Query psy13231
Match_columns 100
No_of_seqs 105 out of 497
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 23:28:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f0a_B Protein WNT-8, XWNT-8; 99.7 1.5E-18 5E-23 134.9 0.6 52 48-100 14-66 (316)
2 2cmp_A G1P, terminase small su 53.4 3.5 0.00012 24.5 0.5 15 37-51 8-22 (63)
3 4a01_A Proton pyrophosphatase; 50.4 9 0.00031 32.8 2.6 23 52-74 593-615 (766)
4 4av3_A K(+)-stimulated pyropho 48.3 5.7 0.0002 33.9 1.1 22 53-74 572-593 (735)
5 3zqp_A Terminase small subunit 33.1 9.1 0.00031 26.8 0.0 17 37-53 24-40 (164)
6 4a1s_C RE60102P, INSC; cell cy 23.8 23 0.00077 19.2 0.5 8 73-80 16-23 (40)
7 2lqx_A Trypsin inhibitor BWI-2 25.9 21 0.00073 19.1 0.0 17 61-77 5-21 (41)
8 2vqc_A Hypothetical 13.2 kDa p 18.5 5.7 0.00019 25.9 -3.1 10 66-75 63-72 (118)
9 2c5l_C Phosphoinositide-specif 16.6 35 0.0012 22.6 0.4 11 1-11 7-17 (117)
10 3r8n_R 30S ribosomal protein S 14.7 1.3E+02 0.0046 17.0 2.5 12 30-44 23-34 (55)
No 1
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex, frizzled, fatty acylation, glycosylation, signaling protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus laevis}
Probab=99.70 E-value=1.5e-18 Score=134.88 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=45.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccc-ccccCCCCCCC
Q psy13231 48 GWTEIMPHVTKAAYLAANTCTTLFQDRRWNCSSLFLTPKLTP-DLITAHSEAEV 100 (100)
Q Consensus 48 ~~p~lm~~i~~G~~~ai~ECq~QF~~~RWNCs~~~~~~~~~~-~l~~gtREtAf 100 (100)
++|++|++|++|+++||+|||+||+++|||||... .+.+++ +|.+|||||||
T Consensus 14 ~~~~~~~~v~~Ga~~~i~ECq~QFr~~RWNCs~~~-~~~~~~~~l~~g~REtAF 66 (316)
T 4f0a_B 14 AYLTYSASVAVGAQNGIEECKYQFAWERWNCPEST-LQLATHNGLRSATRETSF 66 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCCT-THHHHCTTCCSCCHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCc-cccCCcccccCCCHHHHH
Confidence 57789999999999999999999999999999643 334555 68999999997
No 2
>2cmp_A G1P, terminase small subunit; DNA packaging, DNA binding DO; 1.58A {Bacteriophage SF6}
Probab=53.39 E-value=3.5 Score=24.45 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=12.2
Q ss_pred CCCHHHHHHHhcccc
Q psy13231 37 GFSKGQTKICKGWTE 51 (100)
Q Consensus 37 gl~~~Q~~lC~~~p~ 51 (100)
.||++|++||..+..
T Consensus 8 ~LT~kQ~~F~~~Yi~ 22 (63)
T 2cmp_A 8 KLSPKQERFIEEYFI 22 (63)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh
Confidence 599999999976533
No 3
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=50.37 E-value=9 Score=32.83 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcccC
Q psy13231 52 IMPHVTKAAYLAANTCTTLFQDR 74 (100)
Q Consensus 52 lm~~i~~G~~~ai~ECq~QF~~~ 74 (100)
.|.+|.+++..-++|+++|||..
T Consensus 593 tm~AVg~AA~~mV~EVRRQFrei 615 (766)
T 4a01_A 593 TMKSVGSAALKMVEEVRRQFNTI 615 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 47899999999999999999875
No 4
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=48.34 E-value=5.7 Score=33.86 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhcccC
Q psy13231 53 MPHVTKAAYLAANTCTTLFQDR 74 (100)
Q Consensus 53 m~~i~~G~~~ai~ECq~QF~~~ 74 (100)
|++|.+++...++|+++|||..
T Consensus 572 m~AVgrAA~~mV~EVRRQFrei 593 (735)
T 4av3_A 572 ISAVTKAAMKMVDEIRRQAREI 593 (735)
T ss_dssp HHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHhhC
Confidence 8899999999999999999864
No 5
>3zqp_A Terminase small subunit; DNA-binding protein, DNA packaging; 3.00A {Bacillus phage SF6} PDB: 3zqq_A
Probab=33.07 E-value=9.1 Score=26.77 Aligned_cols=17 Identities=12% Similarity=0.010 Sum_probs=0.0
Q ss_pred CCCHHHHHHHhcccchH
Q psy13231 37 GFSKGQTKICKGWTEIM 53 (100)
Q Consensus 37 gl~~~Q~~lC~~~p~lm 53 (100)
.||++|++||..+..-.
T Consensus 24 ~LT~KQ~~F~~eYi~~~ 40 (164)
T 3zqp_A 24 KLSPKQERFIEEYFIND 40 (164)
T ss_dssp -----------------
T ss_pred cCCHHHHHHHHHHHhcC
Confidence 69999999998765443
No 6
>4a1s_C RE60102P, INSC; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=23.84 E-value=23 Score=19.15 Aligned_cols=8 Identities=25% Similarity=0.892 Sum_probs=6.2
Q ss_pred cCCCCCCC
Q psy13231 73 DRRWNCSS 80 (100)
Q Consensus 73 ~~RWNCs~ 80 (100)
..||||--
T Consensus 16 eQRW~~e~ 23 (40)
T 4a1s_C 16 EQRWAGEP 23 (40)
T ss_dssp HHTTCCCC
T ss_pred hccccCCh
Confidence 46999974
No 7
>2lqx_A Trypsin inhibitor BWI-2C; helical hairpin, hydrolase inhibitor; NMR {Fagopyrum esculentum}
Probab=25.88 E-value=21 Score=19.09 Aligned_cols=17 Identities=18% Similarity=0.595 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcccCCCC
Q psy13231 61 YLAANTCTTLFQDRRWN 77 (100)
Q Consensus 61 ~~ai~ECq~QF~~~RWN 77 (100)
+.-++|||.--+-.||.
T Consensus 5 qqeleecqnvcrmkrws 21 (41)
T 2lqx_A 5 QQELEECQNVCRMKRWS 21 (41)
Confidence 34578999999999994
No 8
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=18.50 E-value=5.7 Score=25.91 Aligned_cols=10 Identities=20% Similarity=0.863 Sum_probs=8.5
Q ss_pred HHHHhcccCC
Q psy13231 66 TCTTLFQDRR 75 (100)
Q Consensus 66 ECq~QF~~~R 75 (100)
||.-|.+++|
T Consensus 63 ecevq~knr~ 72 (118)
T 2vqc_A 63 ECEVQYKNRK 72 (118)
T ss_dssp TEEEEECSSC
T ss_pred hhheeecchh
Confidence 7888988886
No 9
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=16.62 E-value=35 Score=22.55 Aligned_cols=11 Identities=36% Similarity=0.902 Sum_probs=9.9
Q ss_pred Cceeecccccc
Q psy13231 1 MFLVDFHNLQP 11 (100)
Q Consensus 1 ~~~~~~~~~~~ 11 (100)
||+||.|||.|
T Consensus 7 tf~v~V~~v~p 17 (117)
T 2c5l_C 7 SFFVQVHDVSP 17 (117)
T ss_dssp EEEEEEESCCS
T ss_pred eEEEEEecCCC
Confidence 58999999987
No 10
>3r8n_R 30S ribosomal protein S18; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_R 3fih_R* 3iy8_R 3j18_R* 2wwl_R 3oar_R 3oaq_R 3ofb_R 3ofa_R 3ofp_R 3ofx_R 3ofy_R 3ofo_R 3r8o_R 4a2i_R 4gd1_R 4gd2_R
Probab=14.69 E-value=1.3e+02 Score=16.97 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=8.2
Q ss_pred cccccccCCCHHHHH
Q psy13231 30 RRARMEYGFSKGQTK 44 (100)
Q Consensus 30 ~~~~~~~gl~~~Q~~ 44 (100)
++.. |+..+|++
T Consensus 23 rr~T---Glc~k~QR 34 (55)
T 3r8n_R 23 SRIT---GTRAKYQR 34 (55)
T ss_dssp HHHH---CCCHHHHH
T ss_pred cccc---ccCHHHHH
Confidence 5566 78777665
Done!