RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13231
         (100 letters)



>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex,
          frizzled, fatty acylation, glycosylation, signaling
          protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus
          laevis}
          Length = 316

 Score = 46.1 bits (108), Expect = 2e-07
 Identities = 13/59 (22%), Positives = 16/59 (27%)

Query: 39 SKGQTKICKGWTEIMPHVTKAAYLAANTCTTLFQDRRWNCSSLFLTPKLTPDLITAHSE 97
          +       K +      V   A      C   F   RWNC    L       L +A  E
Sbjct: 5  NNFLMTGPKAYLTYSASVAVGAQNGIEECKYQFAWERWNCPESTLQLATHNGLRSATRE 63


>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
          intracellular signaling cascade, signal transduction;
          NMR {Mus musculus} SCOP: b.36.1.1
          Length = 111

 Score = 25.5 bits (56), Expect = 2.5
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 3/37 (8%)

Query: 12 SEGLQGSTNLNWTSPNDCR--RARMEYGFS-KGQTKI 45
          S G  GS +  W+ P          + GF+ +G T +
Sbjct: 2  SSGSSGSASKRWSPPRGIHFTVEEGDLGFTLRGNTPV 38


>1urj_A Major DNA-binding protein; SSB, ICP8, HSV-1, DNA replication,
           zinc-finger, nuclear protein.; 3.0A {Human herpesvirus
           1} SCOP: e.58.1.1
          Length = 1136

 Score = 25.0 bits (54), Expect = 5.5
 Identities = 18/83 (21%), Positives = 23/83 (27%), Gaps = 17/83 (20%)

Query: 6   FHN---LQPSEGLQGSTNLNWTSPNDCRRARMEYGFSKGQTKICKGWTEIMP-------H 55
           FH    L PS      T L       C RAR  +GFS    +      E           
Sbjct: 97  FHGGRHLDPSTQAPNLTRL-------CERARRHFGFSDYTPRPGDLKHETTGEALCERLG 149

Query: 56  VTKAAYLAANTCTTLFQDRRWNC 78
           +     L     T  F++     
Sbjct: 150 LDPDRALLYLVVTEGFKEAVCIN 172


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.131    0.426 

Gapped
Lambda     K      H
   0.267   0.0430    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,495,736
Number of extensions: 68810
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 3
Length of query: 100
Length of database: 6,701,793
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,859,007
Effective search space: 165206238
Effective search space used: 165206238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.2 bits)