RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13231
         (100 letters)



>gnl|CDD|215724 pfam00110, wnt, wnt family.  Wnt genes have been identified in
          vertebrates and invertebrates but not in plants,
          unicellular eukaryotes or prokaryotes. In humans, 19
          WNT proteins are known. Because of their insolubility
          little is known about Wnt protein structure, but all
          have 23 or 24 Cys residues whose spacing is highly
          conserved. Signal transduction by Wnt proteins
          (including the Wnt/beta-catenin, the Wnt/Ca++, and the
          Wnt/polarity pathway) is mediated by receptors of the
          Frizzled and LDL-receptor-related protein (LRP)
          families.
          Length = 308

 Score = 56.5 bits (137), Expect = 7e-11
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 29 CRRARMEYGFSKGQTKICKGWTEIMPHVTKAAYLAANTCTTLFQDRRWNCSSLFLTPKLT 88
          C +     G S+ Q ++C+   ++M  V + A L    C   F++RRWNCS+L  +    
Sbjct: 2  CSKLP---GLSRKQRRLCRRNPDVMASVGEGARLGIEECQHQFRNRRWNCSTLDSSSVFG 58

Query: 89 PDLITAHSEA 98
            L     E 
Sbjct: 59 KILKRGTRET 68


>gnl|CDD|128408 smart00097, WNT1, found in Wnt-1. 
          Length = 305

 Score = 42.3 bits (100), Expect = 8e-06
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 37 GFSKGQTKICKGWTEIMPHVTKAAYLAANTCTTLFQDRRWNCSSL 81
          G S+ Q ++C+   ++M  V + A      C   F+ RRWNCS+L
Sbjct: 4  GLSRRQRRLCRANPDVMISVAEGAQEGIEECQHQFRFRRWNCSTL 48


>gnl|CDD|183662 PRK12662, PRK12662, putative monovalent cation/H+ antiporter
           subunit D; Reviewed.
          Length = 492

 Score = 25.8 bits (57), Expect = 4.7
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 36  YGFSKGQTKICKGWTEIMPHVTKA 59
           Y F   + + C    + MP +T A
Sbjct: 356 YHFGTTKLEDCLNLWKSMPKITLA 379


>gnl|CDD|221214 pfam11769, DUF3313, Protein of unknown function (DUF3313).  This
          a bacterial family of proteins which are annotated as
          putative lipoproteins.
          Length = 202

 Score = 25.3 bits (56), Expect = 5.5
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 2  FLVDFHNLQPSEGLQGSTNLNWTSPN 27
          FL  +  L+P +   G   L W  P 
Sbjct: 19 FLKSYSGLEPGKSPSGRAVLRWVDPG 44


>gnl|CDD|215399 PLN02748, PLN02748, tRNA dimethylallyltransferase.
          Length = 468

 Score = 24.8 bits (54), Expect = 9.4
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 11  PSEGLQGSTNLNWTSPNDCR 30
           PS+  QG    NW   ++ R
Sbjct: 206 PSKLYQGKAAENWGRISNSR 225


>gnl|CDD|215483 PLN02893, PLN02893, Cellulose synthase-like protein.
          Length = 734

 Score = 25.1 bits (55), Expect = 9.8
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)

Query: 46  CKGWTEIMPHVTKAAYLA---ANTCTTLFQDRRW 76
           C+GW  I  +  + A+L     N    L Q +RW
Sbjct: 457 CEGWKSIFCNPKRPAFLGDSPINLHDVLNQQKRW 490


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.131    0.426 

Gapped
Lambda     K      H
   0.267   0.0725    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,815,237
Number of extensions: 355909
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 8
Length of query: 100
Length of database: 10,937,602
Length adjustment: 66
Effective length of query: 34
Effective length of database: 8,010,238
Effective search space: 272348092
Effective search space used: 272348092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)