RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13230
         (132 letters)



>d1frfs_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit
           {Desulfovibrio fructosovorans [TaxId: 878]}
          Length = 261

 Score = 27.2 bits (60), Expect = 0.68
 Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 7/96 (7%)

Query: 13  SLSFSRVPESPYKNEMLG-LNLLY--LLSQNRVAEFHMELERIQ--YEDMIFLAKDGVPS 67
           + +  R  +      +L  ++L Y   +           L       +    + + G+P+
Sbjct: 18  TEAAIRTIKPYIDALILDTISLDYQETIMAAAGETSEAALHEALEGKDGYYLVVEGGLPT 77

Query: 68  PRYNAFMETLIDTTRNEIAS-CIEKAYTVISVGDTA 102
                    +      E       KA  +I +G  +
Sbjct: 78  ID-GGQWGMVAGHPMIETCKKAAAKAKGIICIGTCS 112


>d1yq9a1 e.19.1.1 (A:4-264) Nickel-iron hydrogenase, small subunit
           {Desulfovibrio gigas [TaxId: 879]}
          Length = 261

 Score = 26.1 bits (57), Expect = 1.3
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 5/94 (5%)

Query: 13  SLSFSRVPESPYKNEMLG-LNLLY--LLSQNRVAEFHMELERIQYEDMIFLAKDGVPSPR 69
           S S  R  +      +L  +++ Y   L           L      D + + + G+P   
Sbjct: 18  SESVLRTVDPYVDELILDVISMDYHETLMAGAGHAVEEALHEAIKGDFVCVIEGGIPMGD 77

Query: 70  YNAFMETLIDTTRNEIASCI-EKAYTVISVGDTA 102
              +   +      +I + +  KA  VI++G  A
Sbjct: 78  -GGYWGKVGGRNMYDICAEVAPKAKAVIAIGTCA 110


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.383 

Gapped
Lambda     K      H
   0.267   0.0577    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 465,388
Number of extensions: 19372
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 3
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.6 bits)