Query psy13230
Match_columns 132
No_of_seqs 117 out of 218
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 23:27:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13230.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13230hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_T 26S proteasome regulato 100.0 5.7E-33 2E-37 225.6 9.2 119 13-131 89-235 (274)
2 4b0z_A RPN12, 26S proteasome r 100.0 4E-31 1.4E-35 209.1 12.2 115 17-131 88-226 (229)
3 1rz4_A Eukaryotic translation 99.8 4.5E-21 1.6E-25 152.4 8.7 107 19-127 56-184 (226)
4 3t5v_A Nuclear mRNA export pro 98.9 4.6E-09 1.6E-13 86.8 9.2 104 20-126 110-255 (316)
5 1ufm_A COP9 complex subunit 4; 91.8 0.18 6.2E-06 33.8 3.8 42 77-119 12-53 (84)
6 3txn_A 26S proteasome regulato 89.8 1.9 6.4E-05 36.1 9.1 50 69-119 290-339 (394)
7 4b4t_S RPN3, 26S proteasome re 88.8 0.25 8.6E-06 43.3 3.1 73 38-119 353-425 (523)
8 4b4t_P 26S proteasome regulato 85.6 2 7E-05 35.8 6.8 47 72-119 336-382 (445)
9 2lju_A Putative oxidoreductase 83.7 0.49 1.7E-05 33.5 1.9 21 104-124 63-83 (108)
10 2jya_A AGR_C_3324P, uncharacte 81.9 0.58 2E-05 33.1 1.7 21 104-124 55-75 (106)
11 4b4t_R RPN7, 26S proteasome re 80.4 3.1 0.00011 34.3 5.9 49 69-118 321-369 (429)
12 4b4t_Q 26S proteasome regulato 79.8 12 0.00041 28.6 8.7 50 68-118 329-378 (434)
13 4b4t_O 26S proteasome regulato 77.9 7.5 0.00026 31.9 7.4 77 31-119 252-330 (393)
14 3t5x_A PCI domain-containing p 70.6 15 0.0005 27.6 6.9 75 32-119 85-170 (203)
15 3e21_A HFAF1, FAS-associated f 67.7 3.6 0.00012 24.6 2.3 30 98-127 9-38 (45)
16 1ng7_A Poliovirus 3A-N, genome 64.4 2.7 9.1E-05 26.9 1.3 24 102-125 23-46 (60)
17 3chm_A COP9 signalosome comple 60.9 47 0.0016 24.4 8.3 71 30-118 62-132 (169)
18 2heo_A Z-DNA binding protein 1 59.0 24 0.00081 21.7 5.2 45 79-124 9-56 (67)
19 1y6u_A XIS, excisionase from t 58.4 13 0.00045 23.6 3.9 37 94-131 15-55 (70)
20 2gmg_A Hypothetical protein PF 55.2 8 0.00027 27.2 2.6 32 79-112 10-43 (105)
21 1p4w_A RCSB; solution structur 51.2 8.8 0.0003 25.7 2.3 60 64-123 34-95 (99)
22 3c57_A Two component transcrip 46.2 2.1 7.2E-05 28.1 -1.5 25 99-123 64-88 (95)
23 2elj_A Transcriptional adapter 44.7 47 0.0016 21.9 5.1 63 52-122 23-87 (88)
24 3ulq_B Transcriptional regulat 43.7 8.2 0.00028 25.3 1.1 24 99-122 66-89 (90)
25 1x3u_A Transcriptional regulat 41.5 56 0.0019 19.6 5.2 68 43-123 8-77 (79)
26 1je8_A Nitrate/nitrite respons 40.2 20 0.00067 22.6 2.5 44 66-122 38-81 (82)
27 2jpc_A SSRB; DNA binding prote 39.8 28 0.00094 20.0 3.0 25 99-123 35-59 (61)
28 3p7n_A Sensor histidine kinase 37.6 52 0.0018 23.6 4.9 68 42-122 189-258 (258)
29 2lkp_A Transcriptional regulat 36.4 74 0.0025 20.6 5.1 53 69-124 21-76 (119)
30 2dam_A ETEA protein; KIAA0887, 32.2 22 0.00074 22.5 1.7 30 98-127 22-51 (67)
31 1fse_A GERE; helix-turn-helix 31.9 21 0.00073 21.1 1.6 23 100-122 49-71 (74)
32 2rnj_A Response regulator prot 31.1 12 0.00041 23.9 0.3 45 65-122 45-89 (91)
33 1y0u_A Arsenical resistance op 29.8 69 0.0023 20.2 4.0 53 68-124 19-74 (96)
34 3sol_A Type II secretion pathw 29.4 22 0.00075 24.4 1.4 16 112-127 38-53 (94)
35 3cuo_A Uncharacterized HTH-typ 29.2 1E+02 0.0035 18.9 4.7 55 68-124 12-69 (99)
36 2oqg_A Possible transcriptiona 28.3 1E+02 0.0035 19.5 4.7 53 69-124 10-65 (114)
37 2kvc_A Putative uncharacterize 28.2 44 0.0015 23.2 2.9 21 108-128 74-97 (103)
38 1jaj_A DNA polymerase beta-lik 28.2 31 0.0011 25.6 2.2 31 100-130 109-143 (174)
39 2jr5_A UPF0350 protein VC_2471 26.5 83 0.0029 21.0 4.0 47 37-83 36-83 (94)
40 1x6i_A Hypothetical protein YG 26.0 62 0.0021 21.5 3.3 47 37-83 38-85 (91)
41 3utk_A Lipoprotein OUTS; neste 25.4 28 0.00094 25.3 1.4 16 112-127 75-90 (133)
42 2pjp_A Selenocysteine-specific 24.4 1.6E+02 0.0055 19.6 6.7 52 73-126 59-113 (121)
43 3szt_A QCSR, quorum-sensing co 24.2 68 0.0023 23.8 3.5 25 99-123 212-236 (237)
44 1q1h_A TFE, transcription fact 24.1 51 0.0018 21.3 2.5 56 67-123 5-63 (110)
45 1r1t_A Transcriptional repress 24.0 1.7E+02 0.0056 19.6 5.3 53 69-124 35-90 (122)
46 1r1u_A CZRA, repressor protein 23.9 1.4E+02 0.0046 19.1 4.7 53 69-124 15-70 (106)
47 2htj_A P fimbrial regulatory p 23.9 1.2E+02 0.0041 18.5 4.2 41 82-124 2-45 (81)
48 1g4d_A Repressor protein C; pr 23.2 69 0.0024 20.3 2.9 29 96-124 5-34 (69)
49 1v92_A NSFL1 cofactor P47; 3-h 23.0 51 0.0018 18.4 2.1 29 98-127 9-37 (46)
50 3jth_A Transcription activator 22.6 1.2E+02 0.0042 18.8 4.2 54 68-124 11-67 (98)
51 4a56_A PULS, pullulanase secre 22.4 33 0.0011 23.4 1.3 15 112-126 38-52 (93)
52 2kci_A Putative acyl carrier p 22.4 1E+02 0.0035 19.9 3.8 34 84-120 41-75 (87)
53 2kjs_A Putative acyl carrier p 21.8 1.2E+02 0.0041 19.4 4.0 34 84-120 41-75 (87)
54 2cuj_A Transcriptional adaptor 21.3 1.7E+02 0.0057 20.1 4.8 64 51-123 40-105 (108)
55 2og0_A Excisionase; protein-DN 21.1 1E+02 0.0035 18.4 3.3 37 96-132 3-51 (52)
56 2aqe_A Transcriptional adaptor 21.0 1.8E+02 0.006 19.1 4.8 64 51-123 22-87 (90)
57 1nd9_A Translation initiation 20.9 71 0.0024 17.6 2.4 26 96-122 3-28 (49)
58 2lc0_A Putative uncharacterize 20.8 42 0.0014 23.9 1.6 33 95-127 65-103 (132)
59 1u2w_A CADC repressor, cadmium 20.6 1.9E+02 0.0065 19.0 6.2 55 68-124 30-87 (122)
60 3bvp_A INT, TP901-1 integrase; 20.2 63 0.0022 21.9 2.4 16 110-125 27-42 (138)
61 2oux_A Magnesium transporter; 20.1 1.8E+02 0.0061 22.1 5.3 83 33-116 15-104 (286)
No 1
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.7e-33 Score=225.64 Aligned_cols=119 Identities=24% Similarity=0.344 Sum_probs=106.8
Q ss_pred cccC-CCCCCCcCcchhhHHHHHHHhccCChhHHHHHHhhhchhh---h----------------------HHh--ccCC
Q psy13230 13 SLSF-SRVPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYED---M----------------------IFL--AKDG 64 (132)
Q Consensus 13 ~~~~-~~lp~S~~~~~ilgL~LL~LLsqnriaeFHteLE~l~~~~---~----------------------V~~--~~~~ 64 (132)
|+.+ +.+|+|+++++++|+||||||+|||++|||++||.||... . +|. .+.+
T Consensus 89 Y~d~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~ 168 (274)
T 4b4t_T 89 YFSNNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGS 168 (274)
T ss_dssp TTTTSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCT
T ss_pred HHhhhccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCC
Confidence 3443 4589999999999999999999999999999999999531 1 342 4667
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHhhcCCeeeceeeee
Q psy13230 65 VPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKKVKNIVYFYIFYI 131 (132)
Q Consensus 65 vP~~~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~ergW~vd~~~~~~ 131 (132)
+|+++|++||+++++|||.+||+|+||||.+||+++++++|+|+|++|+.+|+++|||+++++..|.
T Consensus 169 ~p~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~F~~~~gW~~~~~~v~F 235 (274)
T 4b4t_T 169 QNISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERNWPIVNSKVYF 235 (274)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHHHHHHTTCCCCSSCCCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHHHHHHcCCEEeCCEeEE
Confidence 8999999999999999999999999999999999999999999999999999999999999988774
No 2
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=99.97 E-value=4e-31 Score=209.09 Aligned_cols=115 Identities=30% Similarity=0.473 Sum_probs=107.7
Q ss_pred CCCCCCcCcchhhHHHHHHHhccCChhHHHHHHhhhchhhh------------------------HHhccCCCCCccHHH
Q psy13230 17 SRVPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM------------------------IFLAKDGVPSPRYNA 72 (132)
Q Consensus 17 ~~lp~S~~~~~ilgL~LL~LLsqnriaeFHteLE~l~~~~~------------------------V~~~~~~vP~~~y~~ 72 (132)
+.+|+|+++..++|+|||++|++|+++|||++||.+|.+.. +|...++.|++.|.+
T Consensus 88 ~~~~~s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~~~~~ 167 (229)
T 4b0z_A 88 DSLVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSY 167 (229)
T ss_dssp SCCCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCGGGHH
T ss_pred ccCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccchHHH
Confidence 35789999999999999999999999999999999997642 566677899999999
Q ss_pred HHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHhhcCCeeeceeeee
Q psy13230 73 FMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKKVKNIVYFYIFYI 131 (132)
Q Consensus 73 Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~ergW~vd~~~~~~ 131 (132)
||+.+++++|.++++|++|||++||+++++++|+|+|++|+.+|+++|||+++++.+|.
T Consensus 168 ~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~gw~i~dg~i~F 226 (229)
T 4b0z_A 168 FMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEERGWDIRDGVIYF 226 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHHTCEEETTEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHcCCEEeCCEEec
Confidence 99999999999999999999999999999999999999999999999999999998885
No 3
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=99.84 E-value=4.5e-21 Score=152.38 Aligned_cols=107 Identities=16% Similarity=0.027 Sum_probs=90.5
Q ss_pred CCCCcCcchhhHHHHHHHhccCChhHHHHHHhhhchhhh----------------------HHhccCCCCCccHHHHHHH
Q psy13230 19 VPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM----------------------IFLAKDGVPSPRYNAFMET 76 (132)
Q Consensus 19 lp~S~~~~~ilgL~LL~LLsqnriaeFHteLE~l~~~~~----------------------V~~~~~~vP~~~y~~Fm~~ 76 (132)
+.|+..+.+++|++||.+|+++..+|||+.+++||.... +|.+-+.- +++...+.-
T Consensus 56 ~~p~~~~~~ii~~iLlk~L~~~p~~DF~~~l~LIp~~~~~~~~I~~i~~L~~~L~~~~y~~fW~~l~~~--~~l~~~i~g 133 (226)
T 1rz4_A 56 FNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDEN--MDLLEGITG 133 (226)
T ss_dssp HSGGGCCHHHHHHHHHHHHHTTTSTHHHHHHHTSCHHHHTSTTHHHHHHHHHHHHTTCHHHHHHHSCTT--CHHHHTSTT
T ss_pred cCCcccchhHHHHHHHHHHHcCCHHHHHHHHHhCChhhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcC--hhHHHHHhH
Confidence 478999999999999999999999999999999997544 55544332 233334444
Q ss_pred HHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHhhcCCeeece
Q psy13230 77 LIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKKVKNIVYFY 127 (132)
Q Consensus 77 L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~ergW~vd~~ 127 (132)
+.++||++||.|+++||.+||+++++++||+.|++++.+|++++||++|++
T Consensus 134 f~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~~~GW~vd~~ 184 (226)
T 1rz4_A 134 FEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWSADES 184 (226)
T ss_dssp HHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHHHHTCEECC-
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHHHCCCEECCC
Confidence 999999999999999999999999999998778999999999999999644
No 4
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=98.91 E-value=4.6e-09 Score=86.79 Aligned_cols=104 Identities=13% Similarity=0.160 Sum_probs=85.4
Q ss_pred CCCcCcchhhHHHHHHHhccCChhHHHHHHhhhchhhh----------HHhc--------c---------CC--------
Q psy13230 20 PESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM----------IFLA--------K---------DG-------- 64 (132)
Q Consensus 20 p~S~~~~~ilgL~LL~LLsqnriaeFHteLE~l~~~~~----------V~~~--------~---------~~-------- 64 (132)
.+++++..+.|.+||+.|.+ ++++.+++.+|.+.. +..+ + ++
T Consensus 110 ~~~~ne~EF~aY~lL~~l~~---~~~~~~l~~Lp~~i~~~p~Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFrL~ 186 (316)
T 3t5v_A 110 GTCPNEAEFRAYALLSKIRD---PQYDENIQRLPKHIFQDKLVQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQLM 186 (316)
T ss_dssp CCCTTHHHHHHHHHHHSTTC---THHHHHHTTSCHHHHTSHHHHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcc---chHHHHHHhCCHHHhcCHHHHHHHHHHHHHHhcccccccccccccccchHHHHHHHH
Confidence 35789999999999999976 478899999997654 1111 0 11
Q ss_pred -CCCccH--HHHHHHHHHHHHHHHHHhHHHhc----CcccHHHHHhhhCCCCHHHHHHHHhhcCCeeec
Q psy13230 65 -VPSPRY--NAFMETLIDTTRNEIASCIEKAY----TVISVGDTAQKLHIGSEKQMVEFGKKVKNIVYF 126 (132)
Q Consensus 65 -vP~~~y--~~Fm~~L~~TIR~eIA~ciEkAY----~sLsl~~a~~LL~~~s~~el~~Fa~ergW~vd~ 126 (132)
-|...| ..+|+...+++|..+..|+.+|| ..+|++.++++|+|++++|+.+|++..||++++
T Consensus 187 ~~~~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~~~gl~~~~ 255 (316)
T 3t5v_A 187 QSPSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCNYYSIEIIN 255 (316)
T ss_dssp TCTTSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHHHTTCCEET
T ss_pred hccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHHHCCCeEeC
Confidence 133334 67888888999999999999999 489999999999999999999999999999975
No 5
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=91.78 E-value=0.18 Score=33.77 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHhh
Q psy13230 77 LIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKK 119 (132)
Q Consensus 77 L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~e 119 (132)
|.+.+.++--..+.+-|++|+++..+++++++ ++++++++.+
T Consensus 12 L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls-~~~vE~~ls~ 53 (84)
T 1ufm_A 12 LDRAVIEHNLLSASKLYNNITFEELGALLEIP-AAKAEKIASQ 53 (84)
T ss_dssp CCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcC-HHHHHHHHHH
Confidence 34455555555688899999999999999998 8888888654
No 6
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.80 E-value=1.9 Score=36.14 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=42.1
Q ss_pred cHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHhh
Q psy13230 69 RYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKK 119 (132)
Q Consensus 69 ~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~e 119 (132)
......+.|...||...-.-+-+.|+++++++.++.++++ +++++....+
T Consensus 290 ~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls-~~evE~~L~~ 339 (394)
T 3txn_A 290 IVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLP-MPQVEKKLSQ 339 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcC-HHHHHHHHHH
Confidence 3455677889999998888888999999999999999995 8888887644
No 7
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.76 E-value=0.25 Score=43.33 Aligned_cols=73 Identities=18% Similarity=0.238 Sum_probs=52.9
Q ss_pred ccCChhHHHHHHhhhchhhhHHhccCCCCCccHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHH
Q psy13230 38 SQNRVAEFHMELERIQYEDMIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFG 117 (132)
Q Consensus 38 sqnriaeFHteLE~l~~~~~V~~~~~~vP~~~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa 117 (132)
..|++.+|...||.-. .+|...++. ..++.|...+...-...+.++|++||+.+.++.|+++|+++++.++
T Consensus 353 r~GdL~~F~~~L~~h~---~~F~~Dgty------~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iV 423 (523)
T 4b4t_S 353 KLGDLKKFTSTITKYK---QLLLKDDTY------QLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMV 423 (523)
T ss_dssp HHTCHHHHHHHHHHTH---HHHHHTTCT------HHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHH
T ss_pred HcCCHHHHHHHHHHhc---ceeccCChh------HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHH
Confidence 3566666666665432 156665543 4566777777777778889999999999999999998777777765
Q ss_pred hh
Q psy13230 118 KK 119 (132)
Q Consensus 118 ~e 119 (132)
.+
T Consensus 424 Ak 425 (523)
T 4b4t_S 424 SR 425 (523)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 8
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.59 E-value=2 Score=35.78 Aligned_cols=47 Identities=17% Similarity=0.151 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHhh
Q psy13230 72 AFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKK 119 (132)
Q Consensus 72 ~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~e 119 (132)
.-...|...|++.--..+.+-|++|+++..+++|+++ +++++.++.+
T Consensus 336 ~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~-~~evE~~ls~ 382 (445)
T 4b4t_P 336 HHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLT-ESQTETYISD 382 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcC-HHHHHHHHHH
Confidence 4467788999999888999999999999999999997 9999988754
No 9
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=83.75 E-value=0.49 Score=33.54 Aligned_cols=21 Identities=10% Similarity=0.031 Sum_probs=19.2
Q ss_pred hhCCCCHHHHHHHHhhcCCee
Q psy13230 104 KLHIGSEKQMVEFGKKVKNIV 124 (132)
Q Consensus 104 LL~~~s~~el~~Fa~ergW~v 124 (132)
-|.|+|.+++++||+++||..
T Consensus 63 ~L~F~skE~AiayAek~G~~y 83 (108)
T 2lju_A 63 CLSFTTRELAIAYAVAHKIDY 83 (108)
T ss_dssp CEEESSHHHHHHHHHHTTCEE
T ss_pred eEecCCHHHHHHHHHHcCCEE
Confidence 478999999999999999985
No 10
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=81.92 E-value=0.58 Score=33.08 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=19.1
Q ss_pred hhCCCCHHHHHHHHhhcCCee
Q psy13230 104 KLHIGSEKQMVEFGKKVKNIV 124 (132)
Q Consensus 104 LL~~~s~~el~~Fa~ergW~v 124 (132)
-|.|+|.+++++||+++||..
T Consensus 55 ~L~F~skE~AiayAek~G~~y 75 (106)
T 2jya_A 55 KLTFETQEQAEAYAQRKGIEY 75 (106)
T ss_dssp EEEESSHHHHHHHHHHHTCEE
T ss_pred eEecCCHHHHHHHHHHcCCEE
Confidence 478999999999999999985
No 11
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.40 E-value=3.1 Score=34.29 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHh
Q psy13230 69 RYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGK 118 (132)
Q Consensus 69 ~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~ 118 (132)
....-.+.|...||...-.-+-+.|++++++..++.|+++ ++++++...
T Consensus 321 ~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s-~~~~E~~L~ 369 (429)
T 4b4t_R 321 YLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVS-VAFLDNDLG 369 (429)
T ss_dssp TSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHH
Confidence 3344467789999999999999999999999999999997 777666543
No 12
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.84 E-value=12 Score=28.65 Aligned_cols=50 Identities=10% Similarity=0.108 Sum_probs=41.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHh
Q psy13230 68 PRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGK 118 (132)
Q Consensus 68 ~~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~ 118 (132)
+......+.+...+|...-.-+.+.|++++++..+++|+++ +++++....
T Consensus 329 ~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~-~~~~E~~l~ 378 (434)
T 4b4t_Q 329 ELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLD-TQQVEGKLS 378 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcC-HHHHHHHHH
Confidence 33456677888999999999999999999999999999997 777776543
No 13
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.90 E-value=7.5 Score=31.87 Aligned_cols=77 Identities=13% Similarity=0.131 Sum_probs=50.4
Q ss_pred HHHHHHhccCChhHHHHHHhhhchhhhHHhccCCCCCccHHHHHHHHHHHHHHHHH-Hh-HHHhcCcccHHHHHhhhCCC
Q psy13230 31 LNLLYLLSQNRVAEFHMELERIQYEDMIFLAKDGVPSPRYNAFMETLIDTTRNEIA-SC-IEKAYTVISVGDTAQKLHIG 108 (132)
Q Consensus 31 L~LL~LLsqnriaeFHteLE~l~~~~~V~~~~~~vP~~~y~~Fm~~L~~TIR~eIA-~c-iEkAY~sLsl~~a~~LL~~~ 108 (132)
+.||.....|++.+|...++.-.. +. |........+...+|--.- .. ..+.|.+||.++.++.|+++
T Consensus 252 ~~Ll~~f~~g~~~~f~~~~~~~~~---------~~--~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~l~i~ 320 (393)
T 4b4t_O 252 FQLLNALTVGDFDKFDSLIKVQIS---------KI--PILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDISKATHLP 320 (393)
T ss_dssp HHHHHHHHHTCHHHHHHHCCHHHH---------HS--HHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHHHTCC
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhh---------hC--cchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHhCcC
Confidence 358999999999999765543211 11 2333444445555554322 11 12457899999999999996
Q ss_pred CHHHHHHHHhh
Q psy13230 109 SEKQMVEFGKK 119 (132)
Q Consensus 109 s~~el~~Fa~e 119 (132)
++|++.++-+
T Consensus 321 -~~evE~lli~ 330 (393)
T 4b4t_O 321 -KDNVEHLVMR 330 (393)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
Confidence 8999988654
No 14
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=70.62 E-value=15 Score=27.58 Aligned_cols=75 Identities=9% Similarity=0.075 Sum_probs=44.6
Q ss_pred HHHHHhccCChhHHHHHHhhhchhhhHHhccCCCCCccHHHHHHHHHHHHHHHHHHhHHH------hcCcccHHHHHhhh
Q psy13230 32 NLLYLLSQNRVAEFHMELERIQYEDMIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEK------AYTVISVGDTAQKL 105 (132)
Q Consensus 32 ~LL~LLsqnriaeFHteLE~l~~~~~V~~~~~~vP~~~y~~Fm~~L~~TIR~eIA~ciEk------AY~sLsl~~a~~LL 105 (132)
.|..-.-.|++..|...||.-. . .+..++- | .+++.+|.-+-...=| .|++||+++.++-|
T Consensus 85 ~L~~Avr~Gdl~~f~~~l~~~~--~-~f~~~~~-----~-----lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l 151 (203)
T 3t5x_A 85 EVTRAVSEGNLLLLHEALAKHE--A-FFIRCGI-----F-----LILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVAL 151 (203)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTH--H-HHHHHTC-----H-----HHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHhH--H-HHHHCCh-----H-----HHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 4555556677777777776432 1 2222211 1 1345555544333332 69999999999999
Q ss_pred CCC-----CHHHHHHHHhh
Q psy13230 106 HIG-----SEKQMVEFGKK 119 (132)
Q Consensus 106 ~~~-----s~~el~~Fa~e 119 (132)
.++ +++|++.....
T Consensus 152 ~~~~~~~~~~~evE~ila~ 170 (203)
T 3t5x_A 152 KFMQVEDVDIDEVQCILAN 170 (203)
T ss_dssp HHTTCTTCCHHHHHHHHHH
T ss_pred HhcCCCCCCHHHHHHHHHH
Confidence 764 68888877543
No 15
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=67.65 E-value=3.6 Score=24.62 Aligned_cols=30 Identities=7% Similarity=-0.080 Sum_probs=26.4
Q ss_pred HHHHHhhhCCCCHHHHHHHHhhcCCeeece
Q psy13230 98 VGDTAQKLHIGSEKQMVEFGKKVKNIVYFY 127 (132)
Q Consensus 98 l~~a~~LL~~~s~~el~~Fa~ergW~vd~~ 127 (132)
+.+++.+.+.++++++..|-...+|.++.+
T Consensus 9 ia~F~~iTG~~d~~~A~~~Lea~nWDLe~A 38 (45)
T 3e21_A 9 LADFQACTGIENIDEAITLLEQNNWDLVAA 38 (45)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHcCCcHHHH
Confidence 578899999998899999999999998754
No 16
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=64.41 E-value=2.7 Score=26.91 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=17.0
Q ss_pred HhhhCCCCHHHHHHHHhhcCCeee
Q psy13230 102 AQKLHIGSEKQMVEFGKKVKNIVY 125 (132)
Q Consensus 102 ~~LL~~~s~~el~~Fa~ergW~vd 125 (132)
..||.=-..+|+.+|+++.||.+-
T Consensus 23 ~DLLksvds~eV~~YC~~kGwIiP 46 (60)
T 1ng7_A 23 NDLLQAVDSQEVRDYCEKKGWIVN 46 (60)
T ss_dssp HHHHHHHCCHHHHHHHHHHTCCCC
T ss_pred HHHHHcCCCHHHHHHHHHCCceec
Confidence 334432235799999999999984
No 17
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=60.89 E-value=47 Score=24.43 Aligned_cols=71 Identities=14% Similarity=0.246 Sum_probs=48.6
Q ss_pred HHHHHHHhccCChhHHHHHHhhhchhhhHHhccCCCCCccHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCC
Q psy13230 30 GLNLLYLLSQNRVAEFHMELERIQYEDMIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGS 109 (132)
Q Consensus 30 gL~LL~LLsqnriaeFHteLE~l~~~~~V~~~~~~vP~~~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s 109 (132)
-+.||.+.+.|.+.+|..--+.+ |.= . +.+...+|-=.--.+...-..||.++.++-|.++|
T Consensus 62 ~~~LL~iF~~G~~~~y~~~~~~~-------------p~L--~---~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~ 123 (169)
T 3chm_A 62 YLDLLRLFAHGTWGDYKCNATRL-------------PHL--S---PDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSN 123 (169)
T ss_dssp HHHHHHHHHHCCHHHHHHHGGGS-------------CCC--C---HHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCS
T ss_pred HHHHHHHHhcCCHHHHHHhHHhC-------------cch--H---HHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC
Confidence 35788999999999988743333 311 1 33444444432222222378999999999999999
Q ss_pred HHHHHHHHh
Q psy13230 110 EKQMVEFGK 118 (132)
Q Consensus 110 ~~el~~Fa~ 118 (132)
.+|++.++-
T Consensus 124 ~~evE~lvI 132 (169)
T 3chm_A 124 VRELEDFLI 132 (169)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
No 18
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=58.98 E-value=24 Score=21.66 Aligned_cols=45 Identities=9% Similarity=0.130 Sum_probs=34.9
Q ss_pred HHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHhh---cCCee
Q psy13230 79 DTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKK---VKNIV 124 (132)
Q Consensus 79 ~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~e---rgW~v 124 (132)
+..|++|-..+...=..++..+.++.++++ ...+....+. .|+..
T Consensus 9 ~~~~~~IL~~L~~~~~~~s~~eLA~~lgls-r~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 9 DNLEQKILQVLSDDGGPVAIFQLVKKCQVP-KKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp CHHHHHHHHHHHHHCSCEEHHHHHHHHCSC-HHHHHHHHHHHHHTTSEE
T ss_pred cHHHHHHHHHHHHcCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEe
Confidence 446888988887754569999999999998 7777776544 78843
No 19
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=58.36 E-value=13 Score=23.65 Aligned_cols=37 Identities=11% Similarity=0.249 Sum_probs=28.9
Q ss_pred CcccHHHHHhhhCCCCHHHHHHHHhhc---CCee-eceeeee
Q psy13230 94 TVISVGDTAQKLHIGSEKQMVEFGKKV---KNIV-YFYIFYI 131 (132)
Q Consensus 94 ~sLsl~~a~~LL~~~s~~el~~Fa~er---gW~v-d~~~~~~ 131 (132)
..|++++||+.|++. +.-+.+.+++. .|.+ .+..++|
T Consensus 15 ~~LTi~EaAeylgIg-~~~l~~L~~~~~~~~~~~~iG~~~lI 55 (70)
T 1y6u_A 15 YTLTIEEASKYFRIG-ENKLRRLAEENKNANWLIMNGNRIQI 55 (70)
T ss_dssp SEEEHHHHHHHTCSC-HHHHHHHHHHCTTCSSEEEETTEEEE
T ss_pred ceeCHHHHHHHHCcC-HHHHHHHHHcCCCCCcEEEeCCEEEE
Confidence 358999999999998 99999999884 6765 4444444
No 20
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=55.20 E-value=8 Score=27.16 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=27.8
Q ss_pred HHHHHHHHHhHHHhcCcccHHHHHhhhCCC--CHHH
Q psy13230 79 DTTRNEIASCIEKAYTVISVGDTAQKLHIG--SEKQ 112 (132)
Q Consensus 79 ~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~--s~~e 112 (132)
.|+|++|++.+.. +-++..+.+++++++ ++++
T Consensus 10 ~T~Re~Ii~lL~~--~plta~ei~~~l~i~~~~~ke 43 (105)
T 2gmg_A 10 ATRREKIIELLLE--GDYSPSELARILDMRGKGSKK 43 (105)
T ss_dssp HHHHHHHHHHTTT--SCBCTTHHHHSSCCCSSCCHH
T ss_pred ccHHHHHHHHHHc--CCCCHHHHHHHhCCCCCChHH
Confidence 5899999999984 889999999999994 4666
No 21
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=51.16 E-value=8.8 Score=25.69 Aligned_cols=60 Identities=12% Similarity=0.110 Sum_probs=37.8
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHhHHHhcCcc--cHHHHHhhhCCCCHHHHHHHHhhcCCe
Q psy13230 64 GVPSPRYNAFMETLIDTTRNEIASCIEKAYTVI--SVGDTAQKLHIGSEKQMVEFGKKVKNI 123 (132)
Q Consensus 64 ~vP~~~y~~Fm~~L~~TIR~eIA~ciEkAY~sL--sl~~a~~LL~~~s~~el~~Fa~ergW~ 123 (132)
.+|..+...|.-...+---.|||.-+..+..++ -+..+.+-|+.+|..++..+|.+.||.
T Consensus 34 ~Lt~re~~Vl~l~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~r~elv~~a~~~gli 95 (99)
T 1p4w_A 34 RLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIALLNYLSSVSMT 95 (99)
T ss_dssp SCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCC
Confidence 344444444443334444456666655544432 245667778889999999999999994
No 22
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=46.21 E-value=2.1 Score=28.15 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=8.7
Q ss_pred HHHHhhhCCCCHHHHHHHHhhcCCe
Q psy13230 99 GDTAQKLHIGSEKQMVEFGKKVKNI 123 (132)
Q Consensus 99 ~~a~~LL~~~s~~el~~Fa~ergW~ 123 (132)
..+.+-|+..|..++..++.+.||.
T Consensus 64 ~r~~~kL~~~~~~~l~~~a~~~gl~ 88 (95)
T 3c57_A 64 SRLLAKLGMERRTQAAVFATELKRS 88 (95)
T ss_dssp HHHHHHHTCCCCCC-----------
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 3444556667778888888888875
No 23
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=44.65 E-value=47 Score=21.93 Aligned_cols=63 Identities=11% Similarity=0.123 Sum_probs=39.4
Q ss_pred hchhhhHHhccCCCCCccHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCC--CHHHHHHHHhhcCC
Q psy13230 52 IQYEDMIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIG--SEKQMVEFGKKVKN 122 (132)
Q Consensus 52 l~~~~~V~~~~~~vP~~~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~--s~~el~~Fa~ergW 122 (132)
|.+++..+=+.-++|...|-..=+.|+. ...+.-..+..++|..+..+| -.+.+-+|-.+.||
T Consensus 23 Ls~~E~~LC~~lrL~P~~YL~~K~~Li~--------E~~k~g~~lkk~da~~~~kiD~~K~~~iydf~~~~Gw 87 (88)
T 2elj_A 23 LSNDEQQLCIQLKILPKPYLVLKEVMFR--------ELLKTGGNLSKSACRELLNIDPIKANRIYDFFQSQNW 87 (88)
T ss_dssp SCHHHHHHHHHTTCCHHHHHHHHHHHHH--------HHHHHSSCCCHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHhCCCHHHHHHHHHHHHH--------HHHHhCCCccHHHHHHHHcccHHHHHHHHHHHHHcCC
Confidence 3333334445566666666544343332 223434568899999999998 23467778888999
No 24
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=43.71 E-value=8.2 Score=25.26 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=16.5
Q ss_pred HHHHhhhCCCCHHHHHHHHhhcCC
Q psy13230 99 GDTAQKLHIGSEKQMVEFGKKVKN 122 (132)
Q Consensus 99 ~~a~~LL~~~s~~el~~Fa~ergW 122 (132)
..+.+-|+.+|..++..+|.++||
T Consensus 66 ~~i~~Klgv~~r~~lv~~a~~~gl 89 (90)
T 3ulq_B 66 TSIFNKLNVGSRTEAVLIAKSDGV 89 (90)
T ss_dssp HHHHHHTTCSSHHHHHHHHTC---
T ss_pred HHHHHHHCCCCHHHHHHHHHHcCC
Confidence 344555678899999999999998
No 25
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=41.50 E-value=56 Score=19.55 Aligned_cols=68 Identities=12% Similarity=0.117 Sum_probs=39.7
Q ss_pred hHHHHHHhhhchhhh-HHh-ccCCCCCccHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHhhc
Q psy13230 43 AEFHMELERIQYEDM-IFL-AKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKKV 120 (132)
Q Consensus 43 aeFHteLE~l~~~~~-V~~-~~~~vP~~~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~er 120 (132)
.+....++.||+... |+. .-...+..+.+.-+..=..||+..+..+. +-|..+|..++..++.+.
T Consensus 8 ~~l~~~l~~L~~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~r~~-------------~kl~~~~~~~l~~~~~~~ 74 (79)
T 1x3u_A 8 NDIRARLQTLSERERQVLSAVVAGLPNKSIAYDLDISPRTVEVHRANVM-------------AKMKAKSLPHLVRMALAG 74 (79)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHTTTCCHHHHHHHTTSCHHHHHHHHHHHH-------------HHTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHH-------------HHHcCCCHHHHHHHHHHh
Confidence 455666777776554 221 23334444444444444566665544443 345667888899998888
Q ss_pred CCe
Q psy13230 121 KNI 123 (132)
Q Consensus 121 gW~ 123 (132)
|+.
T Consensus 75 g~~ 77 (79)
T 1x3u_A 75 GFG 77 (79)
T ss_dssp TCC
T ss_pred CCC
Confidence 864
No 26
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=40.20 E-value=20 Score=22.63 Aligned_cols=44 Identities=9% Similarity=0.132 Sum_probs=27.2
Q ss_pred CCccHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHhhcCC
Q psy13230 66 PSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKKVKN 122 (132)
Q Consensus 66 P~~~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~ergW 122 (132)
...+.+.-+.+=..||+..+.+ +.+-|+..+..++..+|.+.||
T Consensus 38 s~~eIA~~l~is~~tV~~~l~r-------------~~~kL~~~~~~~l~~~a~~~gl 81 (82)
T 1je8_A 38 PNKMIARRLDITESTVKVHVKH-------------MLKKMKLKSRVEAAVWVHQERI 81 (82)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHH-------------HHHHTTCSSHHHHHHHHHHTTC
T ss_pred CHHHHHHHHCcCHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHHHcCC
Confidence 3344444444445566655433 4444566778899999999987
No 27
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=39.80 E-value=28 Score=20.02 Aligned_cols=25 Identities=12% Similarity=0.333 Sum_probs=19.5
Q ss_pred HHHHhhhCCCCHHHHHHHHhhcCCe
Q psy13230 99 GDTAQKLHIGSEKQMVEFGKKVKNI 123 (132)
Q Consensus 99 ~~a~~LL~~~s~~el~~Fa~ergW~ 123 (132)
..+.+-|+.+|..++..++.+.||.
T Consensus 35 ~~~~~kl~~~~~~~l~~~~~~~g~~ 59 (61)
T 2jpc_A 35 MNMMRKLQVHKVTELLNCARRMRLI 59 (61)
T ss_dssp HHHHHHHTCSSHHHHHHHHHCSCCC
T ss_pred HHHHHHHCCCCHHHHHHHHHHcCCC
Confidence 3445557778999999999999983
No 28
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=37.60 E-value=52 Score=23.58 Aligned_cols=68 Identities=10% Similarity=0.095 Sum_probs=41.7
Q ss_pred hhHHHHHHhhhchhhh-HHh-ccCCCCCccHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHhh
Q psy13230 42 VAEFHMELERIQYEDM-IFL-AKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKK 119 (132)
Q Consensus 42 iaeFHteLE~l~~~~~-V~~-~~~~vP~~~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~e 119 (132)
..+.+..|+.|+.... ++. ........+....+..-..||+..+..+ .+-|+.+|..|+..+|.+
T Consensus 189 ~~~~~~~l~~L~~r~~~i~~~~~~g~~~~eia~~l~~s~~tv~~~l~~i-------------~~kl~~~~~~elv~~~~~ 255 (258)
T 3p7n_A 189 RERAAEMLKTLSPRQLEVTTLVASGLRNKEVAARLGLSEKTVKMHRGLV-------------MEKLNLKTSADLVRIAVE 255 (258)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHH-------------HHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHH-------------HHHHCCCCHHHHHHHHHH
Confidence 3456777887876544 221 1122233444544444466666665544 344788899999999999
Q ss_pred cCC
Q psy13230 120 VKN 122 (132)
Q Consensus 120 rgW 122 (132)
.||
T Consensus 256 ~gl 258 (258)
T 3p7n_A 256 AGI 258 (258)
T ss_dssp HTC
T ss_pred cCC
Confidence 886
No 29
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=36.36 E-value=74 Score=20.65 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHh---hcCCee
Q psy13230 69 RYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGK---KVKNIV 124 (132)
Q Consensus 69 ~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~---ergW~v 124 (132)
....+++.|.+..|-+|..++.+ ...++.++++.++++ ...+....+ +.||..
T Consensus 21 ~~~~~~~~l~~~~~~~il~~L~~--~~~s~~ela~~l~is-~stvsr~l~~Le~~Glv~ 76 (119)
T 2lkp_A 21 QVASTLQALATPSRLMILTQLRN--GPLPVTDLAEAIGME-QSAVSHQLRVLRNLGLVV 76 (119)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHH--CCCCHHHHHHHHSSC-HHHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH--CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence 45667777888889999998876 679999999999997 555554433 367764
No 30
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.18 E-value=22 Score=22.45 Aligned_cols=30 Identities=10% Similarity=-0.213 Sum_probs=25.5
Q ss_pred HHHHHhhhCCCCHHHHHHHHhhcCCeeece
Q psy13230 98 VGDTAQKLHIGSEKQMVEFGKKVKNIVYFY 127 (132)
Q Consensus 98 l~~a~~LL~~~s~~el~~Fa~ergW~vd~~ 127 (132)
+...+.+.+..+++.+..|-+..+|.++.+
T Consensus 22 i~qF~~ITg~~d~~~A~~~Le~~~WnLe~A 51 (67)
T 2dam_A 22 LLQFQDLTGIESMDQCRHTLEQHNWNIEAA 51 (67)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHcCCCHHHH
Confidence 677888898778999999999999988754
No 31
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=31.93 E-value=21 Score=21.13 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=18.1
Q ss_pred HHHhhhCCCCHHHHHHHHhhcCC
Q psy13230 100 DTAQKLHIGSEKQMVEFGKKVKN 122 (132)
Q Consensus 100 ~a~~LL~~~s~~el~~Fa~ergW 122 (132)
.+.+-|+..+..++..++.++||
T Consensus 49 ~~~~kl~~~~~~~~~~~~~~~g~ 71 (74)
T 1fse_A 49 NAMQKLGVKGRSQAVVELLRMGE 71 (74)
T ss_dssp HHHHHHTCSSHHHHHHHHHHTTS
T ss_pred HHHHHHCCCCHHHHHHHHHHhCC
Confidence 34455667788999999999998
No 32
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=31.09 E-value=12 Score=23.92 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=29.4
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHhhcCC
Q psy13230 65 VPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKKVKN 122 (132)
Q Consensus 65 vP~~~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~ergW 122 (132)
.+..+.+.-+.+=..|||..+.+ +.+-|+..|..++..+|.++||
T Consensus 45 ~s~~eIA~~l~is~~tV~~~l~r-------------~~~kL~~~~~~~l~~~a~~~gl 89 (91)
T 2rnj_A 45 YSNQEIASASHITIKTVKTHVSN-------------ILSKLEVQDRTQAVIYAFQHNL 89 (91)
T ss_dssp CCTTHHHHHHTCCHHHHHHHHHH-------------HHHHTTCCSSHHHHHHHHHHTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHH-------------HHHHHCCCCHHHHHHHHHHcCC
Confidence 44455555555556666655443 3344566788899999999887
No 33
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=29.76 E-value=69 Score=20.19 Aligned_cols=53 Identities=15% Similarity=0.069 Sum_probs=40.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHH---hhcCCee
Q psy13230 68 PRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFG---KKVKNIV 124 (132)
Q Consensus 68 ~~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa---~ergW~v 124 (132)
+....+.+.|.+..|.+|-..+ . ..++..+.++.++++ ...+.... .+.|+..
T Consensus 19 ~~~~~~~~~l~~~~r~~Il~~L-~--~~~~~~eLa~~l~is-~~tv~~~L~~L~~~Glv~ 74 (96)
T 1y0u_A 19 EYHKRYNYAVTNPVRRKILRML-D--KGRSEEEIMQTLSLS-KKQLDYHLKVLEAGFCIE 74 (96)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHH-H--TTCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCCHHHHHHHHHH-c--CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence 3456677788899999999999 3 569999999999997 55555543 3467764
No 34
>3sol_A Type II secretion pathway related protein; general secretory pathway, protein transport, pilotin; 1.90A {Escherichia coli}
Probab=29.39 E-value=22 Score=24.39 Aligned_cols=16 Identities=0% Similarity=-0.390 Sum_probs=12.8
Q ss_pred HHHHHHhhcCCeeece
Q psy13230 112 QMVEFGKKVKNIVYFY 127 (132)
Q Consensus 112 el~~Fa~ergW~vd~~ 127 (132)
.+..||++|||.+.++
T Consensus 38 ~a~~~A~~~gWD~~~y 53 (94)
T 3sol_A 38 VANRIAIGKGWQSLTQ 53 (94)
T ss_dssp HHHHHHHHTTCCSCCH
T ss_pred HHHHHHHHcCCChhhh
Confidence 5677899999998753
No 35
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=29.21 E-value=1e+02 Score=18.88 Aligned_cols=55 Identities=11% Similarity=0.068 Sum_probs=41.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHH---hhcCCee
Q psy13230 68 PRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFG---KKVKNIV 124 (132)
Q Consensus 68 ~~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa---~ergW~v 124 (132)
++...+.+.|.+..|.+|-..+.. -..++..+.++.++++ ...+.... .+.||..
T Consensus 12 ~~~~~~~~~l~~~~~~~il~~l~~-~~~~s~~ela~~l~is-~~tvs~~l~~L~~~glv~ 69 (99)
T 3cuo_A 12 EQAAALLKAMSHPKRLLILCMLSG-SPGTSAGELTRITGLS-ASATSQHLARMRDEGLID 69 (99)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHTT-CCSEEHHHHHHHHCCC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCChHHHHHHHHHHh-CCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence 445667777888899999998854 4579999999999997 55555544 3478764
No 36
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=28.32 E-value=1e+02 Score=19.50 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHH---hhcCCee
Q psy13230 69 RYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFG---KKVKNIV 124 (132)
Q Consensus 69 ~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa---~ergW~v 124 (132)
....++..|-+..|.+|-.++. -..++..+.++.++++ ...+.... .+.||..
T Consensus 10 ~~~~~~~~l~~~~r~~IL~~L~--~~~~~~~ela~~l~is-~~tv~~~l~~L~~~gli~ 65 (114)
T 2oqg_A 10 ELASVFAALSDETRWEILTELG--RADQSASSLATRLPVS-RQAIAKHLNALQACGLVE 65 (114)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH--HSCBCHHHHHHHSSSC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhCChHHHHHHHHHH--cCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCee
Confidence 4556777788889999999983 4569999999999997 55555554 3478864
No 37
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=28.24 E-value=44 Score=23.23 Aligned_cols=21 Identities=5% Similarity=-0.220 Sum_probs=15.1
Q ss_pred CCHHHHHHHHhh---cCCeeecee
Q psy13230 108 GSEKQMVEFGKK---VKNIVYFYI 128 (132)
Q Consensus 108 ~s~~el~~Fa~e---rgW~vd~~~ 128 (132)
.+++++...+.. .||-+++..
T Consensus 74 Ps~eDI~RV~arLaa~GWPl~~~~ 97 (103)
T 2kvc_A 74 PSPEDVERVRARLAAQGWPLDDVR 97 (103)
T ss_dssp SCHHHHHHHHHHHGGGCCCSSCCC
T ss_pred CCHHHHHHHHHHHHhcCCCCCCCC
Confidence 478888777654 799987643
No 38
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=28.19 E-value=31 Score=25.64 Aligned_cols=31 Identities=13% Similarity=0.066 Sum_probs=23.6
Q ss_pred HHHhhhCCC-CH---HHHHHHHhhcCCeeeceeee
Q psy13230 100 DTAQKLHIG-SE---KQMVEFGKKVKNIVYFYIFY 130 (132)
Q Consensus 100 ~a~~LL~~~-s~---~el~~Fa~ergW~vd~~~~~ 130 (132)
-++++++|+ |. ..+..+|+++||+++.+..|
T Consensus 109 fg~ALl~fTGSk~hn~~lR~~A~~kG~~L~e~Gl~ 143 (174)
T 1jaj_A 109 KPYAIFHFTGPVSYLIRIRAALKKKNYKLNQYGLF 143 (174)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHTTEEEETTEEE
T ss_pred HHHHHHHhHCCHHHHHHHHHHHHHcCCCcCccccc
Confidence 457777776 33 37888899999999987654
No 39
>2jr5_A UPF0350 protein VC_2471; structure, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Vibrio cholerae}
Probab=26.50 E-value=83 Score=21.05 Aligned_cols=47 Identities=11% Similarity=0.169 Sum_probs=28.0
Q ss_pred hccCChhHHHHHHhhhchhhh-HHhccCCCCCccHHHHHHHHHHHHHH
Q psy13230 37 LSQNRVAEFHMELERIQYEDM-IFLAKDGVPSPRYNAFMETLIDTTRN 83 (132)
Q Consensus 37 LsqnriaeFHteLE~l~~~~~-V~~~~~~vP~~~y~~Fm~~L~~TIR~ 83 (132)
|+....++|-..|+.=+++.. .+..++.+|.++....++.+.+..+.
T Consensus 36 ls~~el~~f~~LL~~~D~DL~~W~~g~~~~p~~~~~~lv~~I~~~~~~ 83 (94)
T 2jr5_A 36 LTESEQDDFVALLESDDPDLFAWVMGHGRCENLGLAAMVDKIVAHNLS 83 (94)
T ss_dssp CCHHHHHHHHHHHTSCCHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcc
Confidence 455566677777765433332 33456667777777777766665443
No 40
>1x6i_A Hypothetical protein YGFY; structural genomics, transcriptional regulation, structure 2 function project, S2F, unknown function; 1.20A {Escherichia coli} PDB: 1x6j_A
Probab=26.03 E-value=62 Score=21.51 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=28.9
Q ss_pred hccCChhHHHHHHhhhchhhh-HHhccCCCCCccHHHHHHHHHHHHHH
Q psy13230 37 LSQNRVAEFHMELERIQYEDM-IFLAKDGVPSPRYNAFMETLIDTTRN 83 (132)
Q Consensus 37 LsqnriaeFHteLE~l~~~~~-V~~~~~~vP~~~y~~Fm~~L~~TIR~ 83 (132)
|+.....+|-..|+.=+++.. .+..++.+|.++....++.+....+.
T Consensus 38 ls~~el~~f~~LL~~~D~DL~~w~~g~~~~p~~~~~~l~~~I~~~~~~ 85 (91)
T 1x6i_A 38 LSDDEKRIFIRLLECDDPDLFNWLMNHGKPADAELEMMVRLIQTRNRE 85 (91)
T ss_dssp SCHHHHHHHHHHHTSCHHHHHHHHTTSSBCSSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhc
Confidence 456667777777775433332 33455667777777777766665554
No 41
>3utk_A Lipoprotein OUTS; nested (perpendicular) alpha-helical hairpins, protein trans pilot protein; 1.65A {Dickeya dadantii} PDB: 3uym_A
Probab=25.37 E-value=28 Score=25.34 Aligned_cols=16 Identities=13% Similarity=-0.114 Sum_probs=13.0
Q ss_pred HHHHHHhhcCCeeece
Q psy13230 112 QMVEFGKKVKNIVYFY 127 (132)
Q Consensus 112 el~~Fa~ergW~vd~~ 127 (132)
.+..||++|||.+.++
T Consensus 75 ~av~~A~~rgWD~s~y 90 (133)
T 3utk_A 75 TAVNVAVQKGWDTGRY 90 (133)
T ss_dssp HHHHHHHHTTCCTTSC
T ss_pred HHHHHHHHcCCCchhh
Confidence 5678899999998754
No 42
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=24.38 E-value=1.6e+02 Score=19.59 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHH---HHHHHHhhcCCeeec
Q psy13230 73 FMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEK---QMVEFGKKVKNIVYF 126 (132)
Q Consensus 73 Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~---el~~Fa~ergW~vd~ 126 (132)
|....++..++.+..-+++ -..+++.++..+++.+ .+ .+.+|-...||+..-
T Consensus 59 ~~~~~~~~~~~~l~~~~~~-~~~it~ae~Rd~lg~s-RK~ai~lLE~~Dr~g~TrR~ 113 (121)
T 2pjp_A 59 YRNDRIVEFANMIRDLDQE-CGSTCAADFRDRLGVG-RKLAIQILEYFDRIGFTRRR 113 (121)
T ss_dssp EEHHHHHHHHHHHHHHHHH-HSSEEHHHHHHHHTSC-HHHHHHHHHHHHHHTSEEEE
T ss_pred ECHHHHHHHHHHHHHHHHH-CCCccHHHHHHHHCCc-HHHHHHHHHHHhhcCCeEee
Confidence 3334444455555444444 3889999999999965 88 888888889998753
No 43
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=24.24 E-value=68 Score=23.84 Aligned_cols=25 Identities=8% Similarity=0.062 Sum_probs=19.8
Q ss_pred HHHHhhhCCCCHHHHHHHHhhcCCe
Q psy13230 99 GDTAQKLHIGSEKQMVEFGKKVKNI 123 (132)
Q Consensus 99 ~~a~~LL~~~s~~el~~Fa~ergW~ 123 (132)
..+.+-|+.+|..++...|.++||-
T Consensus 212 ~~~~~kl~~~~~~~~~~~a~~~gli 236 (237)
T 3szt_A 212 VNAMRKLNSSNKAEATMKAYAIGLL 236 (237)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCCHHHHHHHHHHcCCC
Confidence 3344557888999999999999983
No 44
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=24.05 E-value=51 Score=21.26 Aligned_cols=56 Identities=9% Similarity=0.081 Sum_probs=41.4
Q ss_pred CccHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHH---hhcCCe
Q psy13230 67 SPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFG---KKVKNI 123 (132)
Q Consensus 67 ~~~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa---~ergW~ 123 (132)
.|.|..++..+.+..|.+|..+.-+.=+.++..+.++.++++ ...+.+.. .+.||.
T Consensus 5 ~~~~~~~~~~~~~~~~l~Il~~l~~~g~~~s~~eLa~~lgvs-~~tV~~~L~~L~~~GlV 63 (110)
T 1q1h_A 5 EDLFINLAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIK-VNDVRKKLNLLEEQGFV 63 (110)
T ss_dssp TTHHHHHHHTTSCSTTHHHHHHHHHHCSCBCHHHHHHTTTSC-HHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHcChHHHHHHHHHHHcCCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCE
Confidence 467778888888888889998885555569999999999997 55555443 335663
No 45
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=24.00 E-value=1.7e+02 Score=19.57 Aligned_cols=53 Identities=21% Similarity=0.357 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHH---hhcCCee
Q psy13230 69 RYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFG---KKVKNIV 124 (132)
Q Consensus 69 ~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa---~ergW~v 124 (132)
....+.+.|.+..|-+|-..+.. ...+..++++.++++ ...+.... ++.||..
T Consensus 35 ~~~~~~kaL~~~~rl~IL~~L~~--~~~s~~ela~~lgis-~stvs~~L~~Le~~Glv~ 90 (122)
T 1r1t_A 35 SLAEFFAVLADPNRLRLLSLLAR--SELCVGDLAQAIGVS-ESAVSHQLRSLRNLRLVS 90 (122)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTT--CCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeE
Confidence 35667777888899999998864 578999999999997 65555543 3368865
No 46
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=23.91 E-value=1.4e+02 Score=19.14 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHH---hhcCCee
Q psy13230 69 RYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFG---KKVKNIV 124 (132)
Q Consensus 69 ~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa---~ergW~v 124 (132)
....+.+.|.+..|.+|-..+. -..++..+.++.++++ ...+.... ++.||..
T Consensus 15 ~~~~~~~~l~~~~r~~IL~~L~--~~~~~~~ela~~l~is-~stvs~~L~~L~~~Glv~ 70 (106)
T 1r1u_A 15 RVTEIFKALGDYNRIRIMELLS--VSEASVGHISHQLNLS-QSNVSHQLKLLKSVHLVK 70 (106)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHH--HCCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhCCHHHHHHHHHHH--hCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeE
Confidence 3456677788999999999886 3678999999999997 55555543 3467764
No 47
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=23.85 E-value=1.2e+02 Score=18.51 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=29.7
Q ss_pred HHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHH---hhcCCee
Q psy13230 82 RNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFG---KKVKNIV 124 (132)
Q Consensus 82 R~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa---~ergW~v 124 (132)
|.+|..++.+. ..++..+.++.++++ ...+.... .+.|+..
T Consensus 2 r~~Il~~L~~~-~~~s~~eLa~~lgvs-~~tv~r~L~~L~~~GlI~ 45 (81)
T 2htj_A 2 KNEILEFLNRH-NGGKTAEIAEALAVT-DYQARYYLLLLEKAGMVQ 45 (81)
T ss_dssp HHHHHHHHHHS-CCCCHHHHHHHHTSC-HHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence 66777777653 679999999999997 55555543 4467765
No 48
>1g4d_A Repressor protein C; protein/DNA complex, helix-turn-helix, winged-helix, bacteriophage MU; NMR {Enterobacteria phage MU} SCOP: a.6.1.7 PDB: 1qpm_A
Probab=23.20 E-value=69 Score=20.30 Aligned_cols=29 Identities=7% Similarity=-0.246 Sum_probs=21.9
Q ss_pred ccHHHHHhhhCCC-CHHHHHHHHhhcCCee
Q psy13230 96 ISVGDTAQKLHIG-SEKQMVEFGKKVKNIV 124 (132)
Q Consensus 96 Lsl~~a~~LL~~~-s~~el~~Fa~ergW~v 124 (132)
.+.++.+.+-+|. +.+-+...|++.||..
T Consensus 5 ~ta~ELa~l~glP~s~~gi~~~A~re~W~~ 34 (69)
T 1g4d_A 5 CSPQEIMAADGMPGSVAGVHYRANVQGWTK 34 (69)
T ss_dssp BCHHHHHTSTTSCSSHHHHHHHHHHHTCCE
T ss_pred CcHHHHhcCCCCCCCHHHHHHHHHHCCCCe
Confidence 4556666665555 6899999999999973
No 49
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=23.00 E-value=51 Score=18.41 Aligned_cols=29 Identities=7% Similarity=-0.128 Sum_probs=22.6
Q ss_pred HHHHHhhhCCCCHHHHHHHHhhcCCeeece
Q psy13230 98 VGDTAQKLHIGSEKQMVEFGKKVKNIVYFY 127 (132)
Q Consensus 98 l~~a~~LL~~~s~~el~~Fa~ergW~vd~~ 127 (132)
+...+.+.+.+ ++.+..|-+..+|.++.+
T Consensus 9 i~~F~~iTg~~-~~~A~~~L~~~~wdle~A 37 (46)
T 1v92_A 9 LREFVAVTGAE-EDRARFFLESAGWDLQIA 37 (46)
T ss_dssp HHHHHHHTCCC-HHHHHHHHHHTTSCSHHH
T ss_pred HHHHHHHhCcC-HHHHHHHHHHcCCCHHHH
Confidence 56677777764 888888888899988654
No 50
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=22.57 E-value=1.2e+02 Score=18.84 Aligned_cols=54 Identities=13% Similarity=0.292 Sum_probs=41.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHH---hhcCCee
Q psy13230 68 PRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFG---KKVKNIV 124 (132)
Q Consensus 68 ~~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa---~ergW~v 124 (132)
+....++..|.+..|.+|-..+.+ ..++..+.++.++++ ...+.... .+.|+..
T Consensus 11 ~~~~~~~~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~is-~~tvs~~L~~L~~~Glv~ 67 (98)
T 3jth_A 11 AKAVVLLKAMANERRLQILCMLHN--QELSVGELCAKLQLS-QSALSQHLAWLRRDGLVT 67 (98)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHTTT--SCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhc--CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeE
Confidence 345677788889999999998876 789999999999997 55555443 3367653
No 51
>4a56_A PULS, pullulanase secretion protein PULS; protein transport, T2SS; 1.24A {Klebsiella oxytoca}
Probab=22.44 E-value=33 Score=23.37 Aligned_cols=15 Identities=20% Similarity=0.031 Sum_probs=12.2
Q ss_pred HHHHHHhhcCCeeec
Q psy13230 112 QMVEFGKKVKNIVYF 126 (132)
Q Consensus 112 el~~Fa~ergW~vd~ 126 (132)
.+..||++|||.+.+
T Consensus 38 ~a~~~A~~~~Wd~~~ 52 (93)
T 4a56_A 38 AAINVGKKRGWANID 52 (93)
T ss_dssp HHHHHHHHHTCCCCC
T ss_pred HHHHHHHHcCCChhh
Confidence 567789999998864
No 52
>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural genomics, unknown function, PSI- 2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 2kjs_A* 2lml_A* 2kwm_A*
Probab=22.43 E-value=1e+02 Score=19.91 Aligned_cols=34 Identities=12% Similarity=0.307 Sum_probs=25.9
Q ss_pred HHHHhHHHhcC-cccHHHHHhhhCCCCHHHHHHHHhhc
Q psy13230 84 EIASCIEKAYT-VISVGDTAQKLHIGSEKQMVEFGKKV 120 (132)
Q Consensus 84 eIA~ciEkAY~-sLsl~~a~~LL~~~s~~el~~Fa~er 120 (132)
++...+|..|. ++|-+++. .+++.+++.++++++
T Consensus 41 eli~~lE~eF~I~i~~ed~~---~~~Tv~dlv~~I~~~ 75 (87)
T 2kci_A 41 NLIVSLEVHYKIKFALGELQ---KLKNVGDLADLVDKK 75 (87)
T ss_dssp HHHHHHHHHHTCCCCHHHHT---TCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCccCHHHHH---hCCCHHHHHHHHHHH
Confidence 45566888897 78877765 678999999998763
No 53
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=21.82 E-value=1.2e+02 Score=19.40 Aligned_cols=34 Identities=12% Similarity=0.294 Sum_probs=26.2
Q ss_pred HHHHhHHHhcC-cccHHHHHhhhCCCCHHHHHHHHhhc
Q psy13230 84 EIASCIEKAYT-VISVGDTAQKLHIGSEKQMVEFGKKV 120 (132)
Q Consensus 84 eIA~ciEkAY~-sLsl~~a~~LL~~~s~~el~~Fa~er 120 (132)
++..-+|+.|. +||.+++ ..+++.+++.+++.++
T Consensus 41 eli~~ie~~fgi~i~~~~l---~~~~TV~dl~~~I~~k 75 (87)
T 2kjs_A 41 NLIVSLEVHYKIKFALGEL---QKLKNVGDLADLVDKK 75 (87)
T ss_dssp HHHHHHHHHHTCCCCHHHH---TTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCceecHHHH---HcCCCHHHHHHHHHHH
Confidence 56677888887 7887765 5678999999997663
No 54
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=21.31 E-value=1.7e+02 Score=20.10 Aligned_cols=64 Identities=11% Similarity=0.192 Sum_probs=40.3
Q ss_pred hhchhhhHHhccCCCCCccHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCC--CHHHHHHHHhhcCCe
Q psy13230 51 RIQYEDMIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIG--SEKQMVEFGKKVKNI 123 (132)
Q Consensus 51 ~l~~~~~V~~~~~~vP~~~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~--s~~el~~Fa~ergW~ 123 (132)
+|.+++..+=+.-++|...|--.-+.|+. |. .+ -..+..++|..+..++ -.+.+-+|-.+.||-
T Consensus 40 LLs~~E~~LCs~lrL~P~~YL~iK~~Li~----E~----~k-~g~lkk~dA~~l~kID~~K~~rIydff~~~GWi 105 (108)
T 2cuj_A 40 KLNEKEKELCQVVRLVPGAYLEYKSALLN----EC----HK-QGGLRLAQARALIKIDVNKTRKIYDFLIREGYI 105 (108)
T ss_dssp TSCHHHHHHHHHTTCCHHHHHHHHHHHHH----HH----HH-SSCCCHHHHHHHHTSCHHHHHHHHHHHHTTTSS
T ss_pred hcCHHHHHHHHHhCCCHHHHHHHHHHHHH----HH----HH-cCCCcHHHHHHHhcccHHHHHHHHHHHHHcCCC
Confidence 44444444545566776666654444332 22 22 2458999999999998 234677788889996
No 55
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=21.13 E-value=1e+02 Score=18.44 Aligned_cols=37 Identities=3% Similarity=0.021 Sum_probs=29.2
Q ss_pred ccHHHHHhhhCC-CCHHHHHHHHhh-----------cCCeeeceeeeeC
Q psy13230 96 ISVGDTAQKLHI-GSEKQMVEFGKK-----------VKNIVYFYIFYIN 132 (132)
Q Consensus 96 Lsl~~a~~LL~~-~s~~el~~Fa~e-----------rgW~vd~~~~~~~ 132 (132)
|++++-|+.++- .+++-+...|++ |-|-++..-.|||
T Consensus 3 ltl~EwA~~~~~~~s~~Tl~r~ar~G~I~Pp~~KvGr~wrv~~~a~~v~ 51 (52)
T 2og0_A 3 LTLQEWNARQRRPRSLETVRRWVRESRIFPPPVKDGREYLFHESAVKVD 51 (52)
T ss_dssp EEHHHHHHTSSSCCCHHHHHHHHHTTCEESCCEEETTEEEEETTCEECC
T ss_pred eeHHHHHHHhcCCCCHHHHHHHHHCCCCCCcccccCCEEEEcccceeeC
Confidence 678888998852 369999999987 5688887777775
No 56
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=20.95 E-value=1.8e+02 Score=19.11 Aligned_cols=64 Identities=11% Similarity=0.187 Sum_probs=40.0
Q ss_pred hhchhhhHHhccCCCCCccHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCC--HHHHHHHHhhcCCe
Q psy13230 51 RIQYEDMIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGS--EKQMVEFGKKVKNI 123 (132)
Q Consensus 51 ~l~~~~~V~~~~~~vP~~~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s--~~el~~Fa~ergW~ 123 (132)
.|.+++..+=+.-++|...|--+=+.|+. |. .+ -..+..++|..+..++- .+.+-+|-.+.||-
T Consensus 22 lLs~~E~~LC~~lrL~P~~YL~~K~~li~----E~----~~-~g~l~k~da~~~~kiD~~K~~~iydf~~~~Gwi 87 (90)
T 2aqe_A 22 KLNEKEKELCQVVRLVPGAYLEYKSALLN----EC----HK-QGGLRLAQARALIKIDVNKTRKIYDFLIREGYI 87 (90)
T ss_dssp TSCHHHHHHHHHTTCCHHHHHHHHHHHHH----HH----HH-HSCCCHHHHHTTSSSSSHHHHHHHHHHHHTTSS
T ss_pred hcCHHHHHHHHHhCCCHHHHHHHHHHHHH----HH----HH-cCCCcHHHHHHHHcccHHHHHHHHHHHHHcCCC
Confidence 34444434445566666666654444433 22 12 24589999999999983 34677888889996
No 57
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=20.92 E-value=71 Score=17.63 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=21.0
Q ss_pred ccHHHHHhhhCCCCHHHHHHHHhhcCC
Q psy13230 96 ISVGDTAQKLHIGSEKQMVEFGKKVKN 122 (132)
Q Consensus 96 Lsl~~a~~LL~~~s~~el~~Fa~ergW 122 (132)
+.+.+.++-|+.+ .+++.++.++.|=
T Consensus 3 ~rv~~lAkel~~~-~k~l~~~l~~~g~ 28 (49)
T 1nd9_A 3 VTIKTLAAERQTS-VERLVQQFADAGI 28 (49)
T ss_dssp ECTTHHHHHHSSS-HHHHHHHHHHHTS
T ss_pred ccHHHHHHHHCcC-HHHHHHHHHHcCC
Confidence 5678899999987 8888888877664
No 58
>2lc0_A Putative uncharacterized protein TB39.8; FHAA, kinase substrate, protein binding; NMR {Mycobacterium tuberculosis}
Probab=20.82 E-value=42 Score=23.86 Aligned_cols=33 Identities=9% Similarity=0.014 Sum_probs=24.2
Q ss_pred cccHHHHHhhhCCCC--H----HHHHHHHhhcCCeeece
Q psy13230 95 VISVGDTAQKLHIGS--E----KQMVEFGKKVKNIVYFY 127 (132)
Q Consensus 95 sLsl~~a~~LL~~~s--~----~el~~Fa~ergW~vd~~ 127 (132)
.|+-+|..+|--+.. . +.+.++|.++||++.+.
T Consensus 65 ~Ls~~D~~~l~~~~~~l~~el~~~l~~~a~~qgy~~~G~ 103 (132)
T 2lc0_A 65 TLGVHDFEKLGADPELKSTGFARDLADYIQEQGWQTYGD 103 (132)
T ss_dssp EEEHHHHHHHCSCSHHHHHHHHHHHHHHHHHHTCBCSSC
T ss_pred EeCHHHHHHHHhhhHHHHHHHHHHHHHHHHHCCCeecCC
Confidence 678888888877763 2 34566788899998764
No 59
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=20.59 E-value=1.9e+02 Score=19.04 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=42.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHh---hcCCee
Q psy13230 68 PRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGK---KVKNIV 124 (132)
Q Consensus 68 ~~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~---ergW~v 124 (132)
+....+...|.+..|.+|...+.+ ...++..+.++.++++ ...+....+ +.||..
T Consensus 30 ~~~~~~~~al~~~~rl~IL~~L~~-~~~~s~~eLa~~l~is-~stvs~~L~~L~~~Glv~ 87 (122)
T 1u2w_A 30 SGVSQILKAIADENRAKITYALCQ-DEELCVCDIANILGVT-IANASHHLRTLYKQGVVN 87 (122)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHH-SSCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH-CCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeE
Confidence 456677888899999999999864 4679999999999997 666655543 468764
No 60
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=20.18 E-value=63 Score=21.95 Aligned_cols=16 Identities=6% Similarity=0.131 Sum_probs=13.6
Q ss_pred HHHHHHHHhhcCCeee
Q psy13230 110 EKQMVEFGKKVKNIVY 125 (132)
Q Consensus 110 ~~el~~Fa~ergW~vd 125 (132)
.+.+.+||+++||.+.
T Consensus 27 ~~~l~~~a~~~g~~~~ 42 (138)
T 3bvp_A 27 IDRLTKYAEAMGWQVS 42 (138)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHCCCEEE
Confidence 4678899999999985
No 61
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=20.08 E-value=1.8e+02 Score=22.08 Aligned_cols=83 Identities=12% Similarity=0.074 Sum_probs=48.8
Q ss_pred HHHHhccCChhHHHHHHhhhchhhhHHhccCCCCCccHHHHHHHHHHHHHHHHHHhH-------HHhcCcccHHHHHhhh
Q psy13230 33 LLYLLSQNRVAEFHMELERIQYEDMIFLAKDGVPSPRYNAFMETLIDTTRNEIASCI-------EKAYTVISVGDTAQKL 105 (132)
Q Consensus 33 LL~LLsqnriaeFHteLE~l~~~~~V~~~~~~vP~~~y~~Fm~~L~~TIR~eIA~ci-------EkAY~sLsl~~a~~LL 105 (132)
+..+|..++.+++...|+.+++.+. ...=..+|.++-..+.+.|-...+.++...+ ..--+.++.++++.++
T Consensus 15 l~~~l~~~~~~~~~~~l~~l~~~d~-a~~l~~L~~~~~~~v~~~l~~~~~~~vl~~l~~~~~~~~~ll~~l~~d~~~~ll 93 (286)
T 2oux_A 15 LLETLKNQQMNEFRELFLALHIYEQ-GQFYQSLDEKDRQHLYNYLSPKELADMFDVIEEDNENMKDYLAEMRPSYAADML 93 (286)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCHHHH-HHHHTTSCHHHHHHHHHHSCHHHHHHHHTTSCTTSSSTTHHHHHSCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhCCHHHH-HHHHHhCCHHHHHHHHHhCCHHHHHHHHHhccCCHHHHHHHHHhCCHHHHHHHH
Confidence 3356778888888888988888765 1111345555656666666666666666555 2223455666666665
Q ss_pred CCCCHHHHHHH
Q psy13230 106 HIGSEKQMVEF 116 (132)
Q Consensus 106 ~~~s~~el~~F 116 (132)
.-=+.++..++
T Consensus 94 ~~l~~d~~~~l 104 (286)
T 2oux_A 94 AEMYTDNAVDL 104 (286)
T ss_dssp TTSCHHHHHHH
T ss_pred HhCCHHHHHHH
Confidence 43334444444
Done!