BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13232
(111 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q556Y2|ORN_DICDI Probable oligoribonuclease OS=Dictyostelium discoideum GN=rexo2-1
PE=3 SV=1
Length = 190
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 33 LYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGE 92
++ ++EVL+NMN+WC+EHH SGLT+ VR S +S+EEA+K + +FV K+ P+ G
Sbjct: 59 IHRSDEVLKNMNDWCIEHHGKSGLTEDVRNSKISLEEAEKIMLEFVRKHTDKGICPLAGN 118
Query: 93 --YHTSKELLKDSDHF 106
+ + LLK+ F
Sbjct: 119 TVHEDRRFLLKEMPTF 134
>sp|A4J020|ORN_FRATW Oligoribonuclease OS=Francisella tularensis subsp. tularensis
(strain WY96-3418) GN=orn PE=3 SV=1
Length = 178
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 43/60 (71%)
Query: 32 GLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
+Y +EVL NMNEWC++ H +GLT RV+ S +S E A++++ +F+ K+V +++P+ G
Sbjct: 46 AIYQPDEVLANMNEWCIKTHTETGLTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCG 105
>sp|Q2A5M3|ORN_FRATH Oligoribonuclease OS=Francisella tularensis subsp. holarctica
(strain LVS) GN=orn PE=3 SV=1
Length = 178
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 43/60 (71%)
Query: 32 GLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
+Y +EVL NMNEWC++ H +GLT RV+ S +S E A++++ +F+ K+V +++P+ G
Sbjct: 46 AIYQPDEVLANMNEWCIKTHTETGLTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCG 105
>sp|A7N9M1|ORN_FRATF Oligoribonuclease OS=Francisella tularensis subsp. holarctica
(strain FTNF002-00 / FTA) GN=orn PE=3 SV=1
Length = 178
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 43/60 (71%)
Query: 32 GLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
+Y +EVL NMNEWC++ H +GLT RV+ S +S E A++++ +F+ K+V +++P+ G
Sbjct: 46 AIYQPDEVLANMNEWCIKTHTETGLTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCG 105
>sp|Q5NI61|ORN_FRATT Oligoribonuclease OS=Francisella tularensis subsp. tularensis
(strain SCHU S4 / Schu 4) GN=orn PE=3 SV=1
Length = 178
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 43/60 (71%)
Query: 32 GLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
+Y +EVL NMNEWC++ H +GLT RV+ S +S E A++++ +F+ K+V +++P+ G
Sbjct: 46 AIYQPDEVLANMNEWCIKTHTETGLTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCG 105
>sp|Q14JL3|ORN_FRAT1 Oligoribonuclease OS=Francisella tularensis subsp. tularensis
(strain FSC 198) GN=orn PE=3 SV=1
Length = 178
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 43/60 (71%)
Query: 32 GLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
+Y +EVL NMNEWC++ H +GLT RV+ S +S E A++++ +F+ K+V +++P+ G
Sbjct: 46 AIYQPDEVLANMNEWCIKTHTETGLTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCG 105
>sp|Q0BNX6|ORN_FRATO Oligoribonuclease OS=Francisella tularensis subsp. holarctica
(strain OSU18) GN=orn PE=3 SV=1
Length = 178
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 43/60 (71%)
Query: 32 GLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
+Y +EVL NMNEWC++ H +GLT RV+ S +S E A++++ +F+ K+V +++P+ G
Sbjct: 46 AIYQPDEVLANMNEWCIKTHTETGLTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCG 105
>sp|A1AVF0|ORN_RUTMC Oligoribonuclease OS=Ruthia magnifica subsp. Calyptogena magnifica
GN=orn PE=3 SV=1
Length = 180
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 19 VKAYLQTQGTCKCGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFV 78
V+ ++ QG ++ N+E+L NM++W EHH +SGL RVR SS+S ++A+ + +F+
Sbjct: 34 VQLHIIAQGPSLV-IHQNDEILSNMDQWNTEHHTSSGLLRRVRESSLSCKQAEAQTLEFL 92
Query: 79 AKYVKPKTAPMVG 91
KYV +PM G
Sbjct: 93 KKYVHTGASPMCG 105
>sp|A0Q414|ORN_FRATN Oligoribonuclease OS=Francisella tularensis subsp. novicida (strain
U112) GN=orn PE=3 SV=1
Length = 178
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 44/60 (73%)
Query: 32 GLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
++ ++E+L +MNEWC++ H +GLT RV+ S +S E A++++ +F+ K+V +++P+ G
Sbjct: 46 AIHQSDEILNSMNEWCIKVHCETGLTQRVKDSKISTEAAEQQILEFIRKFVPYQSSPLCG 105
>sp|Q47VZ4|ORN_COLP3 Oligoribonuclease OS=Colwellia psychrerythraea (strain 34H / ATCC
BAA-681) GN=orn PE=3 SV=1
Length = 181
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 34/55 (61%)
Query: 37 EEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
++VL NMN WC+EHH SGLT R R S VS+ A K FV ++V +PM G
Sbjct: 52 DDVLDNMNPWCIEHHGKSGLTQRCRDSEVSLAHATKESLAFVQEWVPQGKSPMCG 106
>sp|Q39IC7|ORN_BURS3 Oligoribonuclease OS=Burkholderia sp. (strain 383) GN=orn PE=3 SV=1
Length = 206
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 32 GLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
++ ++E L M++W H SGL DRVRAS+V+ EA ++L F+A+YV P +PM G
Sbjct: 59 AIHQSDETLAKMDDWNKSTHGRSGLIDRVRASTVTEAEAAEQLQAFLAQYVSPGKSPMCG 118
>sp|A1U4D2|ORN_MARAV Oligoribonuclease OS=Marinobacter aquaeolei (strain ATCC 700491 /
DSM 11845 / VT8) GN=orn PE=3 SV=1
Length = 180
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 41/61 (67%)
Query: 31 CGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMV 90
++ + +L+ M+EWC H ASGLT RV+ S++S EA+++ +F+ K+++P +P+
Sbjct: 45 IAIHQPDSLLEQMDEWCTRTHGASGLTQRVKESTISEAEAEQQTLEFLGKHLEPGQSPLC 104
Query: 91 G 91
G
Sbjct: 105 G 105
>sp|Q07XW1|ORN_SHEFN Oligoribonuclease OS=Shewanella frigidimarina (strain NCIMB 400)
GN=orn PE=3 SV=1
Length = 181
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 32 GLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
+Y +EVL M++W +HH SGL DRVRAS S ++A + F+A+YV +PM G
Sbjct: 47 AIYQTDEVLAGMDDWNQKHHGESGLVDRVRASKCSEQDAIAQTIDFLAQYVPKGASPMCG 106
>sp|A1WTK7|ORN_HALHL Oligoribonuclease OS=Halorhodospira halophila (strain DSM 244 /
SL1) GN=orn PE=3 SV=1
Length = 183
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 32 GLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
++ + +L +M+EW H SGLT+RVRAS+V+ EA+ ++ F+ +YV +T+PM G
Sbjct: 47 AIHQDRSLLDSMDEWNTRQHGRSGLTERVRASTVTEAEAEAQVLAFLKQYVPARTSPMCG 106
>sp|Q9VCI0|ORN_DROME Probable oligoribonuclease OS=Drosophila melanogaster GN=CG10214
PE=1 SV=1
Length = 211
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 23 LQTQGTCKCGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYV 82
++++G C + + +EV +MNEWC++HH SGL DR ++S V++EEA + ++ K +
Sbjct: 69 VKSEGPC-FAINHPQEVYDSMNEWCMKHHYNSGLIDRCKSSDVNLEEASNLVLSYLEKNI 127
Query: 83 KPKTAPMVG 91
+ P+ G
Sbjct: 128 PKRACPLGG 136
>sp|A1K5N0|ORN_AZOSB Oligoribonuclease OS=Azoarcus sp. (strain BH72) GN=orn PE=3 SV=1
Length = 182
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 31 CGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMV 90
++ E VL M++W H SGL DRVRAS+VS EA+ R+ F+ ++V +T+PM
Sbjct: 46 IAVHQPESVLDAMDDWNKNTHGKSGLIDRVRASTVSEAEAEARMLAFLQEWVPARTSPMC 105
Query: 91 G 91
G
Sbjct: 106 G 106
>sp|P54964|ORN_YEAST Oligoribonuclease, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=REX2 PE=1 SV=1
Length = 269
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 33 LYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPK 85
++Y EV+ MNEWC+EHH SGLT +V AS ++ + + L +++ +Y+ K
Sbjct: 102 IHYGPEVMNKMNEWCIEHHGNSGLTAKVLASEKTLAQVEDELLEYIQRYIPDK 154
>sp|Q15Q55|ORN_PSEA6 Oligoribonuclease OS=Pseudoalteromonas atlantica (strain T6c / ATCC
BAA-1087) GN=orn PE=3 SV=1
Length = 181
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 31 CGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMV 90
++ +++VL NMN+WC++ H SGLT+R R S+V + A +F+ KYV +P+
Sbjct: 46 LAIHQSDDVLNNMNQWCIDTHGKSGLTERSRKSTVDEQTAVAETIRFLEKYVPKGASPLC 105
Query: 91 G 91
G
Sbjct: 106 G 106
>sp|A6VD64|ORN_PSEA7 Oligoribonuclease OS=Pseudomonas aeruginosa (strain PA7) GN=orn
PE=3 SV=1
Length = 180
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 31 CGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMV 90
++ EEVL M+EW H SGLT RVR S+VS+ EA+ + F+ ++V +++P+
Sbjct: 45 IAIHQPEEVLAGMDEWNTRQHGQSGLTQRVRESTVSMAEAEAQTLAFLEQWVPKRSSPIC 104
Query: 91 G 91
G
Sbjct: 105 G 105
>sp|Q9D8S4|ORN_MOUSE Oligoribonuclease, mitochondrial OS=Mus musculus GN=Rexo2 PE=1 SV=2
Length = 237
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 37 EEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG-EYHT 95
+E+L +M++WC EHH SGLT V+ S+V++++A+ FV + P P+ G H
Sbjct: 87 DELLDSMSDWCKEHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHA 146
Query: 96 SKELL 100
K+ L
Sbjct: 147 DKKFL 151
>sp|Q5U1X1|ORN_RAT Oligoribonuclease, mitochondrial OS=Rattus norvegicus GN=Rexo2 PE=2
SV=1
Length = 237
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 37 EEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG-EYHT 95
+E+L +M++WC EHH SGLT V+ S+V++++A+ FV + P P+ G H
Sbjct: 87 DELLDSMSDWCKEHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHA 146
Query: 96 SKELL 100
K+ L
Sbjct: 147 DKKFL 151
>sp|P57665|ORN_PSEAE Oligoribonuclease OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=orn PE=3 SV=1
Length = 180
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 31 CGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMV 90
++ EE+L M+EW H SGLT RVR S+VS+ EA+ + F+ ++V +++P+
Sbjct: 45 IAIHQPEEILAGMDEWNTRQHGQSGLTQRVRESTVSMAEAEAQTLAFLEQWVPKRSSPIC 104
Query: 91 G 91
G
Sbjct: 105 G 105
>sp|Q02F67|ORN_PSEAB Oligoribonuclease OS=Pseudomonas aeruginosa (strain UCBPP-PA14)
GN=orn PE=3 SV=1
Length = 180
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 31 CGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMV 90
++ EE+L M+EW H SGLT RVR S+VS+ EA+ + F+ ++V +++P+
Sbjct: 45 IAIHQPEEILAGMDEWNTRQHGQSGLTQRVRESTVSMAEAEAQTLAFLEQWVPKRSSPIC 104
Query: 91 G 91
G
Sbjct: 105 G 105
>sp|Q9Y3B8|ORN_HUMAN Oligoribonuclease, mitochondrial OS=Homo sapiens GN=REXO2 PE=1 SV=3
Length = 237
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 37 EEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG-EYHT 95
+E+L +M++WC EHH SGLT V+ S++++++A+ FV + P P+ G H
Sbjct: 87 DELLDSMSDWCKEHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHE 146
Query: 96 SKELL 100
K+ L
Sbjct: 147 DKKFL 151
>sp|Q13VF8|ORN_BURXL Oligoribonuclease OS=Burkholderia xenovorans (strain LB400) GN=orn
PE=3 SV=1
Length = 207
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 32 GLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
++ ++E L M++W H SGL DRV+AS+VS +A +++ F++ YV P +PM G
Sbjct: 59 AIHQSDETLAGMDQWNQNTHGRSGLIDRVKASTVSEADATEQIRDFLSVYVPPGKSPMCG 118
>sp|O94626|ORN_SCHPO Probable oligoribonuclease OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rex2 PE=3 SV=2
Length = 252
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 37/56 (66%)
Query: 36 NEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
+E+ L MN+WC+E H SGLT+R R S++++++ + +L ++ KY+ K ++
Sbjct: 123 DEKQLSEMNDWCIEQHGKSGLTERCRQSNLTVKDVENQLLAYIKKYIPKKREALIA 178
>sp|A2VE52|ORN_BOVIN Oligoribonuclease, mitochondrial OS=Bos taurus GN=REXO2 PE=2 SV=1
Length = 237
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 37 EEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG-EYHT 95
+E+L +M++WC EHH SGLT V+ S++++++A+ FV + P P+ G H
Sbjct: 87 DELLDSMSDWCKEHHGKSGLTKAVKESTMTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHA 146
Query: 96 SKELL 100
K+ L
Sbjct: 147 DKKFL 151
>sp|Q4ZYY8|ORN_PSEU2 Oligoribonuclease OS=Pseudomonas syringae pv. syringae (strain
B728a) GN=orn PE=3 SV=1
Length = 178
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%)
Query: 31 CGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMV 90
++ ++E L M+EW H SGLT RVR S+VS+ EA+ + +F+ +V +++P+
Sbjct: 45 IAVHQSDETLAKMDEWNTRQHGGSGLTQRVRESTVSMAEAEAQTLEFIKLWVPERSSPIC 104
Query: 91 G 91
G
Sbjct: 105 G 105
>sp|Q88DC5|ORN_PSEPK Oligoribonuclease OS=Pseudomonas putida (strain KT2440) GN=orn PE=3
SV=1
Length = 180
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 31 CGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMV 90
+++++EVL M+EW H ASGLT RVR S VS+ EA+ + F+ ++V +P+
Sbjct: 45 IAIHHSDEVLARMDEWNTRTHGASGLTQRVRESKVSMAEAEAQTIAFLEQWVPKGKSPIC 104
Query: 91 G 91
G
Sbjct: 105 G 105
>sp|A5W9T8|ORN_PSEP1 Oligoribonuclease OS=Pseudomonas putida (strain F1 / ATCC 700007)
GN=orn PE=3 SV=1
Length = 180
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 31 CGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMV 90
+++++EVL M+EW H ASGLT RVR S VS+ EA+ + F+ ++V +P+
Sbjct: 45 IAIHHSDEVLARMDEWNTRTHGASGLTQRVRESKVSMAEAEAQTIAFLEQWVPKGKSPIC 104
Query: 91 G 91
G
Sbjct: 105 G 105
>sp|Q8EJ78|ORN_SHEON Oligoribonuclease OS=Shewanella oneidensis (strain MR-1) GN=orn
PE=3 SV=1
Length = 181
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 31 CGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMV 90
++ ++EVL M++W +HH SGL +RVRAS V+ EA + F+A+YV +PM
Sbjct: 46 IAIHQSDEVLAAMDDWNQKHHGESGLIERVRASQVNEAEAVAQTIAFLAQYVPKGVSPMC 105
Query: 91 G 91
G
Sbjct: 106 G 106
>sp|Q48P10|ORN_PSE14 Oligoribonuclease OS=Pseudomonas syringae pv. phaseolicola (strain
1448A / Race 6) GN=orn PE=3 SV=1
Length = 178
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 38/61 (62%)
Query: 31 CGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMV 90
++ ++E L M+EW H SGLT RVR S++S+ EA+ + +F+ +V +++P+
Sbjct: 45 IAVHQSDETLAKMDEWNTRQHGGSGLTQRVRESTISMAEAEAQTLEFIKLWVPERSSPIC 104
Query: 91 G 91
G
Sbjct: 105 G 105
>sp|Q6F805|ORN_ACIAD Oligoribonuclease OS=Acinetobacter sp. (strain ADP1) GN=orn PE=3
SV=1
Length = 183
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 37 EEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
+ +L M+EW H SGL +RVR S ++ + + + +F+ K+V PKT+PM G
Sbjct: 53 DRILNAMDEWNTRQHGQSGLIERVRRSKLTARDVELQTLEFLKKWVNPKTSPMCG 107
>sp|Q0HR35|ORN_SHESR Oligoribonuclease OS=Shewanella sp. (strain MR-7) GN=orn PE=3 SV=1
Length = 181
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 31 CGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMV 90
++ ++EVL M++W +HH SGL DRVRAS V+ +A + F+ +YV +PM
Sbjct: 46 IAIHQSDEVLAAMDDWNQKHHGESGLIDRVRASQVNEAQAVAQTIAFLEQYVPKGASPMC 105
Query: 91 G 91
G
Sbjct: 106 G 106
>sp|Q0HMP6|ORN_SHESM Oligoribonuclease OS=Shewanella sp. (strain MR-4) GN=orn PE=3 SV=1
Length = 181
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 31 CGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMV 90
++ ++EVL M++W +HH SGL DRVRAS V+ +A + F+ +YV +PM
Sbjct: 46 IAIHQSDEVLAAMDDWNQKHHGESGLIDRVRASQVNEAQAVAQTIAFLEQYVPKGASPMC 105
Query: 91 G 91
G
Sbjct: 106 G 106
>sp|Q7MGZ7|ORN_VIBVY Oligoribonuclease OS=Vibrio vulnificus (strain YJ016) GN=orn PE=3
SV=2
Length = 181
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 31 CGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMV 90
++ +EE L M+EWC H SGL +RVR S ++ +EA ++ F+ K+V +P+
Sbjct: 46 LAIHQSEEELAKMDEWCTNTHTGSGLVERVRGSQITEQEAVEQTIAFLEKWVPKGVSPIC 105
Query: 91 G 91
G
Sbjct: 106 G 106
>sp|Q8DCV6|ORN_VIBVU Oligoribonuclease OS=Vibrio vulnificus (strain CMCP6) GN=orn PE=3
SV=2
Length = 181
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 31 CGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMV 90
++ +EE L M+EWC H SGL +RVR S ++ +EA ++ F+ K+V +P+
Sbjct: 46 LAIHQSEEELAKMDEWCTNTHTGSGLVERVRGSQITEQEAVEQTIAFLEKWVPKGVSPIC 105
Query: 91 G 91
G
Sbjct: 106 G 106
>sp|A3QAD3|ORN_SHELP Oligoribonuclease OS=Shewanella loihica (strain ATCC BAA-1088 /
PV-4) GN=orn PE=3 SV=1
Length = 181
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%)
Query: 31 CGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMV 90
++ +E+VL M++W +HH SGL DRVRAS S ++A ++ F++++V +PM
Sbjct: 46 IAIHQSEDVLAAMDDWNQKHHGESGLIDRVRASDFSEQDAIEQTIAFLSEHVPAGVSPMC 105
Query: 91 G 91
G
Sbjct: 106 G 106
>sp|Q12J88|ORN_SHEDO Oligoribonuclease OS=Shewanella denitrificans (strain OS217 / ATCC
BAA-1090 / DSM 15013) GN=orn PE=3 SV=1
Length = 181
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%)
Query: 31 CGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMV 90
++ ++E L M++W +HH SGL DRV+AS + +A ++ +F+A+YV +PM
Sbjct: 46 IAIHQSDETLAKMDDWNQKHHGQSGLIDRVKASQFTEADAIEQTIKFLAQYVPKGASPMC 105
Query: 91 G 91
G
Sbjct: 106 G 106
>sp|A4VR15|ORN_PSEU5 Oligoribonuclease OS=Pseudomonas stutzeri (strain A1501) GN=orn
PE=3 SV=1
Length = 180
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 31 CGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMV 90
++ ++EVL M+EW H SGLT RVR S +S EA++ +F+ ++V +P+
Sbjct: 45 IAVHQSDEVLARMDEWNTRQHGGSGLTQRVRESRISTAEAERLTLEFLEQWVPKGKSPIC 104
Query: 91 G 91
G
Sbjct: 105 G 105
>sp|Q4KJ81|ORN_PSEF5 Oligoribonuclease OS=Pseudomonas fluorescens (strain Pf-5 / ATCC
BAA-477) GN=orn PE=3 SV=1
Length = 180
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 31 CGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMV 90
++ ++E+L M+EW H SGLT RVR S +S+ EA+ + F+ ++V +P+
Sbjct: 45 IAIHQSDEILAGMDEWNTRQHGGSGLTQRVRESRISMAEAEAQTIAFLEQWVPKGKSPIC 104
Query: 91 G 91
G
Sbjct: 105 G 105
>sp|Q3SHU1|ORN_THIDA Oligoribonuclease OS=Thiobacillus denitrificans (strain ATCC 25259)
GN=orn PE=3 SV=1
Length = 182
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 37 EEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
+ V+ M+ W H SGL DRV+AS +S +A+ ++ +FV ++V P+T+PM G
Sbjct: 52 DAVMDAMDSWNRGTHGKSGLIDRVKASQLSESDAEAQMLEFVKQHVSPRTSPMCG 106
>sp|Q0ADS5|ORN_NITEC Oligoribonuclease OS=Nitrosomonas eutropha (strain C91) GN=orn PE=3
SV=1
Length = 181
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 37 EEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
+ VL M++W H SGL D+V+AS++S EA+ R+ F+A YV +PM G
Sbjct: 52 DSVLNGMDKWNQSTHGKSGLIDKVKASTLSEAEAEARMLAFLAPYVPADISPMCG 106
>sp|Q65SE1|ORN_MANSM Oligoribonuclease OS=Mannheimia succiniciproducens (strain MBEL55E)
GN=orn PE=3 SV=1
Length = 186
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 40/61 (65%)
Query: 31 CGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMV 90
++ ++E+L M++WC++ H+A+GL DRV+AS ++ A+ + F+ K+V +P+
Sbjct: 46 LAVHQSDELLAKMSDWCIKTHSANGLVDRVKASKLTERAAELQTIDFLKKWVPKGASPIC 105
Query: 91 G 91
G
Sbjct: 106 G 106
>sp|Q1I440|ORN_PSEE4 Oligoribonuclease OS=Pseudomonas entomophila (strain L48) GN=orn
PE=3 SV=1
Length = 180
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 31 CGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMV 90
+++++EVL M+EW H SGLT RVR S VS+ EA+ + F+ ++V +P+
Sbjct: 45 IAIHHSDEVLARMDEWNTRTHGNSGLTQRVRESKVSMAEAEAQTIAFLEQWVPKGKSPIC 104
Query: 91 G 91
G
Sbjct: 105 G 105
>sp|Q9JW09|ORN_NEIMA Oligoribonuclease OS=Neisseria meningitidis serogroup A / serotype
4A (strain Z2491) GN=orn PE=3 SV=1
Length = 187
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%)
Query: 32 GLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
++ ++E+L NM+EW H +GLT RVR SS + E +++L F++++V + PM G
Sbjct: 46 AIHQSDELLDNMDEWNTATHGRTGLTQRVRESSHTEAEVEQKLLDFMSEWVPRRATPMCG 105
>sp|A1TND9|ORN_ACIAC Oligoribonuclease OS=Acidovorax citrulli (strain AAC00-1) GN=orn
PE=3 SV=1
Length = 193
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 39/60 (65%)
Query: 32 GLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
++ ++ +L M+ W H SGL ++VRAS+V+ EA++ + +F+A+YV+ APM G
Sbjct: 59 AIHQSDALLDGMDAWNKGTHGRSGLIEKVRASTVTEAEAEQAILEFLARYVRKGVAPMCG 118
>sp|Q31HZ4|ORN_THICR Oligoribonuclease OS=Thiomicrospira crunogena (strain XCL-2) GN=orn
PE=3 SV=1
Length = 184
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 40 LQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
L M+ WC HH SGLT RV+ S++++ +A++ +F+ YV +PM G
Sbjct: 54 LDGMDAWCTTHHGNSGLTKRVQESTITMAQAEQETIKFLKPYVPKGKSPMCG 105
>sp|Q87VI6|ORN_PSESM Oligoribonuclease OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=orn PE=3 SV=1
Length = 178
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 31 CGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMV 90
++ ++E L M+EW H SGLT RVR S++S+ +A+ + F+ +V +++P+
Sbjct: 45 IAVHQSDETLAKMDEWNTRQHGGSGLTQRVRESTISMADAEAQTLAFIKLWVPERSSPIC 104
Query: 91 G 91
G
Sbjct: 105 G 105
>sp|Q3KIZ7|ORN_PSEPF Oligoribonuclease OS=Pseudomonas fluorescens (strain Pf0-1) GN=orn
PE=3 SV=1
Length = 180
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 31 CGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMV 90
+++++EVL M+EW H SGLT RVR S VS+ EA+ F+ ++V +P+
Sbjct: 45 IAIHHSDEVLARMDEWNTRTHGNSGLTQRVRESRVSMAEAEAETIAFLEQWVPKGKSPIC 104
Query: 91 G 91
G
Sbjct: 105 G 105
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,354,192
Number of Sequences: 539616
Number of extensions: 1368173
Number of successful extensions: 3948
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 3778
Number of HSP's gapped (non-prelim): 191
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)