EDRGRHVVDGISREHSSWDLVGLEKWTEYRVW 95
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 28.9 bits (65), Expect = 0.33
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 83 GAKLIARVDNRTDETIIKGLDPNTNYGVT 111
V+ +I L P T+Y +
Sbjct: 53 SDYKRDVVEGSKQWHMIGHLQPETSYDIK 81
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 29.3 bits (66), Expect = 0.33
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 78 RINVHGAKLIARVDNRTDETIIKGLDPNTNYGVT 111
R H K I ++ GL+P ++Y +
Sbjct: 63 RNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLN 96
>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding
protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A
1z78_A
Length = 209
Score = 30.1 bits (67), Expect = 0.35
Identities = 15/107 (14%), Positives = 31/107 (28%), Gaps = 12/107 (11%)
Query: 55 GKHSTSITVGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDL 114
GK L +W S+ + V + +D E + + +
Sbjct: 112 GKQHVVSVEEALLATGQWKSITLF--VQEDRAQLYIDCEKMENAELDVPIQSVFTRDLAS 169
Query: 115 TSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIK 161
+ + I + F G ++++ G D+L K
Sbjct: 170 IARLRIAKGGVNDN----------FQGVLQNVRFVFGTTPEDILRNK 206
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 29.0 bits (65), Expect = 0.40
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 83 GAKLIARVDNRTDETIIKGLDPNTNYGVT 111
V+ I L P T+Y +
Sbjct: 57 SDYKKDMVEGDRYWHSISHLQPETSYDIK 85
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 29.0 bits (65), Expect = 0.51
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 89 RVDNRTDETIIKGLDPNTNYGVT 111
+VD + I+ LDP+++Y +T
Sbjct: 75 KVDYKQRYYTIENLDPSSHYVIT 97
>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET:
SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A
2ouj_A
Length = 251
Score = 29.4 bits (65), Expect = 0.56
Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 12/104 (11%)
Query: 55 GKHSTSITVGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDL 114
GK L +W S+ + V + +D E + + +
Sbjct: 122 GKQHVVSVEEALLATGQWKSITLF--VQEDRAQLYIDCEKMENAELDVPIQSVFTRDLAS 179
Query: 115 TSVVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLL 158
+ + I + F G ++++ G D+L
Sbjct: 180 IARLRIAKGGVNDN----------FQGVLQNVRFVFGTTPEDIL 213
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 28.2 bits (63), Expect = 0.72
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 78 RINVHGAKLIARVDNRTDETIIKGLDPNTNYGVT 111
N ++ + N T E + GL T Y +
Sbjct: 57 EYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIE 90
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 27.8 bits (62), Expect = 0.81
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 89 RVDNRTDETIIKGLDPNTNYGVT 111
V I GL P +Y +T
Sbjct: 58 TVPGYYSTATISGLKPGVDYTIT 80
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 27.7 bits (62), Expect = 0.92
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 89 RVDNRTDETIIKGLDPNTNYGVT 111
V + I GL P +Y +T
Sbjct: 52 TVPGSSSTATISGLSPGVDYTIT 74
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 27.8 bits (62), Expect = 0.97
Identities = 5/23 (21%), Positives = 6/23 (26%)
Query: 89 RVDNRTDETIIKGLDPNTNYGVT 111
V + L T Y V
Sbjct: 55 SVPGARSHVTLPDLQAATKYRVL 77
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A
{Mason-pfizer monkey virus} PDB: 1nso_A
Length = 114
Score = 27.8 bits (62), Expect = 1.1
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 76 MVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEK 128
+ + + ++ D TIIK D N+ +T LT++ IG + ++
Sbjct: 11 SLTLWLDDKMFTGLINTGADVTIIKLEDWPPNWPITDTLTNLRGIGQSNNPKQ 63
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 27.8 bits (62), Expect = 1.1
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 83 GAKLIARVDNRTDETIIKGLDPNTNYGVT 111
L A + + L +TNY T
Sbjct: 47 APPLQAETPGSAVDYPLHDLVLHTNYTAT 75
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 27.5 bits (61), Expect = 1.3
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 19/73 (26%)
Query: 48 LKVVHVFGKHSTSITVGEGLNRDKWHSV------MVRI---NVHGAKLIARVDNRTDETI 98
L + V ++ + W +VR + G + V E +
Sbjct: 15 LTLAAV---TPRTVHL-------TWQPSAGATHYLVRCSPASPKGEEEEREVQVGRPEVL 64
Query: 99 IKGLDPNTNYGVT 111
+ GL+P +Y V+
Sbjct: 65 LDGLEPGRDYEVS 77
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 28.2 bits (63), Expect = 1.4
Identities = 13/63 (20%), Positives = 16/63 (25%), Gaps = 16/63 (25%)
Query: 58 STSITVGEGLNRDKWHS---------VMVRINVHGAKLIARVDNRTDETIIKGLDPNTNY 108
S TV W V G + VD T + L P +Y
Sbjct: 108 ENSATV-------SWTPPRSRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDY 160
Query: 109 GVT 111
V
Sbjct: 161 NVN 163
Score = 27.0 bits (60), Expect = 2.9
Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 15/69 (21%)
Query: 51 VHVFGKHSTSITVGEGLNRDKWHSVMVRI--------NVHGAKLIARVDNRTDETIIKGL 102
+ V T++++ +W + + + G K + + I++GL
Sbjct: 13 LEVSDPTETTLSL-------RWRRPVAKFDRYRLTYVSPSGKKNEMEIPVDSTSFILRGL 65
Query: 103 DPNTNYGVT 111
D T Y ++
Sbjct: 66 DAGTEYTIS 74
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 27.4 bits (61), Expect = 1.5
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 89 RVDNRTDETIIKGLDPNTNYGVT 111
RVD++ I+ L+ +++Y ++
Sbjct: 65 RVDSKQRYYSIERLESSSHYVIS 87
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 27.2 bits (60), Expect = 1.5
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 89 RVDNRTDETIIKGLDPNTNYGVT 111
V I GL P +Y +T
Sbjct: 51 TVPGPVHTATISGLKPGVDYTIT 73
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 27.3 bits (61), Expect = 1.6
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 90 VDNRTDETIIKGLDPNTNYGVT 111
V +I+GLD T Y
Sbjct: 72 VSGTQLSQLIEGLDRGTEYNFR 93
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 27.0 bits (60), Expect = 1.8
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 89 RVDNRTDETIIKGLDPNTNYGVT 111
V + I GL P +Y +T
Sbjct: 54 TVPYSSSTATISGLSPGVDYTIT 76
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 26.6 bits (59), Expect = 1.9
Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 20/74 (27%)
Query: 48 LKVVHVFGKHSTSITVGEGLNRDKWHSVMVRI----------NVHGAKLIARVDNRTDET 97
L V SI + W S ++ +L D D
Sbjct: 8 LAFTDV---DVDSIKI-------AWESPQGQVSRYRVTYSSPEDGIHELFPAPDGEEDTA 57
Query: 98 IIKGLDPNTNYGVT 111
++GL P + Y V+
Sbjct: 58 ELQGLRPGSEYTVS 71
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 27.0 bits (60), Expect = 2.0
Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 19/74 (25%)
Query: 50 VVHVFGKHSTSITVGEGLNRDKWH------------SVMVRINVHGAKLIARVDNRTDET 97
++H SIT+ W + H + ++T+
Sbjct: 13 IMHQVSATMRSITL-------SWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTA 65
Query: 98 IIKGLDPNTNYGVT 111
I GL P Y V
Sbjct: 66 RIDGLRPGMVYVVQ 79
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 27.2 bits (60), Expect = 2.0
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 89 RVDNRTDETIIKGLDPNTNYGVT 111
V I GL P +Y +T
Sbjct: 76 TVPGSKSTATISGLKPGVDYTIT 98
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 2.0
Identities = 29/176 (16%), Positives = 46/176 (26%), Gaps = 49/176 (27%)
Query: 11 FQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHS-TSITVGEGLNR 69
+ LLV +V++ K + F +T R
Sbjct: 237 LLKSKPYENCLLVLLNVQNA------------------KAWNAFNLSCKILLT-----TR 273
Query: 70 DKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVL---IGGLSPE 126
K V ++ I+ + L P+ L L L P
Sbjct: 274 FK--QVTDFLSAATTTHISLDHHS------MTLTPDE----VKSLLLKYLDCRPQDL-PR 320
Query: 127 EKLHGVKYIIESFIG-CIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGCIDKKSP 181
E L + S I I+D A D K + K + E ++ P
Sbjct: 321 EVLTTNPRRL-SIIAESIRDG-----LATWD--NWKHVNCDKLTTIIESSLNVLEP 368
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 26.9 bits (60), Expect = 2.1
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 19/73 (26%)
Query: 51 VHVFGKHSTSITVGEGLNRDKW----------HSVMVRINVHGAKLIARVDNRTDET--I 98
V V S+ I+V W + + + RV + E
Sbjct: 25 VGVKVLSSSEISV-------HWEHVLEKIVESYQIRYWAAHDKEEAANRVQVTSQEYSAR 77
Query: 99 IKGLDPNTNYGVT 111
++ L P+T Y +
Sbjct: 78 LENLLPDTQYFIE 90
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 27.0 bits (60), Expect = 2.1
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 90 VDNRTDETIIKGLDPNTNYGVT 111
++ L +T Y V
Sbjct: 55 APGNATSAMLGPLSSSTTYTVR 76
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 26.9 bits (60), Expect = 2.3
Identities = 3/23 (13%), Positives = 8/23 (34%)
Query: 89 RVDNRTDETIIKGLDPNTNYGVT 111
++ + GL+ + Y
Sbjct: 79 TLEPNNLWYLFTGLEKGSQYSFQ 101
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 26.5 bits (59), Expect = 2.5
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 18/70 (25%)
Query: 51 VHVFGKHSTSITVGEGLNRDKWH----------SVMVRINVHGAKLIARVDNRTDETIIK 100
+ TSI + W ++ + HG + ++ T ++
Sbjct: 24 FKAEPESETSILL-------SWTPPRSDTIANYELVYKDGEHGEEQRITIEPGT-SYRLQ 75
Query: 101 GLDPNTNYGV 110
GL PN+ Y
Sbjct: 76 GLKPNSLYYF 85
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 26.7 bits (59), Expect = 2.6
Identities = 5/27 (18%), Positives = 7/27 (25%)
Query: 85 KLIARVDNRTDETIIKGLDPNTNYGVT 111
+L+ V I N V
Sbjct: 69 ELLEEVGQNGSRARISVQVHNATCTVR 95
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 26.6 bits (59), Expect = 2.6
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 89 RVDNRTDETIIKGLDPNTNYGVT 111
+ ++ + L YGV
Sbjct: 72 KATGDSEVYTLDNLKKFAQYGVV 94
>2aya_A DNA polymerase III subunit TAU; KH-fold, C-terminus of polymerase
III TAU subunit, transferase; HET: DNA; NMR {Escherichia
coli}
Length = 128
Score = 26.7 bits (59), Expect = 2.7
Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 62 TVGEGLNRDKWHSVMVRINVHG-AKLIAR--VDNRTDETIIKGLDPN 105
E + RD W + + ++++ + +A +D + L +
Sbjct: 16 LAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSS 62
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain;
structural genomics, center for structural genomics of
infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium
difficile}
Length = 308
Score = 27.3 bits (61), Expect = 2.7
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 11/68 (16%)
Query: 78 RINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYIIE 137
++ + I RV N I +G + G K G + I
Sbjct: 226 QVEILSKGKIQRVKNLNVLEIEEGGNLTLKQ-----------SGAWVNILKQKGFEDISN 274
Query: 138 SFIGCIKD 145
FI CI++
Sbjct: 275 HFIDCIEN 282
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 27.1 bits (60), Expect = 2.8
Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
Query: 51 VHVFGKHSTSITV---------GEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKG 101
V +I + + + ++++V + N+ + T ++ G
Sbjct: 11 VQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTG 70
Query: 102 LDPNTNYGVT 111
L PNT Y +
Sbjct: 71 LKPNTLYEFS 80
Score = 25.9 bits (57), Expect = 7.9
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 83 GAKLIARVDNRTDETIIKGLDPNTNYGVT 111
+I V I+ L +T Y
Sbjct: 154 HDWVIEPVVGNRLTHQIQELTLDTPYYFK 182
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 27.4 bits (60), Expect = 3.0
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 12/72 (16%)
Query: 51 VHVFGKHSTSITVG-EGLNRDKWHSVMVRINVH-----------GAKLIARVDNRTDETI 98
+ V S IT+ E + + VH ++ +N +
Sbjct: 366 LEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHT 425
Query: 99 IKGLDPNTNYGV 110
I L P TN V
Sbjct: 426 ITNLSPYTNVSV 437
Score = 27.0 bits (59), Expect = 4.7
Identities = 8/41 (19%), Positives = 11/41 (26%)
Query: 71 KWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVT 111
S I++ + GL P T Y T
Sbjct: 502 AVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFT 542
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 26.1 bits (58), Expect = 3.4
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 89 RVDNRTDETIIKGLDPNTNYGV 110
VD + I GL T Y
Sbjct: 65 DVDVSSHSYTINGLKKYTEYSF 86
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 26.2 bits (58), Expect = 3.7
Identities = 9/72 (12%), Positives = 18/72 (25%), Gaps = 19/72 (26%)
Query: 51 VHVFGKHSTSITVGEGLNRDKWH------------SVMVRINVHGAKLIARVDNRTDETI 98
+ TS+++ W + + + + T
Sbjct: 17 IRQERAGQTSVSL-------LWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRAT 69
Query: 99 IKGLDPNTNYGV 110
+ GL P T Y
Sbjct: 70 VSGLKPGTRYVF 81
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 26.2 bits (58), Expect = 3.8
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 89 RVDNRTDETIIKGLDPNTNYGV 110
+ I L+ +T Y
Sbjct: 63 TISGDRLTHQIMDLNLDTMYYF 84
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 26.3 bits (58), Expect = 3.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 77 VRINVHGAKLIARVDNRTDETIIKGLDPNTNYGV 110
V + G+K+ A ++ T IK L NT Y V
Sbjct: 45 VEYSRSGSKMWASQRAASNFTEIKNLLVNTLYTV 78
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 26.1 bits (58), Expect = 3.9
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 90 VDNRTDET--IIKGLDPNTNYGVT 111
+ N T +T + GL P+T Y +
Sbjct: 57 LQNITTDTRFTLTGLKPDTTYDIK 80
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 25.7 bits (57), Expect = 4.4
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 90 VDNRTDETIIKGLDPNTNYGVT 111
++ ++GL T Y +
Sbjct: 56 IEVDGLSYKLEGLKKFTEYSLR 77
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma
virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Length = 124
Score = 26.1 bits (57), Expect = 4.5
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 72 WHSVMVRINVHGAKLIARVDNRTDETIIKGLD-PNTNYGVTSDLTSVVLIGGLSP 125
++ + + A +D+ D TII D P + + + IGG P
Sbjct: 18 TNTGSHPVKQRSVYITALLDSGADITIISEEDWPTDWPVMEAANPQIHGIGGGIP 72
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 25.5 bits (56), Expect = 4.6
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 89 RVDNRTDETIIKGLDPNTNYGVT 111
+ + I L P Y V
Sbjct: 53 DLPSTATSVNIPDLLPGRKYIVN 75
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 26.3 bits (58), Expect = 5.3
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 89 RVDNRTDETIIKGLDPNTNYGVT 111
+ + ++ L P T Y V+
Sbjct: 162 SISPSDNAVVLTNLLPGTEYVVS 184
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 25.8 bits (57), Expect = 5.4
Identities = 7/30 (23%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 82 HGAKLIARVDNRTDETIIKGLDPNTNYGVT 111
+ V + T I L P Y V
Sbjct: 64 VNNWMKHNVADSQ-ITTIGNLVPQKTYSVK 92
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 25.5 bits (56), Expect = 5.4
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 80 NVHGAKLIARVDNRTDETIIKGLDPNTNYGVT 111
G + + + ++GL +Y V
Sbjct: 49 GAEGPSSVRFLKTSENRAELRGLKRGASYLVQ 80
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 25.4 bits (56), Expect = 5.5
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 9/41 (21%)
Query: 68 NRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNY 108
+ WHS + I + GL P T Y
Sbjct: 48 GEEVWHSKWYDAKEASMEGIVTI---------VGLKPETTY 79
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 26.3 bits (58), Expect = 5.5
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 87 IARVDNRTDETIIKGLDPNTNYGVT 111
+ + T +T + L P T YGV
Sbjct: 152 VPKGIGPTTKTTLTDLVPGTEYGVG 176
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 25.5 bits (56), Expect = 5.6
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 89 RVDNRTDETIIKGLDPNTNYGVT 111
V + I GL P Y V+
Sbjct: 49 TVPPSSTSVTITGLTPGVEYVVS 71
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural
genomics, NYSGXRC, PSI, protein structure initiative;
2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Length = 319
Score = 26.5 bits (59), Expect = 5.9
Identities = 7/70 (10%), Positives = 17/70 (24%), Gaps = 11/70 (15%)
Query: 76 MVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEEKLHGVKYI 135
+ + + + + +G I G + G
Sbjct: 223 RETVQAVTDGALIDITDMREWREERG-----------QGVVHKPIPGWQSTLEQRGFVGC 271
Query: 136 IESFIGCIKD 145
FI C+++
Sbjct: 272 ARHFIECVQN 281
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 26.3 bits (58), Expect = 5.9
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 90 VDNRTDETIIKGLDPNTNYGVT 111
VD+ + GL+P +Y ++
Sbjct: 145 VDSSVGYYTVTGLEPGIDYDIS 166
Score = 26.3 bits (58), Expect = 7.6
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 76 MVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVT 111
+ G RV + + + L P T Y V+
Sbjct: 312 HHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVS 347
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 26.3 bits (58), Expect = 6.9
Identities = 6/65 (9%), Positives = 18/65 (27%), Gaps = 4/65 (6%)
Query: 51 VHVFGKHSTSITV----GEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNT 106
+ ++ V ++ + + + + ++ L P T
Sbjct: 101 LRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGT 160
Query: 107 NYGVT 111
Y V+
Sbjct: 161 EYVVS 165
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 25.9 bits (56), Expect = 7.1
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 76 MVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVT 111
V+ G ++ + D +++ L+P T Y V
Sbjct: 136 NVQYWKQGTDEKFQITPQYDFEVLRNLEPWTTYCVQ 171
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 25.9 bits (57), Expect = 8.1
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 85 KLIARVDNRTDETIIKGLDPNTNYGVT 111
+++ R E I GL+P T Y +
Sbjct: 245 EVVPRPRPGVTEATITGLEPGTEYTIY 271
Score = 25.9 bits (57), Expect = 8.3
Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 16/70 (22%)
Query: 51 VHVFGKHSTSITVGEGLNRDKWHS---------VMVRINVHGAKLIARVDNRTDETIIKG 101
V T+IT+ W + V + + I G
Sbjct: 119 ARVTDATETTITIS-------WRTKTETITGFQVDAVPANGQTPIQRTIKPDVRSYTITG 171
Query: 102 LDPNTNYGVT 111
L P T+Y +
Sbjct: 172 LQPGTDYKIY 181
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 24.7 bits (54), Expect = 9.0
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 89 RVDNRTDETIIKGLDPNTNYGVT 111
V + GL P T Y V+
Sbjct: 49 TVPGSERSYDLTGLKPGTEYTVS 71
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.413
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,841,518
Number of extensions: 169103
Number of successful extensions: 486
Number of sequences better than 10.0: 1
Number of HSP's gapped: 423
Number of HSP's successfully gapped: 96
Length of query: 186
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,244,745
Effective search space: 415985010
Effective search space used: 415985010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)