RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13232
         (111 letters)



>d2q78a1 d.38.1.7 (A:1-130) Uncharacterized protein TM0581
           {Thermotoga maritima [TaxId: 2336]}
          Length = 130

 Score = 25.9 bits (57), Expect = 0.76
 Identities = 5/35 (14%), Positives = 7/35 (20%)

Query: 47  CVEHHNASGLTDRVRASSVSIEEADKRLHQFVAKY 81
              H  A     RV      +     R+       
Sbjct: 69  LARHVKAVPTGTRVAVGVRVVGVVGNRVKFRGIVM 103


>d2ieca1 d.316.1.1 (A:11-123) Hypothetical protein MK0786
          {Methanopyrus kandleri [TaxId: 2320]}
          Length = 113

 Score = 25.4 bits (56), Expect = 1.1
 Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 8/39 (20%)

Query: 56 LTDRVRASSVSIEEADKRL----HQFVAKYVKPKTAPMV 90
          L+DR RA    I EA   L    HQF    V P TA  V
Sbjct: 1  LSDRERA----IFEAGITLGAIYHQFCGTPVSPGTAEEV 35


>d2pu9a1 g.36.1.1 (A:8-115) Ferredoxin thioredoxin reductase
          (FTR), catalytic beta chain {Synechocystis sp. [TaxId:
          1143]}
          Length = 108

 Score = 24.8 bits (54), Expect = 1.7
 Identities = 3/17 (17%), Positives = 8/17 (47%)

Query: 22 YLQTQGTCKCGLYYNEE 38
           ++ +  C C L+   +
Sbjct: 71 PMRERKECHCMLFLTPD 87


>d2i52a1 d.316.1.1 (A:1-120) Hypothetical protein PTO0218
          {Picrophilus torridus [TaxId: 82076]}
          Length = 120

 Score = 24.7 bits (54), Expect = 1.8
 Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 8/41 (19%)

Query: 56 LTDRVRASSVSIEEADKRL----HQFVAKYVKPKTAPMVGE 92
           TD  RA      EA  +L    HQ+    V  + A M  E
Sbjct: 11 CTDIQRA----FFEAGIKLGAIFHQYTGIPVNSENASMAEE 47


>d1w27a_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Parsley
           (Petroselinum crispum), PAL1 [TaxId: 4043]}
          Length = 692

 Score = 24.1 bits (52), Expect = 4.8
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 61  RASSVSIEEADKRLHQFVAKYVKP--KTAPMVGEYHTSKELLKDSDHFLVFSW 111
           R    +++   K     VAK V        +       K+LL+  D   +F++
Sbjct: 502 RHLEENLKSTVKNTVSSVAKRVLTMGVNGELHPSRFCEKDLLRVVDREYIFAY 554


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.128    0.384 

Gapped
Lambda     K      H
   0.267   0.0638    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 383,944
Number of extensions: 14780
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 8
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)