RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13232
(111 letters)
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella
burnetii}
Length = 186
Score = 46.8 bits (110), Expect = 1e-07
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 34 YYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGEY 93
+ +++L M+ W HH ASGL +RV+ SSV EA+ F+ KYV +P+ G
Sbjct: 52 HQPDKLLTAMDNWNTSHHTASGLLERVKNSSVDEVEAETLTLAFLEKYVSAGKSPLCGNS 111
Query: 94 H 94
Sbjct: 112 V 112
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase,
mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB:
1yta_A 1j9a_A
Length = 180
Score = 44.1 bits (103), Expect = 1e-06
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 37 EEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGEY 93
+E L M++W V H ASGL +RV+AS++ EA+ +F+ ++V +P+ G
Sbjct: 51 DEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNS 107
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase;
2.30A {Xanthomonas campestris PV}
Length = 194
Score = 42.9 bits (100), Expect = 3e-06
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 34 YYNEEVLQNMNEWCVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKYVKPKTAPMVGEY 93
++ E L+ M+EW H SGL RV S V+ +A+ + F+ ++++ +PM G
Sbjct: 52 AHSLETLEAMDEWNRNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLGEWIRAGASPMCGNS 111
Query: 94 H 94
Sbjct: 112 I 112
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.18
Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 68 EEADKRLHQFVAKYVKPKTAP 88
++A K+L + Y +AP
Sbjct: 19 KQALKKLQASLKLYA-DDSAP 38
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET:
TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A*
2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Length = 543
Score = 29.2 bits (66), Expect = 0.22
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 68 EEADKRLHQF------VAKYVKPKTAPMVGEYHTSK 97
EA +R+ + VA++ KP TAP E T+
Sbjct: 248 TEALRRMEESLKDEIWVARFEKPNTAPNSLEPSTTV 283
>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster
binding fold with CXCX16CXCX8CXC binding MOTI electron
transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB:
2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A
Length = 117
Score = 27.3 bits (60), Expect = 0.66
Identities = 3/19 (15%), Positives = 8/19 (42%)
Query: 21 AYLQTQGTCKCGLYYNEEV 39
++ + C C L+ +
Sbjct: 77 VPMRERKECHCMLFLTPDN 95
>2cwz_A Thioesterase family protein; structural genomics, NPPSFA,
national project protein structural and functional
analyses; 1.85A {Thermus thermophilus} SCOP: d.38.1.7
Length = 141
Score = 27.1 bits (60), Expect = 1.0
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 48 VEHHNASGLTDRVRASSVSIEEADKRLH 75
H ++ RVR + + R++
Sbjct: 68 ARHLASALPGMRVRVVARHEKTEGNRVY 95
>2zf8_A MOTY, component of sodium-driven polar flagellar motor; beta
barrel, 2-layer sandwich, flagellum, structural protein;
2.85A {Vibrio alginolyticus}
Length = 278
Score = 26.4 bits (58), Expect = 1.8
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 2 DNIGNRPSNTALSSM--EQVKAYLQTQG 27
D+ + ++ +LS E ++ Y Q+ G
Sbjct: 204 DSTDGKSASQSLSERRAESLRDYFQSLG 231
>3kuv_A Fluoroacetyl coenzyme A thioesterase; fluoroacetyl-COA thioesterase
FLK, hot DOG folding, thioeste hydrolase; 1.50A
{Streptomyces cattleya} PDB: 3kuw_A 3kvu_A* 3p2q_A
3p2r_A 3p2s_A 3kv7_A 3kv8_A 3kvz_A* 3kw1_A* 3kx7_A
3kx8_A 3kvi_A 3p3i_A 3p3f_A
Length = 139
Score = 26.0 bits (57), Expect = 2.1
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 48 VEHHNASGLTDRVRASSVSIEEADKRLH 75
V H A+ V ++ +RL
Sbjct: 74 VTHTAATPPGLTVTVTAELRSVEGRRLS 101
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 26.0 bits (58), Expect = 2.5
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 6/39 (15%)
Query: 72 KRLHQFVAK------YVKPKTAPMVGEYHTSKELLKDSD 104
+ + F AK + P+ + +L K +D
Sbjct: 163 QIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQAD 201
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism,
pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A
{Trypanosoma cruzi} SCOP: c.67.1.1
Length = 416
Score = 26.0 bits (58), Expect = 3.3
Identities = 3/21 (14%), Positives = 10/21 (47%)
Query: 31 CGLYYNEEVLQNMNEWCVEHH 51
CG ++ + ++++ E
Sbjct: 190 CGSNFSRKHVEDIVRLAEELR 210
>3qoo_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, hot-DOG superfamily;
1.25A {Thermanaerovibrio acidaminovorans}
Length = 138
Score = 25.5 bits (56), Expect = 3.5
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 48 VEHHNASGLTDRVRASSVSIEEADKRLH 75
V + + L D V + R+
Sbjct: 73 VHNLAPAVLGDDVTFTVTVDRVEGNRVV 100
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics,
structural genomics consortium, disease mutation,
phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens}
PDB: 3pdx_A*
Length = 427
Score = 25.7 bits (57), Expect = 4.3
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 31 CGLYYNEEVLQNMNEWCVEHH 51
CG +++ LQ +
Sbjct: 204 CGSVFSKRHLQKILAVAARQC 224
>2q78_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, hydrolase; HET: MSE MLC; 2.20A {Thermotoga
maritima MSB8} SCOP: d.38.1.7
Length = 153
Score = 24.8 bits (54), Expect = 5.9
Identities = 5/28 (17%), Positives = 7/28 (25%)
Query: 48 VEHHNASGLTDRVRASSVSIEEADKRLH 75
H A RV + R+
Sbjct: 82 ARHVKAVPTGTRVAVGVRVVGVVGNRVK 109
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 24.7 bits (53), Expect = 7.6
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 14/72 (19%)
Query: 41 QNMNEWCVEHHNASGLTDRVRASSVS----IEEADKRLHQFVAKY----VKPKTAPMVGE 92
+++ +W E L + AS V E+A K L ++ + K K + +
Sbjct: 85 ESIRKWREE--QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
Query: 93 YHTSKELLKDSD 104
K + D
Sbjct: 143 ----KAFYQQPD 150
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI
structure initiative, joint center for structural
genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 409
Score = 24.8 bits (55), Expect = 7.9
Identities = 2/26 (7%), Positives = 8/26 (30%)
Query: 62 ASSVSIEEADKRLHQFVAKYVKPKTA 87
+ A L + + + + +
Sbjct: 383 LEKDLLSRAIDVLMEGLKMFCSSRIS 408
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.128 0.384
Gapped
Lambda K H
0.267 0.0466 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,594,646
Number of extensions: 78417
Number of successful extensions: 235
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 21
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.1 bits)