BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13230
(132 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CX56|PSMD8_MOUSE 26S proteasome non-ATPase regulatory subunit 8 OS=Mus musculus
GN=Psmd8 PE=1 SV=2
Length = 353
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 23/125 (18%)
Query: 18 RVPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM-------------------- 57
++PES Y +++LGLNLL+LLSQNRVAEFH ELER+ +D+
Sbjct: 184 QLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGS 243
Query: 58 ---IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMV 114
+FLAK +P+ Y F++ L+DT R+EIA CIEKAY I + + L + K+M
Sbjct: 244 YNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFAEATRILFFSTPKKMT 303
Query: 115 EFGKK 119
++ KK
Sbjct: 304 DYAKK 308
>sp|Q3SYT7|PSMD8_BOVIN 26S proteasome non-ATPase regulatory subunit 8 OS=Bos taurus
GN=PSMD8 PE=2 SV=3
Length = 287
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 23/125 (18%)
Query: 18 RVPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM-------------------- 57
++PES Y +++LGLNLL+LLSQNRVAEFH ELER+ +D+
Sbjct: 118 QLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGS 177
Query: 58 ---IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMV 114
+FLAK +P+ Y F++ L+DT R+EIA CIEKAY I + + L + K+M
Sbjct: 178 YNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMT 237
Query: 115 EFGKK 119
++ KK
Sbjct: 238 DYAKK 242
>sp|Q5RE15|PSMD8_PONAB 26S proteasome non-ATPase regulatory subunit 8 (Fragment) OS=Pongo
abelii GN=PSMD8 PE=2 SV=2
Length = 289
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 23/125 (18%)
Query: 18 RVPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM-------------------- 57
++PES Y +++LGLNLL+LLSQNRVAEFH ELER+ +D+
Sbjct: 120 QLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGS 179
Query: 58 ---IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMV 114
+FLAK +P+ Y F++ L+DT R+EIA CIEKAY I + + L + K+M
Sbjct: 180 YNKVFLAKGNIPAESYAFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMT 239
Query: 115 EFGKK 119
++ KK
Sbjct: 240 DYAKK 244
>sp|P48556|PSMD8_HUMAN 26S proteasome non-ATPase regulatory subunit 8 OS=Homo sapiens
GN=PSMD8 PE=1 SV=2
Length = 350
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 23/125 (18%)
Query: 18 RVPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM-------------------- 57
++PES Y +++LGLNLL+LLSQNRVAEFH ELER+ +D+
Sbjct: 181 QLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGS 240
Query: 58 ---IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMV 114
+FLAK +P+ Y F++ L+DT R+EIA CIEKAY I + + L + K+M
Sbjct: 241 YNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMT 300
Query: 115 EFGKK 119
++ KK
Sbjct: 301 DYAKK 305
>sp|Q9FHY0|RP12B_ARATH 26S proteasome non-ATPase regulatory subunit RPN12B OS=Arabidopsis
thaliana GN=RPN12B PE=2 SV=2
Length = 233
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 22/122 (18%)
Query: 17 SRVPESPYKNEMLGLNLLYLLSQNRVAEFHMEL--------------ERIQYE------- 55
+R+P SP +N ++GLNLL LL QNR+AEFH EL ++ E
Sbjct: 63 NRIPPSPQENLIMGLNLLRLLVQNRIAEFHTELGLLSSATLENPCIKHAVELEQSFMEGA 122
Query: 56 -DMIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMV 114
+ + A+ P Y FM+ L T R+EIA C EKAY +S+ + + L S++Q++
Sbjct: 123 YNRVLSARQTAPDETYVYFMDLLAKTIRDEIAGCSEKAYDHLSISEGCKMLLFSSDQQLL 182
Query: 115 EF 116
+
Sbjct: 183 TY 184
>sp|Q23449|PSMD8_CAEEL 26S proteasome non-ATPase regulatory subunit 8 OS=Caenorhabditis
elegans GN=rpn-12 PE=1 SV=1
Length = 250
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 24/130 (18%)
Query: 16 FSRVPE-SPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM----------------- 57
++ PE S K+ M GL+L++LL+ NR+++FHM LE+I ++
Sbjct: 79 YTMAPENSENKHLMTGLHLMFLLAANRLSDFHMLLEQIPQKEQTSNAYISTPVRIEQSLM 138
Query: 58 ------IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEK 111
+ L + +PSP Y F+ ++DT R EIA+ IEK++ V++ D L +++
Sbjct: 139 EGAYNKVVLTEKNIPSPFYTIFIRIMLDTIRREIATSIEKSFKVLTAKDATVMLLFDNDE 198
Query: 112 QMVEFGKKVK 121
QM +FG++ K
Sbjct: 199 QMKKFGQERK 208
>sp|Q9SGW3|RP12A_ARATH 26S proteasome non-ATPase regulatory subunit RPN12A OS=Arabidopsis
thaliana GN=RPN12A PE=1 SV=1
Length = 267
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 65/122 (53%), Gaps = 22/122 (18%)
Query: 17 SRVPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQ---YED----------------- 56
+R+P+SP +N +LGLNLL LL QNR+AEFH ELE + ED
Sbjct: 97 NRIPQSPQENLILGLNLLRLLVQNRIAEFHTELELLSSATLEDPCIKHAVELEQSFMEGA 156
Query: 57 --MIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMV 114
+ A+ P Y FM+ L T R+EIA C EKAY +S+ D Q L S+++++
Sbjct: 157 YNRVLSARQTAPDATYVYFMDLLAKTIRDEIAGCSEKAYDYVSISDARQMLLFSSDQELL 216
Query: 115 EF 116
+
Sbjct: 217 TY 218
>sp|P02889|PSMD8_DICDI Probable 26S proteasome non-ATPase regulatory subunit 8
OS=Dictyostelium discoideum GN=psmD8-1 PE=3 SV=2
Length = 263
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 61/115 (53%), Gaps = 22/115 (19%)
Query: 27 EMLGLNLLYLLSQNRVAEFHMELERIQYEDM----------------------IFLAKDG 64
+++GLNL+ LL++++ +EFH E+E I++ ++ I ++ G
Sbjct: 107 QIIGLNLMRLLAKHKTSEFHSEIELIEFNNLDNSFIKFPLLVEKSITEGSYNKIIQSRSG 166
Query: 65 VPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKK 119
VPS Y F++ L D+ + +IA+C EK++ +S+ D + L Q ++ K+
Sbjct: 167 VPSEYYQVFLDILADSIKEDIANCSEKSFKTLSLKDAEKVLLFNDNNQFQQYIKE 221
>sp|P50524|RPN12_SCHPO 26S proteasome regulatory subunit rpn12 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpn12 PE=1 SV=1
Length = 270
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 29/126 (23%)
Query: 30 GLNLLYLLSQNRVAEFHMELERIQ----------YEDMIFL-------AKDGVPS----- 67
GLNLLYLLS+NR+AEFH LE + E +I L A D V S
Sbjct: 96 GLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSC 155
Query: 68 --PRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHI----GSEKQMVEFGKKVK 121
P ++ FM+ ++ RNEIA+C EK Y+ I + + L++ +EK E G ++
Sbjct: 156 NFPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEERGWDIR 215
Query: 122 N-IVYF 126
+ ++YF
Sbjct: 216 DGVIYF 221
>sp|Q895K8|ISPT_CLOTE Isoprenyl transferase OS=Clostridium tetani (strain Massachusetts /
E88) GN=uppS PE=3 SV=1
Length = 255
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 66 PSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKKVKN 122
P NA ME L++ R E+A + V ++GD + KL E ++++ K KN
Sbjct: 87 PKEEINALMELLVNYLRKEVAELHQNNVVVNTIGDVS-KLPKACEDELMKAYNKTKN 142
>sp|Q754Z1|MAD1_ASHGO Spindle assembly checkpoint component MAD1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=MAD1 PE=3 SV=2
Length = 659
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 24 YKNEMLGLNLL-YLLSQNRVAEFH-MELERIQYEDMIFLAKDGVPSPRYNAFMETLIDTT 81
Y++ +L L L Y + Q ++ F +L R Q +D+ + KD P R ++TL+DT
Sbjct: 347 YESSILNLKKLNYEIEQQKLLSFEECKLLRQQLDDLSEVDKDHTPDTRDRKKIQTLVDTY 406
Query: 82 RNE 84
+N+
Sbjct: 407 KNQ 409
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,825,687
Number of Sequences: 539616
Number of extensions: 1593197
Number of successful extensions: 3868
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3846
Number of HSP's gapped (non-prelim): 21
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)