Query psy13232
Match_columns 111
No_of_seqs 130 out of 663
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 23:30:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13232.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13232hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tr8_A Oligoribonuclease; tran 99.9 3.8E-23 1.3E-27 155.0 6.7 101 3-107 18-126 (186)
2 2gbz_A Oligoribonuclease; ORN, 99.7 6.3E-17 2.1E-21 119.3 6.0 101 3-107 18-126 (194)
3 2igi_A Oligoribonuclease; RNAs 99.6 2.1E-15 7.2E-20 108.6 6.8 101 3-107 14-122 (180)
4 2f96_A Ribonuclease T; RNAse, 98.3 1.2E-07 4.1E-12 70.5 1.5 95 3-106 38-147 (224)
5 3u3y_B Three prime repair exon 98.3 5.8E-08 2E-12 78.2 -1.3 99 3-107 21-141 (314)
6 1w0h_A 3'-5' exonuclease ERI1; 98.2 7.3E-07 2.5E-11 64.6 3.4 95 3-106 19-127 (204)
7 3v9w_A Ribonuclease T; DEDD nu 98.2 9.3E-07 3.2E-11 65.9 3.6 95 3-106 46-155 (235)
8 1y97_A Three prime repair exon 98.1 7.1E-07 2.4E-11 66.4 1.8 97 3-107 19-136 (238)
9 2p1j_A POLIII, DNA polymerase 98.1 2.1E-06 7.2E-11 62.2 4.0 87 3-106 21-113 (186)
10 3mxm_B Three prime repair exon 98.1 1.9E-07 6.5E-12 71.2 -1.8 99 3-107 21-141 (242)
11 2xri_A ERI1 exoribonuclease 3; 98.0 3.6E-06 1.2E-10 62.8 4.1 92 3-103 40-144 (224)
12 2gui_A DNA polymerase III epsi 98.0 8.6E-06 3E-10 58.7 5.1 87 3-106 18-116 (194)
13 1wlj_A Interferon stimulated g 97.8 8.3E-06 2.8E-10 59.3 2.4 87 3-106 14-104 (189)
14 1zbh_A 3'-5' exonuclease ERI1; 97.6 3.8E-05 1.3E-09 59.9 3.9 93 3-104 87-193 (299)
15 2qxf_A Exodeoxyribonuclease I; 97.3 5E-05 1.7E-09 64.0 1.2 93 3-107 18-119 (482)
16 1zbu_A ERI-1 homolog, 3'-5' ex 97.2 0.00018 6.2E-09 58.0 3.1 93 3-104 137-243 (349)
17 3cg7_A CRN-4, cell death-relat 96.9 0.0006 2.1E-08 53.7 3.6 93 3-104 28-134 (308)
18 2d74_B Translation initiation 73.7 2.6 8.8E-05 30.6 3.1 54 37-93 43-113 (148)
19 1fex_A TRF2-interacting telome 69.8 4.8 0.00016 24.6 3.3 31 64-96 4-35 (59)
20 2e9h_A EIF-5, eukaryotic trans 69.0 3 0.0001 30.6 2.6 30 61-93 83-112 (157)
21 2g2k_A EIF-5, eukaryotic trans 63.2 3.9 0.00013 30.4 2.2 31 52-82 62-97 (170)
22 1l8d_A DNA double-strand break 52.8 4.8 0.00016 26.5 1.1 12 84-95 47-59 (112)
23 1nee_A EIF-2-beta, probable tr 47.0 2.8 9.7E-05 30.0 -0.8 54 37-93 41-111 (138)
24 1zoi_A Esterase; alpha/beta hy 34.4 64 0.0022 22.2 4.7 53 51-108 60-115 (276)
25 3fsg_A Alpha/beta superfamily 31.9 20 0.00069 23.9 1.6 29 65-93 69-97 (272)
26 2wfl_A Polyneuridine-aldehyde 29.4 25 0.00085 24.6 1.8 53 51-107 48-103 (264)
27 1zun_A Sulfate adenylyltransfe 28.8 22 0.00075 27.8 1.5 55 48-102 6-64 (325)
28 1s3a_A NADH-ubiquinone oxidore 28.3 21 0.00072 23.5 1.2 23 84-107 24-47 (102)
29 3oy2_A Glycosyltransferase B73 27.7 51 0.0017 24.5 3.4 57 36-93 343-402 (413)
30 2k4z_A DSRR; ISCA/SUFA/HESB li 27.5 14 0.00048 25.3 0.2 34 48-81 6-40 (125)
31 3hx3_A Retinaldehyde-binding p 27.2 49 0.0017 25.3 3.3 43 37-79 59-118 (316)
32 4e2i_2 DNA polymerase alpha su 27.0 63 0.0022 21.1 3.3 58 31-103 15-73 (78)
33 2dk8_A DNA-directed RNA polyme 26.5 55 0.0019 21.3 3.0 21 65-86 10-30 (81)
34 1xkl_A SABP2, salicylic acid-b 25.0 29 0.00098 24.6 1.5 53 51-107 42-97 (273)
35 2ikf_A RNA uridylyl transferas 24.8 31 0.001 27.0 1.7 36 48-83 6-41 (353)
36 3sty_A Methylketone synthase 1 24.0 53 0.0018 21.9 2.6 53 51-107 50-105 (267)
37 3afi_E Haloalkane dehalogenase 23.4 51 0.0018 23.8 2.6 52 51-108 66-120 (316)
38 1v9v_A KIAA0561 protein; helix 23.3 58 0.002 22.8 2.7 24 67-90 11-34 (114)
39 4b2v_A S64; toxin, ICK; NMR {S 22.8 19 0.00066 19.8 0.1 8 41-48 14-21 (32)
40 3g15_A CK, chetk-alpha, cholin 22.7 47 0.0016 25.8 2.4 35 49-83 6-44 (401)
41 2wj6_A 1H-3-hydroxy-4-oxoquina 22.5 65 0.0022 22.8 3.0 38 51-93 64-101 (276)
42 3p52_A NH(3)-dependent NAD(+) 22.4 42 0.0014 25.1 2.0 40 63-102 2-44 (249)
43 3fob_A Bromoperoxidase; struct 22.3 91 0.0031 21.6 3.7 53 51-108 65-120 (281)
44 3c6x_A Hydroxynitrilase; atomi 22.3 43 0.0015 23.3 1.9 50 51-103 41-93 (257)
45 3fau_A NEDD4-binding protein 2 22.2 73 0.0025 19.6 2.8 19 64-82 7-25 (82)
46 3or1_C Sulfite reductase GAMA; 22.1 35 0.0012 23.2 1.4 44 39-88 18-64 (105)
47 1y66_A Engrailed homeodomain; 22.1 61 0.0021 19.4 2.3 15 67-81 5-19 (52)
48 1a8s_A Chloroperoxidase F; hal 21.5 1.1E+02 0.0038 20.7 4.0 53 51-108 57-112 (273)
49 2g3v_A CAG pathogenicity islan 21.4 21 0.00072 26.6 0.1 24 39-62 44-67 (208)
50 2ebf_X Dermonecrotic toxin; pa 21.1 24 0.00083 31.5 0.5 33 75-107 360-392 (746)
51 2p57_A GTPase-activating prote 20.8 61 0.0021 23.2 2.5 42 49-92 4-45 (144)
52 3c5v_A PME-1, protein phosphat 20.7 78 0.0027 22.6 3.1 49 51-102 77-130 (316)
53 2e1c_A Putative HTH-type trans 20.6 32 0.0011 24.1 1.0 35 48-82 6-40 (171)
54 1ji8_A Dissimilatory siroheme- 20.1 46 0.0016 23.0 1.7 45 38-88 22-70 (111)
No 1
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.88 E-value=3.8e-23 Score=155.05 Aligned_cols=101 Identities=28% Similarity=0.413 Sum_probs=95.2
Q ss_pred CCCCCCCccccccHhhhhhheeeCCc-------eeeeeecCHHHHhhccchhhhccccccchHHHHhCCCCHHHHHHHHH
Q psy13232 3 NIGNRPSNTALSSMEQVKAYLQTQGT-------CKCGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLH 75 (111)
Q Consensus 3 ~~~~~p~~~~l~s~~q~~~~lvTd~G-------~~~vIhqp~~vL~~MdeWc~~~H~~SGL~~~vr~S~~s~~~AE~~ll 75 (111)
.||++|.+++.-| .++|++|++ +.++|++|++.|+.|++||.++|+-+||+++++++..+.++|..+++
T Consensus 18 TTGL~p~~d~IiE----IgaV~~d~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p~~~ev~~~~l 93 (186)
T 3tr8_A 18 MTGLDPERDRIIE----IATIVTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSVDEVEAETLTL 93 (186)
T ss_dssp ESSSCTTTCCEEE----EEEEEECTTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCCCHHHHHHHHH
T ss_pred CCCCCCCCCceEE----EEEEEEcCCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcCCCHHHHHHHHH
Confidence 5899999999999 889998863 45679999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCcccCCc-HHhHHHHhhccccc
Q psy13232 76 QFVAKYVKPKTAPMVGEY-HTSKELLKDSDHFL 107 (111)
Q Consensus 76 ~fikk~vp~~~~pLaGNS-~~DR~FL~kymP~l 107 (111)
+|+++|++++.+||+||+ ++|+.||.++||++
T Consensus 94 ~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~ 126 (186)
T 3tr8_A 94 AFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRL 126 (186)
T ss_dssp HHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHH
T ss_pred HHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHc
Confidence 999999999999999999 99999999999986
No 2
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.67 E-value=6.3e-17 Score=119.33 Aligned_cols=101 Identities=23% Similarity=0.360 Sum_probs=92.1
Q ss_pred CCCCCCCccccccHhhhhhheeeCCc-------eeeeeecCHHHHhhccchhhhccccccchHHHHhCCCCHHHHHHHHH
Q psy13232 3 NIGNRPSNTALSSMEQVKAYLQTQGT-------CKCGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLH 75 (111)
Q Consensus 3 ~~~~~p~~~~l~s~~q~~~~lvTd~G-------~~~vIhqp~~vL~~MdeWc~~~H~~SGL~~~vr~S~~s~~~AE~~ll 75 (111)
.||++|..+..-+ .+++.+|+. +...|+++.++++.|++||.+.|.-+|++++..++..+.++|..+++
T Consensus 18 TTGl~p~~d~Iie----Igav~~~~~~~~~~~~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~~~p~~~ev~~~~~ 93 (194)
T 2gbz_A 18 MTGLDTDRDSIIE----IATIVTDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQVTHAQAEAQTV 93 (194)
T ss_dssp ESCSCTTTCCEEE----EEEEEEETTCCEEEECCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHCCCCHHHHHHHHH
T ss_pred CCCCCCCCCccEE----EEEEEEcCCcceeccCceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHhcCCCHHHHHHHHH
Confidence 5899999999888 777766654 45678999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCcccCCc-HHhHHHHhhccccc
Q psy13232 76 QFVAKYVKPKTAPMVGEY-HTSKELLKDSDHFL 107 (111)
Q Consensus 76 ~fikk~vp~~~~pLaGNS-~~DR~FL~kymP~l 107 (111)
+|++.++++++++|+|++ .+|+.||.+++|++
T Consensus 94 ~~l~~~~~~~~~~lvghn~~FD~~fL~~~~~~~ 126 (194)
T 2gbz_A 94 AFLGEWIRAGASPMCGNSICQDRRFLHRQMSRL 126 (194)
T ss_dssp HHHTTTCCTTSSCEEESSHHHHHHHHHHHCHHH
T ss_pred HHHHHhCCCCCceEEecCHHHhHHHHHHHHHHh
Confidence 999999999999999999 99999999999874
No 3
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.59 E-value=2.1e-15 Score=108.63 Aligned_cols=101 Identities=27% Similarity=0.388 Sum_probs=91.2
Q ss_pred CCCCCCCccccccHhhhhhheeeCCc-------eeeeeecCHHHHhhccchhhhccccccchHHHHhCCCCHHHHHHHHH
Q psy13232 3 NIGNRPSNTALSSMEQVKAYLQTQGT-------CKCGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLH 75 (111)
Q Consensus 3 ~~~~~p~~~~l~s~~q~~~~lvTd~G-------~~~vIhqp~~vL~~MdeWc~~~H~~SGL~~~vr~S~~s~~~AE~~ll 75 (111)
.||++|.++..-+ .+++++|++ ++..|+++..+.+.|++||++.|.-+|++++..++..+.++|..+++
T Consensus 14 TTGl~~~~~~Iie----Ig~v~~~~~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~~~~~v~~~~~ 89 (180)
T 2igi_A 14 MTGLDPERDRIIE----IATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATL 89 (180)
T ss_dssp ESSSCTTTCCEEE----EEEEEECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCCHHHHHHHHH
T ss_pred CCCCCCCCCceEE----EEEEEEcCCCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCCCHHHHHHHHH
Confidence 5899999888888 777777743 66788899999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCcccCCc-HHhHHHHhhccccc
Q psy13232 76 QFVAKYVKPKTAPMVGEY-HTSKELLKDSDHFL 107 (111)
Q Consensus 76 ~fikk~vp~~~~pLaGNS-~~DR~FL~kymP~l 107 (111)
+|++++++++.++|+|++ .+|+.||.++++++
T Consensus 90 ~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~ 122 (180)
T 2igi_A 90 EFLKQWVPAGKSPICGNSIGQDRRFLFKYMPEL 122 (180)
T ss_dssp HHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHH
T ss_pred HHHHHhCCCCCceEEecCHHHHHHHHHHHHHHh
Confidence 999999988889999999 99999999988753
No 4
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=98.33 E-value=1.2e-07 Score=70.45 Aligned_cols=95 Identities=19% Similarity=0.065 Sum_probs=72.7
Q ss_pred CCCCCCCccccccHhhhhhheeeC---Cc-------eeeeeecCHHHHhhccchhhhccccccchHH-HHhCCCCHHHHH
Q psy13232 3 NIGNRPSNTALSSMEQVKAYLQTQ---GT-------CKCGLYYNEEVLQNMNEWCVEHHNASGLTDR-VRASSVSIEEAD 71 (111)
Q Consensus 3 ~~~~~p~~~~l~s~~q~~~~lvTd---~G-------~~~vIhqp~~vL~~MdeWc~~~H~~SGL~~~-vr~S~~s~~~AE 71 (111)
.||++|.++..-+ .+++..+ .| +...|+++.. ..+.++|++.| |++++ +.+...+.++|-
T Consensus 38 TTGl~~~~~~Iie----Ig~v~~~~~~~g~i~~~~~f~~lV~P~~~--~~i~~~~~~ih---GIt~e~~v~~~~~~~~v~ 108 (224)
T 2f96_A 38 TGGFNSATDALLE----IAATTVGMDEKGFLFPEHTYFFRIEPFEG--ANIEPAALEFT---GIKLDHPLRMAVQEEAAL 108 (224)
T ss_dssp ESSSCTTTBCEEE----EEEEEEEECTTSCEEEEEEEEEEBCCCTT--CBCCHHHHHHH---TCCTTCTTCCCBCHHHHH
T ss_pred CCCCCCCCCeeEE----EEEEEEEEcCCCcccccceEEEEECCCCC--CCCCHHHHHHh---CCCHHHHHhcCCCHHHHH
Confidence 5899999887777 6666664 33 2344665422 46889999998 88875 566789999999
Q ss_pred HHHHHHHHhhCC---CCCCcccCCc-HHhHHHHhhcccc
Q psy13232 72 KRLHQFVAKYVK---PKTAPMVGEY-HTSKELLKDSDHF 106 (111)
Q Consensus 72 ~~ll~fikk~vp---~~~~pLaGNS-~~DR~FL~kymP~ 106 (111)
.++++||+++++ .+.++|+|.. .+|+.||.+++.+
T Consensus 109 ~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~~fL~~~~~~ 147 (224)
T 2f96_A 109 TEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVAR 147 (224)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccCCCEEEEeChhhhHHHHHHHHHH
Confidence 999999998874 2456899998 9999999987654
No 5
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=98.28 E-value=5.8e-08 Score=78.22 Aligned_cols=99 Identities=12% Similarity=0.119 Sum_probs=79.6
Q ss_pred CCCCCCCccccccHhhhhhheeeCC----------ceeeeeecCHHHHhhccchhhhcc--------ccccchHHHHhCC
Q psy13232 3 NIGNRPSNTALSSMEQVKAYLQTQG----------TCKCGLYYNEEVLQNMNEWCVEHH--------NASGLTDRVRASS 64 (111)
Q Consensus 3 ~~~~~p~~~~l~s~~q~~~~lvTd~----------G~~~vIhqp~~vL~~MdeWc~~~H--------~~SGL~~~vr~S~ 64 (111)
.||++|.++..-+ .+++..++ |++.+|+++.++++.+ +||.+-+ .-+|++++..+..
T Consensus 21 TTGL~~~~d~IIE----IgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~-~~lI~P~~~I~~~a~~IhGIT~e~l~~a 95 (314)
T 3u3y_B 21 ATGLPSSRPEVTE----LCLLAVHRRALENTSISQGHPPPVPRPPRVVDKL-SLCIAPGKACSPGASEITGLSKAELEVQ 95 (314)
T ss_dssp ESSCGGGCCCEEE----EEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEE-EEECBCSSCCCHHHHHHHSCCHHHHHHT
T ss_pred CCCCCCCCCeEEE----EEEEEEECCccccccccccccccccccceeeeeE-EEEECCCCCCCHHHHHhcCCCHHHHHhC
Confidence 5899999999999 77777753 4678899999899888 5776664 3579998777665
Q ss_pred --CCH-HHHHHHHHHHHHhhCCCCCCcccCCc-HHhHHHHhhccccc
Q psy13232 65 --VSI-EEADKRLHQFVAKYVKPKTAPMVGEY-HTSKELLKDSDHFL 107 (111)
Q Consensus 65 --~s~-~~AE~~ll~fikk~vp~~~~pLaGNS-~~DR~FL~kymP~l 107 (111)
.+. +++-.++++|++.+ +++.+.+|-|+ .+|+.||.+.+.++
T Consensus 96 G~P~f~~ev~~~l~~fL~~~-~~~~vLVAHNga~FD~~FL~~el~r~ 141 (314)
T 3u3y_B 96 GRQRFDDNLAILLRAFLQRQ-PQPCCLVAHNGDRYDFPLLQTELARL 141 (314)
T ss_dssp TCCBSCHHHHHHHHHHHHTS-CSSEEEEETTTTTTHHHHHHHHHHTS
T ss_pred CCCCcHHHHHHHHHHHHhcC-CCCcEEEEeCcHHHHHHHHHHHHHHc
Confidence 678 79999999999985 34566889998 99999999877654
No 6
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=98.21 E-value=7.3e-07 Score=64.60 Aligned_cols=95 Identities=5% Similarity=0.016 Sum_probs=68.8
Q ss_pred CCCCCC----CccccccHhhhhhheeeC--Cc-----eeeeeecCHHHHhhccchhhhccccccchHHHHhCCCCHHHHH
Q psy13232 3 NIGNRP----SNTALSSMEQVKAYLQTQ--GT-----CKCGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEAD 71 (111)
Q Consensus 3 ~~~~~p----~~~~l~s~~q~~~~lvTd--~G-----~~~vIhqp~~vL~~MdeWc~~~H~~SGL~~~vr~S~~s~~~AE 71 (111)
.||++| ..+..-+ .+++..| .| +...|++.. ...+.++|++.| |++++-.++..+.++|-
T Consensus 19 TTGl~~~~~~~~~~Iie----igav~~~~~~g~i~~~f~~lv~P~~--~~~i~~~~~~i~---GIt~~~l~~~~~~~~v~ 89 (204)
T 1w0h_A 19 ATCEEGNPPEFVHEIIE----FPVVLLNTHTLEIEDTFQQYVRPEI--NTQLSDFCISLT---GITQDQVDRADTFPQVL 89 (204)
T ss_dssp ECCCTTCCTTSCCCEEE----EEEEEEETTTCSEEEEEEEEBCCSS--SCSCCHHHHHHH---CCCHHHHHTSBCHHHHH
T ss_pred cCCcCCCCCCCCCcEEE----EEEEEEECCCCEEeeeeeeEECCCC--CCccCHHHHHHh---CCCHHHHhCCCCHHHHH
Confidence 578887 4455666 5666665 22 334555443 136889999988 89988888899999999
Q ss_pred HHHHHHHHhhC--CCCCCcccCCcHHhHH-HHhhcccc
Q psy13232 72 KRLHQFVAKYV--KPKTAPMVGEYHTSKE-LLKDSDHF 106 (111)
Q Consensus 72 ~~ll~fikk~v--p~~~~pLaGNS~~DR~-FL~kymP~ 106 (111)
.++++|+++.+ +++...+|.|..+|++ ||.+++.+
T Consensus 90 ~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~ 127 (204)
T 1w0h_A 90 KKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQL 127 (204)
T ss_dssp HHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHH
Confidence 99999999986 2444456666699996 99886543
No 7
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.19 E-value=9.3e-07 Score=65.91 Aligned_cols=95 Identities=17% Similarity=0.114 Sum_probs=72.0
Q ss_pred CCCCCCCccccccHhhhhhheeeC---Cc-------eeeeeecCHHHHhhccchhhhccccccchHH-HHhCCCCHHHHH
Q psy13232 3 NIGNRPSNTALSSMEQVKAYLQTQ---GT-------CKCGLYYNEEVLQNMNEWCVEHHNASGLTDR-VRASSVSIEEAD 71 (111)
Q Consensus 3 ~~~~~p~~~~l~s~~q~~~~lvTd---~G-------~~~vIhqp~~vL~~MdeWc~~~H~~SGL~~~-vr~S~~s~~~AE 71 (111)
.||++|..+.+-+ .+++..+ .| +...|.++.. ..+.++|++.| |++++ ..+...+.++|-
T Consensus 46 TTGl~~~~~~Iie----Igav~~~~~~~g~i~~~~~f~~~v~P~~~--~~i~~~~~~i~---GIt~e~~v~~~~~~~~vl 116 (235)
T 3v9w_A 46 TAGFNAKTDALLE----IAAITLKMDEQGWLMPDTTLHFHVEPFVG--ANLQPEALAFN---GIDPNDPDRGAVSGYEAL 116 (235)
T ss_dssp ESSSCTTTBCEEE----EEEEEEEECTTSCEEEEEEEEEEBCCCTT--CBCCHHHHHHH---CCCTTCGGGCCBCHHHHH
T ss_pred CCCCCCCCCeEEE----EEEEEEEEcCCCcccccceEEEEECCCCC--CCCCHHHHHHh---CCCHHHHHhcCCCHHHHH
Confidence 4799998888877 6666554 33 3334555322 35788888876 67776 666789999999
Q ss_pred HHHHHHHHhhCCC---CCCcccCCc-HHhHHHHhhcccc
Q psy13232 72 KRLHQFVAKYVKP---KTAPMVGEY-HTSKELLKDSDHF 106 (111)
Q Consensus 72 ~~ll~fikk~vp~---~~~pLaGNS-~~DR~FL~kymP~ 106 (111)
.++++|+++|++. +..+++|.. .+|+.||.+++++
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~ 155 (235)
T 3v9w_A 117 HEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAER 155 (235)
T ss_dssp HHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHH
Confidence 9999999999875 567899998 9999999987654
No 8
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=98.12 E-value=7.1e-07 Score=66.36 Aligned_cols=97 Identities=13% Similarity=0.108 Sum_probs=66.4
Q ss_pred CCCCCCCccccccHhhhhhheeeCCc-------eeeeeecCHHHHh----------hccchhhhccccccchHHHHh--C
Q psy13232 3 NIGNRPSNTALSSMEQVKAYLQTQGT-------CKCGLYYNEEVLQ----------NMNEWCVEHHNASGLTDRVRA--S 63 (111)
Q Consensus 3 ~~~~~p~~~~l~s~~q~~~~lvTd~G-------~~~vIhqp~~vL~----------~MdeWc~~~H~~SGL~~~vr~--S 63 (111)
.||++|+.+..-+ .+++.++.| ...+||++.++++ .+.++|++.| |++++... .
T Consensus 19 TTGl~~~~~~Iie----Ig~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~~i~~~~~~i~---GIt~~~l~~~~ 91 (238)
T 1y97_A 19 ATGLPSVEPEIAE----LSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPFTAKASEIT---GLSSEGLARCR 91 (238)
T ss_dssp ESSCGGGCCCEEE----EEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSSCCCHHHHHHH---CCCHHHHHHTT
T ss_pred CCCcCCCCCcEEE----EEEEEecccccccccccccccccccccceeeEEEECCCCcCCHHHHHHh---CCCHHHHhhcC
Confidence 5899998888888 777777754 1222333333332 3566777665 88888763 3
Q ss_pred CCCH-HHHHHHHHHHHHhhCCCCCCcccCCc-HHhHHHHhhccccc
Q psy13232 64 SVSI-EEADKRLHQFVAKYVKPKTAPMVGEY-HTSKELLKDSDHFL 107 (111)
Q Consensus 64 ~~s~-~~AE~~ll~fikk~vp~~~~pLaGNS-~~DR~FL~kymP~l 107 (111)
..+. +++..++.+|++. ++.+...+|.|. .+|+.||.++++++
T Consensus 92 ~p~f~~~v~~~l~~fl~~-~~~~~~lVahN~~~FD~~fL~~~~~~~ 136 (238)
T 1y97_A 92 KAGFDGAVVRTLQAFLSR-QAGPICLVAHNGFDYDFPLLCAELRRL 136 (238)
T ss_dssp CCCSCHHHHHHHHHHHTT-SCSSEEEEETTTTTTHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHh-CCCCCEEEecCchhhhHHHHHHHHHHc
Confidence 4555 5899999999986 333355777899 99999999987653
No 9
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=98.11 E-value=2.1e-06 Score=62.15 Aligned_cols=87 Identities=16% Similarity=0.150 Sum_probs=66.7
Q ss_pred CCCCCCCccccccHhhhhhheeeCCc-----eeeeeecCHHHHhhccchhhhccccccchHHHHhCCCCHHHHHHHHHHH
Q psy13232 3 NIGNRPSNTALSSMEQVKAYLQTQGT-----CKCGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQF 77 (111)
Q Consensus 3 ~~~~~p~~~~l~s~~q~~~~lvTd~G-----~~~vIhqp~~vL~~MdeWc~~~H~~SGL~~~vr~S~~s~~~AE~~ll~f 77 (111)
.||++|.++.+-+ .+++..++| +...|++.. .+.++|++.| |++++..++..+.++|-.++++|
T Consensus 21 TTGl~~~~~~Iie----Ig~v~~~~g~i~~~f~~lv~P~~----~i~~~~~~i~---GIt~~~l~~~~~~~~v~~~~~~~ 89 (186)
T 2p1j_A 21 TTGLDPQVDEIIE----IGAVKIQGGQIVDEYHTLIKPSR----EISRKSSEIT---GITQEMLENKRSIEEVLPEFLGF 89 (186)
T ss_dssp ESCSCTTTCCEEE----EEEEEEETTEEEEEEEEECBCSS----CCCHHHHHHH---CCCHHHHTTCCBHHHHHHHHHHH
T ss_pred CCCCCCCCCeEEE----EEEEEEECCEEEEEEEEEECcCC----CCCHHHhhhc---CCCHHHHhcCCCHHHHHHHHHHH
Confidence 5899998877777 666665555 344566433 4778888775 78888888889999999999988
Q ss_pred HHhhCCCCCCcccCCc-HHhHHHHhhcccc
Q psy13232 78 VAKYVKPKTAPMVGEY-HTSKELLKDSDHF 106 (111)
Q Consensus 78 ikk~vp~~~~pLaGNS-~~DR~FL~kymP~ 106 (111)
++. .+|+|.. .+|+.||.+.+++
T Consensus 90 l~~------~~lv~hn~~fD~~~L~~~~~~ 113 (186)
T 2p1j_A 90 LED------SIIVAHNANFDYRFLRLWIKK 113 (186)
T ss_dssp SSS------CEEEETTHHHHHHHHHHHHHH
T ss_pred HCC------CEEEEECcHHHHHHHHHHHHH
Confidence 752 5789988 9999999987654
No 10
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=98.10 E-value=1.9e-07 Score=71.19 Aligned_cols=99 Identities=12% Similarity=0.121 Sum_probs=76.1
Q ss_pred CCCCCCCccccccHhhhhhheeeCC----------ceeeeeecCHHHHhhccchhhhcc--------ccccchHHHHhCC
Q psy13232 3 NIGNRPSNTALSSMEQVKAYLQTQG----------TCKCGLYYNEEVLQNMNEWCVEHH--------NASGLTDRVRASS 64 (111)
Q Consensus 3 ~~~~~p~~~~l~s~~q~~~~lvTd~----------G~~~vIhqp~~vL~~MdeWc~~~H--------~~SGL~~~vr~S~ 64 (111)
.||++|.++..-+ .+++..++ |...+++++.++++.++ |+.+-+ .-+|++++..++.
T Consensus 21 TTGl~~~~d~IiE----Igav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~li~P~~~i~~~~~~i~GIt~~~l~~~ 95 (242)
T 3mxm_B 21 ATGLPSSRPEVTE----LCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLS-LCIAPGKACSPGASEITGLSKAELEVQ 95 (242)
T ss_dssp ESSCGGGCCCEEE----EEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEE-EECCCSSCCCHHHHHHHCCCHHHHHHT
T ss_pred cCCCCCCCCeeEE----EEEEEecCCcccccccccccccccccccchhheeE-EEECCCCCCCHHHHHhcCCCHHHHHhc
Confidence 5899999998888 77777643 45677888877887774 665553 4579998887765
Q ss_pred --CCHH-HHHHHHHHHHHhhCCCCCCcccCCc-HHhHHHHhhccccc
Q psy13232 65 --VSIE-EADKRLHQFVAKYVKPKTAPMVGEY-HTSKELLKDSDHFL 107 (111)
Q Consensus 65 --~s~~-~AE~~ll~fikk~vp~~~~pLaGNS-~~DR~FL~kymP~l 107 (111)
.+.+ +|-.++++|++.. ++....+|-|+ .+|+.||.+.+.+.
T Consensus 96 g~p~~~~ev~~~~~~fl~~~-~~~~~lVaHNav~FD~~fL~~~~~r~ 141 (242)
T 3mxm_B 96 GRQRFDDNLAILLRAFLQRQ-PQPCCLVAHNGDRYDFPLLQTELARL 141 (242)
T ss_dssp TCCCSCHHHHHHHHHHHHTS-CSSEEEEETTTTTTHHHHHHHHHHTS
T ss_pred CCCchhHHHHHHHHHHHhcC-CCCCEEEEcCChHhhHHHHHHHHHHc
Confidence 6775 9999999999884 34456788999 99999999987554
No 11
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=98.03 E-value=3.6e-06 Score=62.78 Aligned_cols=92 Identities=13% Similarity=0.152 Sum_probs=66.9
Q ss_pred CCCCCCCcc--ccccHhhhhhheeeCCc-------eeeeeecCHHHHhhccchhhhccccccchHHHHhCCCCHHHHHHH
Q psy13232 3 NIGNRPSNT--ALSSMEQVKAYLQTQGT-------CKCGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKR 73 (111)
Q Consensus 3 ~~~~~p~~~--~l~s~~q~~~~lvTd~G-------~~~vIhqp~~vL~~MdeWc~~~H~~SGL~~~vr~S~~s~~~AE~~ 73 (111)
.||++|.++ ..-+ .+++..|++ +...|++.. ...+.++|++.| |++++..++..+.++|-.+
T Consensus 40 TTGl~~~~d~~~Iie----Igav~v~~~~~~i~~~f~~lV~P~~--~~~i~~~~~~lt---GIt~~~v~~a~~~~~v~~~ 110 (224)
T 2xri_A 40 ATCDKPQIHPQEIIE----FPILKLNGRTMEIESTFHMYVQPVV--HPQLTPFCTELT---GIIQAMVDGQPSLQQVLER 110 (224)
T ss_dssp ECCCC-CCSSCCEEE----EEEEEEETTTCCEEEEEEEECCCSS--SCSCCHHHHHHH---CCCHHHHTTCCCHHHHHHH
T ss_pred cCCCCCCCCCcceEE----EEEEEEecCCcEEeeeeeeEECCCC--CCcCCHHHHHHh---CcCHHHHcCCCCHHHHHHH
Confidence 589999864 6666 677777665 344555432 236889999986 8998888889999999999
Q ss_pred HHHHHHhhCCC--C-CCcccCCcHHhHHH-Hhhc
Q psy13232 74 LHQFVAKYVKP--K-TAPMVGEYHTSKEL-LKDS 103 (111)
Q Consensus 74 ll~fikk~vp~--~-~~pLaGNS~~DR~F-L~ky 103 (111)
+++|++..+-- + .+++|+.+.+|++| |.+.
T Consensus 111 f~~~l~~~~lv~hn~~~~~~t~g~fD~~fll~~~ 144 (224)
T 2xri_A 111 VDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQ 144 (224)
T ss_dssp HHHHHHHTTTTSTTSCEEEEESSSHHHHTHHHHH
T ss_pred HHHHHhhcccccCCCceEEEEeChhhHHHHHHHH
Confidence 99999987431 1 35666666999999 5443
No 12
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=97.97 E-value=8.6e-06 Score=58.73 Aligned_cols=87 Identities=9% Similarity=0.097 Sum_probs=66.2
Q ss_pred CCCCCC-----CccccccHhhhhhheeeCCc------eeeeeecCHHHHhhccchhhhccccccchHHHHhCCCCHHHHH
Q psy13232 3 NIGNRP-----SNTALSSMEQVKAYLQTQGT------CKCGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEAD 71 (111)
Q Consensus 3 ~~~~~p-----~~~~l~s~~q~~~~lvTd~G------~~~vIhqp~~vL~~MdeWc~~~H~~SGL~~~vr~S~~s~~~AE 71 (111)
.||++| .++..-+ .+++..++| ++..|++. ..++++|++.| |++++-.+...+.++|-
T Consensus 18 TTGl~~~~~~~~~~~Iie----ig~v~~~~~~~~~~~f~~lv~P~----~~i~~~~~~i~---GIt~~~l~~~~~~~~v~ 86 (194)
T 2gui_A 18 TTGMNQIGAHYEGHKIIE----IGAVEVVNRRLTGNNFHVYLKPD----RLVDPEAFGVH---GIADEFLLDKPTFAEVA 86 (194)
T ss_dssp ESCCCSSSSTTTTCCEEE----EEEEEEETTEECSCCEEEECCCS----SCCCHHHHHHH---CCCHHHHTTSCCHHHHH
T ss_pred CCCCCCcccCCCCCEEEE----EEEEEEECCeEeccEEEEEECcC----CcCCHHHHHhh---CcCHHHHhCCCCHHHHH
Confidence 589999 4466666 555555443 45556644 26889999998 78888888889999999
Q ss_pred HHHHHHHHhhCCCCCCcccCCc-HHhHHHHhhcccc
Q psy13232 72 KRLHQFVAKYVKPKTAPMVGEY-HTSKELLKDSDHF 106 (111)
Q Consensus 72 ~~ll~fikk~vp~~~~pLaGNS-~~DR~FL~kymP~ 106 (111)
.++++|++. ++|+|.. .+|+.||.+.+.+
T Consensus 87 ~~~~~~l~~------~~lv~hn~~fD~~~L~~~~~~ 116 (194)
T 2gui_A 87 DEFMDYIRG------AELVIHNAAFDIGFMDYEFSL 116 (194)
T ss_dssp HHHHHHHTT------SEEEETTHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC------CeEEEEchHHhHHHHHHHHHH
Confidence 999999864 4688988 9999999987543
No 13
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=97.79 E-value=8.3e-06 Score=59.26 Aligned_cols=87 Identities=15% Similarity=0.181 Sum_probs=63.4
Q ss_pred CCCCCCCcc-ccccHhhhhhheeeCCc--eeeeeecCHHHHhhccchhhhccccccchHHHHhCCCCHHHHHHHHHHHHH
Q psy13232 3 NIGNRPSNT-ALSSMEQVKAYLQTQGT--CKCGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVA 79 (111)
Q Consensus 3 ~~~~~p~~~-~l~s~~q~~~~lvTd~G--~~~vIhqp~~vL~~MdeWc~~~H~~SGL~~~vr~S~~s~~~AE~~ll~fik 79 (111)
.||++|.++ .+.+ .+++..++. ++..|++.. .+.+||++. +|++++..++..+.++|..++++|++
T Consensus 14 TTGl~~~~~~~iie----i~~v~~~g~~i~~~lV~P~~----~i~~~~~~i---~GIt~~~l~~a~~~~~v~~~~~~~l~ 82 (189)
T 1wlj_A 14 MVGLGPHRESGLAR----CSLVNVHGAVLYDKFIRPEG----EITDYRTRV---SGVTPQHMVGATPFAVARLEILQLLK 82 (189)
T ss_dssp EEEETTTTEEEEEE----EEEECTTCCEEEEEEEECSS----CEEECCHHH---HCCCHHHHTTCEEHHHHHHHHHHHHT
T ss_pred CcCcCCCCCceEEE----EEEEeCCCCEEEeeEecCCC----CCCccccCC---CCCCHHHHcCCCCHHHHHHHHHHHHC
Confidence 478888763 3333 233322322 223455432 588899987 58998888889999999999999995
Q ss_pred hhCCCCCCcccCCc-HHhHHHHhhcccc
Q psy13232 80 KYVKPKTAPMVGEY-HTSKELLKDSDHF 106 (111)
Q Consensus 80 k~vp~~~~pLaGNS-~~DR~FL~kymP~ 106 (111)
.++|+|.. .+|++||.+++|+
T Consensus 83 ------~~~lV~hn~~fD~~~L~~~~~~ 104 (189)
T 1wlj_A 83 ------GKLVVGHDLKHDFQALKEDMSG 104 (189)
T ss_dssp ------TSEEEESSHHHHHHHTTCCCTT
T ss_pred ------CCEEEECCcHHHHHHHHHhCCC
Confidence 25899999 9999999999986
No 14
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=97.62 E-value=3.8e-05 Score=59.91 Aligned_cols=93 Identities=5% Similarity=0.015 Sum_probs=67.5
Q ss_pred CCCCC----CCccccccHhhhhhheeeCCc-------eeeeeecCHHHHhhccchhhhccccccchHHHHhCCCCHHHHH
Q psy13232 3 NIGNR----PSNTALSSMEQVKAYLQTQGT-------CKCGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEAD 71 (111)
Q Consensus 3 ~~~~~----p~~~~l~s~~q~~~~lvTd~G-------~~~vIhqp~~vL~~MdeWc~~~H~~SGL~~~vr~S~~s~~~AE 71 (111)
.||++ |.++..-+ .+++..|.+ ++..|++.. -..+.+||++.| |++++..+...+.++|-
T Consensus 87 TTGl~~~~~~~~~~IIe----IgaV~v~~~~g~i~~~f~~lV~P~~--~~~i~~~~~~ih---GIt~e~v~~ap~~~evl 157 (299)
T 1zbh_A 87 ATCEEGNPPEFVHEIIE----FPVVLLNTHTLEIEDTFQQYVRPEI--NTQLSDFCISLT---GITQDQVDRADTFPQVL 157 (299)
T ss_dssp ECCCTTCCTTCCCCEEE----EEEEEEETTTCCEEEEEEEEBCCSS--SCSCCHHHHHHH---CCCHHHHHTSBCHHHHH
T ss_pred cccCCCCCCCCCCceEE----EEEEEEECCCCeEeeeeeeeecCCC--CCCCCHHHHHHh---CCCHHHHhcCCCHHHHH
Confidence 47886 45666666 667766642 344565543 147889999998 78988888889999999
Q ss_pred HHHHHHHHhh-CC-CCCCcccCCcHHhHH-HHhhcc
Q psy13232 72 KRLHQFVAKY-VK-PKTAPMVGEYHTSKE-LLKDSD 104 (111)
Q Consensus 72 ~~ll~fikk~-vp-~~~~pLaGNS~~DR~-FL~kym 104 (111)
.++++|++.+ ++ ++...+|.|..+|+. ||.+.+
T Consensus 158 ~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~ 193 (299)
T 1zbh_A 158 KKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQC 193 (299)
T ss_dssp HHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHH
T ss_pred HHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHH
Confidence 9999999987 32 223455556699999 998753
No 15
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=97.33 E-value=5e-05 Score=63.98 Aligned_cols=93 Identities=16% Similarity=0.096 Sum_probs=66.1
Q ss_pred CCCCCCCccccccHhhhhhheeeC-Cc------eeeeeecCHHHHhhccchhhhccccccchHHH-HhCCCCHHHHHHHH
Q psy13232 3 NIGNRPSNTALSSMEQVKAYLQTQ-GT------CKCGLYYNEEVLQNMNEWCVEHHNASGLTDRV-RASSVSIEEADKRL 74 (111)
Q Consensus 3 ~~~~~p~~~~l~s~~q~~~~lvTd-~G------~~~vIhqp~~vL~~MdeWc~~~H~~SGL~~~v-r~S~~s~~~AE~~l 74 (111)
.||++|..+..-+ .++|.+| +| ++..|+++..++-. .+.+ . -+|++++- ......+++|-.++
T Consensus 18 TTGl~p~~d~IIE----IgaV~vd~~g~ii~~~f~~lVkP~~~ilp~-p~a~-~---IhGIT~e~l~~ap~~~~evl~~f 88 (482)
T 2qxf_A 18 TFGTHPALDRPAQ----FAAIRTDSEFNVIGEPEVFYCKPADDYLPQ-PGAV-L---ITGITPQEARAKGENEAAFAARI 88 (482)
T ss_dssp ESSSCTTTSCEEE----EEEEEECTTSCBCSCCEEEEBCCCTTCCCC-HHHH-H---HHCCCHHHHHHHCBCHHHHHHHH
T ss_pred CCCCCCCCCeEEE----EEEEEEECCCeEEeeeeEEEECCCCCCCCC-HHHH-H---HhCCCHHHHhcCCCCHHHHHHHH
Confidence 5899999888888 7888877 33 44556655443221 1233 3 35788664 44577889999999
Q ss_pred HHHHHhhCCCCCCcccCCc-HHhHHHHhhccccc
Q psy13232 75 HQFVAKYVKPKTAPMVGEY-HTSKELLKDSDHFL 107 (111)
Q Consensus 75 l~fikk~vp~~~~pLaGNS-~~DR~FL~kymP~l 107 (111)
++|+.+ ++.+.+|.|| .+|+.||.+.+.+.
T Consensus 89 ~~~l~~---~~~~lVaHNs~~FD~~fL~~~~~r~ 119 (482)
T 2qxf_A 89 HSLFTV---PKTCILGYNNVRFDDEVTRNIFYRN 119 (482)
T ss_dssp HHHHTS---TTEEEEESSTTTTHHHHHHHHHHHT
T ss_pred HHHHcC---CCCEEEEECCHHHHHHHHHHHHHHh
Confidence 999975 4566788899 99999999876543
No 16
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=97.19 E-value=0.00018 Score=58.01 Aligned_cols=93 Identities=6% Similarity=0.051 Sum_probs=65.8
Q ss_pred CCCCC----CCccccccHhhhhhheeeCCc-------eeeeeecCHHHHhhccchhhhccccccchHHHHhCCCCHHHHH
Q psy13232 3 NIGNR----PSNTALSSMEQVKAYLQTQGT-------CKCGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEAD 71 (111)
Q Consensus 3 ~~~~~----p~~~~l~s~~q~~~~lvTd~G-------~~~vIhqp~~vL~~MdeWc~~~H~~SGL~~~vr~S~~s~~~AE 71 (111)
.||++ |..+..-+ .+++..|.+ +...|.+... ..+.++|++.| |++++-.+...+.++|-
T Consensus 137 TTGl~~~~~~~~deIIE----IgaV~vd~~~g~i~~~f~~lVkP~~~--~~I~~~~t~ih---GIT~e~v~~ap~~~eVl 207 (349)
T 1zbu_A 137 ATCEEGNPPEFVHEIIE----FPVVLLNTHTLEIEDTFQQYVRPEIN--TQLSDFCISLT---GITQDQVDRADTFPQVL 207 (349)
T ss_dssp ECCCTTCCTTCCCCEEE----CCEEEEETTTTEEEEEECCBEECSSS--CSCCHHHHHHH---CCCHHHHHTSEEHHHHH
T ss_pred cCCCCCcCCCCCCeEEE----EEEEEEECCCceEeEEEEEEECCCCC--CCCCHHHHHHh---CCCHHHHhCCCCHHHHH
Confidence 47885 45566666 666666532 3334554431 36889999998 78888877889999999
Q ss_pred HHHHHHHHhh-CCCC-CCcccCCcHHhHH-HHhhcc
Q psy13232 72 KRLHQFVAKY-VKPK-TAPMVGEYHTSKE-LLKDSD 104 (111)
Q Consensus 72 ~~ll~fikk~-vp~~-~~pLaGNS~~DR~-FL~kym 104 (111)
.++++|++.+ ++.+ ...+|-|..+|+. ||.+.+
T Consensus 208 ~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~ 243 (349)
T 1zbu_A 208 KKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQC 243 (349)
T ss_dssp HHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHH
T ss_pred HHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHH
Confidence 9999999887 3322 3445556699999 998853
No 17
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=96.91 E-value=0.0006 Score=53.68 Aligned_cols=93 Identities=8% Similarity=0.095 Sum_probs=64.0
Q ss_pred CCCCCCCcc---ccccHhhhhhheeeC--Cc-------eeeeeecCHHHHhhccchhhhccccccchHHHHhCCCCHHHH
Q psy13232 3 NIGNRPSNT---ALSSMEQVKAYLQTQ--GT-------CKCGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEA 70 (111)
Q Consensus 3 ~~~~~p~~~---~l~s~~q~~~~lvTd--~G-------~~~vIhqp~~vL~~MdeWc~~~H~~SGL~~~vr~S~~s~~~A 70 (111)
.||++|..+ ..-+ .+++..| .| ++..|++... ..+.++|++.| |++++-.+...+.++|
T Consensus 28 TTGl~~~~d~~~eIIE----IgaV~vd~~~g~i~~~~~f~~lV~P~~~--p~i~~~~~~lt---GIt~e~v~~ap~~~ev 98 (308)
T 3cg7_A 28 TTSDAANQDYPCEVIQ----FAIVAYDVPNDKIREDISFNKYVKPVLN--RTLTKNCVDFT---GIPQRSIDTADTFDVV 98 (308)
T ss_dssp ECCBTTBCSCCCCEEE----EEEEEEETTTTEEEEEEEEEEECBCSSB--CSCCHHHHHHH---CCCHHHHHTSCBHHHH
T ss_pred cCCCCCCCCCCCCeEE----EEEEEEEcCCCEEeeccceeeEECCCCC--CCCCHHHHHHc---CCCHHHHhcCCCHHHH
Confidence 478888765 4444 4455543 22 3334444321 23788999876 7888887889999999
Q ss_pred HHHHHHHHHhhCC-CCCCcccCCcHHhH-HHHhhcc
Q psy13232 71 DKRLHQFVAKYVK-PKTAPMVGEYHTSK-ELLKDSD 104 (111)
Q Consensus 71 E~~ll~fikk~vp-~~~~pLaGNS~~DR-~FL~kym 104 (111)
-.++++||+..+. ...+.++.++.+|+ .||.+.+
T Consensus 99 l~~f~~~l~~~~lvahn~~lv~~g~fD~~~fL~~~~ 134 (308)
T 3cg7_A 99 YEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQM 134 (308)
T ss_dssp HHHHHHHHHHHCCCTTSEEEEESSSHHHHTHHHHHH
T ss_pred HHHHHHHHHhCCcCCcceEEeccCcccHHHHHHHHH
Confidence 9999999999853 33346677777898 6998754
No 18
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=73.66 E-value=2.6 Score=30.64 Aligned_cols=54 Identities=15% Similarity=0.345 Sum_probs=38.4
Q ss_pred HHHHhhccchhhhccc--------------cccchH---HHHhCCCCHHHHHHHHHHHHHhhCCCCCCcccCCc
Q psy13232 37 EEVLQNMNEWCVEHHN--------------ASGLTD---RVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGEY 93 (111)
Q Consensus 37 ~~vL~~MdeWc~~~H~--------------~SGL~~---~vr~S~~s~~~AE~~ll~fikk~vp~~~~pLaGNS 93 (111)
+-++.||.+-|+.+|. .+|=++ -+.+...+.++.|..+-.||++|| .|+-|||.
T Consensus 43 KTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id~~rlii~G~~~~~~i~~~L~~yI~~yV---lC~~C~sP 113 (148)
T 2d74_B 43 KTIIENFKDIADALNRDPQHLLKFLLREIATAGTLEGRRVVLQGRFTPYLIANKLKKYIKEYV---ICPVCGSP 113 (148)
T ss_dssp EEEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEETTEEEESSCCCHHHHHHHHHHHHHHHS---SCSSSCCT
T ss_pred eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecCCEEEEEeeeCHHHHHHHHHHHHHHEE---ECCCCCCc
Confidence 3455667777776654 333332 123467899999999999999999 78888886
No 19
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=69.75 E-value=4.8 Score=24.57 Aligned_cols=31 Identities=10% Similarity=0.262 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCcccCCc-HHh
Q psy13232 64 SVSIEEADKRLHQFVAKYVKPKTAPMVGEY-HTS 96 (111)
Q Consensus 64 ~~s~~~AE~~ll~fikk~vp~~~~pLaGNS-~~D 96 (111)
..|.+| ++.|++||.+|-+.+ .+..||+ +.+
T Consensus 4 ~FT~ed-D~~L~~~v~~~~~~~-~~~~Gn~iwk~ 35 (59)
T 1fex_A 4 AFTDAD-DVAILTYVKENARSP-SSVTGNALWKA 35 (59)
T ss_dssp CCCHHH-HHHHHHHHHHTCCST-TTTTSSHHHHH
T ss_pred CCCHHH-HHHHHHHHHHhcccc-CCCccHHHHHH
Confidence 345544 567899999997654 4788999 865
No 20
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.04 E-value=3 Score=30.59 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=24.7
Q ss_pred HhCCCCHHHHHHHHHHHHHhhCCCCCCcccCCc
Q psy13232 61 RASSVSIEEADKRLHQFVAKYVKPKTAPMVGEY 93 (111)
Q Consensus 61 r~S~~s~~~AE~~ll~fikk~vp~~~~pLaGNS 93 (111)
.+...+.++.|..|-.||++|| .|+-|||.
T Consensus 83 i~G~~~~~~i~~~L~~yI~~YV---lC~~C~sP 112 (157)
T 2e9h_A 83 VNGSHEANKLQDMLDGFIKKFV---LCPECENP 112 (157)
T ss_dssp EEBCCCHHHHHHHHHHHHHHTT---SCTTTCCS
T ss_pred EEeeeCHHHHHHHHHHHHHHeE---ECCCCCCC
Confidence 4567899999999999999998 56666664
No 21
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=63.17 E-value=3.9 Score=30.38 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=23.8
Q ss_pred ccccchHH-----HHhCCCCHHHHHHHHHHHHHhhC
Q psy13232 52 NASGLTDR-----VRASSVSIEEADKRLHQFVAKYV 82 (111)
Q Consensus 52 ~~SGL~~~-----vr~S~~s~~~AE~~ll~fikk~v 82 (111)
+.+|=+++ +.+...+.++.|..|-.||++||
T Consensus 62 Gt~g~id~~~~rliinG~~~~~~i~~~L~~yI~~YV 97 (170)
T 2g2k_A 62 GAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFV 97 (170)
T ss_dssp TCCCEECTTTCCEEEEBCCCHHHHHHHHHHHHHHHH
T ss_pred CCceeecCCCCEEEEEeeeCHHHHHHHHHHHHHHeE
Confidence 44555542 34567889999999999999998
No 22
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=52.77 E-value=4.8 Score=26.48 Aligned_cols=12 Identities=17% Similarity=0.338 Sum_probs=9.9
Q ss_pred CCCCcccCCc-HH
Q psy13232 84 PKTAPMVGEY-HT 95 (111)
Q Consensus 84 ~~~~pLaGNS-~~ 95 (111)
.+.||+||+. +.
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 6789999998 54
No 23
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=46.96 E-value=2.8 Score=29.99 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=37.1
Q ss_pred HHHHhhccchhhhccc--------------cccchH---HHHhCCCCHHHHHHHHHHHHHhhCCCCCCcccCCc
Q psy13232 37 EEVLQNMNEWCVEHHN--------------ASGLTD---RVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGEY 93 (111)
Q Consensus 37 ~~vL~~MdeWc~~~H~--------------~SGL~~---~vr~S~~s~~~AE~~ll~fikk~vp~~~~pLaGNS 93 (111)
+-++.||.+-|+.+|. .+|=++ -+.+...+.++.|..+-.||++|| .|+-|||.
T Consensus 41 kTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id~~rlii~G~~~~~~i~~~L~~yI~~yV---lC~~C~sP 111 (138)
T 1nee_A 41 RTFIQNFREVADALNRDPQHLLKFLLRELGTAGNLEGGRAILQGKFTHFLINERIEDYVNKFV---ICHECNRP 111 (138)
T ss_dssp EEEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCBTTTEEEESSCSSSHHHHHHHHHHTHHH---HHTCCSSC
T ss_pred cEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecCCEEEEEeeeCHHHHHHHHHHHHhhEE---ECCCCCCc
Confidence 3455666666666643 344333 123457788999999999999998 68888886
No 24
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A
Probab=34.42 E-value=64 Score=22.15 Aligned_cols=53 Identities=15% Similarity=0.080 Sum_probs=36.3
Q ss_pred cccccchHHHHhCCCCHHHHHHHHHHHHHhhCCCCCCcccCCc-H--HhHHHHhhcccccc
Q psy13232 51 HNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGEY-H--TSKELLKDSDHFLV 108 (111)
Q Consensus 51 H~~SGL~~~vr~S~~s~~~AE~~ll~fikk~vp~~~~pLaGNS-~--~DR~FL~kymP~lv 108 (111)
||.|.-. ...+|+++.-+.+.+++++. ..++..|+|.| + .=-.+..++-|+.|
T Consensus 60 ~G~S~~~----~~~~~~~~~~~d~~~~l~~l-~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v 115 (276)
T 1zoi_A 60 HGRSSQV----WDGHDMDHYADDVAAVVAHL-GIQGAVHVGHSTGGGEVVRYMARHPEDKV 115 (276)
T ss_dssp STTSCCC----SSCCSHHHHHHHHHHHHHHH-TCTTCEEEEETHHHHHHHHHHHHCTTSCC
T ss_pred CCCCCCC----CCCCCHHHHHHHHHHHHHHh-CCCceEEEEECccHHHHHHHHHHhCHHhe
Confidence 7777531 23578888777888888775 34567899999 3 34456777766644
No 25
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni}
Probab=31.89 E-value=20 Score=23.90 Aligned_cols=29 Identities=7% Similarity=0.127 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCcccCCc
Q psy13232 65 VSIEEADKRLHQFVAKYVKPKTAPMVGEY 93 (111)
Q Consensus 65 ~s~~~AE~~ll~fikk~vp~~~~pLaGNS 93 (111)
.+.++.-+.+.+++++..+.++..|+|.|
T Consensus 69 ~~~~~~~~~~~~~l~~~~~~~~~~l~G~S 97 (272)
T 3fsg_A 69 STSDNVLETLIEAIEEIIGARRFILYGHS 97 (272)
T ss_dssp CSHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEEeC
Confidence 78888888999999986566778899999
No 26
>2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A*
Probab=29.41 E-value=25 Score=24.61 Aligned_cols=53 Identities=6% Similarity=-0.024 Sum_probs=33.4
Q ss_pred cccccchHHHHhCCCCHHHHHHHHHHHHHhhCCCCCCcccCCc-H--HhHHHHhhccccc
Q psy13232 51 HNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGEY-H--TSKELLKDSDHFL 107 (111)
Q Consensus 51 H~~SGL~~~vr~S~~s~~~AE~~ll~fikk~vp~~~~pLaGNS-~--~DR~FL~kymP~l 107 (111)
||.|.-. ....+|+++--+.+.+|+++.-..+++.|+|+| + .=-.+..+| |+.
T Consensus 48 ~G~S~~~---~~~~~~~~~~a~dl~~~l~~l~~~~~~~lvGhSmGG~va~~~a~~~-p~~ 103 (264)
T 2wfl_A 48 AGINPRR---LDEIHTFRDYSEPLMEVMASIPPDEKVVLLGHSFGGMSLGLAMETY-PEK 103 (264)
T ss_dssp STTCSCC---GGGCCSHHHHHHHHHHHHHHSCTTCCEEEEEETTHHHHHHHHHHHC-GGG
T ss_pred CCCCCCC---cccccCHHHHHHHHHHHHHHhCCCCCeEEEEeChHHHHHHHHHHhC-hhh
Confidence 6666421 123468888888899999875224678899999 3 334444444 543
No 27
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=28.81 E-value=22 Score=27.84 Aligned_cols=55 Identities=13% Similarity=0.189 Sum_probs=31.4
Q ss_pred hhccccccchHHHH---hCCCCHHHHHHHHHHHHHhhCCCCCCcccCCc-HHhHHHHhh
Q psy13232 48 VEHHNASGLTDRVR---ASSVSIEEADKRLHQFVAKYVKPKTAPMVGEY-HTSKELLKD 102 (111)
Q Consensus 48 ~~~H~~SGL~~~vr---~S~~s~~~AE~~ll~fikk~vp~~~~pLaGNS-~~DR~FL~k 102 (111)
-.||-.|||+-.+. .....+++-|++.++.|++.+....-++.+-| +.|=..|..
T Consensus 6 ~~~~~~~~~~~~~~~m~~~~~~L~~le~~a~~ilr~~~~~~~~ivVa~SGGkDS~vLL~ 64 (325)
T 1zun_A 6 HHHHHSSGLVPRGSHMVDKLTHLKQLEAESIHIIREVAAEFDNPVMLYSIGKDSAVMLH 64 (325)
T ss_dssp --------CCCCCGGGSCCCCHHHHHHHHHHHHHHHHHHHCSSEEEECCSSHHHHHHHH
T ss_pred ccccccCCeeccHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHH
Confidence 35788999984443 33445777777777777766543345678899 999776654
No 28
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=28.27 E-value=21 Score=23.47 Aligned_cols=23 Identities=4% Similarity=-0.061 Sum_probs=18.1
Q ss_pred CCCCcccCCc-HHhHHHHhhccccc
Q psy13232 84 PKTAPMVGEY-HTSKELLKDSDHFL 107 (111)
Q Consensus 84 ~~~~pLaGNS-~~DR~FL~kymP~l 107 (111)
-.-|+-.|+| ++ |.||.++.|.+
T Consensus 24 ~~yc~~~~sS~G~-R~Fl~~~l~~~ 47 (102)
T 1s3a_A 24 IHLCQRSPGSQGV-RDFIEKRYVEL 47 (102)
T ss_dssp EECCSSSCCCHHH-HHHHHHTHHHH
T ss_pred EEEcCCCCCchhH-HHHHHHhhHHH
Confidence 3447888989 66 99999988875
No 29
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=27.73 E-value=51 Score=24.51 Aligned_cols=57 Identities=9% Similarity=0.266 Sum_probs=32.4
Q ss_pred CHHHHhhccchhhhccccccchHHHHh---CCCCHHHHHHHHHHHHHhhCCCCCCcccCCc
Q psy13232 36 NEEVLQNMNEWCVEHHNASGLTDRVRA---SSVSIEEADKRLHQFVAKYVKPKTAPMVGEY 93 (111)
Q Consensus 36 p~~vL~~MdeWc~~~H~~SGL~~~vr~---S~~s~~~AE~~ll~fikk~vp~~~~pLaGNS 93 (111)
+++.-+.+ .+...--...-+-++.++ ...|.+..-+++++++++-+..+...-.|+|
T Consensus 343 ~~~la~~i-~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~~~~g~~ 402 (413)
T 3oy2_A 343 VDDLVEAF-TFFKDEKNRKEYGKRVQDFVKTKPTWDDISSDIIDFFNSLLRVESRETPGNE 402 (413)
T ss_dssp HHHHHHHH-HHTTSHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhcCCCCCCCc
Confidence 45555778 776643333334444433 5789999999999999999876655666777
No 30
>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum}
Probab=27.47 E-value=14 Score=25.32 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=24.8
Q ss_pred hhccccccchHHHHhCCCCH-HHHHHHHHHHHHhh
Q psy13232 48 VEHHNASGLTDRVRASSVSI-EEADKRLHQFVAKY 81 (111)
Q Consensus 48 ~~~H~~SGL~~~vr~S~~s~-~~AE~~ll~fikk~ 81 (111)
-.||-.|||+.+-+.-.+++ +.|.+++.+++++.
T Consensus 6 ~~~~~~~~~~~~~~~m~ItiT~~Aa~~ik~ll~~~ 40 (125)
T 2k4z_A 6 HHHHHSSGLVPRGSHMMFKLTPAAAEQVLKAAKQG 40 (125)
T ss_dssp CSSSSCCSTTTCCCSSCEEECHHHHHHHHHHHHHS
T ss_pred ccccccccccccCCCCEEEECHHHHHHHHHHHhhC
Confidence 45788999998887776665 55666677777654
No 31
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=27.23 E-value=49 Score=25.28 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=33.3
Q ss_pred HHHHhhccchhhhc-cc----------------cccchHHHHhCCCCHHHHHHHHHHHHH
Q psy13232 37 EEVLQNMNEWCVEH-HN----------------ASGLTDRVRASSVSIEEADKRLHQFVA 79 (111)
Q Consensus 37 ~~vL~~MdeWc~~~-H~----------------~SGL~~~vr~S~~s~~~AE~~ll~fik 79 (111)
++.|+.|-+|+.++ |- ..=|+.=+|+.+.+++.|.+++.+|++
T Consensus 59 ~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~ 118 (316)
T 3hx3_A 59 EEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVN 118 (316)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccccccccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45788999999886 41 122556668889999999999999983
No 32
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=27.05 E-value=63 Score=21.05 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=40.5
Q ss_pred eeeecCHHHHhhccchhhhccccccchHHHHhCCCCHHHHHHHHHHHHHhhCCCCCCcccCCc-HHhHHHHhhc
Q psy13232 31 CGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGEY-HTSKELLKDS 103 (111)
Q Consensus 31 ~vIhqp~~vL~~MdeWc~~~H~~SGL~~~vr~S~~s~~~AE~~ll~fikk~vp~~~~pLaGNS-~~DR~FL~ky 103 (111)
+.|.++++++++|-|-|+. -.++.++--.+..+|-... .|..|=-.|= -+.|.||.|.
T Consensus 15 Fgi~c~d~v~eKl~ElC~~-------------y~~~~~e~V~ew~Afs~s~--~~~~lt~~~L~~fE~e~l~kr 73 (78)
T 4e2i_2 15 FGLDCEEALIEKLVELCVQ-------------YGQNEEGMVGELIAFCTST--HKVGLTSEILNSFEHEFLSKR 73 (78)
T ss_dssp TTCCCCHHHHHHHHTHHHH-------------SCCCHHHHHHHHTTHHHHT--TCCCCCTTTTTGGGTTTSGGG
T ss_pred cCCCCcHHHHHHHHHHHHH-------------cCCCHHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHH
Confidence 4577888999999998873 2456666666677776554 4555655666 7778888774
No 33
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=26.47 E-value=55 Score=21.29 Aligned_cols=21 Identities=10% Similarity=0.221 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHhhCCCCC
Q psy13232 65 VSIEEADKRLHQFVAKYVKPKT 86 (111)
Q Consensus 65 ~s~~~AE~~ll~fikk~vp~~~ 86 (111)
...+++|.++|+++++| |.|.
T Consensus 10 ~~~~~ie~~IL~l~~~~-P~GI 30 (81)
T 2dk8_A 10 ADPVEIENRIIELCHQF-PHGI 30 (81)
T ss_dssp SCHHHHHHHHHHHHHHC-SSCE
T ss_pred ccHHHHHHHHHHHHHhC-CCCC
Confidence 34688999999999998 5443
No 34
>1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A*
Probab=25.01 E-value=29 Score=24.56 Aligned_cols=53 Identities=6% Similarity=-0.045 Sum_probs=33.9
Q ss_pred cccccchHHHHhCCCCHHHHHHHHHHHHHhhCCCCCCcccCCc-H--HhHHHHhhccccc
Q psy13232 51 HNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGEY-H--TSKELLKDSDHFL 107 (111)
Q Consensus 51 H~~SGL~~~vr~S~~s~~~AE~~ll~fikk~vp~~~~pLaGNS-~--~DR~FL~kymP~l 107 (111)
||.|.-. ....+|+++--+.+.+++++.-...++.|+|+| + .=-.+..+| |+.
T Consensus 42 ~G~S~~~---~~~~~~~~~~a~dl~~~l~~l~~~~~~~lvGhSmGG~va~~~a~~~-P~~ 97 (273)
T 1xkl_A 42 SGTDLRK---IEELRTLYDYTLPLMELMESLSADEKVILVGHSLGGMNLGLAMEKY-PQK 97 (273)
T ss_dssp STTCCCC---GGGCCSHHHHHHHHHHHHHTSCSSSCEEEEEETTHHHHHHHHHHHC-GGG
T ss_pred CCCCccC---cccccCHHHHHHHHHHHHHHhccCCCEEEEecCHHHHHHHHHHHhC-hHh
Confidence 6666321 123478888888899999875223577899999 3 345555555 543
No 35
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=24.79 E-value=31 Score=27.04 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=14.1
Q ss_pred hhccccccchHHHHhCCCCHHHHHHHHHHHHHhhCC
Q psy13232 48 VEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVK 83 (111)
Q Consensus 48 ~~~H~~SGL~~~vr~S~~s~~~AE~~ll~fikk~vp 83 (111)
-.||-.|||+.......-+.++-..++++++++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~P~~~~l~~~l~~~~~~~~~ 41 (353)
T 2ikf_A 6 HHHHHSSGLVPRGSHMPPSPAVVGRSLVNSFKQFVS 41 (353)
T ss_dssp -----------------CCHHHHHHHHHHHTTTTCC
T ss_pred ccccccccceecccCCCCCHHHHHHHHHHHHHHhcC
Confidence 356788888888877777777778888887776654
No 36
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Probab=24.01 E-value=53 Score=21.93 Aligned_cols=53 Identities=9% Similarity=0.013 Sum_probs=34.7
Q ss_pred cccccchHHHHhCCCCHHHHHHHHHHHHHhhCCCCCCcccCCc---HHhHHHHhhccccc
Q psy13232 51 HNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGEY---HTSKELLKDSDHFL 107 (111)
Q Consensus 51 H~~SGL~~~vr~S~~s~~~AE~~ll~fikk~vp~~~~pLaGNS---~~DR~FL~kymP~l 107 (111)
|+.|.-. .....++++.-+.+.+++++.-..+...|+|.| ..=-.+..++ |..
T Consensus 50 ~G~S~~~---~~~~~~~~~~~~~~~~~l~~l~~~~~~~lvGhS~Gg~ia~~~a~~~-p~~ 105 (267)
T 3sty_A 50 SGINPKQ---ALQIPNFSDYLSPLMEFMASLPANEKIILVGHALGGLAISKAMETF-PEK 105 (267)
T ss_dssp STTCSCC---GGGCCSHHHHHHHHHHHHHTSCTTSCEEEEEETTHHHHHHHHHHHS-GGG
T ss_pred CCCCCCc---CCccCCHHHHHHHHHHHHHhcCCCCCEEEEEEcHHHHHHHHHHHhC-hhh
Confidence 6666433 233478988888999999886346778899999 3334444443 443
No 37
>3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A*
Probab=23.39 E-value=51 Score=23.76 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=35.4
Q ss_pred cccccchHHHHhCCCCHHHHHHHHHHHHHhhCCCCCCcccCCc-H--HhHHHHhhcccccc
Q psy13232 51 HNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGEY-H--TSKELLKDSDHFLV 108 (111)
Q Consensus 51 H~~SGL~~~vr~S~~s~~~AE~~ll~fikk~vp~~~~pLaGNS-~--~DR~FL~kymP~lv 108 (111)
||.|.-. ...+|+++.-+.+.+|+++. ..+++.|+|+| + .=-.|-.+| |+.|
T Consensus 66 ~G~S~~~----~~~~~~~~~a~dl~~ll~~l-~~~~~~lvGhS~Gg~va~~~A~~~-P~~v 120 (316)
T 3afi_E 66 FGQSGKP----DIAYRFFDHVRYLDAFIEQR-GVTSAYLVAQDWGTALAFHLAARR-PDFV 120 (316)
T ss_dssp STTSCCC----SSCCCHHHHHHHHHHHHHHT-TCCSEEEEEEEHHHHHHHHHHHHC-TTTE
T ss_pred CCCCCCC----CCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeCccHHHHHHHHHHC-HHhh
Confidence 7777531 24689999999999999875 34678899999 3 344444444 5443
No 38
>1v9v_A KIAA0561 protein; helix bundle, MAST205, microtubule-associated serine/threonine protein kinase, structural genomics; NMR {Homo sapiens} SCOP: a.29.10.1
Probab=23.31 E-value=58 Score=22.83 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCccc
Q psy13232 67 IEEADKRLHQFVAKYVKPKTAPMV 90 (111)
Q Consensus 67 ~~~AE~~ll~fikk~vp~~~~pLa 90 (111)
-+|-|.++.+||..+.|....|+|
T Consensus 11 taQMEErL~~~i~~~~~~~~~~la 34 (114)
T 1v9v_A 11 TAQMEGRLQEFLTAYAPGARLALA 34 (114)
T ss_dssp THHHHHHHHHHHHHSCBTTTBCCS
T ss_pred HHHHHHHHHHHHHhcCccccccch
Confidence 478899999999999998888873
No 39
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=22.78 E-value=19 Score=19.76 Aligned_cols=8 Identities=38% Similarity=1.481 Sum_probs=6.6
Q ss_pred hhccchhh
Q psy13232 41 QNMNEWCV 48 (111)
Q Consensus 41 ~~MdeWc~ 48 (111)
+.|.+||-
T Consensus 14 ekmgdwcc 21 (32)
T 4b2v_A 14 EKMGDWCC 21 (32)
T ss_dssp TTTCCCCS
T ss_pred HHhcchhh
Confidence 57999985
No 40
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=22.70 E-value=47 Score=25.79 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=14.4
Q ss_pred hccccccchH----HHHhCCCCHHHHHHHHHHHHHhhCC
Q psy13232 49 EHHNASGLTD----RVRASSVSIEEADKRLHQFVAKYVK 83 (111)
Q Consensus 49 ~~H~~SGL~~----~vr~S~~s~~~AE~~ll~fikk~vp 83 (111)
.||-+|||+. +...+.....+...+.+.+.++|++
T Consensus 6 ~~~~~~~~~p~~~p~~~~~~~~~~~~~~~a~~~c~~~l~ 44 (401)
T 3g15_A 6 HHHHSSGLVPRGSPQPPADEQPEPRTRRRAYLWCKEFLP 44 (401)
T ss_dssp -------------------CCCCHHHHHHHHHHHHHHSC
T ss_pred ccccccccCCCCCCCCCCCCCCCchHHHHHHHHHHHhCC
Confidence 4688999996 3334444455677778888888876
No 41
>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A*
Probab=22.47 E-value=65 Score=22.85 Aligned_cols=38 Identities=16% Similarity=0.074 Sum_probs=28.7
Q ss_pred cccccchHHHHhCCCCHHHHHHHHHHHHHhhCCCCCCcccCCc
Q psy13232 51 HNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGEY 93 (111)
Q Consensus 51 H~~SGL~~~vr~S~~s~~~AE~~ll~fikk~vp~~~~pLaGNS 93 (111)
||.|.-. ...+|+++--+.+.++++.. ...++.|+|+|
T Consensus 64 hG~S~~~----~~~~~~~~~a~dl~~ll~~l-~~~~~~lvGhS 101 (276)
T 2wj6_A 64 HGLSPSE----VPDFGYQEQVKDALEILDQL-GVETFLPVSHS 101 (276)
T ss_dssp CSSSCCC----CCCCCHHHHHHHHHHHHHHH-TCCSEEEEEEG
T ss_pred CCCCCCC----CCCCCHHHHHHHHHHHHHHh-CCCceEEEEEC
Confidence 7777532 24688988888899999875 34567899999
No 42
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=22.36 E-value=42 Score=25.12 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCC--CCCcccCCc-HHhHHHHhh
Q psy13232 63 SSVSIEEADKRLHQFVAKYVKP--KTAPMVGEY-HTSKELLKD 102 (111)
Q Consensus 63 S~~s~~~AE~~ll~fikk~vp~--~~~pLaGNS-~~DR~FL~k 102 (111)
|....+++.+.+..||++|+.+ ....+.|=| +.|=..+..
T Consensus 2 ~~~~~~~~~~~l~~~l~d~v~~~g~~~vvv~lSGGiDSsv~a~ 44 (249)
T 3p52_A 2 SAMDWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVAT 44 (249)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTSSCSEEEEECCSSHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHH
Confidence 5678899999999999999863 234677888 888776654
No 43
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0
Probab=22.30 E-value=91 Score=21.56 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=36.6
Q ss_pred cccccchHHHHhCCCCHHHHHHHHHHHHHhhCCCCCCcccCCc-HH--hHHHHhhcccccc
Q psy13232 51 HNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGEY-HT--SKELLKDSDHFLV 108 (111)
Q Consensus 51 H~~SGL~~~vr~S~~s~~~AE~~ll~fikk~vp~~~~pLaGNS-~~--DR~FL~kymP~lv 108 (111)
||+|.-- ...+|.++..+.+.++++.. ...+..|+|.| +- =-.++.++.|+.|
T Consensus 65 ~G~S~~~----~~~~~~~~~a~dl~~ll~~l-~~~~~~lvGhS~GG~i~~~~~a~~~p~~v 120 (281)
T 3fob_A 65 FGKSSQP----WEGYEYDTFTSDLHQLLEQL-ELQNVTLVGFSMGGGEVARYISTYGTDRI 120 (281)
T ss_dssp STTSCCC----SSCCSHHHHHHHHHHHHHHT-TCCSEEEEEETTHHHHHHHHHHHHCSTTE
T ss_pred CCCCCCC----ccccCHHHHHHHHHHHHHHc-CCCcEEEEEECccHHHHHHHHHHccccce
Confidence 6666421 23678888778888888765 45668899999 43 4567777767644
No 44
>3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase, catalysis, protonation state, AB initio calculations, substrate bindin; 1.05A {Hevea brasiliensis} SCOP: c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A 3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A 7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A 1dwp_A ...
Probab=22.26 E-value=43 Score=23.32 Aligned_cols=50 Identities=14% Similarity=0.059 Sum_probs=32.0
Q ss_pred cccccchHHHHhCCCCHHHHHHHHHHHHHhhCCCCCCcccCCc-H--HhHHHHhhc
Q psy13232 51 HNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGEY-H--TSKELLKDS 103 (111)
Q Consensus 51 H~~SGL~~~vr~S~~s~~~AE~~ll~fikk~vp~~~~pLaGNS-~--~DR~FL~ky 103 (111)
||.|.-. ....+|+++--+.+.+|+++.-..+++.|+|+| + .=-.|..+|
T Consensus 41 ~G~S~~~---~~~~~~~~~~a~dl~~~l~~l~~~~~~~lvGhSmGG~va~~~a~~~ 93 (257)
T 3c6x_A 41 SGVDPRQ---IEEIGSFDEYSEPLLTFLEALPPGEKVILVGESCGGLNIAIAADKY 93 (257)
T ss_dssp STTCSCC---GGGCCSHHHHTHHHHHHHHTSCTTCCEEEEEEETHHHHHHHHHHHH
T ss_pred CCCCCCC---cccccCHHHHHHHHHHHHHhccccCCeEEEEECcchHHHHHHHHhC
Confidence 6666321 122478888888899999775224578899999 3 344444444
No 45
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=22.16 E-value=73 Score=19.63 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHHhhC
Q psy13232 64 SVSIEEADKRLHQFVAKYV 82 (111)
Q Consensus 64 ~~s~~~AE~~ll~fikk~v 82 (111)
+++.+||...+.+||.+..
T Consensus 7 Gl~v~eA~~~l~~~l~~~~ 25 (82)
T 3fau_A 7 GLHVDEALEHLMRVLEKKT 25 (82)
T ss_dssp TSCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 5789999999999998764
No 46
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=22.07 E-value=35 Score=23.20 Aligned_cols=44 Identities=23% Similarity=0.565 Sum_probs=30.5
Q ss_pred HHhhccchhhhccccccchHHHHhC-CC-CHHHHHHHHHHHHHhhCC-CCCCc
Q psy13232 39 VLQNMNEWCVEHHNASGLTDRVRAS-SV-SIEEADKRLHQFVAKYVK-PKTAP 88 (111)
Q Consensus 39 vL~~MdeWc~~~H~~SGL~~~vr~S-~~-s~~~AE~~ll~fikk~vp-~~~~p 88 (111)
-|.+.++|+.+ +-+.+.+. ++ .+.+.--++++|+++|.. .+.+|
T Consensus 18 fL~~~~dW~ee------~A~~lA~~egI~eLTe~HW~vI~flR~yY~e~~~~P 64 (105)
T 3or1_C 18 FLNAFDDWCPE------WVKYAKGSEGIGAGSADHQKIIDFLQDYYKANGIAP 64 (105)
T ss_dssp CBSCGGGCCHH------HHHHHGGGGTCSSCCHHHHHHHHHHHHHHHHHSSCC
T ss_pred CcCChHhCCHH------HHHHHHHHCCCccCCHHHHHHHHHHHHHHHHHCCCC
Confidence 56678889874 33444333 57 888999999999998754 34454
No 47
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=22.06 E-value=61 Score=19.41 Aligned_cols=15 Identities=33% Similarity=0.671 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhh
Q psy13232 67 IEEADKRLHQFVAKY 81 (111)
Q Consensus 67 ~~~AE~~ll~fikk~ 81 (111)
-+++|.++-+|+++|
T Consensus 5 seeverklkefvrrh 19 (52)
T 1y66_A 5 SEEVERKLKEFVRRH 19 (52)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 368899999999887
No 48
>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12
Probab=21.53 E-value=1.1e+02 Score=20.69 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=34.8
Q ss_pred cccccchHHHHhCCCCHHHHHHHHHHHHHhhCCCCCCcccCCc-H--HhHHHHhhcccccc
Q psy13232 51 HNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGEY-H--TSKELLKDSDHFLV 108 (111)
Q Consensus 51 H~~SGL~~~vr~S~~s~~~AE~~ll~fikk~vp~~~~pLaGNS-~--~DR~FL~kymP~lv 108 (111)
||+|.-. ...++.++.-+.+.++++.. ..++..|+|.| + .=-.++.++.|+.|
T Consensus 57 ~G~S~~~----~~~~~~~~~~~dl~~~l~~l-~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v 112 (273)
T 1a8s_A 57 HGRSSQP----WSGNDMDTYADDLAQLIEHL-DLRDAVLFGFSTGGGEVARYIGRHGTARV 112 (273)
T ss_dssp STTSCCC----SSCCSHHHHHHHHHHHHHHT-TCCSEEEEEETHHHHHHHHHHHHHCSTTE
T ss_pred CCCCCCC----CCCCCHHHHHHHHHHHHHHh-CCCCeEEEEeChHHHHHHHHHHhcCchhe
Confidence 6766421 23578888778888888764 45567899999 4 33455666656543
No 49
>2g3v_A CAG pathogenicity island protein 13; pathogenicity island, type IV secretion system, unknown function; 2.30A {Helicobacter pylori}
Probab=21.37 E-value=21 Score=26.59 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=20.9
Q ss_pred HHhhccchhhhccccccchHHHHh
Q psy13232 39 VLQNMNEWCVEHHNASGLTDRVRA 62 (111)
Q Consensus 39 vL~~MdeWc~~~H~~SGL~~~vr~ 62 (111)
.+..|.++.++||+..|-+++|..
T Consensus 44 qiktmhdffkqmhtnkgaldkvlr 67 (208)
T 2g3v_A 44 QIKTMHDFFKQMHTNKGALDKVLR 67 (208)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchHHHHHH
Confidence 457899999999999999988754
No 50
>2ebf_X Dermonecrotic toxin; pasteurella multocida toxin, trojan horse-like fold; HET: TRE; 1.90A {Pasteurella multocida} SCOP: a.296.1.1 c.150.1.2 d.3.1.17 PDB: 2ec5_A 2ebh_X*
Probab=21.14 E-value=24 Score=31.47 Aligned_cols=33 Identities=6% Similarity=0.053 Sum_probs=24.9
Q ss_pred HHHHHhhCCCCCCcccCCcHHhHHHHhhccccc
Q psy13232 75 HQFVAKYVKPKTAPMVGEYHTSKELLKDSDHFL 107 (111)
Q Consensus 75 l~fikk~vp~~~~pLaGNS~~DR~FL~kymP~l 107 (111)
-++|++-.....+.+.|+||.-++||.+.||.|
T Consensus 360 n~~Le~Lyk~s~GLVIGESHsSkRFIIdNM~~L 392 (746)
T 2ebf_X 360 NERIEKCMNTYRGVAFQNSSKSIDFFLNNLTTF 392 (746)
T ss_dssp HHHHHHHHHTTSEEEEESCHHHHHHHHHTHHHH
T ss_pred HHHHHHHHhcCCceEEeccchhHHHHHHHHHHH
Confidence 344444444567889999977799999999987
No 51
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=20.77 E-value=61 Score=23.20 Aligned_cols=42 Identities=26% Similarity=0.277 Sum_probs=13.8
Q ss_pred hccccccchHHHHhCCCCHHHHHHHHHHHHHhhCCCCCCcccCC
Q psy13232 49 EHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGE 92 (111)
Q Consensus 49 ~~H~~SGL~~~vr~S~~s~~~AE~~ll~fikk~vp~~~~pLaGN 92 (111)
.+|-.|||+.++... .+.++.++ +++-|++--..+.|.=||.
T Consensus 4 ~~~~~~~~~~~~~~~-~~k~~~~~-~l~~L~~~p~N~~CaDCga 45 (144)
T 2p57_A 4 HHHHSSGLVPRGSAE-PNKTEIQT-LFKRLRAVPTNKACFDCGA 45 (144)
T ss_dssp --------------C-CCHHHHHH-HHHHHHHSGGGGBCTTTCC
T ss_pred ccccccCcccccccC-cCHHHHHH-HHHHHhcCCCCCcCCCCcC
Confidence 368899999999864 67777764 4444443212444544543
No 52
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Probab=20.74 E-value=78 Score=22.63 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=31.8
Q ss_pred cccccchHHHHhCCCCHHHHHHHHHHHHHhhCC--CCCCcccCCc-H--HhHHHHhh
Q psy13232 51 HNASGLTDRVRASSVSIEEADKRLHQFVAKYVK--PKTAPMVGEY-H--TSKELLKD 102 (111)
Q Consensus 51 H~~SGL~~~vr~S~~s~~~AE~~ll~fikk~vp--~~~~pLaGNS-~--~DR~FL~k 102 (111)
||.|.-. ....+|+++.-+.+.++++.... .+...|+|.| + .=-.+..+
T Consensus 77 hG~S~~~---~~~~~~~~~~a~dl~~~l~~l~~~~~~~~~lvGhSmGG~ia~~~A~~ 130 (316)
T 3c5v_A 77 HGETKVK---NPEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASS 130 (316)
T ss_dssp STTCBCS---CTTCCCHHHHHHHHHHHHHHHHTTCCCCEEEEEETHHHHHHHHHHHT
T ss_pred CCCCCCC---CccccCHHHHHHHHHHHHHHHhccCCCCeEEEEECHHHHHHHHHHhh
Confidence 7777532 12357898888888899987632 2566799999 3 33444443
No 53
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=20.56 E-value=32 Score=24.08 Aligned_cols=35 Identities=29% Similarity=0.436 Sum_probs=13.5
Q ss_pred hhccccccchHHHHhCCCCHHHHHHHHHHHHHhhC
Q psy13232 48 VEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYV 82 (111)
Q Consensus 48 ~~~H~~SGL~~~vr~S~~s~~~AE~~ll~fikk~v 82 (111)
-.||-.||++..-..-...+.+.+.++|+.|++.-
T Consensus 6 ~~~~~~~~~~~~~~~m~~~ld~~d~~IL~~L~~~~ 40 (171)
T 2e1c_A 6 HHHHHSSGLVPRGSHMRVPLDEIDKKIIKILQNDG 40 (171)
T ss_dssp ------------------CCCHHHHHHHHHHHHCT
T ss_pred ccccccccccccccccccCCCHHHHHHHHHHHHcC
Confidence 35678889886655444456788889999998763
No 54
>1ji8_A Dissimilatory siroheme-sulfite reductase; orthogonal helical bundle, structural genomics, PSI, protein structure initiative; NMR {Pyrobaculum aerophilum} SCOP: d.203.1.1
Probab=20.08 E-value=46 Score=22.97 Aligned_cols=45 Identities=18% Similarity=0.381 Sum_probs=31.5
Q ss_pred HHHhhccchhhhccccccchHHHH-h-CCC-CHHHHHHHHHHHHHhhCC-CCCCc
Q psy13232 38 EVLQNMNEWCVEHHNASGLTDRVR-A-SSV-SIEEADKRLHQFVAKYVK-PKTAP 88 (111)
Q Consensus 38 ~vL~~MdeWc~~~H~~SGL~~~vr-~-S~~-s~~~AE~~ll~fikk~vp-~~~~p 88 (111)
--|.+.++|..+. -..+. + -++ .+.+.--+++.|+++|.. .+.+|
T Consensus 22 GfL~~~~dW~eev------A~~lA~~~egI~eLTe~HW~VI~flR~~Y~e~~~~P 70 (111)
T 1ji8_A 22 CFMQNPEDWDEKV------AEWLARELEGIQKMTEEHWKLVKYLREYWETFGTCP 70 (111)
T ss_dssp GEECCGGGCCHHH------HHHHHHHHTCCSSCCHHHHHHHHHHHHHTTTTSCCC
T ss_pred CCcCChHhCCHHH------HHHHHHhcCCchhcCHHHHHHHHHHHHHHHHHCCCC
Confidence 3577888898753 33333 2 367 889999999999999864 44444
Done!