BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>psy13232
MDNIGNRPSNTALSSMEQVKAYLQTQGTCKCGLYYNEEVLQNMNEWCVEHHNASGLTDRV
RASSVSIEEADKRLHQFVAKYVKPKTAPMVGEYHTSKELLKDSDHFLVFSW

High Scoring Gene Products

Symbol, full name Information P value
rexo2-2
RNA exonuclease 2 		gene from Dictyostelium discoideum 4.4e-13
rexo2-1
RNA exonuclease 2 		gene from Dictyostelium discoideum 4.4e-13
CPS_4379
oligoribonuclease 		protein from Colwellia psychrerythraea 34H 8.4e-10
CG10214 protein from Drosophila melanogaster 2.2e-09
REXO2
Uncharacterized protein 		protein from Gallus gallus 3.4e-09
REXO2
Oligoribonuclease, mitochondrial 		protein from Homo sapiens 5.9e-09
Rexo2
REX2, RNA exonuclease 2 homolog (S. cerevisiae) 		protein from Mus musculus 7.7e-09
Rexo2
RNA exonuclease 2 		gene from Rattus norvegicus 7.7e-09
REXO2
Oligoribonuclease, mitochondrial 		protein from Homo sapiens 9.7e-09
REX2
3'-5' RNA exonuclease 		gene from Saccharomyces cerevisiae 1.2e-08
REXO2
Oligoribonuclease, mitochondrial 		protein from Homo sapiens 1.7e-08
smfn
small fragment nuclease 		gene_product from Danio rerio 1.8e-08
REXO2
Oligoribonuclease, mitochondrial 		protein from Bos taurus 2.2e-08
SO_0592
oligoribonuclease 		protein from Shewanella oneidensis MR-1 8.7e-08
REXO2
Uncharacterized protein 		protein from Canis lupus familiaris 3.1e-07
orn
Oligoribonuclease 		protein from Pseudomonas protegens Pf-5 6.1e-07
REX2 gene_product from Candida albicans 1.4e-06
orn
Oligoribonuclease 		protein from Vibrio cholerae O1 biovar El Tor str. N16961 2.1e-06
VC_0341
oligoribonuclease 		protein from Vibrio cholerae O1 biovar El Tor 2.1e-06
AT2G26970 protein from Arabidopsis thaliana 2.1e-06
CBU_1235
oligoribonuclease 		protein from Coxiella burnetii RSA 493 3.8e-06
orn
oligoribonuclease monomer 		protein from Escherichia coli K-12 2.5e-05
orn
Oligoribonuclease 		protein from Mycobacterium tuberculosis 2.6e-05
MBD6
Methyl-CpG-binding domain protein 6 		protein from Homo sapiens 5.0e-05
MBD6
Methyl-CpG-binding domain protein 6 		protein from Homo sapiens 5.0e-05
MBD6
Methyl-CpG-binding domain protein 6 		protein from Homo sapiens 6.8e-05
MBD5
Methyl-CpG-binding domain protein 5 		protein from Homo sapiens 0.00013
MBD5
Uncharacterized protein 		protein from Bos taurus 0.00013
MBD5
Uncharacterized protein 		protein from Canis lupus familiaris 0.00013
MBD5
Methyl-CpG-binding domain protein 5 		protein from Homo sapiens 0.00017
I3LDD3
Uncharacterized protein 		protein from Sus scrofa 0.00021
Mbd5
methyl-CpG binding domain protein 5 		protein from Mus musculus 0.00026
Mbd5
Protein Mbd5 		protein from Rattus norvegicus 0.00035
mbd5
methyl-CpG binding domain protein 5 		gene_product from Danio rerio 0.00047
sba
six-banded 		protein from Drosophila melanogaster 0.00076

The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy13232
        (111 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

DICTYBASE|DDB_G0273741 - symbol:rexo2-2 "RNA exonuclease ...   172  4.4e-13   1
DICTYBASE|DDB_G0273355 - symbol:rexo2-1 "RNA exonuclease ...   172  4.4e-13   1
TIGR_CMR|CPS_4379 - symbol:CPS_4379 "oligoribonuclease" s...   141  8.4e-10   1
FB|FBgn0039115 - symbol:CG10214 species:7227 "Drosophila ...   137  2.2e-09   1
UNIPROTKB|F1NGJ1 - symbol:REXO2 "Uncharacterized protein"...   137  3.4e-09   1
UNIPROTKB|H0YGR4 - symbol:REXO2 "Oligoribonuclease, mitoc...   133  5.9e-09   1
MGI|MGI:1888981 - symbol:Rexo2 "REX2, RNA exonuclease 2 h...   134  7.7e-09   1
RGD|1304874 - symbol:Rexo2 "REX2, RNA exonuclease 2 homol...   134  7.7e-09   1
UNIPROTKB|Q5U1X1 - symbol:Rexo2 "Oligoribonuclease, mitoc...   134  7.7e-09   1
UNIPROTKB|H0YG54 - symbol:REXO2 "Oligoribonuclease, mitoc...   131  9.7e-09   1
SGD|S000004049 - symbol:REX2 "3'-5' RNA exonuclease" spec...   134  1.2e-08   1
ASPGD|ASPL0000041574 - symbol:AN10348 species:162425 "Eme...   130  1.2e-08   1
UNIPROTKB|Q9Y3B8 - symbol:REXO2 "Oligoribonuclease, mitoc...   131  1.7e-08   1
ZFIN|ZDB-GENE-040426-1709 - symbol:smfn "small fragment n...   132  1.8e-08   1
UNIPROTKB|A2VE52 - symbol:REXO2 "Oligoribonuclease, mitoc...   130  2.2e-08   1
POMBASE|SPBC1347.07 - symbol:rex2 "RNA exonuclease (predi...   127  6.1e-08   1
TIGR_CMR|SO_0592 - symbol:SO_0592 "oligoribonuclease" spe...   122  8.7e-08   1
UNIPROTKB|E2QWT2 - symbol:REXO2 "Uncharacterized protein"...   120  3.1e-07   1
UNIPROTKB|Q4KJ81 - symbol:orn "Oligoribonuclease" species...   114  6.1e-07   1
CGD|CAL0004656 - symbol:REX2 species:5476 "Candida albica...   115  1.4e-06   1
UNIPROTKB|Q9KV17 - symbol:orn "Oligoribonuclease" species...   109  2.1e-06   1
TIGR_CMR|VC_0341 - symbol:VC_0341 "oligoribonuclease" spe...   109  2.1e-06   1
TAIR|locus:2059263 - symbol:AT2G26970 species:3702 "Arabi...   112  2.1e-06   1
TIGR_CMR|CBU_1235 - symbol:CBU_1235 "oligoribonuclease" s...   107  3.8e-06   1
UNIPROTKB|P0A784 - symbol:orn "oligoribonuclease monomer"...   100  2.5e-05   1
UNIPROTKB|P65597 - symbol:orn "Oligoribonuclease" species...   102  2.6e-05   1
UNIPROTKB|F8VU14 - symbol:MBD6 "Methyl-CpG-binding domain...    96  5.0e-05   1
UNIPROTKB|F8VVK7 - symbol:MBD6 "Methyl-CpG-binding domain...    96  5.0e-05   1
UNIPROTKB|H0YHD1 - symbol:MBD6 "Methyl-CpG-binding domain...    96  6.8e-05   1
UNIPROTKB|Q9P267 - symbol:MBD5 "Methyl-CpG-binding domain...    97  0.00013   2
UNIPROTKB|E1BPU6 - symbol:MBD5 "Uncharacterized protein" ...    97  0.00013   2
UNIPROTKB|F1PJZ2 - symbol:MBD5 "Uncharacterized protein" ...    97  0.00013   2
UNIPROTKB|E9PHH0 - symbol:MBD5 "Methyl-CpG-binding domain...    97  0.00017   2
UNIPROTKB|I3LDD3 - symbol:I3LDD3 "Uncharacterized protein...    96  0.00021   1
MGI|MGI:2138934 - symbol:Mbd5 "methyl-CpG binding domain ...    94  0.00026   2
UNIPROTKB|E9PTY4 - symbol:E9PTY4 "Uncharacterized protein...    94  0.00026   2
UNIPROTKB|E9PTQ5 - symbol:E9PTQ5 "Uncharacterized protein...    94  0.00035   2
ZFIN|ZDB-GENE-070209-125 - symbol:zgc:158479 "zgc:158479"...    99  0.00047   1
FB|FBgn0016754 - symbol:sba "six-banded" species:7227 "Dr...    85  0.00076   2


>DICTYBASE|DDB_G0273741 [details] [associations]
            symbol:rexo2-2 "RNA exonuclease 2" species:44689
            "Dictyostelium discoideum" [GO:0005622 "intracellular"
            evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016070 "RNA
            metabolic process" evidence=IC] [GO:0008408 "3'-5' exonuclease
            activity" evidence=ISS] [GO:0005739 "mitochondrion" evidence=ISS]
            [GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR006055
            InterPro:IPR012337 SMART:SM00479 dictyBase:DDB_G0273741
            dictyBase:DDB_G0273355 Pfam:PF00929 GO:GO:0005739
            GenomeReviews:CM000151_GR GO:GO:0003676 EMBL:AAFI02000011
            EMBL:AAFI02000009 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0016070
            GO:GO:0008408 eggNOG:COG1949 KO:K13288 OMA:LEAFFHY
            RefSeq:XP_644487.1 RefSeq:XP_644763.1 ProteinModelPortal:Q556Y2
            STRING:Q556Y2 EnsemblProtists:DDB0305003 EnsemblProtists:DDB0305004
            GeneID:8618865 GeneID:8619111 KEGG:ddi:DDB_G0273355
            KEGG:ddi:DDB_G0273741 ProtClustDB:CLSZ2431156 Uniprot:Q556Y2
        Length = 190

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 33/76 (43%), Positives = 50/76 (65%)

Query:    33 LYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGE 92
             ++ ++EVL+NMN+WC+EHH  SGLT+ VR S +S+EEA+K + +FV K+      P+ G 
Sbjct:    59 IHRSDEVLKNMNDWCIEHHGKSGLTEDVRNSKISLEEAEKIMLEFVRKHTDKGICPLAGN 118

Query:    93 -YHTSKE-LLKDSDHF 106
               H  +  LLK+   F
Sbjct:   119 TVHEDRRFLLKEMPTF 134


>DICTYBASE|DDB_G0273355 [details] [associations]
            symbol:rexo2-1 "RNA exonuclease 2" species:44689
            "Dictyostelium discoideum" [GO:0005622 "intracellular"
            evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016070 "RNA
            metabolic process" evidence=IC] [GO:0008408 "3'-5' exonuclease
            activity" evidence=ISS] [GO:0005739 "mitochondrion" evidence=ISS]
            [GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
            evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
            [GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR006055
            InterPro:IPR012337 SMART:SM00479 dictyBase:DDB_G0273741
            dictyBase:DDB_G0273355 Pfam:PF00929 GO:GO:0005739
            GenomeReviews:CM000151_GR GO:GO:0003676 EMBL:AAFI02000011
            EMBL:AAFI02000009 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0016070
            GO:GO:0008408 eggNOG:COG1949 KO:K13288 OMA:LEAFFHY
            RefSeq:XP_644487.1 RefSeq:XP_644763.1 ProteinModelPortal:Q556Y2
            STRING:Q556Y2 EnsemblProtists:DDB0305003 EnsemblProtists:DDB0305004
            GeneID:8618865 GeneID:8619111 KEGG:ddi:DDB_G0273355
            KEGG:ddi:DDB_G0273741 ProtClustDB:CLSZ2431156 Uniprot:Q556Y2
        Length = 190

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 33/76 (43%), Positives = 50/76 (65%)

Query:    33 LYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGE 92
             ++ ++EVL+NMN+WC+EHH  SGLT+ VR S +S+EEA+K + +FV K+      P+ G 
Sbjct:    59 IHRSDEVLKNMNDWCIEHHGKSGLTEDVRNSKISLEEAEKIMLEFVRKHTDKGICPLAGN 118

Query:    93 -YHTSKE-LLKDSDHF 106
               H  +  LLK+   F
Sbjct:   119 TVHEDRRFLLKEMPTF 134


>TIGR_CMR|CPS_4379 [details] [associations]
            symbol:CPS_4379 "oligoribonuclease" species:167879
            "Colwellia psychrerythraea 34H" [GO:0000292 "RNA fragment catabolic
            process" evidence=ISS] [GO:0008946 "oligonucleotidase activity"
            evidence=ISS] HAMAP:MF_00045 InterPro:IPR006055 InterPro:IPR012337
            InterPro:IPR022894 SMART:SM00479 Pfam:PF00929 GO:GO:0005737
            GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004527
            GO:GO:0090305 InterPro:IPR013520 SUPFAM:SSF53098
            HOGENOM:HOG000246596 eggNOG:COG1949 KO:K13288 OMA:LEAFFHY
            RefSeq:YP_271028.1 HSSP:P0A784 ProteinModelPortal:Q47VZ4 SMR:Q47VZ4
            STRING:Q47VZ4 GeneID:3522950 KEGG:cps:CPS_4379 PATRIC:21471603
            ProtClustDB:PRK05359 BioCyc:CPSY167879:GI48-4388-MONOMER
            Uniprot:Q47VZ4
        Length = 181

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 27/55 (49%), Positives = 34/55 (61%)

Query:    37 EEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
             ++VL NMN WC+EHH  SGLT R R S VS+  A K    FV ++V    +PM G
Sbjct:    52 DDVLDNMNPWCIEHHGKSGLTQRCRDSEVSLAHATKESLAFVQEWVPQGKSPMCG 106


>FB|FBgn0039115 [details] [associations]
            symbol:CG10214 species:7227 "Drosophila melanogaster"
            [GO:0000175 "3'-5'-exoribonuclease activity" evidence=NAS]
            [GO:0008946 "oligonucleotidase activity" evidence=ISS] [GO:0005739
            "mitochondrion" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR006055
            InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 EMBL:AE014297
            GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 GO:GO:0090305
            InterPro:IPR013520 SUPFAM:SSF53098 eggNOG:COG1949 KO:K13288
            OMA:LEAFFHY GeneTree:ENSGT00390000009255 EMBL:AY061251
            RefSeq:NP_651184.1 UniGene:Dm.23336 ProteinModelPortal:Q9VCI0
            SMR:Q9VCI0 DIP:DIP-17679N IntAct:Q9VCI0 MINT:MINT-1548388
            STRING:Q9VCI0 PaxDb:Q9VCI0 PRIDE:Q9VCI0 EnsemblMetazoa:FBtr0084463
            GeneID:42811 KEGG:dme:Dmel_CG10214 UCSC:CG10214-RA
            FlyBase:FBgn0039115 InParanoid:Q9VCI0 OrthoDB:EOG41ZCT5
            PhylomeDB:Q9VCI0 GenomeRNAi:42811 NextBio:830698 Bgee:Q9VCI0
            GermOnline:CG10214 Uniprot:Q9VCI0
        Length = 211

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 24/69 (34%), Positives = 44/69 (63%)

Query:    23 LQTQGTCKCGLYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYV 82
             ++++G C   + + +EV  +MNEWC++HH  SGL DR ++S V++EEA   +  ++ K +
Sbjct:    69 VKSEGPC-FAINHPQEVYDSMNEWCMKHHYNSGLIDRCKSSDVNLEEASNLVLSYLEKNI 127

Query:    83 KPKTAPMVG 91
               +  P+ G
Sbjct:   128 PKRACPLGG 136


>UNIPROTKB|F1NGJ1 [details] [associations]
            symbol:REXO2 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
            [GO:0008408 "3'-5' exonuclease activity" evidence=IEA]
            HAMAP:MF_00045 InterPro:IPR006055 InterPro:IPR012337
            InterPro:IPR022894 SMART:SM00479 Pfam:PF00929 GO:GO:0005739
            GO:GO:0005886 GO:GO:0005730 GO:GO:0003676 InterPro:IPR013520
            SUPFAM:SSF53098 GO:GO:0008408 OMA:LEAFFHY
            GeneTree:ENSGT00390000009255 EMBL:AADN02041797 EMBL:AADN02041798
            IPI:IPI00598739 Ensembl:ENSGALT00000011363 Uniprot:F1NGJ1
        Length = 236

 Score = 137 (53.3 bits), Expect = 3.4e-09, P = 3.4e-09
 Identities = 25/65 (38%), Positives = 38/65 (58%)

Query:    37 EEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGE-YHT 95
             +E+L +M+EWC EHH  SGLT  V+ S +S+++A+     FV +   P   P+ G   H 
Sbjct:    86 DELLDSMSEWCKEHHGKSGLTKAVKESKISLQQAEYEFLSFVRQQTPPGLCPLAGNSVHA 145

Query:    96 SKELL 100
              K+ L
Sbjct:   146 DKKFL 150


>UNIPROTKB|H0YGR4 [details] [associations]
            symbol:REXO2 "Oligoribonuclease, mitochondrial"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
            GO:GO:0005739 GO:GO:0005886 GO:GO:0005730 GO:GO:0003676
            GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 HGNC:HGNC:17851
            ChiTaRS:REXO2 EMBL:AP002373 Ensembl:ENST00000539119 Uniprot:H0YGR4
        Length = 192

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 30/100 (30%), Positives = 52/100 (52%)

Query:     5 GNRPSNTALS---SMEQVKAYLQTQGTCKCGLYYNEEVLQNMNEWCVEHHNASGLTDRVR 61
             G R    A++   SM Q   ++  +G     +   +E+L +M++WC EHH  SGLT  V+
Sbjct:     8 GVREGGAAMAAGESMAQRMVWVDLEGP-NLIIKQPDELLDSMSDWCKEHHGKSGLTKAVK 66

Query:    62 ASSVSIEEADKRLHQFVAKYVKPKTAPMVGE-YHTSKELL 100
              S++++++A+     FV +   P   P+ G   H  K+ L
Sbjct:    67 ESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFL 106


>MGI|MGI:1888981 [details] [associations]
            symbol:Rexo2 "REX2, RNA exonuclease 2 homolog (S.
            cerevisiae)" species:10090 "Mus musculus" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0004518 "nuclease activity"
            evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0006139 "nucleobase-containing
            compound metabolic process" evidence=ISA] [GO:0008408 "3'-5'
            exonuclease activity" evidence=ISA] [GO:0016787 "hydrolase
            activity" evidence=IEA] [GO:0016788 "hydrolase activity, acting on
            ester bonds" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
            InterPro:IPR022894 SMART:SM00479 Pfam:PF00929 MGI:MGI:1888981
            GO:GO:0005739 GO:GO:0005886 GO:GO:0005730 GO:GO:0003676
            InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0008408
            HOGENOM:HOG000246596 eggNOG:COG1949 KO:K13288 OMA:LEAFFHY CTD:25996
            GeneTree:ENSGT00390000009255 HOVERGEN:HBG002323 OrthoDB:EOG437RG0
            EMBL:AK007731 IPI:IPI00173343 RefSeq:NP_077195.2 UniGene:Mm.21911
            ProteinModelPortal:Q9D8S4 SMR:Q9D8S4 STRING:Q9D8S4
            PhosphoSite:Q9D8S4 PaxDb:Q9D8S4 PRIDE:Q9D8S4
            Ensembl:ENSMUST00000034524 GeneID:104444 KEGG:mmu:104444
            UCSC:uc009pia.1 InParanoid:Q9D8S4 NextBio:357130 Bgee:Q9D8S4
            CleanEx:MM_REXO2 Genevestigator:Q9D8S4
            GermOnline:ENSMUSG00000032026 Uniprot:Q9D8S4
        Length = 237

 Score = 134 (52.2 bits), Expect = 7.7e-09, P = 7.7e-09
 Identities = 26/73 (35%), Positives = 42/73 (57%)

Query:    37 EEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGE-YHT 95
             +E+L +M++WC EHH  SGLT  V+ S+V++++A+     FV +   P   P+ G   H 
Sbjct:    87 DELLDSMSDWCKEHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHA 146

Query:    96 SKELL-KDSDHFL 107
              K+ L K    F+
Sbjct:   147 DKKFLDKHMPQFM 159


>RGD|1304874 [details] [associations]
            symbol:Rexo2 "REX2, RNA exonuclease 2 homolog (S. cerevisiae)"
            species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005739
            "mitochondrion" evidence=IEA;ISO] [GO:0005886 "plasma membrane"
            evidence=IEA;ISO] [GO:0006139 "nucleobase-containing compound
            metabolic process" evidence=ISO] [GO:0008408 "3'-5' exonuclease
            activity" evidence=IEA;ISO] InterPro:IPR006055 InterPro:IPR012337
            InterPro:IPR022894 SMART:SM00479 Pfam:PF00929 RGD:1304874
            GO:GO:0005739 GO:GO:0005886 GO:GO:0005730 GO:GO:0003676
            GO:GO:0090305 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0008408
            HOGENOM:HOG000246596 eggNOG:COG1949 KO:K13288 OMA:LEAFFHY CTD:25996
            GeneTree:ENSGT00390000009255 HOVERGEN:HBG002323 OrthoDB:EOG437RG0
            EMBL:BC086420 IPI:IPI00373292 RefSeq:NP_001008327.1
            UniGene:Rn.11496 ProteinModelPortal:Q5U1X1 STRING:Q5U1X1
            PRIDE:Q5U1X1 Ensembl:ENSRNOT00000047633 GeneID:300689
            KEGG:rno:300689 UCSC:RGD:1304874 InParanoid:Q5U1X1 NextBio:647326
            ArrayExpress:Q5U1X1 Genevestigator:Q5U1X1
            GermOnline:ENSRNOG00000018939 Uniprot:Q5U1X1
        Length = 237

 Score = 134 (52.2 bits), Expect = 7.7e-09, P = 7.7e-09
 Identities = 26/73 (35%), Positives = 42/73 (57%)

Query:    37 EEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGE-YHT 95
             +E+L +M++WC EHH  SGLT  V+ S+V++++A+     FV +   P   P+ G   H 
Sbjct:    87 DELLDSMSDWCKEHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHA 146

Query:    96 SKELL-KDSDHFL 107
              K+ L K    F+
Sbjct:   147 DKKFLDKHMPQFM 159


>UNIPROTKB|Q5U1X1 [details] [associations]
            symbol:Rexo2 "Oligoribonuclease, mitochondrial"
            species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR006055 InterPro:IPR012337
            InterPro:IPR022894 SMART:SM00479 Pfam:PF00929 RGD:1304874
            GO:GO:0005739 GO:GO:0005886 GO:GO:0005730 GO:GO:0003676
            GO:GO:0090305 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0008408
            HOGENOM:HOG000246596 eggNOG:COG1949 KO:K13288 OMA:LEAFFHY CTD:25996
            GeneTree:ENSGT00390000009255 HOVERGEN:HBG002323 OrthoDB:EOG437RG0
            EMBL:BC086420 IPI:IPI00373292 RefSeq:NP_001008327.1
            UniGene:Rn.11496 ProteinModelPortal:Q5U1X1 STRING:Q5U1X1
            PRIDE:Q5U1X1 Ensembl:ENSRNOT00000047633 GeneID:300689
            KEGG:rno:300689 UCSC:RGD:1304874 InParanoid:Q5U1X1 NextBio:647326
            ArrayExpress:Q5U1X1 Genevestigator:Q5U1X1
            GermOnline:ENSRNOG00000018939 Uniprot:Q5U1X1
        Length = 237

 Score = 134 (52.2 bits), Expect = 7.7e-09, P = 7.7e-09
 Identities = 26/73 (35%), Positives = 42/73 (57%)

Query:    37 EEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGE-YHT 95
             +E+L +M++WC EHH  SGLT  V+ S+V++++A+     FV +   P   P+ G   H 
Sbjct:    87 DELLDSMSDWCKEHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHA 146

Query:    96 SKELL-KDSDHFL 107
              K+ L K    F+
Sbjct:   147 DKKFLDKHMPQFM 159


>UNIPROTKB|H0YG54 [details] [associations]
            symbol:REXO2 "Oligoribonuclease, mitochondrial"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 Pfam:PF00929
            GO:GO:0005739 GO:GO:0005886 GO:GO:0005730 GO:GO:0003676
            GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 HGNC:HGNC:17851
            ChiTaRS:REXO2 EMBL:AP002373 Ensembl:ENST00000544827 Uniprot:H0YG54
        Length = 197

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query:    37 EEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGE-YHT 95
             +E+L +M++WC EHH  SGLT  V+ S++++++A+     FV +   P   P+ G   H 
Sbjct:    47 DELLDSMSDWCKEHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHE 106

Query:    96 SKELL 100
              K+ L
Sbjct:   107 DKKFL 111


>SGD|S000004049 [details] [associations]
            symbol:REX2 "3'-5' RNA exonuclease" species:4932
            "Saccharomyces cerevisiae" [GO:0000002 "mitochondrial genome
            maintenance" evidence=IGI;IMP] [GO:0005739 "mitochondrion"
            evidence=IEA;IMP;IDA] [GO:0016787 "hydrolase activity"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0004527
            "exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
            evidence=ISS] [GO:0000467 "exonucleolytic trimming to generate
            mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
            (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IGI] [GO:0034475 "U4
            snRNA 3'-end processing" evidence=IGI;IMP] [GO:0034476 "U5 snRNA
            3'-end processing" evidence=IGI] [GO:0004518 "nuclease activity"
            evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
            evidence=IMP] InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
            SGD:S000004049 Pfam:PF00929 GO:GO:0005739 GO:GO:0003676
            EMBL:BK006945 GO:GO:0000002 InterPro:IPR013520 SUPFAM:SSF53098
            GO:GO:0000175 GO:GO:0000467 EMBL:X94607 HOGENOM:HOG000246596
            GO:GO:0034475 GO:GO:0034476 eggNOG:COG1949 KO:K13288
            GeneTree:ENSGT00390000009255 OrthoDB:EOG43R6X0 EMBL:L47977
            EMBL:Z73231 EMBL:AY693005 PIR:S61633 RefSeq:NP_013160.1
            ProteinModelPortal:P54964 SMR:P54964 DIP:DIP-5084N IntAct:P54964
            MINT:MINT-549084 STRING:P54964 PaxDb:P54964 PeptideAtlas:P54964
            EnsemblFungi:YLR059C GeneID:850748 KEGG:sce:YLR059C CYGD:YLR059c
            OMA:RIIEICC NextBio:966876 Genevestigator:P54964 GermOnline:YLR059C
            Uniprot:P54964
        Length = 269

 Score = 134 (52.2 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 21/53 (39%), Positives = 35/53 (66%)

Query:    33 LYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPK 85
             ++Y  EV+  MNEWC+EHH  SGLT +V AS  ++ + +  L +++ +Y+  K
Sbjct:   102 IHYGPEVMNKMNEWCIEHHGNSGLTAKVLASEKTLAQVEDELLEYIQRYIPDK 154


>ASPGD|ASPL0000041574 [details] [associations]
            symbol:AN10348 species:162425 "Emericella nidulans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000002
            "mitochondrial genome maintenance" evidence=IEA] [GO:0034476 "U5
            snRNA 3'-end processing" evidence=IEA] [GO:0000467 "exonucleolytic
            trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
            rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
            [GO:0034475 "U4 snRNA 3'-end processing" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000175
            "3'-5'-exoribonuclease activity" evidence=IEA] InterPro:IPR006055
            InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 EMBL:BN001306
            GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520
            SUPFAM:SSF53098 HOGENOM:HOG000246596 OMA:LEAFFHY
            ProteinModelPortal:C8VJB6 EnsemblFungi:CADANIAT00010222
            Uniprot:C8VJB6
        Length = 194

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 25/81 (30%), Positives = 45/81 (55%)

Query:    33 LYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYV-KPKTAPMVG 91
             ++  +  L +M++WC++ H  +GLT RV+ S+V+ E A   L  ++ +Y+ KP+TA + G
Sbjct:    51 IHVPQSALDSMSQWCIDTHGRTGLTQRVQNSTVTPEAAAADLLAYIKRYIPKPRTALLAG 110

Query:    92 E-YHTSKELLKDSDHFLVFSW 111
                H  K  L    +  +  W
Sbjct:   111 NSVHADKAFLACGPYAAILEW 131


>UNIPROTKB|Q9Y3B8 [details] [associations]
            symbol:REXO2 "Oligoribonuclease, mitochondrial"
            species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
            process" evidence=IDA] [GO:0008408 "3'-5' exonuclease activity"
            evidence=IDA] [GO:0009117 "nucleotide metabolic process"
            evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
            [GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR006055
            InterPro:IPR012337 InterPro:IPR022894 SMART:SM00479 Pfam:PF00929
            GO:GO:0005739 GO:GO:0005886 CleanEx:HS_SFN GO:GO:0005730
            GO:GO:0009117 GO:GO:0003676 InterPro:IPR013520 SUPFAM:SSF53098
            GO:GO:0008408 HOGENOM:HOG000246596 eggNOG:COG1949 KO:K13288
            OMA:LEAFFHY CTD:25996 HOVERGEN:HBG002323 OrthoDB:EOG437RG0
            EMBL:AF151872 EMBL:AL110239 EMBL:CR533500 EMBL:AK223200
            EMBL:BC105024 EMBL:BC105026 EMBL:BC107887 IPI:IPI00032830
            IPI:IPI00217330 PIR:T14770 RefSeq:NP_056338.2 UniGene:Hs.677190
            UniGene:Hs.714231 ProteinModelPortal:Q9Y3B8 SMR:Q9Y3B8
            STRING:Q9Y3B8 PhosphoSite:Q9Y3B8 DMDM:116242694 PaxDb:Q9Y3B8
            PRIDE:Q9Y3B8 DNASU:25996 Ensembl:ENST00000265881 GeneID:25996
            KEGG:hsa:25996 UCSC:uc001poy.3 GeneCards:GC11P114311
            H-InvDB:HIX0010145 HGNC:HGNC:17851 HPA:HPA038450 HPA:HPA038451
            MIM:607149 neXtProt:NX_Q9Y3B8 PharmGKB:PA142671085
            InParanoid:Q9Y3B8 PhylomeDB:Q9Y3B8 ChiTaRS:REXO2 GenomeRNAi:25996
            NextBio:47710 ArrayExpress:Q9Y3B8 Bgee:Q9Y3B8 CleanEx:HS_REXO2
            Genevestigator:Q9Y3B8 GermOnline:ENSG00000076043 Uniprot:Q9Y3B8
        Length = 237

 Score = 131 (51.2 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query:    37 EEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGE-YHT 95
             +E+L +M++WC EHH  SGLT  V+ S++++++A+     FV +   P   P+ G   H 
Sbjct:    87 DELLDSMSDWCKEHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHE 146

Query:    96 SKELL 100
              K+ L
Sbjct:   147 DKKFL 151


>ZFIN|ZDB-GENE-040426-1709 [details] [associations]
            symbol:smfn "small fragment nuclease" species:7955
            "Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0004527 "exonuclease activity" evidence=IEA] [GO:0016788
            "hydrolase activity, acting on ester bonds" evidence=IEA]
            [GO:0005622 "intracellular" evidence=IEA] HAMAP:MF_00045
            InterPro:IPR006055 InterPro:IPR012337 InterPro:IPR022894
            SMART:SM00479 Pfam:PF00929 ZFIN:ZDB-GENE-040426-1709 GO:GO:0003676
            GO:GO:0005622 GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098
            GeneTree:ENSGT00390000009255 EMBL:CU633836 IPI:IPI00487828
            Ensembl:ENSDART00000003435 ArrayExpress:F1QNX9 Bgee:F1QNX9
            Uniprot:F1QNX9
        Length = 259

 Score = 132 (51.5 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 22/65 (33%), Positives = 38/65 (58%)

Query:    37 EEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGE-YHT 95
             +++L  M++WC EHH  SGLT  VR S +++++A+     F+ ++  P   P+ G   H 
Sbjct:   113 DDLLDGMSDWCKEHHGKSGLTQAVRDSHITLQQAEYEFLSFIRQHTPPGVCPLAGNSVHA 172

Query:    96 SKELL 100
              K+ L
Sbjct:   173 DKKFL 177


>UNIPROTKB|A2VE52 [details] [associations]
            symbol:REXO2 "Oligoribonuclease, mitochondrial"
            species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
            [GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0005886
            "plasma membrane" evidence=IEA] [GO:0005730 "nucleolus"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR006055 InterPro:IPR012337 InterPro:IPR022894
            SMART:SM00479 Pfam:PF00929 GO:GO:0005739 GO:GO:0005886
            GO:GO:0005730 GO:GO:0003676 GO:GO:0090305 InterPro:IPR013520
            SUPFAM:SSF53098 GO:GO:0008408 HOGENOM:HOG000246596 eggNOG:COG1949
            KO:K13288 OMA:LEAFFHY EMBL:BC133575 IPI:IPI00708018
            RefSeq:NP_001075204.1 UniGene:Bt.57665 ProteinModelPortal:A2VE52
            STRING:A2VE52 PRIDE:A2VE52 Ensembl:ENSBTAT00000007680 GeneID:540139
            KEGG:bta:540139 CTD:25996 GeneTree:ENSGT00390000009255
            HOVERGEN:HBG002323 InParanoid:A2VE52 OrthoDB:EOG437RG0
            NextBio:20878440 Uniprot:A2VE52
        Length = 237

 Score = 130 (50.8 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 23/65 (35%), Positives = 39/65 (60%)

Query:    37 EEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGE-YHT 95
             +E+L +M++WC EHH  SGLT  V+ S++++++A+     FV +   P   P+ G   H 
Sbjct:    87 DELLDSMSDWCKEHHGKSGLTKAVKESTMTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHA 146

Query:    96 SKELL 100
              K+ L
Sbjct:   147 DKKFL 151


>POMBASE|SPBC1347.07 [details] [associations]
            symbol:rex2 "RNA exonuclease (predicted)" species:4896
            "Schizosaccharomyces pombe" [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005739 "mitochondrion" evidence=ISS] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISS]
            [GO:0008408 "3'-5' exonuclease activity" evidence=ISS]
            InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479
            PomBase:SPBC1347.07 Pfam:PF00929 GO:GO:0005829 GO:GO:0005739
            GO:GO:0005634 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003676
            InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006364
            HOGENOM:HOG000246596 eggNOG:COG1949 PIR:T39395 RefSeq:NP_596699.2
            STRING:O94626 GeneID:2539853 OrthoDB:EOG43R6X0 NextBio:20801000
            Uniprot:O94626
        Length = 252

 Score = 127 (49.8 bits), Expect = 6.1e-08, P = 6.1e-08
 Identities = 19/55 (34%), Positives = 37/55 (67%)

Query:    36 NEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMV 90
             +E+ L  MN+WC+E H  SGLT+R R S++++++ + +L  ++ KY+  K   ++
Sbjct:   123 DEKQLSEMNDWCIEQHGKSGLTERCRQSNLTVKDVENQLLAYIKKYIPKKREALI 177


>TIGR_CMR|SO_0592 [details] [associations]
            symbol:SO_0592 "oligoribonuclease" species:211586
            "Shewanella oneidensis MR-1" [GO:0000292 "RNA fragment catabolic
            process" evidence=ISS] [GO:0008946 "oligonucleotidase activity"
            evidence=ISS] HAMAP:MF_00045 InterPro:IPR006055 InterPro:IPR012337
            InterPro:IPR022894 SMART:SM00479 Pfam:PF00929 GO:GO:0005737
            GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004527
            GO:GO:0090305 InterPro:IPR013520 SUPFAM:SSF53098
            HOGENOM:HOG000246596 eggNOG:COG1949 KO:K13288 OMA:LEAFFHY
            ProtClustDB:PRK05359 RefSeq:NP_716225.1 ProteinModelPortal:Q8EJ78
            SMR:Q8EJ78 GeneID:1168461 KEGG:son:SO_0592 PATRIC:23520872
            Uniprot:Q8EJ78
        Length = 181

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 25/59 (42%), Positives = 38/59 (64%)

Query:    33 LYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
             ++ ++EVL  M++W  +HH  SGL +RVRAS V+  EA  +   F+A+YV    +PM G
Sbjct:    48 IHQSDEVLAAMDDWNQKHHGESGLIERVRASQVNEAEAVAQTIAFLAQYVPKGVSPMCG 106


>UNIPROTKB|E2QWT2 [details] [associations]
            symbol:REXO2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
            [GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] HAMAP:MF_00045
            InterPro:IPR006055 InterPro:IPR012337 InterPro:IPR022894
            SMART:SM00479 Pfam:PF00929 GO:GO:0003676 GO:GO:0005622
            GO:GO:0004527 InterPro:IPR013520 SUPFAM:SSF53098 OMA:LEAFFHY
            GeneTree:ENSGT00390000009255 EMBL:AAEX03003476 EMBL:AAEX03003474
            EMBL:AAEX03003475 Ensembl:ENSCAFT00000021436 Uniprot:E2QWT2
        Length = 236

 Score = 120 (47.3 bits), Expect = 3.1e-07, P = 3.1e-07
 Identities = 23/65 (35%), Positives = 38/65 (58%)

Query:    37 EEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGE-YHT 95
             +E+L +M++WC EHH  SGLT  V+ S+++ ++A+     FV +   P   P+ G   H 
Sbjct:    87 DELLDSMSDWCKEHHGKSGLTKAVKESTMT-QQAEYEFLSFVRQQTSPGLCPLAGNSVHA 145

Query:    96 SKELL 100
              K+ L
Sbjct:   146 DKKFL 150


>UNIPROTKB|Q4KJ81 [details] [associations]
            symbol:orn "Oligoribonuclease" species:220664 "Pseudomonas
            protegens Pf-5" [GO:0034611 "oligoribonucleotidase activity"
            evidence=ISS] HAMAP:MF_00045 InterPro:IPR006055 InterPro:IPR012337
            InterPro:IPR022894 SMART:SM00479 Pfam:PF00929 GO:GO:0005737
            GO:GO:0003676 EMBL:CP000076 GenomeReviews:CP000076_GR GO:GO:0004527
            InterPro:IPR013520 SUPFAM:SSF53098 HOGENOM:HOG000246596
            eggNOG:COG1949 KO:K13288 OMA:LEAFFHY ProtClustDB:PRK05359
            GO:GO:0034611 RefSeq:YP_257702.1 ProteinModelPortal:Q4KJ81
            SMR:Q4KJ81 STRING:Q4KJ81 GeneID:3481149 KEGG:pfl:PFL_0558
            PATRIC:19870273 BioCyc:PFLU220664:GIX8-559-MONOMER Uniprot:Q4KJ81
        Length = 180

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query:    33 LYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
             ++ ++E+L  M+EW    H  SGLT RVR S +S+ EA+ +   F+ ++V    +P+ G
Sbjct:    47 IHQSDEILAGMDEWNTRQHGGSGLTQRVRESRISMAEAEAQTIAFLEQWVPKGKSPICG 105


>CGD|CAL0004656 [details] [associations]
            symbol:REX2 species:5476 "Candida albicans" [GO:0000175
            "3'-5'-exoribonuclease activity" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000002
            "mitochondrial genome maintenance" evidence=IEA] [GO:0034476 "U5
            snRNA 3'-end processing" evidence=IEA] [GO:0000467 "exonucleolytic
            trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
            rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
            [GO:0034475 "U4 snRNA 3'-end processing" evidence=IEA]
            InterPro:IPR006055 InterPro:IPR012337 SMART:SM00479 CGD:CAL0004656
            Pfam:PF00929 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
            InterPro:IPR013520 SUPFAM:SSF53098 EMBL:AACQ01000008
            EMBL:AACQ01000007 eggNOG:COG1949 KO:K13288 RefSeq:XP_722377.1
            RefSeq:XP_722516.1 ProteinModelPortal:Q5ALW0 STRING:Q5ALW0
            GeneID:3635783 GeneID:3635981 KEGG:cal:CaO19.1466
            KEGG:cal:CaO19.9041 Uniprot:Q5ALW0
        Length = 255

 Score = 115 (45.5 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 27/81 (33%), Positives = 42/81 (51%)

Query:    33 LYYNEEVLQNMNEWCVEHHNASGLTDRVRAS-SVSIEEADKRLHQFVAKYV-KPKTAPMV 90
             +YY +  L  MNEWC+E H  SGLTD++ A+    +   +  L +++ KYV + +T  + 
Sbjct:    89 IYYPKSRLDKMNEWCIETHGKSGLTDKILANPDRKLSVVEDELLEYIKKYVPEVRTGLLA 148

Query:    91 GE------YHTSKELLKDSDH 105
             G       +   KE  K  DH
Sbjct:   149 GNSVYMDRFFMMKEFPKVIDH 169


>UNIPROTKB|Q9KV17 [details] [associations]
            symbol:orn "Oligoribonuclease" species:243277 "Vibrio
            cholerae O1 biovar El Tor str. N16961" [GO:0004532 "exoribonuclease
            activity" evidence=ISS] [GO:0006401 "RNA catabolic process"
            evidence=ISS] HAMAP:MF_00045 InterPro:IPR006055 InterPro:IPR012337
            InterPro:IPR022894 SMART:SM00479 Pfam:PF00929 GO:GO:0005737
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0006401
            InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0004532 eggNOG:COG1949
            KO:K13288 OMA:LEAFFHY ProtClustDB:PRK05359 PIR:E82333
            RefSeq:NP_229995.1 ProteinModelPortal:Q9KV17 SMR:Q9KV17
            DNASU:2615077 GeneID:2615077 KEGG:vch:VC0341 PATRIC:20079739
            Uniprot:Q9KV17
        Length = 181

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query:    33 LYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
             ++  E  L  M+EWC   H ASGL  RVR S VS EEA  +   F+ ++V    +P+ G
Sbjct:    48 IHQPESELAKMDEWCTTTHTASGLVARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICG 106


>TIGR_CMR|VC_0341 [details] [associations]
            symbol:VC_0341 "oligoribonuclease" species:686 "Vibrio
            cholerae O1 biovar El Tor" [GO:0004532 "exoribonuclease activity"
            evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
            HAMAP:MF_00045 InterPro:IPR006055 InterPro:IPR012337
            InterPro:IPR022894 SMART:SM00479 Pfam:PF00929 GO:GO:0005737
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0006401
            InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0004532 eggNOG:COG1949
            KO:K13288 OMA:LEAFFHY ProtClustDB:PRK05359 PIR:E82333
            RefSeq:NP_229995.1 ProteinModelPortal:Q9KV17 SMR:Q9KV17
            DNASU:2615077 GeneID:2615077 KEGG:vch:VC0341 PATRIC:20079739
            Uniprot:Q9KV17
        Length = 181

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query:    33 LYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
             ++  E  L  M+EWC   H ASGL  RVR S VS EEA  +   F+ ++V    +P+ G
Sbjct:    48 IHQPESELAKMDEWCTTTHTASGLVARVRQSQVSEEEAIDQTLAFLKQWVPEGKSPICG 106


>TAIR|locus:2059263 [details] [associations]
            symbol:AT2G26970 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
            "exonuclease activity" evidence=IEA;ISS] [GO:0005622
            "intracellular" evidence=IEA;ISS] InterPro:IPR006055
            InterPro:IPR012337 SMART:SM00479 Pfam:PF00929 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
            GO:GO:0090305 InterPro:IPR013520 SUPFAM:SSF53098 EMBL:AC005623
            HOGENOM:HOG000246596 EMBL:AY064031 EMBL:BT001963 IPI:IPI00519246
            PIR:B84667 RefSeq:NP_850090.1 UniGene:At.27095
            ProteinModelPortal:Q9ZVE0 SMR:Q9ZVE0 STRING:Q9ZVE0 PaxDb:Q9ZVE0
            PRIDE:Q9ZVE0 EnsemblPlants:AT2G26970.1 GeneID:817238
            KEGG:ath:AT2G26970 TAIR:At2g26970 eggNOG:COG1949 InParanoid:Q9ZVE0
            KO:K13288 OMA:LEAFFHY PhylomeDB:Q9ZVE0 ProtClustDB:CLSN2690937
            Genevestigator:Q9ZVE0 Uniprot:Q9ZVE0
        Length = 222

 Score = 112 (44.5 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 19/46 (41%), Positives = 33/46 (71%)

Query:    37 EEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYV 82
             ++ L  M++WC  HH ASGLT +V  S+++  EA++++ +FV K+V
Sbjct:    90 KDCLDKMDDWCQTHHGASGLTKKVLLSAITEREAEQKVIEFVKKHV 135


>TIGR_CMR|CBU_1235 [details] [associations]
            symbol:CBU_1235 "oligoribonuclease" species:227377
            "Coxiella burnetii RSA 493" [GO:0008946 "oligonucleotidase
            activity" evidence=ISS] HAMAP:MF_00045 InterPro:IPR006055
            InterPro:IPR012337 InterPro:IPR022894 SMART:SM00479 Pfam:PF00929
            GO:GO:0005737 GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
            GO:GO:0004527 GO:GO:0090305 InterPro:IPR013520 SUPFAM:SSF53098
            HOGENOM:HOG000246596 eggNOG:COG1949 KO:K13288 OMA:LEAFFHY
            ProtClustDB:PRK05359 RefSeq:NP_820230.1 PDB:3TR8 PDBsum:3TR8
            ProteinModelPortal:Q83C93 SMR:Q83C93 GeneID:1209140
            KEGG:cbu:CBU_1235 PATRIC:17931205
            BioCyc:CBUR227377:GJ7S-1222-MONOMER Uniprot:Q83C93
        Length = 183

 Score = 107 (42.7 bits), Expect = 3.8e-06, P = 3.8e-06
 Identities = 22/59 (37%), Positives = 34/59 (57%)

Query:    33 LYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
             ++  +++L  M+ W   HH ASGL +RV+ SSV   EA+     F+ KYV    +P+ G
Sbjct:    48 IHQPDKLLTAMDNWNTSHHTASGLLERVKNSSVDEVEAETLTLAFLEKYVSAGKSPLCG 106


>UNIPROTKB|P0A784 [details] [associations]
            symbol:orn "oligoribonuclease monomer" species:83333
            "Escherichia coli K-12" [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0090305 "nucleic acid
            phosphodiester bond hydrolysis" evidence=IEA] [GO:0034611
            "oligoribonucleotidase activity" evidence=IDA] [GO:0000175
            "3'-5'-exoribonuclease activity" evidence=IDA] [GO:0008310
            "single-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006401
            "RNA catabolic process" evidence=IMP] HAMAP:MF_00045
            InterPro:IPR006055 InterPro:IPR012337 InterPro:IPR022894
            SMART:SM00479 Pfam:PF00929 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
            GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046872
            GO:GO:0003676 GO:GO:0006401 EMBL:U14003 InterPro:IPR013520
            SUPFAM:SSF53098 GO:GO:0000175 GO:GO:0008310 HOGENOM:HOG000246596
            eggNOG:COG1949 KO:K13288 OMA:LEAFFHY ProtClustDB:PRK05359
            PIR:S56390 RefSeq:NP_418586.4 RefSeq:YP_492307.1 PDB:1YTA PDB:2IGI
            PDBsum:1YTA PDBsum:2IGI ProteinModelPortal:P0A784 SMR:P0A784
            PRIDE:P0A784 EnsemblBacteria:EBESCT00000002902
            EnsemblBacteria:EBESCT00000014870 GeneID:12932085 GeneID:948675
            KEGG:ecj:Y75_p4051 KEGG:eco:b4162 PATRIC:32123897 EchoBASE:EB2373
            EcoGene:EG12480 BioCyc:EcoCyc:G7842-MONOMER
            BioCyc:ECOL316407:JW5740-MONOMER BioCyc:MetaCyc:G7842-MONOMER
            EvolutionaryTrace:P0A784 Genevestigator:P0A784 GO:GO:0034611
            Uniprot:P0A784
        Length = 181

 Score = 100 (40.3 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 20/59 (33%), Positives = 37/59 (62%)

Query:    33 LYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVG 91
             ++ ++E L  M++W V  H ASGL +RV+AS++   EA+    +F+ ++V    +P+ G
Sbjct:    48 VHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICG 106


>UNIPROTKB|P65597 [details] [associations]
            symbol:orn "Oligoribonuclease" species:1773 "Mycobacterium
            tuberculosis" [GO:0040007 "growth" evidence=IMP] HAMAP:MF_00045
            InterPro:IPR006055 InterPro:IPR012337 InterPro:IPR022894
            SMART:SM00479 Pfam:PF00929 GO:GO:0005737 GO:GO:0040007
            EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
            EMBL:BX842580 GO:GO:0003676 GO:GO:0004527 GO:GO:0090305
            InterPro:IPR013520 SUPFAM:SSF53098 HOGENOM:HOG000246596
            eggNOG:COG1949 KO:K13288 OMA:LEAFFHY ProtClustDB:PRK05359
            PIR:G70551 RefSeq:NP_217027.1 RefSeq:NP_337076.1
            RefSeq:YP_006515950.1 ProteinModelPortal:P65597 SMR:P65597
            PRIDE:P65597 EnsemblBacteria:EBMYCT00000003866
            EnsemblBacteria:EBMYCT00000069519 GeneID:13319226 GeneID:888633
            GeneID:925738 KEGG:mtc:MT2586 KEGG:mtu:Rv2511 KEGG:mtv:RVBD_2511
            PATRIC:18127440 TubercuList:Rv2511 Uniprot:P65597
        Length = 215

 Score = 102 (41.0 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 21/60 (35%), Positives = 37/60 (61%)

Query:    33 LYYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVK-PKTAPMVG 91
             ++ ++  L  M +   E H+ SGL D V+AS+V +  A+  +  ++ ++VK PKTAP+ G
Sbjct:    45 MHADDAALSGMIDVVAEMHSRSGLIDEVKASTVDLATAEAMVLDYINEHVKQPKTAPLAG 104


>UNIPROTKB|F8VU14 [details] [associations]
            symbol:MBD6 "Methyl-CpG-binding domain protein 6"
            species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001739
            PROSITE:PS50982 GO:GO:0005634 GO:GO:0003677 EMBL:AC022506
            HGNC:HGNC:20445 ChiTaRS:MBD6 IPI:IPI01021336
            ProteinModelPortal:F8VU14 SMR:F8VU14 Ensembl:ENST00000548887
            ArrayExpress:F8VU14 Bgee:F8VU14 Uniprot:F8VU14
        Length = 148

 Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query:     8 PSNTALSSMEQVKAYLQTQGTCKCGL 33
             PS T LSS+EQ ++YL + GTCKCGL
Sbjct:    39 PSGTELSSLEQTRSYLLSDGTCKCGL 64


>UNIPROTKB|F8VVK7 [details] [associations]
            symbol:MBD6 "Methyl-CpG-binding domain protein 6"
            species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001739
            PROSITE:PS50982 GO:GO:0005634 GO:GO:0003677 EMBL:AC022506
            HGNC:HGNC:20445 ChiTaRS:MBD6 IPI:IPI00910653
            Ensembl:ENST00000546805 ArrayExpress:F8VVK7 Bgee:F8VVK7
            Uniprot:F8VVK7
        Length = 73

 Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query:     8 PSNTALSSMEQVKAYLQTQGTCKCGL 33
             PS T LSS+EQ ++YL + GTCKCGL
Sbjct:    39 PSGTELSSLEQTRSYLLSDGTCKCGL 64


>UNIPROTKB|H0YHD1 [details] [associations]
            symbol:MBD6 "Methyl-CpG-binding domain protein 6"
            species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001739
            PROSITE:PS50982 GO:GO:0005634 GO:GO:0003677 EMBL:AC022506
            HGNC:HGNC:20445 ChiTaRS:MBD6 Ensembl:ENST00000552659 Bgee:H0YHD1
            Uniprot:H0YHD1
        Length = 177

 Score = 96 (38.9 bits), Expect = 6.8e-05, P = 6.8e-05
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query:     8 PSNTALSSMEQVKAYLQTQGTCKCGL 33
             PS T LSS+EQ ++YL + GTCKCGL
Sbjct:    34 PSGTELSSLEQTRSYLLSDGTCKCGL 59


>UNIPROTKB|Q9P267 [details] [associations]
            symbol:MBD5 "Methyl-CpG-binding domain protein 5"
            species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005694 "chromosome" evidence=IEA] [GO:0003682 "chromatin
            binding" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
            InterPro:IPR001739 PROSITE:PS50982 GO:GO:0005634 GO:GO:0005694
            GO:GO:0003682 EMBL:CH471058 InterPro:IPR000313 PROSITE:PS50812
            Orphanet:178469 EMBL:EF542797 EMBL:AB040894 EMBL:AC016731
            EMBL:BC014534 EMBL:BC150264 EMBL:AK001975 IPI:IPI00428403
            IPI:IPI00783294 RefSeq:NP_060798.2 UniGene:Hs.458312
            ProteinModelPortal:Q9P267 SMR:Q9P267 IntAct:Q9P267 STRING:Q9P267
            PhosphoSite:Q9P267 DMDM:296439306 PaxDb:Q9P267 PRIDE:Q9P267
            Ensembl:ENST00000407073 GeneID:55777 KEGG:hsa:55777 UCSC:uc002twm.4
            CTD:55777 GeneCards:GC02P148778 H-InvDB:HIX0002494 HGNC:HGNC:20444
            HPA:HPA035965 MIM:156200 MIM:611472 neXtProt:NX_Q9P267
            Orphanet:228402 PharmGKB:PA134924244 eggNOG:NOG27778
            HOGENOM:HOG000049255 HOVERGEN:HBG052419 OrthoDB:EOG4GHZN9
            ChiTaRS:MBD5 GenomeRNAi:55777 NextBio:60851 ArrayExpress:Q9P267
            Bgee:Q9P267 CleanEx:HS_MBD5 Genevestigator:Q9P267
            GermOnline:ENSG00000204406 Uniprot:Q9P267
        Length = 1494

 Score = 97 (39.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 18/26 (69%), Positives = 20/26 (76%)

Query:     8 PSNTALSSMEQVKAYLQTQGTCKCGL 33
             PS + LS +EQVK YL T GTCKCGL
Sbjct:    39 PSGSLLSCLEQVKTYLLTDGTCKCGL 64

 Score = 36 (17.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 6/16 (37%), Positives = 13/16 (81%)

Query:    48 VEHHNASGLTDRVRAS 63
             V +H+ +GL ++++AS
Sbjct:   775 VPNHHLAGLINQIQAS 790


>UNIPROTKB|E1BPU6 [details] [associations]
            symbol:MBD5 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003682 "chromatin binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR001739 PROSITE:PS50982 GO:GO:0005634 GO:GO:0003677
            GO:GO:0003682 InterPro:IPR000313 PROSITE:PS50812 CTD:55777
            GeneTree:ENSGT00530000064137 OMA:PGCGASN EMBL:DAAA02004663
            IPI:IPI00924019 RefSeq:NP_001178197.1 UniGene:Bt.44103 PRIDE:E1BPU6
            Ensembl:ENSBTAT00000061479 GeneID:541084 KEGG:bta:541084
            NextBio:20878999 Uniprot:E1BPU6
        Length = 1498

 Score = 97 (39.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 18/26 (69%), Positives = 20/26 (76%)

Query:     8 PSNTALSSMEQVKAYLQTQGTCKCGL 33
             PS + LS +EQVK YL T GTCKCGL
Sbjct:    39 PSGSLLSCLEQVKTYLLTDGTCKCGL 64

 Score = 36 (17.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 6/16 (37%), Positives = 13/16 (81%)

Query:    48 VEHHNASGLTDRVRAS 63
             V +H+ +GL ++++AS
Sbjct:   779 VPNHHLTGLINQIQAS 794


>UNIPROTKB|F1PJZ2 [details] [associations]
            symbol:MBD5 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677
            "DNA binding" evidence=IEA] InterPro:IPR001739 PROSITE:PS50982
            GO:GO:0005634 GO:GO:0003677 InterPro:IPR000313 PROSITE:PS50812
            CTD:55777 GeneTree:ENSGT00530000064137 OMA:PGCGASN
            EMBL:AAEX03011948 EMBL:AAEX03011949 RefSeq:XP_541030.2
            Ensembl:ENSCAFT00000008917 GeneID:483910 KEGG:cfa:483910
            Uniprot:F1PJZ2
        Length = 1500

 Score = 97 (39.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 18/26 (69%), Positives = 20/26 (76%)

Query:     8 PSNTALSSMEQVKAYLQTQGTCKCGL 33
             PS + LS +EQVK YL T GTCKCGL
Sbjct:    39 PSGSLLSCLEQVKTYLLTDGTCKCGL 64

 Score = 36 (17.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 6/16 (37%), Positives = 13/16 (81%)

Query:    48 VEHHNASGLTDRVRAS 63
             V +H+ +GL ++++AS
Sbjct:   780 VPNHHLAGLINQIQAS 795


>UNIPROTKB|E9PHH0 [details] [associations]
            symbol:MBD5 "Methyl-CpG-binding domain protein 5"
            species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001739
            PROSITE:PS50982 GO:GO:0005634 GO:GO:0003677 InterPro:IPR000313
            PROSITE:PS50812 EMBL:AC016731 HGNC:HGNC:20444 ChiTaRS:MBD5
            EMBL:AC019226 EMBL:AC018465 EMBL:AC019070 EMBL:AC079391
            EMBL:AC092605 IPI:IPI00879134 ProteinModelPortal:E9PHH0
            PRIDE:E9PHH0 Ensembl:ENST00000404807 OMA:PGCGASN
            ArrayExpress:E9PHH0 Bgee:E9PHH0 Uniprot:E9PHH0
        Length = 1727

 Score = 97 (39.2 bits), Expect = 0.00017, Sum P(2) = 0.00017
 Identities = 18/26 (69%), Positives = 20/26 (76%)

Query:     8 PSNTALSSMEQVKAYLQTQGTCKCGL 33
             PS + LS +EQVK YL T GTCKCGL
Sbjct:    39 PSGSLLSCLEQVKTYLLTDGTCKCGL 64

 Score = 36 (17.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
 Identities = 6/16 (37%), Positives = 13/16 (81%)

Query:    48 VEHHNASGLTDRVRAS 63
             V +H+ +GL ++++AS
Sbjct:   775 VPNHHLAGLINQIQAS 790


>UNIPROTKB|I3LDD3 [details] [associations]
            symbol:I3LDD3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR001739 PROSITE:PS50982
            GO:GO:0005634 GO:GO:0003677 GeneTree:ENSGT00530000064137
            Ensembl:ENSSSCT00000031526 Uniprot:I3LDD3
        Length = 269

 Score = 96 (38.9 bits), Expect = 0.00021, P = 0.00021
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query:     8 PSNTALSSMEQVKAYLQTQGTCKCGL 33
             PS T LSS+EQ ++YL + GTCKCGL
Sbjct:    39 PSGTELSSLEQTRSYLLSDGTCKCGL 64


>MGI|MGI:2138934 [details] [associations]
            symbol:Mbd5 "methyl-CpG binding domain protein 5"
            species:10090 "Mus musculus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=ISO]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR001739
            PROSITE:PS50982 MGI:MGI:2138934 GO:GO:0005634 GO:GO:0005694
            GO:GO:0003682 PROSITE:PS50812 eggNOG:NOG27778 HOGENOM:HOG000049255
            HOVERGEN:HBG052419 ChiTaRS:MBD5 EMBL:BX546465 EMBL:AL845298
            EMBL:BC138375 EMBL:BC138378 IPI:IPI00755508 UniGene:Mm.440436
            ProteinModelPortal:B1AYB6 SMR:B1AYB6 PRIDE:B1AYB6
            Ensembl:ENSMUST00000112754 UCSC:uc012bve.1
            GeneTree:ENSGT00530000064137 Bgee:B1AYB6 Genevestigator:B1AYB6
            Uniprot:B1AYB6
        Length = 1498

 Score = 94 (38.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
 Identities = 17/26 (65%), Positives = 20/26 (76%)

Query:     8 PSNTALSSMEQVKAYLQTQGTCKCGL 33
             PS + LS ++QVK YL T GTCKCGL
Sbjct:    39 PSGSLLSCLDQVKTYLLTDGTCKCGL 64

 Score = 36 (17.7 bits), Expect = 0.00026, Sum P(2) = 0.00026
 Identities = 6/16 (37%), Positives = 13/16 (81%)

Query:    48 VEHHNASGLTDRVRAS 63
             V +H+ +GL ++++AS
Sbjct:   780 VPNHHLAGLINQIQAS 795


>UNIPROTKB|E9PTY4 [details] [associations]
            symbol:E9PTY4 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001739
            PROSITE:PS50982 GO:GO:0005634 GO:GO:0003677 IPI:IPI00951000
            Ensembl:ENSRNOT00000065716 ArrayExpress:E9PTY4 Uniprot:E9PTY4
        Length = 1505

 Score = 94 (38.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
 Identities = 17/26 (65%), Positives = 20/26 (76%)

Query:     8 PSNTALSSMEQVKAYLQTQGTCKCGL 33
             PS + LS ++QVK YL T GTCKCGL
Sbjct:    39 PSGSLLSCLDQVKTYLLTDGTCKCGL 64

 Score = 36 (17.7 bits), Expect = 0.00026, Sum P(2) = 0.00026
 Identities = 6/16 (37%), Positives = 13/16 (81%)

Query:    48 VEHHNASGLTDRVRAS 63
             V +H+ +GL ++++AS
Sbjct:   780 VPNHHLAGLINQIQAS 795


>UNIPROTKB|E9PTQ5 [details] [associations]
            symbol:E9PTQ5 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] InterPro:IPR001739 PROSITE:PS50982 GO:GO:0005634
            GO:GO:0003677 GO:GO:0003682 GeneTree:ENSGT00530000064137
            IPI:IPI00372068 Ensembl:ENSRNOT00000034632 ArrayExpress:E9PTQ5
            Uniprot:E9PTQ5
        Length = 1733

 Score = 94 (38.1 bits), Expect = 0.00035, Sum P(2) = 0.00035
 Identities = 17/26 (65%), Positives = 20/26 (76%)

Query:     8 PSNTALSSMEQVKAYLQTQGTCKCGL 33
             PS + LS ++QVK YL T GTCKCGL
Sbjct:    39 PSGSLLSCLDQVKTYLLTDGTCKCGL 64

 Score = 36 (17.7 bits), Expect = 0.00035, Sum P(2) = 0.00035
 Identities = 6/16 (37%), Positives = 13/16 (81%)

Query:    48 VEHHNASGLTDRVRAS 63
             V +H+ +GL ++++AS
Sbjct:   780 VPNHHLAGLINQIQAS 795


>ZFIN|ZDB-GENE-070209-125 [details] [associations]
            symbol:zgc:158479 "zgc:158479" species:7955 "Danio
            rerio" [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR001739 PROSITE:PS50982
            ZFIN:ZDB-GENE-070209-125 GO:GO:0005634 GO:GO:0003677
            eggNOG:NOG27778 HOVERGEN:HBG052419 OrthoDB:EOG4GHZN9
            GeneTree:ENSGT00530000064137 EMBL:CABZ01085587 EMBL:CABZ01085588
            EMBL:CABZ01085589 EMBL:BC128886 IPI:IPI00806602 UniGene:Dr.88841
            Ensembl:ENSDART00000082954 HOGENOM:HOG000237313 InParanoid:A2VCY3
            NextBio:20787810 Uniprot:A2VCY3
        Length = 792

 Score = 99 (39.9 bits), Expect = 0.00047, P = 0.00047
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query:     8 PSNTALSSMEQVKAYLQTQGTCKCGL 33
             PS + LS +EQVK+YL T GTCKCGL
Sbjct:    32 PSGSVLSCLEQVKSYLLTDGTCKCGL 57


>FB|FBgn0016754 [details] [associations]
            symbol:sba "six-banded" species:7227 "Drosophila
            melanogaster" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR001739 PROSITE:PS50982
            SMART:SM00391 Pfam:PF00855 EMBL:AE014297 GO:GO:0005634
            GO:GO:0003677 InterPro:IPR000313 PROSITE:PS50812 eggNOG:NOG27778
            GeneTree:ENSGT00530000064137 RefSeq:NP_001097893.1
            RefSeq:NP_788726.2 UniGene:Dm.2202 ProteinModelPortal:A8JR92
            SMR:A8JR92 STRING:A8JR92 EnsemblMetazoa:FBtr0112889
            EnsemblMetazoa:FBtr0308562 GeneID:42824 KEGG:dme:Dmel_CG13598
            UCSC:CG13598-RD CTD:42824 FlyBase:FBgn0016754 OMA:CERSICK
            PhylomeDB:A8JR92 GenomeRNAi:42824 NextBio:830753 Bgee:A8JR92
            Uniprot:A8JR92
        Length = 1583

 Score = 85 (35.0 bits), Expect = 0.00076, Sum P(2) = 0.00076
 Identities = 16/26 (61%), Positives = 18/26 (69%)

Query:     8 PSNTALSSMEQVKAYLQTQGTCKCGL 33
             PS   L +  Q+K YL TQGTCKCGL
Sbjct:   266 PSGKTLRTQFQIKDYLLTQGTCKCGL 291

 Score = 41 (19.5 bits), Expect = 0.00076, Sum P(2) = 0.00076
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query:    40 LQNMNEWCVEHHNASGLTDRVRASSVSIEEA 70
             LQ+++E    HH A   T + R  +  +E A
Sbjct:  1402 LQSLSEGLEAHHKAQKDTRKSRKLNSQLERA 1432


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.128   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      111       111   0.00091  102 3  11 23  0.48    30
                                                     29  0.42    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  39
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  133 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.47u 0.07s 13.54t   Elapsed:  00:00:05
  Total cpu time:  13.48u 0.07s 13.55t   Elapsed:  00:00:05
  Start:  Thu Aug 15 14:43:50 2013   End:  Thu Aug 15 14:43:55 2013

Back to top