RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1323
(186 letters)
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 189
Score = 70.6 bits (172), Expect = 4e-16
Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 13/142 (9%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGL 67
I + RT GLL Y + + D + + G + G TS + +
Sbjct: 41 TIELEVRTEAESGLLFYMARINHA---DFATVQLR--NGFPYFSYDLGSGDTSTMIPTKI 95
Query: 68 NRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEE 127
N +WH + + L VD+ + +TI + D+ ++ +GGL
Sbjct: 96 NDGQWHKIKIVRVKQEGIL--YVDDASSQTI------SPKKADILDVVGILYVGGLPINY 147
Query: 128 KLHGVKYIIESFIGCIKDMVLS 149
+ + S GC++++ +
Sbjct: 148 TTRRIGPVTYSLDGCVRNLHME 169
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6
{Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 69.5 bits (169), Expect = 1e-15
Identities = 24/148 (16%), Positives = 54/148 (36%), Gaps = 14/148 (9%)
Query: 1 MSFRLCR----EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGK 56
+ F+ + F FRT P G+L++ + + + G+L++ +
Sbjct: 49 LRFKRLQPTRLVAEFDFRTFDPEGILLFAGGHQDST-----WIVLALRAGRLELQLRYNG 103
Query: 57 HSTSITVGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTS 116
+ G +N W ++ V L+ +V+ D + + +
Sbjct: 104 VGRVTSSGPVINHGMWQTISVEEL--ARNLVIKVNR--DAVMKIAVAGDLFQPERGLYHL 159
Query: 117 VVLIGGLSPEEKLHGVKYIIESFIGCIK 144
+ +GG+ P + V+ I GC++
Sbjct: 160 NLTVGGI-PFHEKDLVQPINPRLDGCMR 186
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 185
Score = 66.4 bits (161), Expect = 1e-14
Identities = 27/179 (15%), Positives = 54/179 (30%), Gaps = 19/179 (10%)
Query: 1 MSFRLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKH--- 57
L + F+FRT P G+L+ S + + + + +L G
Sbjct: 20 FKVGLDLLVEFEFRTTRPTGVLLGVSSQKMD------GMGIEMIDEKLMFHVDNGAGRFT 73
Query: 58 -STSITVGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTS 116
+ + +WH V + + +L+ + ++ +D
Sbjct: 74 AIYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSASTS-------ADTND 126
Query: 117 VVLIGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLLPIKPLIATKHEHVEEGC 175
V +GG G+ F GCI+ + L+ G + + C
Sbjct: 127 PVFVGGFPGGLNQFGLT-TNIRFRGCIRSLKLTKGTGKPLEVNFAKALEL-RGVQPVSC 183
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 170
Score = 65.2 bits (158), Expect = 3e-14
Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 21/149 (14%)
Query: 1 MSFRLCRE----ISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGK 56
M+F L + SF+ RT P G++ Y + D + L + G+ ++
Sbjct: 18 MTFDLTKITKTSSSFEVRTWDPEGVIFYGDTNPKD---DWFMLGLR--DGRPEIQLHNHW 72
Query: 57 HSTSITVGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTS 116
++ G L+ +WH V V++ L VD + + V+
Sbjct: 73 AQLTVGAGPRLDDGRWHQVEVKMEGDSVLL--EVDGEEVLRLRQ---------VSGHPIM 121
Query: 117 VVLIGGLSPEEKLHGVKYIIESFIGCIKD 145
+ +GGL + ++ + GC++
Sbjct: 122 RIALGGL-LFPASNLRLPLVPALDGCLRR 149
>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 195
Score = 59.6 bits (143), Expect = 5e-12
Identities = 29/150 (19%), Positives = 54/150 (36%), Gaps = 12/150 (8%)
Query: 1 MSFRLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTS 60
+T GL+++ E D AL ++ G +++++ G
Sbjct: 38 EKALQSNHFELSIKTEATQGLILWSG--KGLERSDYIALAIV--DGFVQMMYDLGSKPVV 93
Query: 61 ITVGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLI 120
+ +N + W + L +V N E I G P + D + +
Sbjct: 94 LRSTVPINTNHWTHIKAYRVQREGSL--QVGN---EAPITGSSPLGATQL--DTDGALWL 146
Query: 121 GGLSPEEKLHGV-KYIIESFIGCIKDMVLS 149
GG+ H + K FIGCI+D+++
Sbjct: 147 GGMERLSVAHKLPKAYSTGFIGCIRDVIVD 176
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 177
Score = 55.6 bits (133), Expect = 1e-10
Identities = 25/141 (17%), Positives = 45/141 (31%), Gaps = 19/141 (13%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEGL 67
++ F T +LV D GL Y L + + +G++ V G +I +
Sbjct: 31 RLAIGFSTVQKEAVLVRV---DSSSGLGDY-LELHIHQGKIGVKFNVGTDDIAIEESNAI 86
Query: 68 NRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGGLSPEE 127
D +VR G +VD+ P + + ++IGG
Sbjct: 87 IND-GKYHVVRFTRSGGNATLQVDSWPVIERY----PAGRQLTIFNSQATIIIGGKEQG- 140
Query: 128 KLHGVKYIIESFIGCIKDMVL 148
+ F G + +
Sbjct: 141 ---------QPFQGQLSGLYY 152
>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6
{Human (Homo sapiens) [TaxId: 9606]}
Length = 218
Score = 52.6 bits (125), Expect = 2e-09
Identities = 22/148 (14%), Positives = 37/148 (25%), Gaps = 15/148 (10%)
Query: 8 EISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVFGKHSTSITVGEG- 66
E+ R G+L D A+ + V K + V
Sbjct: 48 EVVAHIRPAADTGVLFALWAPDLR------AVPLSVALVDYHSTKKLKKQLVVLAVEHTA 101
Query: 67 -------LNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVL 119
+ + H V V + A L E L + V+
Sbjct: 102 LALMEIKVCDGQEHVVTVSLRDGEATLEVDGTRGQSEVSAAQLQERLAVLERHLRSPVLT 161
Query: 120 IGGLSPEEKLHGVKYIIESFIGCIKDMV 147
G P+ + + + GC+ V
Sbjct: 162 FAGGLPDVPVTS-APVTAFYRGCMTLEV 188
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 206
Score = 34.3 bits (78), Expect = 0.004
Identities = 20/159 (12%), Positives = 44/159 (27%), Gaps = 14/159 (8%)
Query: 2 SFRLCREISFQFRTRLPHGLLVYHSVKDRPEGLDPYALYVIVEKGQLKVVHVF--GKHST 59
+ R + R +R + V K + + GK
Sbjct: 54 AVRTEKGFLLLASLRQMKKTRGTLLALERKDHSGQVFSVVSNGKAGTLDLSLTVQGKQHV 113
Query: 60 SITVGEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVL 119
L +W S+ + + A+L +D E + + + + +
Sbjct: 114 VSVEEALLATGQWKSITLFVQEDRAQLY--IDCEKMENAELDVPIQSVFTRDLASIARLR 171
Query: 120 IGGLSPEEKLHGVKYIIESFIGCIKDMVLSAGKAASDLL 158
I ++F G ++++ G D+L
Sbjct: 172 IAKGGVN----------DNFQGVLQNVRFVFGTTPEDIL 200
>d1nsoa_ b.50.1.1 (A:) Mason-Pfizer monkey virus protease {Simian
retrovirus 1, SRV-1 [TaxId: 11942]}
Length = 107
Score = 27.4 bits (61), Expect = 0.42
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 76 MVRINVHGAKLIARVDNRTDETIIKGLDPNTNYGVTSDLTSVVLIGG 122
+ + + ++ D TIIK D N+ +T LT++ IG
Sbjct: 11 SLTLWLDDKMFTGLINTGADVTIIKLEDWPPNWPITDTLTNLRGIGQ 57
>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing
protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 25.0 bits (53), Expect = 3.5
Identities = 8/64 (12%), Positives = 19/64 (29%), Gaps = 6/64 (9%)
Query: 51 VHVFGKHSTSITV------GEGLNRDKWHSVMVRINVHGAKLIARVDNRTDETIIKGLDP 104
+ T +++ G + + + + G + D +K L
Sbjct: 7 PVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRR 66
Query: 105 NTNY 108
+T Y
Sbjct: 67 STKY 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.413
Gapped
Lambda K H
0.267 0.0484 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 684,199
Number of extensions: 30595
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 12
Length of query: 186
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,309,196
Effective search space: 138774776
Effective search space used: 138774776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.6 bits)