Query psy13231
Match_columns 100
No_of_seqs 105 out of 497
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 23:28:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13231.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13231hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3913|consensus 99.9 2.1E-25 4.6E-30 176.4 5.4 72 26-100 45-116 (356)
2 PF00110 wnt: wnt family; Int 99.9 2.2E-25 4.8E-30 173.6 -0.7 70 28-100 1-71 (310)
3 smart00097 WNT1 found in Wnt-1 99.9 4.7E-23 1E-27 160.6 5.5 64 37-100 4-67 (305)
4 PLN02277 H(+) -translocating i 68.7 5.2 0.00011 35.3 3.1 23 52-74 561-583 (730)
5 TIGR01104 V_PPase vacuolar-typ 67.5 5.6 0.00012 35.0 3.0 23 52-74 529-551 (697)
6 PRK00733 hppA membrane-bound p 63.4 8 0.00017 33.9 3.2 24 52-75 504-527 (666)
7 PLN02255 H(+) -translocating i 60.6 8.8 0.00019 34.1 3.0 23 52-74 592-614 (765)
8 PF03030 H_PPase: Inorganic H+ 59.3 8.4 0.00018 33.8 2.6 24 52-75 529-552 (682)
9 COG3728 XtmA Phage terminase, 37.8 20 0.00042 26.5 1.3 26 37-62 2-27 (179)
10 PF08058 NPCC: Nuclear pore co 36.4 28 0.0006 24.5 1.9 38 4-51 89-126 (144)
11 PF14483 Cut8_M: Cut8 dimerisa 30.5 31 0.00067 19.1 1.1 22 37-58 9-35 (38)
12 PF06345 Drf_DAD: DRF Autoregu 28.1 47 0.001 14.9 1.2 13 51-63 1-13 (15)
13 PF03592 Terminase_2: Terminas 26.7 22 0.00048 24.2 0.1 15 38-52 1-15 (144)
14 KOG4114|consensus 23.4 1.1E+02 0.0024 19.5 2.8 30 43-72 29-60 (73)
15 PF08688 ASD1: Apx/Shroom doma 21.8 50 0.0011 24.5 1.1 27 27-57 123-149 (182)
16 KOG3588|consensus 20.8 58 0.0013 27.3 1.4 28 20-52 434-461 (494)
17 PF04418 DUF543: Domain of unk 20.5 52 0.0011 20.9 0.9 16 57-72 60-75 (75)
No 1
>KOG3913|consensus
Probab=99.91 E-value=2.1e-25 Score=176.37 Aligned_cols=72 Identities=31% Similarity=0.555 Sum_probs=68.7
Q ss_pred cccccccccccCCCHHHHHHHhcccchHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCcccccccCCCCCCC
Q psy13231 26 PNDCRRARMEYGFSKGQTKICKGWTEIMPHVTKAAYLAANTCTTLFQDRRWNCSSLFLTPKLTPDLITAHSEAEV 100 (100)
Q Consensus 26 ~~~C~~~~~~~gl~~~Q~~lC~~~p~lm~~i~~G~~~ai~ECq~QF~~~RWNCs~~~~~~~~~~~l~~gtREtAf 100 (100)
..+|+.++ ||+++|+++|+++|++|++|.+|+++||.|||+||+++|||||+.+..+.|++++++|+|||||
T Consensus 45 ~~~C~~l~---gL~~~Q~~~Cr~~p~~~~sv~~G~~~~i~ECq~QFr~~RWNCs~~~~~~~~g~~l~~g~REsAF 116 (356)
T KOG3913|consen 45 KPLCDNLP---GLSPRQRRLCRRNPDVMPSVAEGAREGIQECQFQFRFRRWNCSTLDQLPVFGPLLSRGTRETAF 116 (356)
T ss_pred ccchhhcc---ccCHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhhccCCCCCccccccchhhcccchHHHH
Confidence 44899999 9999999999999999999999999999999999999999999987667899999999999998
No 2
>PF00110 wnt: wnt family; InterPro: IPR005817 Wnt proteins constitute a large family of secreted molecules that are involved in intercellular signalling during development. The name derives from the first 2 members of the family to be discovered: int-1 (mouse) and wingless (Drosophila) []. It is now recognised that Wnt signalling controls many cell fate decisions in a variety of different organisms, including mammals []. Wnt signalling has been implicated in tumourigenesis, early mesodermal patterning of the embryo, morphogenesis of the brain and kidneys, regulation of mammary gland proliferation and Alzheimer's disease [, ]. Wnt-mediated signalling is believed to proceed initially through binding to cell surface receptors of the frizzled family; the signal is subsequently transduced through several cytoplasmic components to B-catenin, which enters the nucleus and activates the transcription of several genes important in development []. Several non-canonical Wnt signalling pathways have also been elucidated that act independently of B-catenin. Canonical and noncanonical Wnt signaling branches are highly interconnected, and cross-regulate each other []. Members of the Wnt gene family are defined by their sequence similarity to mouse Wnt-1 and Wingless in Drosophila. They encode proteins of ~350-400 residues in length, with orthologues identified in several, mostly vertebrate, species. Very little is known about the structure of Wnts as they are notoriously insoluble, but they share the following features characteristics of secretory proteins: a signal peptide, several potential N-glycosylation sites and 22 conserved cysteines [] that are probably involved in disulphide bonds. The Wnt proteins seem to adhere to the plasma membrane of the secreting cells and are therefore likely to signal over only few cell diameters. Fifteen major Wnt gene families have been identified in vertebrates, with multiple subtypes within some classes. In humans, 19 Wnt proteins have been identified that share 27% to 83% amino-acid sequence identity and a conserved pattern of 23 or 24 cysteine residues []. Wnt genes are highly conserved between vertebrate species sharing overall sequence identity and gene structure, and are slightly less conserved between vertebrates and invertebrates.; GO: 0005102 receptor binding, 0007275 multicellular organismal development, 0016055 Wnt receptor signaling pathway, 0005576 extracellular region; PDB: 4F0A_B.
Probab=99.90 E-value=2.2e-25 Score=173.63 Aligned_cols=70 Identities=30% Similarity=0.672 Sum_probs=38.8
Q ss_pred cccccccccCCCHHHHHHHhcccchHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccc-ccccCCCCCCC
Q psy13231 28 DCRRARMEYGFSKGQTKICKGWTEIMPHVTKAAYLAANTCTTLFQDRRWNCSSLFLTPKLTP-DLITAHSEAEV 100 (100)
Q Consensus 28 ~C~~~~~~~gl~~~Q~~lC~~~p~lm~~i~~G~~~ai~ECq~QF~~~RWNCs~~~~~~~~~~-~l~~gtREtAf 100 (100)
+|++++ ||+++|+++|+++|++|++|++|+++|++|||+||+++|||||+....+.|++ ++..|||||||
T Consensus 1 iC~~~~---gL~~~Q~~~C~~~p~~m~~i~~G~~~ai~ECq~QF~~~RWNCs~~~~~~~f~~~~~~~gtrE~Af 71 (310)
T PF00110_consen 1 ICDKIP---GLTKRQRRLCRRNPDLMPSIAEGAKMAIEECQHQFRNRRWNCSTVDNNPVFGPPILKKGTRETAF 71 (310)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHTTTSSS-----T-THHHH-TT--S--HHHHH
T ss_pred CCcccc---cccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccccccCccccee
Confidence 699999 99999999999999999999999999999999999999999998875567887 99999999997
No 3
>smart00097 WNT1 found in Wnt-1.
Probab=99.88 E-value=4.7e-23 Score=160.61 Aligned_cols=64 Identities=28% Similarity=0.513 Sum_probs=61.2
Q ss_pred CCCHHHHHHHhcccchHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCcccccccCCCCCCC
Q psy13231 37 GFSKGQTKICKGWTEIMPHVTKAAYLAANTCTTLFQDRRWNCSSLFLTPKLTPDLITAHSEAEV 100 (100)
Q Consensus 37 gl~~~Q~~lC~~~p~lm~~i~~G~~~ai~ECq~QF~~~RWNCs~~~~~~~~~~~l~~gtREtAf 100 (100)
||+++|+++|+++|++|++|++|+++|++|||+||+++|||||+....+.|++++.+|||||||
T Consensus 4 ~l~~~Q~~~C~~~~~~~~~v~~g~~~ai~ECq~QF~~~rWNCs~~~~~~~~~~~l~~~trEtAf 67 (305)
T smart00097 4 GLSRRQRRLCRANPDVMISVAEGAQEGIEECQHQFRFRRWNCSTLDNASVFGKVLRQGTRETAF 67 (305)
T ss_pred ccCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCcCCcccccccccccchHHH
Confidence 8999999999999999999999999999999999999999999876667899999999999998
No 4
>PLN02277 H(+) -translocating inorganic pyrophosphatase
Probab=68.66 E-value=5.2 Score=35.31 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcccC
Q psy13231 52 IMPHVTKAAYLAANTCTTLFQDR 74 (100)
Q Consensus 52 lm~~i~~G~~~ai~ECq~QF~~~ 74 (100)
.|.+|.+++..-++||++|||..
T Consensus 561 ~m~AVg~aA~~mVeEVRRQFrei 583 (730)
T PLN02277 561 ACAAVGRTAQEVVNEVRRQFAER 583 (730)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 48899999999999999999875
No 5
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=67.47 E-value=5.6 Score=34.95 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcccC
Q psy13231 52 IMPHVTKAAYLAANTCTTLFQDR 74 (100)
Q Consensus 52 lm~~i~~G~~~ai~ECq~QF~~~ 74 (100)
.|.+|.+++..-++||++|||..
T Consensus 529 ~m~AVg~aA~~mV~EVRRQFrei 551 (697)
T TIGR01104 529 TMKSVGRAALKMVEEVRRQFNTI 551 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 48899999999999999999875
No 6
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=63.36 E-value=8 Score=33.86 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCC
Q psy13231 52 IMPHVTKAAYLAANTCTTLFQDRR 75 (100)
Q Consensus 52 lm~~i~~G~~~ai~ECq~QF~~~R 75 (100)
.|.+|.+++...++|+++|||..+
T Consensus 504 ~m~AVg~aA~~mV~EVRrQFre~p 527 (666)
T PRK00733 504 AMTAVGRAAGAMVEEVRRQFREIP 527 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCc
Confidence 478999999999999999999764
No 7
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=60.64 E-value=8.8 Score=34.09 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcccC
Q psy13231 52 IMPHVTKAAYLAANTCTTLFQDR 74 (100)
Q Consensus 52 lm~~i~~G~~~ai~ECq~QF~~~ 74 (100)
.|.+|.+++..-++|+++|||..
T Consensus 592 ~m~AVg~aA~~mV~EVRRQFrei 614 (765)
T PLN02255 592 TMKSVGSAALKMVEEVRRQFNTI 614 (765)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Confidence 48899999999999999999875
No 8
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=59.28 E-value=8.4 Score=33.80 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcccCC
Q psy13231 52 IMPHVTKAAYLAANTCTTLFQDRR 75 (100)
Q Consensus 52 lm~~i~~G~~~ai~ECq~QF~~~R 75 (100)
.|.+|.+++..-++|+++|||..+
T Consensus 529 ~m~aVg~aA~~mV~EvRrQFre~p 552 (682)
T PF03030_consen 529 TMKAVGRAAGKMVEEVRRQFREIP 552 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 478999999999999999999874
No 9
>COG3728 XtmA Phage terminase, small subunit [DNA replication, recombination, and repair]
Probab=37.79 E-value=20 Score=26.52 Aligned_cols=26 Identities=8% Similarity=0.144 Sum_probs=16.5
Q ss_pred CCCHHHHHHHhcccchHHHHHHHHHH
Q psy13231 37 GFSKGQTKICKGWTEIMPHVTKAAYL 62 (100)
Q Consensus 37 gl~~~Q~~lC~~~p~lm~~i~~G~~~ 62 (100)
-||.+|++||..+-.--++-..|++.
T Consensus 2 ~Lt~kQrrF~~eyi~~~naT~sA~~A 27 (179)
T COG3728 2 ELTEKQRRFVDEYIKTFNATQSAIKA 27 (179)
T ss_pred cccHHHHHHHHHHHHcccHhHHHHHh
Confidence 38999999997655444443344433
No 10
>PF08058 NPCC: Nuclear pore complex component; InterPro: IPR012578 Proteins containing this domain are components of the nuclear pore complex []. One member of this domain is Nucleoporin POM34 (Q12445 from SWISSPROT) which is thought to have a role in anchoring peripheral Nups into the pore and mediating pore formation [].
Probab=36.43 E-value=28 Score=24.48 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=27.1
Q ss_pred eecccccccccccCCCCcCCCCcccccccccccCCCHHHHHHHhcccc
Q psy13231 4 VDFHNLQPSEGLQGSTNLNWTSPNDCRRARMEYGFSKGQTKICKGWTE 51 (100)
Q Consensus 4 ~~~~~~~~~~~~~~~s~~~~~~~~~C~~~~~~~gl~~~Q~~lC~~~p~ 51 (100)
+-.-||+.+++.. +.++..|..++ ||++|+++.--.|.
T Consensus 89 i~~~NIv~al~~L------~r~~D~~~DLP----LT~~QR~LLGL~~~ 126 (144)
T PF08058_consen 89 IFLLNIVIALWPL------FRPKDDCSDLP----LTPKQRKLLGLDPS 126 (144)
T ss_pred HHHHHHHHHHHHH------cCCcCCcccCC----CCHHHHHHcCCCCC
Confidence 4455777655543 23467899998 99999999876666
No 11
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=30.49 E-value=31 Score=19.09 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=15.6
Q ss_pred CCCHHHH-----HHHhcccchHHHHHH
Q psy13231 37 GFSKGQT-----KICKGWTEIMPHVTK 58 (100)
Q Consensus 37 gl~~~Q~-----~lC~~~p~lm~~i~~ 58 (100)
+|.+.|. ++|.+||++-..|..
T Consensus 9 ~Ld~~qL~~lL~~l~~~HPei~~~i~~ 35 (38)
T PF14483_consen 9 TLDKDQLQSLLQSLCERHPEIQQEIRS 35 (38)
T ss_dssp TS-HHHHHHHHHHHHHHSTHHHHHHHT
T ss_pred HcCHHHHHHHHHHHHHhChhHHHHHHh
Confidence 4555554 479999999888764
No 12
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=28.14 E-value=47 Score=14.90 Aligned_cols=13 Identities=15% Similarity=0.158 Sum_probs=8.9
Q ss_pred chHHHHHHHHHHH
Q psy13231 51 EIMPHVTKAAYLA 63 (100)
Q Consensus 51 ~lm~~i~~G~~~a 63 (100)
++|.++.++++.+
T Consensus 1 gvmdsllealqtg 13 (15)
T PF06345_consen 1 GVMDSLLEALQTG 13 (15)
T ss_dssp -HHHHHHHHHHHS
T ss_pred CcHHHHHHHHHcc
Confidence 3678888887654
No 13
>PF03592 Terminase_2: Terminase small subunit ; InterPro: IPR005335 Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].; GO: 0006323 DNA packaging; PDB: 3ZQP_B 2CMP_A 3ZQO_C 3ZQN_B 3ZQQ_B 3ZQM_D.
Probab=26.75 E-value=22 Score=24.19 Aligned_cols=15 Identities=7% Similarity=0.184 Sum_probs=10.2
Q ss_pred CCHHHHHHHhcccch
Q psy13231 38 FSKGQTKICKGWTEI 52 (100)
Q Consensus 38 l~~~Q~~lC~~~p~l 52 (100)
||++|+.||..+..-
T Consensus 1 LT~kQ~~F~~~Yl~~ 15 (144)
T PF03592_consen 1 LTPKQKRFVDEYLKD 15 (144)
T ss_dssp --HHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhc
Confidence 789999999765553
No 14
>KOG4114|consensus
Probab=23.36 E-value=1.1e+02 Score=19.47 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=25.0
Q ss_pred HHHHhcccch--HHHHHHHHHHHHHHHHHhcc
Q psy13231 43 TKICKGWTEI--MPHVTKAAYLAANTCTTLFQ 72 (100)
Q Consensus 43 ~~lC~~~p~l--m~~i~~G~~~ai~ECq~QF~ 72 (100)
-+-|..+|+. ++..-.+...+..||+.+.-
T Consensus 29 ~reCldn~~~~~vPeeC~al~~af~dCKRslv 60 (73)
T KOG4114|consen 29 PRECLDNPELKDVPEECIALMKAFLDCKRSLV 60 (73)
T ss_pred HHHHhcCCccccCcHHHHHHHHHHHHHHHHHH
Confidence 3469999998 88888889999999998753
No 15
>PF08688 ASD1: Apx/Shroom domain ASD1; InterPro: IPR014800 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. This region is found in the actin binding protein Shroom. ASD1 has been implicated directly in F-actin binding.
Probab=21.77 E-value=50 Score=24.46 Aligned_cols=27 Identities=26% Similarity=0.128 Sum_probs=23.9
Q ss_pred ccccccccccCCCHHHHHHHhcccchHHHHH
Q psy13231 27 NDCRRARMEYGFSKGQTKICKGWTEIMPHVT 57 (100)
Q Consensus 27 ~~C~~~~~~~gl~~~Q~~lC~~~p~lm~~i~ 57 (100)
.+|.+-+ ||..|+..|...|+=|+-|.
T Consensus 123 RiGgRkR----lTaEQKkrSYSEPEKmneVG 149 (182)
T PF08688_consen 123 RIGGRKR----LTAEQKKRSYSEPEKMNEVG 149 (182)
T ss_pred ccccccc----CCHHHhhhccCCchhhhhcc
Confidence 4777766 99999999999999999886
No 16
>KOG3588|consensus
Probab=20.77 E-value=58 Score=27.31 Aligned_cols=28 Identities=18% Similarity=0.460 Sum_probs=21.5
Q ss_pred CcCCCCcccccccccccCCCHHHHHHHhcccch
Q psy13231 20 NLNWTSPNDCRRARMEYGFSKGQTKICKGWTEI 52 (100)
Q Consensus 20 ~~~~~~~~~C~~~~~~~gl~~~Q~~lC~~~p~l 52 (100)
-.++..+..|+. .|++.|.++|......
T Consensus 434 l~H~~H~~~C~~-----~l~p~Qy~mC~~SkA~ 461 (494)
T KOG3588|consen 434 LFHLWHPKRCDD-----NLTPEQYRMCIGSKAM 461 (494)
T ss_pred eEEeecccccCC-----CCCHHHHHHHhhhhhh
Confidence 346677889975 6999999999776543
No 17
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=20.52 E-value=52 Score=20.89 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhcc
Q psy13231 57 TKAAYLAANTCTTLFQ 72 (100)
Q Consensus 57 ~~G~~~ai~ECq~QF~ 72 (100)
.-|+=+|..+|++.|+
T Consensus 60 G~G~G~aY~~c~~~f~ 75 (75)
T PF04418_consen 60 GFGIGMAYSECQRDFN 75 (75)
T ss_pred ccccchhHHHHHHhcC
Confidence 4467788899999884
Done!