Query psy13231
Match_columns 100
No_of_seqs 105 out of 497
Neff 5.8
Searched_HMMs 13730
Date Fri Aug 16 23:29:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13231.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13231hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vqca1 a.4.5.78 (A:4-73) F-11 35.6 0.74 5.4E-05 26.3 -3.1 24 38-75 40-63 (70)
2 d2qalr1 a.4.8.1 (R:19-73) Ribo 16.1 79 0.0058 16.5 3.5 12 30-44 23-34 (55)
3 d1h2vc2 a.118.1.14 (C:291-480) 10.1 89 0.0065 20.5 2.7 25 38-62 82-107 (190)
4 d2jpoa1 a.39.2.1 (A:1-142) Mot 10.0 36 0.0026 20.6 0.5 21 50-70 2-22 (142)
5 d2fqma1 d.378.1.1 (A:107-171) 9.7 93 0.0068 17.0 2.2 24 35-61 21-44 (65)
6 d1dqea_ a.39.2.1 (A:) Moth phe 9.2 67 0.0048 19.1 1.6 21 50-70 2-22 (137)
7 d2h1ca1 c.120.1.1 (A:1-138) Tr 9.1 39 0.0028 19.4 0.4 9 1-9 1-9 (138)
8 d2ux9a1 d.230.2.1 (A:2-67) Unc 8.7 61 0.0045 17.8 1.1 22 55-76 16-37 (66)
9 d1xeqa1 a.16.1.1 (A:15-103) N- 8.3 75 0.0054 18.1 1.4 17 59-75 8-24 (89)
10 d2e1oa1 a.4.1.1 (A:8-64) Homeo 8.3 42 0.003 17.4 0.3 33 38-70 7-45 (57)
No 1
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=35.56 E-value=0.74 Score=26.26 Aligned_cols=24 Identities=17% Similarity=0.641 Sum_probs=14.7
Q ss_pred CCHHHHHHHhcccchHHHHHHHHHHHHHHHHHhcccCC
Q psy13231 38 FSKGQTKICKGWTEIMPHVTKAAYLAANTCTTLFQDRR 75 (100)
Q Consensus 38 l~~~Q~~lC~~~p~lm~~i~~G~~~ai~ECq~QF~~~R 75 (100)
..+.-+.+|.++|| ||.-|.+++|
T Consensus 40 iqr~l~~ice~hpd--------------ecevq~knr~ 63 (70)
T d2vqca1 40 IQRALKAICERHPD--------------ECEVQYKNRK 63 (70)
T ss_dssp HHHHHHHHHHHCTT--------------TEEEEECSSC
T ss_pred HHHHHHHHHhcCCc--------------hhheeeccch
Confidence 33444456666664 6777777765
No 2
>d2qalr1 a.4.8.1 (R:19-73) Ribosomal protein S18 {Escherichia coli [TaxId: 562]}
Probab=16.08 E-value=79 Score=16.48 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=8.7
Q ss_pred cccccccCCCHHHHH
Q psy13231 30 RRARMEYGFSKGQTK 44 (100)
Q Consensus 30 ~~~~~~~gl~~~Q~~ 44 (100)
.+.. |++.+|.+
T Consensus 23 rr~T---gl~~k~Qr 34 (55)
T d2qalr1 23 SRIT---GTRAKYQR 34 (55)
T ss_dssp STTT---CCCHHHHH
T ss_pred CccC---CCCHHHHH
Confidence 5666 88887765
No 3
>d1h2vc2 a.118.1.14 (C:291-480) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.13 E-value=89 Score=20.48 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=18.3
Q ss_pred CCHHHHHHHhcccchHH-HHHHHHHH
Q psy13231 38 FSKGQTKICKGWTEIMP-HVTKAAYL 62 (100)
Q Consensus 38 l~~~Q~~lC~~~p~lm~-~i~~G~~~ 62 (100)
...--.++|+..|+.|+ +++++++.
T Consensus 82 Y~sll~elCK~~P~~ip~v~~~ai~~ 107 (190)
T d1h2vc2 82 YTTLLIELCKLQPGSLPQVLAQATEM 107 (190)
T ss_dssp HHHHHHHHHHHSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 35556889999998775 66776654
No 4
>d2jpoa1 a.39.2.1 (A:1-142) Moth pheromone-binding protein, PBP {Polyphemus moth (Antheraea polyphemus) [TaxId: 7120]}
Probab=10.02 E-value=36 Score=20.62 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=10.9
Q ss_pred cchHHHHHHHHHHHHHHHHHh
Q psy13231 50 TEIMPHVTKAAYLAANTCTTL 70 (100)
Q Consensus 50 p~lm~~i~~G~~~ai~ECq~Q 70 (100)
|++|.-+..+.+.++++|..+
T Consensus 2 ~~~~~~~~~~f~q~~~~C~~e 22 (142)
T d2jpoa1 2 PEIMKNLSNNFGKAMDQCKDE 22 (142)
T ss_dssp CSSCSCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhh
Confidence 444444555555555555543
No 5
>d2fqma1 d.378.1.1 (A:107-171) Phosphoprotein P (M1) {Vesicular stomatitis indiana virus [TaxId: 11277]}
Probab=9.68 E-value=93 Score=16.98 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=15.6
Q ss_pred ccCCCHHHHHHHhcccchHHHHHHHHH
Q psy13231 35 EYGFSKGQTKICKGWTEIMPHVTKAAY 61 (100)
Q Consensus 35 ~~gl~~~Q~~lC~~~p~lm~~i~~G~~ 61 (100)
+.|||..|+. +.-..+++|.+.++
T Consensus 21 P~gLt~~Q~~---QW~~TIeav~qSak 44 (65)
T d2fqma1 21 PEGLSGEQKS---QWMLTIKAVVQSAK 44 (65)
T ss_dssp CSSCCHHHHH---HHHHHHHHHHHHHH
T ss_pred CCCcchHHHH---HHHHHHHHHHhhhc
Confidence 4589999987 44445566655544
No 6
>d1dqea_ a.39.2.1 (A:) Moth pheromone-binding protein, PBP {Silk moth (Bombyx mori) [TaxId: 7091]}
Probab=9.20 E-value=67 Score=19.13 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=15.4
Q ss_pred cchHHHHHHHHHHHHHHHHHh
Q psy13231 50 TEIMPHVTKAAYLAANTCTTL 70 (100)
Q Consensus 50 p~lm~~i~~G~~~ai~ECq~Q 70 (100)
+++|+-+......++++|..+
T Consensus 2 ~~~~~~~~~~~~~~~e~C~~e 22 (137)
T d1dqea_ 2 QEVMKNLSLNFGKALDECKKE 22 (137)
T ss_dssp HHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhH
Confidence 456777777777888888765
No 7
>d2h1ca1 c.120.1.1 (A:1-138) Trafficking protein B {Neisseria gonorrhoeae [TaxId: 485]}
Probab=9.14 E-value=39 Score=19.40 Aligned_cols=9 Identities=33% Similarity=0.571 Sum_probs=6.4
Q ss_pred Cceeecccc
Q psy13231 1 MFLVDFHNL 9 (100)
Q Consensus 1 ~~~~~~~~~ 9 (100)
|+|+||.=+
T Consensus 1 MiLlDTnvl 9 (138)
T d2h1ca1 1 MILLDTNVI 9 (138)
T ss_dssp CEEECHHHH
T ss_pred CEEEecHHH
Confidence 888888433
No 8
>d2ux9a1 d.230.2.1 (A:2-67) Uncharacterized protein TTHA1431 {Thermus thermophilus [TaxId: 274]}
Probab=8.72 E-value=61 Score=17.77 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhcccCCC
Q psy13231 55 HVTKAAYLAANTCTTLFQDRRW 76 (100)
Q Consensus 55 ~i~~G~~~ai~ECq~QF~~~RW 76 (100)
++-+|++.|+.+..+..++=+|
T Consensus 16 S~edAi~~Ai~~AskTl~ni~~ 37 (66)
T d2ux9a1 16 GLEAAIQAALARARKTLRHLDW 37 (66)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEE
T ss_pred CHHHHHHHHHHHhhhCccCcEE
Confidence 5678899999999999888777
No 9
>d1xeqa1 a.16.1.1 (A:15-103) N-terminal, RNA-binding domain of nonstructural protein NS1 {Influenza B virus [TaxId: 11520]}
Probab=8.34 E-value=75 Score=18.10 Aligned_cols=17 Identities=18% Similarity=0.112 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhcccCC
Q psy13231 59 AAYLAANTCTTLFQDRR 75 (100)
Q Consensus 59 G~~~ai~ECq~QF~~~R 75 (100)
-...||-+|-+.|.|+|
T Consensus 8 nfeagil~cy~r~swq~ 24 (89)
T d1xeqa1 8 NFEAGILECYERFSWQR 24 (89)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred ehhhhHHHHHHHhhhcc
Confidence 35678999999999876
No 10
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.32 E-value=42 Score=17.41 Aligned_cols=33 Identities=18% Similarity=0.057 Sum_probs=18.7
Q ss_pred CCHHHHHH------HhcccchHHHHHHHHHHHHHHHHHh
Q psy13231 38 FSKGQTKI------CKGWTEIMPHVTKAAYLAANTCTTL 70 (100)
Q Consensus 38 l~~~Q~~l------C~~~p~lm~~i~~G~~~ai~ECq~Q 70 (100)
+|+.|... -..+|+.-.-..-|..+++.+.|-+
T Consensus 7 ft~~Q~~~Le~~F~~n~yp~~~~r~~LA~~l~L~~~qV~ 45 (57)
T d2e1oa1 7 FSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVK 45 (57)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhh
Confidence 67777653 2346665555555555566665543
Done!