Query psy13233
Match_columns 704
No_of_seqs 358 out of 2161
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 23:31:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13233.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13233hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0020|consensus 100.0 3E-154 7E-159 1232.7 33.4 634 16-665 26-742 (785)
2 PTZ00130 heat shock protein 90 100.0 2E-126 5E-131 1094.3 44.5 581 61-664 64-753 (814)
3 PTZ00272 heat shock protein 83 100.0 5E-126 1E-130 1090.0 46.5 580 63-664 3-665 (701)
4 KOG0019|consensus 100.0 4E-125 8E-130 1035.8 31.1 532 60-668 32-646 (656)
5 COG0326 HtpG Molecular chapero 100.0 2E-121 5E-126 1023.5 43.5 533 61-665 3-620 (623)
6 PRK05218 heat shock protein 90 100.0 4E-100 8E-105 873.3 42.0 527 62-664 3-609 (613)
7 PRK14083 HSP90 family protein; 100.0 3E-89 6.4E-94 778.4 39.9 497 64-664 2-590 (601)
8 PF00183 HSP90: Hsp90 protein; 100.0 4.5E-85 9.7E-90 736.3 20.2 410 246-666 1-494 (531)
9 KOG0020|consensus 100.0 1.2E-34 2.6E-39 312.4 10.7 142 561-702 404-547 (785)
10 PF00183 HSP90: Hsp90 protein; 100.0 2.8E-31 6E-36 300.3 7.3 140 562-701 159-301 (531)
11 KOG0019|consensus 100.0 9.4E-30 2E-34 282.0 14.9 211 429-703 240-454 (656)
12 PTZ00272 heat shock protein 83 100.0 2.1E-28 4.4E-33 283.2 13.1 142 561-702 331-475 (701)
13 PTZ00130 heat shock protein 90 99.9 5.3E-28 1.1E-32 280.5 12.6 142 561-702 391-564 (814)
14 COG0326 HtpG Molecular chapero 99.9 2.5E-27 5.3E-32 267.2 12.3 142 561-702 292-438 (623)
15 PRK05218 heat shock protein 90 99.9 1.2E-24 2.7E-29 250.6 11.9 141 561-701 284-427 (613)
16 PRK14083 HSP90 family protein; 99.9 2.3E-22 5E-27 230.6 11.3 133 562-700 265-401 (601)
17 PF13589 HATPase_c_3: Histidin 99.6 3.8E-16 8.2E-21 148.0 9.2 101 83-213 1-104 (137)
18 TIGR00585 mutl DNA mismatch re 99.3 6.6E-12 1.4E-16 134.5 13.3 161 80-271 17-192 (312)
19 COG1389 DNA topoisomerase VI, 99.2 7E-11 1.5E-15 129.5 9.0 133 88-244 39-184 (538)
20 PRK04184 DNA topoisomerase VI 99.0 1.6E-09 3.6E-14 123.3 12.7 152 87-264 38-203 (535)
21 PRK00095 mutL DNA mismatch rep 98.9 3.3E-09 7.1E-14 123.6 10.9 158 75-264 11-181 (617)
22 COG0323 MutL DNA mismatch repa 98.9 1.4E-09 3E-14 126.9 7.7 147 82-263 20-182 (638)
23 TIGR01052 top6b DNA topoisomer 98.9 1.3E-08 2.8E-13 115.0 12.2 175 58-270 13-201 (488)
24 PRK14868 DNA topoisomerase VI 98.7 4.3E-08 9.4E-13 114.5 10.0 147 88-262 49-207 (795)
25 PF02518 HATPase_c: Histidine 98.4 3.4E-07 7.4E-12 82.3 5.3 81 88-198 8-88 (111)
26 PRK05559 DNA topoisomerase IV 98.3 1.2E-06 2.6E-11 102.7 8.4 161 86-273 38-211 (631)
27 PRK14867 DNA topoisomerase VI 98.3 2.5E-06 5.4E-11 99.5 10.7 147 88-262 39-198 (659)
28 TIGR01055 parE_Gneg DNA topois 98.1 1.1E-05 2.3E-10 94.6 9.5 161 85-273 30-204 (625)
29 smart00433 TOP2c Topoisomerase 98.1 7.5E-06 1.6E-10 95.5 7.7 154 89-273 5-175 (594)
30 PRK14939 gyrB DNA gyrase subun 98.0 2.1E-05 4.5E-10 93.6 10.3 155 87-273 39-209 (756)
31 TIGR01059 gyrB DNA gyrase, B s 98.0 1.7E-05 3.7E-10 93.5 8.9 158 87-272 32-201 (654)
32 PRK05644 gyrB DNA gyrase subun 97.9 3.2E-05 6.8E-10 91.0 9.8 157 88-273 40-209 (638)
33 KOG1978|consensus 97.9 9.3E-06 2E-10 93.6 4.6 125 80-239 15-146 (672)
34 KOG1979|consensus 97.8 8.2E-05 1.8E-09 84.5 9.3 146 82-263 24-186 (694)
35 smart00387 HATPase_c Histidine 97.1 0.0013 2.8E-08 56.4 6.5 81 88-198 8-88 (111)
36 PRK10755 sensor protein BasS/P 97.1 0.00073 1.6E-08 72.5 5.8 101 88-242 250-350 (356)
37 cd00075 HATPase_c Histidine ki 97.0 0.0019 4E-08 54.5 6.9 85 88-202 3-91 (103)
38 TIGR01058 parE_Gpos DNA topois 96.9 0.0032 7E-08 74.3 9.7 158 88-273 37-207 (637)
39 TIGR02916 PEP_his_kin putative 96.9 0.0014 3E-08 77.5 6.2 96 89-240 583-678 (679)
40 PRK10604 sensor protein RstB; 96.9 0.0016 3.5E-08 72.5 6.4 101 88-241 322-422 (433)
41 PRK10549 signal transduction h 96.9 0.0015 3.3E-08 72.2 6.1 102 89-241 356-457 (466)
42 KOG1977|consensus 96.8 0.00044 9.6E-09 80.0 1.7 124 86-239 22-149 (1142)
43 TIGR01386 cztS_silS_copS heavy 96.8 0.0018 3.8E-08 71.0 6.0 100 89-240 357-456 (457)
44 PRK11006 phoR phosphate regulo 96.8 0.0018 3.9E-08 71.8 6.0 103 88-241 320-422 (430)
45 PRK09470 cpxA two-component se 96.8 0.0024 5.1E-08 70.4 6.7 48 89-152 357-404 (461)
46 TIGR02938 nifL_nitrog nitrogen 96.8 0.0029 6.2E-08 69.5 7.1 102 88-241 390-493 (494)
47 PRK11100 sensory histidine kin 96.6 0.0032 6.9E-08 69.3 6.5 102 88-241 371-472 (475)
48 TIGR02966 phoR_proteo phosphat 96.6 0.003 6.5E-08 65.5 5.4 50 89-152 233-282 (333)
49 PRK15347 two component system 96.4 0.0054 1.2E-07 74.1 7.0 50 88-152 516-565 (921)
50 PRK11086 sensory histidine kin 96.4 0.0065 1.4E-07 68.4 7.0 53 88-152 436-488 (542)
51 PRK11360 sensory histidine kin 96.3 0.0073 1.6E-07 67.9 6.7 49 89-151 504-553 (607)
52 PRK10815 sensor protein PhoQ; 96.3 0.0064 1.4E-07 69.3 6.3 98 89-243 382-479 (485)
53 PRK11466 hybrid sensory histid 96.3 0.0082 1.8E-07 72.8 7.4 49 89-152 565-613 (914)
54 PRK10364 sensor protein ZraS; 96.2 0.0089 1.9E-07 66.7 7.0 50 89-152 352-401 (457)
55 PRK15053 dpiB sensor histidine 96.2 0.0092 2E-07 67.9 7.0 104 89-242 436-539 (545)
56 TIGR02956 TMAO_torS TMAO reduc 96.2 0.0094 2E-07 72.6 7.5 50 88-152 582-632 (968)
57 COG0187 GyrB Type IIA topoisom 96.2 0.028 6E-07 65.5 10.5 160 86-273 37-210 (635)
58 PRK09303 adaptive-response sen 96.1 0.012 2.5E-07 64.8 7.2 78 88-196 275-353 (380)
59 PLN03237 DNA topoisomerase 2; 96.1 0.031 6.6E-07 70.8 11.3 160 87-273 79-259 (1465)
60 PHA02569 39 DNA topoisomerase 95.8 0.039 8.4E-07 65.0 9.9 157 88-273 48-223 (602)
61 PRK09467 envZ osmolarity senso 95.8 0.018 4E-07 63.2 6.7 33 120-152 350-382 (435)
62 PRK11091 aerobic respiration c 95.7 0.02 4.3E-07 68.6 7.3 50 88-152 401-451 (779)
63 PLN03128 DNA topoisomerase 2; 95.7 0.056 1.2E-06 67.6 11.0 162 88-273 55-234 (1135)
64 PRK13837 two-component VirA-li 95.6 0.019 4.2E-07 69.6 6.8 50 88-151 563-627 (828)
65 TIGR03785 marine_sort_HK prote 95.6 0.019 4.2E-07 68.6 6.5 51 88-152 600-650 (703)
66 PRK09835 sensor kinase CusS; P 95.5 0.02 4.3E-07 63.6 6.0 33 120-152 396-428 (482)
67 PRK11107 hybrid sensory histid 95.5 0.024 5.3E-07 68.5 6.8 86 89-204 412-506 (919)
68 PTZ00109 DNA gyrase subunit b; 95.4 0.035 7.7E-07 67.3 7.8 166 87-273 131-357 (903)
69 PTZ00108 DNA topoisomerase 2-l 95.4 0.08 1.7E-06 67.2 10.9 163 87-273 59-241 (1388)
70 PRK10337 sensor protein QseC; 95.3 0.033 7.2E-07 61.6 6.9 46 89-152 356-401 (449)
71 PRK10490 sensor protein KdpD; 95.3 0.027 6E-07 69.1 6.4 51 88-152 781-831 (895)
72 PRK10841 hybrid sensory kinase 95.2 0.032 7E-07 68.7 6.8 87 88-204 565-655 (924)
73 PRK10618 phosphotransfer inter 95.1 0.047 1E-06 67.1 7.6 50 88-152 568-620 (894)
74 COG4191 Signal transduction hi 94.1 0.05 1.1E-06 63.1 4.3 52 89-152 501-552 (603)
75 TIGR01925 spIIAB anti-sigma F 94.0 0.16 3.5E-06 47.4 7.0 46 88-144 42-87 (137)
76 PRK09959 hybrid sensory histid 93.9 0.11 2.3E-06 65.3 7.3 50 88-152 831-885 (1197)
77 PRK03660 anti-sigma F factor; 93.7 0.18 3.8E-06 47.6 6.7 48 87-145 41-88 (146)
78 PRK10547 chemotaxis protein Ch 93.7 0.2 4.4E-06 59.8 8.5 53 90-150 390-448 (670)
79 PRK13557 histidine kinase; Pro 93.6 0.13 2.7E-06 57.8 6.4 20 133-152 326-345 (540)
80 COG0642 BaeS Signal transducti 93.0 0.13 2.8E-06 52.2 4.9 48 88-150 231-278 (336)
81 COG3290 CitA Signal transducti 92.9 0.15 3.2E-06 58.8 5.6 59 88-158 430-488 (537)
82 PRK04069 serine-protein kinase 91.6 0.23 5E-06 48.5 4.5 51 88-149 45-95 (161)
83 TIGR01924 rsbW_low_gc serine-p 91.5 0.23 5.1E-06 48.5 4.4 87 88-202 45-131 (159)
84 PRK10600 nitrate/nitrite senso 89.7 0.37 8E-06 55.8 4.6 43 89-146 473-515 (569)
85 COG5000 NtrY Signal transducti 89.6 0.82 1.8E-05 53.6 7.1 52 92-152 607-660 (712)
86 COG4585 Signal transduction hi 89.5 0.37 8.1E-06 52.7 4.2 47 88-149 282-328 (365)
87 COG3920 Signal transduction hi 88.8 0.82 1.8E-05 47.4 6.0 48 88-146 125-174 (221)
88 PRK11644 sensory histidine kin 88.5 0.31 6.7E-06 56.0 2.9 43 89-146 414-456 (495)
89 PRK13560 hypothetical protein; 87.9 0.48 1E-05 56.0 4.1 45 89-146 715-762 (807)
90 COG0643 CheA Chemotaxis protei 87.2 0.55 1.2E-05 56.6 4.0 128 89-241 436-572 (716)
91 PF13581 HATPase_c_2: Histidin 87.1 0.81 1.8E-05 41.9 4.3 81 87-200 33-113 (125)
92 PRK11073 glnL nitrogen regulat 86.9 1.2 2.6E-05 47.5 6.0 48 88-150 240-299 (348)
93 KOG0787|consensus 86.3 2.4 5.2E-05 47.3 7.9 123 87-247 262-385 (414)
94 COG3850 NarQ Signal transducti 81.6 2 4.3E-05 49.8 5.0 43 89-146 485-527 (574)
95 COG2172 RsbW Anti-sigma regula 79.2 4.7 0.0001 39.3 6.1 82 87-202 42-126 (146)
96 PRK10935 nitrate/nitrite senso 74.9 3.8 8.3E-05 46.8 4.9 25 121-145 492-517 (565)
97 COG4564 Signal transduction hi 72.7 15 0.00032 40.8 8.3 57 82-149 352-408 (459)
98 COG4192 Signal transduction hi 72.4 7.1 0.00015 44.8 6.0 47 89-150 568-617 (673)
99 COG4251 Bacteriophytochrome (l 71.4 4.9 0.00011 47.6 4.6 66 121-203 657-728 (750)
100 COG5002 VicK Signal transducti 69.9 5.1 0.00011 44.6 4.1 54 121-189 362-417 (459)
101 COG2972 Predicted signal trans 69.8 12 0.00025 42.7 7.2 55 83-149 348-404 (456)
102 PRK13559 hypothetical protein; 67.5 5 0.00011 43.1 3.5 44 89-145 271-318 (361)
103 COG2205 KdpD Osmosensitive K+ 64.9 17 0.00037 44.5 7.4 37 118-154 794-830 (890)
104 KOG1845|consensus 61.8 4.3 9.4E-05 49.2 1.8 95 88-204 149-246 (775)
105 COG2865 Predicted transcriptio 36.9 46 0.00099 38.6 4.8 81 82-189 267-351 (467)
106 KOG1845|consensus 34.5 29 0.00062 42.5 2.8 19 134-152 2-20 (775)
107 KOG0355|consensus 33.4 1E+02 0.0022 38.0 7.0 123 88-239 56-192 (842)
108 COG3851 UhpB Signal transducti 30.4 66 0.0014 36.3 4.5 26 119-144 429-454 (497)
109 PRK03094 hypothetical protein; 28.5 31 0.00066 30.7 1.3 29 493-521 11-44 (80)
110 smart00751 BSD domain in trans 23.8 41 0.00089 26.8 1.1 33 602-643 13-45 (51)
No 1
>KOG0020|consensus
Probab=100.00 E-value=3e-154 Score=1232.68 Aligned_cols=634 Identities=55% Similarity=0.888 Sum_probs=559.7
Q ss_pred cccccccccCCCcCCCCCCCCCchhhhhhhccCCCChhhHHHHhhhccccchHhhHHHHHHHHHhcCCCCChhhHHHhHH
Q psy13233 16 IEQTVDVNIGESREGSRTDADAPKVEKERIQLDGLNPAQLEELRKKAESYKFEAEVNRMMKLIINSLYRNKEIFLRELIS 95 (704)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~e~~~Fqaev~~Ll~LL~~sLYs~~~ifLRELIq 95 (704)
...+++.++|..++|++|++++..|++++|++||++++|.+++|+++++|.|||||+|||+||+||||+|++||||||||
T Consensus 26 ~~~~~ee~~~~~~e~sk~e~e~~~ree~si~lDgl~~~q~kelR~kaeKf~FQaEVnRmMklIINSLY~NKeIFLRELIS 105 (785)
T KOG0020|consen 26 LHATAEEDLGDVTEGSKTEEEIGGREEESIQLDGLNVSQIKELRSKAEKFEFQAEVNRMMKLIINSLYRNKEIFLRELIS 105 (785)
T ss_pred cccchhhhccccCCCCcchhhhccccchheecccccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence 56689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHhhhhhhcccc
Q psy13233 96 NASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKH 175 (704)
Q Consensus 96 NA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l~~~~~~~~ 175 (704)
||+||++|+|+++|+|+..++.++++.|.|..|++++.|+|+|+|||||++||++||||||+|||++|+++|++.+....
T Consensus 106 NASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~DtGiGMT~edLi~NLGTIAkSGTs~Fl~Km~~~~~~~~ 185 (785)
T KOG0020|consen 106 NASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDTGIGMTREDLIKNLGTIAKSGTSEFLEKMQDSGDSEG 185 (785)
T ss_pred hhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecccCCccHHHHHHhhhhhhcccHHHHHHHhhccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987532112
Q ss_pred cccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCceEEEeCCCCCCCCCccEEEEEeccchhccCCHHHHHH
Q psy13233 176 DLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQISLELKEEASDFLEVNTLKD 255 (704)
Q Consensus 176 d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f~I~~~~~~~~~~~GT~I~L~Lked~~e~l~~~~lk~ 255 (704)
...++||||||||||||+|||+|+|+|+||++.||+|+|++++|+|.++|++++++|||+|+|||++++.+||++++|++
T Consensus 186 ~~~dlIGQFGVGFYsAfLVAD~vvVtsKhNdD~QyiWESdan~FsvseDprg~tL~RGt~ItL~LkeEA~dyLE~dtlke 265 (785)
T KOG0020|consen 186 LMNDLIGQFGVGFYSAFLVADRVVVTSKHNDDSQYIWESDANSFSVSEDPRGNTLGRGTEITLYLKEEAGDYLEEDTLKE 265 (785)
T ss_pred hHHHHHHhcchhhhhhhhhcceEEEEeccCCccceeeeccCcceeeecCCCCCcccCccEEEEEehhhhhhhcchhHHHH
Confidence 22579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCcceEEeccccccccCCcccccccCCcchhccccCcchhhhhhhhccccCccccceeeecccccccccCCC
Q psy13233 256 LIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEKKVEGDEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLNDNKP 335 (704)
Q Consensus 256 likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~N~~~~ 335 (704)
+|++||+||+|||++|.+++.++++|.+|+++.+ ++..+ ++++.|||+ +++|||||+|.+|+|+|+.+|+.+|
T Consensus 266 LvkkYSqFINFpI~lWsSKt~~~E~pvEEe~~t~----e~~~e-d~ea~vEEe--e~EKpKTKKV~kT~wdWel~NdvKp 338 (785)
T KOG0020|consen 266 LVKKYSQFINFPISLWSSKTVEVEVPVEEEEETE----EDSTE-DKEAAVEEE--EEEKPKTKKVEKTVWDWELLNDVKP 338 (785)
T ss_pred HHHHHHHhcCCceeeeeccceeeecccccccccc----ccccc-chhhhhhhh--hhccccccchhhcchhhhhhcccch
Confidence 9999999999999999999999999988764321 12222 445566654 3556999999999999999999999
Q ss_pred cccCCCCCCCHHHHHHHHhhhcCCCCCCceeEeeeeccccceeEEEEecCCCCCccccccc-cccccchhhHHHH-----
Q psy13233 336 IWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSFNRYG-TTTDNIKNELKKI----- 409 (704)
Q Consensus 336 ~w~r~~~~vt~eey~~fyk~~~~~~~~~l~~~hf~~eg~~~~~~~l~vp~~~p~d~~~~~~-~~~~~ik~~vkki----- 409 (704)
||+|+|++||++||..|||++++|+.+||+|+||++||+|+||+|||||+.+|.++|+.|+ ++++|||+||+++
T Consensus 339 IW~R~p~eV~EdEYt~FYkSlsKds~dPma~~HF~aEGeVtFksiLyVP~~~P~~lf~~Yg~~~~dniKLYVrrVFItDe 418 (785)
T KOG0020|consen 339 IWLRKPKEVTEDEYTKFYKSLSKDSTDPMAYIHFTAEGEVTFKSILYVPKKAPRDLFDEYGSKKSDNIKLYVRRVFITDE 418 (785)
T ss_pred hhccCchhcchHHHHHHHHhhhccccCccceeeeeccccEEEEEEEEeCCCCchHHHHHhccccccceeEEEEEEEecch
Confidence 9999999999999999999999999999999999999999999999999999999999987 7789999998442
Q ss_pred -----------------------------------HHHHHHHHHHHhhhh-----------hcccccccccccccccCcc
Q psy13233 410 -----------------------------------ELKLKKVIMRNILLT-----------IQINVFSFSMKLGVIEDPA 443 (704)
Q Consensus 410 -----------------------------------~~~I~k~v~~kl~~~-----------~~~~~fg~~lK~G~~eD~~ 443 (704)
.+-|+|+..+|...+ .+|+.||.+||+|++||++
T Consensus 419 F~dmmPkYLsFikGvVDSDdLPLNVSrE~LQQHkllKvIkKKLvrK~LDmikKia~e~~~d~FW~EFgtniKLGviED~s 498 (785)
T KOG0020|consen 419 FHDMMPKYLSFIKGVVDSDDLPLNVSRETLQQHKLLKVIKKKLVRKVLDMIKKIAGEKYDDIFWKEFGTNIKLGVIEDPS 498 (785)
T ss_pred HHHHhHHHHHHHhhccCcCcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHhccceeeeeeeCcc
Confidence 333444433333332 2699999999999999999
Q ss_pred cHHHHHhhhcccccCC-CCCccHHHHHhhcCCCCCeEEEEEcCCHHHHhcChHHHHHHHcCceEEEeccchhHHHhhccc
Q psy13233 444 NRSRLAKLLMFQSSSS-TEPTSLSDYVKRMKPKQDHIYYIAGASRKEVESSPFVERLLRKGYEILYLVEAVDEYTLSSLP 522 (704)
Q Consensus 444 nrekL~~LlrF~Ss~~-~~~~SLdeYv~rmke~Qk~IYYltg~s~~~~~~SP~lE~~k~kG~EVL~l~dpIDe~~i~~l~ 522 (704)
||.+||+||||+||.+ ++.+||++||+|||+.|+.||||+|.|+++++.|||+|+|.+|||||||+++|+||||||.|.
T Consensus 499 Nr~rLAKLLrFqss~~~~~~TsLdqYveRMK~kQ~~IyymaGssr~e~E~sPfvERLlkKGyEVi~ltepVDEyciqalp 578 (785)
T KOG0020|consen 499 NRTRLAKLLRFQSSNHPTKITSLDQYVERMKEKQDKIYYMAGSSRKEVEKSPFVERLLKKGYEVIYLTEPVDEYCIQALP 578 (785)
T ss_pred cHHHHHHHHhhhccCCCCCcccHHHHHHHHhhccccEEEecCCcHhhhccCcHHHHHHhcCceEEEEcchhHHHHHHhhh
Confidence 9999999999999975 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceeeccccccCcccchhh-------HHHHHHHHHHHHHhhcccceeEEEEEEccchhhhHHHHHh----------
Q psy13233 523 EFEGKKFQNIAKEGLSISANKEK-------MEALKTLQLYTKSLLRGLCLYVRRVFITDEFTDMLPKYLS---------- 585 (704)
Q Consensus 523 ~f~gkkf~~V~k~~l~l~~~ee~-------~e~~~~l~~~~k~~l~~~~~~V~~V~IS~rl~d~~P~~l~---------- 585 (704)
+|+||+|+||+|+|+.+++.+.. ++++++|+.|++..+-. ..|.++.||+||+++ ||.|.
T Consensus 579 e~d~KkFQNVaKEG~k~~~~eK~Ke~~e~l~~~FepL~~W~k~~alk--d~ieka~vSqrL~~s-pcalVas~~GwsgNm 655 (785)
T KOG0020|consen 579 EFDGKKFQNVAKEGVKFDKSEKTKESHEALEEEFEPLTKWLKDKALK--DKIEKAVVSQRLTES-PCALVASQYGWSGNM 655 (785)
T ss_pred hhcchhHhHHHhhhcccCcccchhHHHHHHHHHHHHHHHHHHhhHHH--HHHHHHHHHHHhccC-chhhhhhhccccccH
Confidence 99999999999999999876422 56899999999886422 348999999999999 99873
Q ss_pred ----hhcccccCCCcccc--c-cHHHHh---hChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHhhh-hhcccc-CCCh
Q psy13233 586 ----FIQGIVDSDDLPLN--V-SRETLQ---QHKLLKVIRKKLIRKALDMFKKLDPETYKKFWAEYST-NMKLGV-IEDP 653 (704)
Q Consensus 586 ----~~q~v~d~~~~~~~--~-~r~ile---~h~iI~~l~~~i~~~~~d~~~~l~~e~~~~~~~~~~~-~~k~g~-~~d~ 653 (704)
.+|+..-+.+..-+ + ++++++ .||+|+.|++++...- -++...+.+-.+|.| .|++|+ +.|+
T Consensus 656 ERimksqa~~~~kD~~~~~Y~~qKkt~EINPRHPlirell~Ri~ade------eD~t~~d~A~lmf~TAtlrSGf~L~d~ 729 (785)
T KOG0020|consen 656 ERIMKSQAYQKSKDPSKNYYASQKKTFEINPRHPLIRELLRRIAADE------EDETVKDTAVLMFETATLRSGFILQDT 729 (785)
T ss_pred HHHHHHhhhhccCCchhhHHhccCceeeeCCCChHHHHHHHHhhcCc------ccchHHHHHHHHHHHHHhhcCccccch
Confidence 12222222222221 1 334443 8999998888776432 234555788999999 789999 7888
Q ss_pred -hhHHHHhhhhcc
Q psy13233 654 -ANRSRLAKLLMF 665 (704)
Q Consensus 654 -~~~~~~~~llrf 665 (704)
+|..||.+.||-
T Consensus 730 ~~fadrIe~~lr~ 742 (785)
T KOG0020|consen 730 KDFADRIENMLRQ 742 (785)
T ss_pred HHHHHHHHHHHHh
Confidence 899999999985
No 2
>PTZ00130 heat shock protein 90; Provisional
Probab=100.00 E-value=2.3e-126 Score=1094.30 Aligned_cols=581 Identities=38% Similarity=0.644 Sum_probs=490.8
Q ss_pred hccccchHhhHHHHHHHHHhcCCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCC
Q psy13233 61 KAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSG 140 (704)
Q Consensus 61 ~~e~~~Fqaev~~Ll~LL~~sLYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNG 140 (704)
..++|+||||+++||+||+++||||++||||||||||+|||+|+||++++++++++...++.|+|..|+++++|+|+|||
T Consensus 64 ~~e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~DnG 143 (814)
T PTZ00130 64 GIEQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTG 143 (814)
T ss_pred ccceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEECC
Confidence 45889999999999999999999999999999999999999999999999999888888999999999999999999999
Q ss_pred CCCCHHHHHHhhchhhccChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecC-Cce
Q psy13233 141 IGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDA-SSF 219 (704)
Q Consensus 141 iGMT~~eL~~~LgtIa~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~g-g~f 219 (704)
||||++||+++|||||+|||+.|+++++..+ .+ .++||||||||||||||||+|+|+||++++.+|.|+|+| |.|
T Consensus 144 IGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~---~~-~~lIGQFGVGFYSaFmVAdkV~V~Trs~~~~~~~W~s~g~g~y 219 (814)
T PTZ00130 144 IGMTKEDLINNLGTIAKSGTSNFLEAISKSG---GD-MSLIGQFGVGFYSAFLVADKVIVYTKNNNDEQYIWESTADAKF 219 (814)
T ss_pred CCCCHHHHHHHhhhhcccccHHHHHHhhccC---CC-cccccccccchhheeeecCEEEEEEcCCCCceEEEEECCCCcE
Confidence 9999999999999999999999999887531 23 689999999999999999999999999888899999999 999
Q ss_pred EEEeCCCCCCCCCccEEEEEeccchhccCCHHHHHHHHHHhcccCCcceEEeccccccccCCcccccccCCcchhccccC
Q psy13233 220 SIVNDPRGDNLKRGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEKKVEG 299 (704)
Q Consensus 220 ~I~~~~~~~~~~~GT~I~L~Lked~~e~l~~~~lk~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (704)
+|.+.+++...+|||+|+|||++++.+|++.++|++||++||+||+|||+|++.+++.++++.++..+ . + ++ +.
T Consensus 220 ~I~e~~~~~~~~rGT~I~LhLked~~efl~~~~ik~likkYS~fI~~PI~l~~~~~~~~~~~~~~~~~--~-~-~~-~~- 293 (814)
T PTZ00130 220 TIYKDPRGSTLKRGTRISLHLKEDATNLMNDKKLVDLISKYSQFIQYPIYLLHENVYTEEVLADIAKE--M-E-ND-PN- 293 (814)
T ss_pred EEEECCCCCCCCCCcEEEEEECCchhhhccHHHHHHHHHHhhccCCCCEEEccccccccccccccccc--c-c-cc-cc-
Confidence 99998766677899999999999999999999999999999999999999987665555544322110 0 0 01 00
Q ss_pred cchhhhhhhhccccCccccceeeecccccccccCCCcccCCCCCCCHHHHHHHHhhhcCCCCCCceeEeeeeccccceeE
Q psy13233 300 DEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLNDNKPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTFKA 379 (704)
Q Consensus 300 ~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~N~~~~~w~r~~~~vt~eey~~fyk~~~~~~~~~l~~~hf~~eg~~~~~~ 379 (704)
++++++++. +++++|+|+|++++++|+++|+.+|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+|
T Consensus 294 ~~~~e~~~~--~~~~~k~k~v~~~~~~~e~vN~~~aiW~r~~~eit~EeY~eFYk~l~~~~~dPl~~iH~~~Eg~~~~~~ 371 (814)
T PTZ00130 294 YDSVKVEET--DDPNKKTRTVEKKVKKWKLMNEQKPIWLRPPKELTDEDYKKFFSVLSGFNDEPLYHIHFFAEGEIEFKC 371 (814)
T ss_pred ccccccccc--ccccccccccccceeeeeeeccCCCcccCCcccCCHHHHHHHHHHhcCCccCCceeeeeccCCCeeEEE
Confidence 111122211 124577889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCccccccccccccchhhH--------------------------------------------HHHHHHHHH
Q psy13233 380 VLFVPQTQPQDSFNRYGTTTDNIKNEL--------------------------------------------KKIELKLKK 415 (704)
Q Consensus 380 ~l~vp~~~p~d~~~~~~~~~~~ik~~v--------------------------------------------kki~~~I~k 415 (704)
|||||+.+|+++|. +...+.+|++|| ++|++.|+|
T Consensus 372 LLYIP~~ap~~~~~-~~~~~~~ikLYvrrVfI~d~~~dLLP~wL~FVkGVVDSeDLPLNVSRE~LQ~n~~l~~Irk~l~k 450 (814)
T PTZ00130 372 LIYIPSRAPSINDH-LFTKQNSIKLYVRRVLVADEFVEFLPRYMSFVKGVVDSDDLPLNVSREQLQQNKILKAVSKRIVR 450 (814)
T ss_pred EEEecCCCccchhh-hhhccCceEEEEeeEEeecchhhhhhHHHhhhEEEeecCCCCCccCHHHHccCHHHHHHHHHHHH
Confidence 99999999998876 223456677765 455777777
Q ss_pred HHHHHhhhhh--------------------------------------cccccccccccccccCcccHHHHHhhhccccc
Q psy13233 416 VIMRNILLTI--------------------------------------QINVFSFSMKLGVIEDPANRSRLAKLLMFQSS 457 (704)
Q Consensus 416 ~v~~kl~~~~--------------------------------------~~~~fg~~lK~G~~eD~~nrekL~~LlrF~Ss 457 (704)
+|.+.|..+. +|++||.+||+|+++|..||++|++||||+||
T Consensus 451 kil~~L~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~d~e~Y~kF~~~fg~~LK~Gv~eD~~nre~l~~LLrF~Ss 530 (814)
T PTZ00130 451 KILDTFRTLYKEGKKNKETLRAELAKETDEEKKKEIQKKINEPSTYKLIYKEYRKYLKTGCYEDDINRNKIVKLLLFKTM 530 (814)
T ss_pred HHHHHHHHHHhhccccchhcccccccccccccccccccccccHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhheeeeC
Confidence 7777766332 29999999999999999999999999999999
Q ss_pred CCCCCccHHHHHhhcCCCCCeEEEEEcCCHHHHhcChHHHHHHHcCceEEEeccchhHHHhhccccccCCceeecccccc
Q psy13233 458 SSTEPTSLSDYVKRMKPKQDHIYYIAGASRKEVESSPFVERLLRKGYEILYLVEAVDEYTLSSLPEFEGKKFQNIAKEGL 537 (704)
Q Consensus 458 ~~~~~~SLdeYv~rmke~Qk~IYYltg~s~~~~~~SP~lE~~k~kG~EVL~l~dpIDe~~i~~l~~f~gkkf~~V~k~~l 537 (704)
.+++++||++||+||+++|+.|||++|++++++++|||||.|+++|||||||+|||||||+++|.+|+|++|++|+++++
T Consensus 531 ~~~~~~SL~eYv~rMke~Qk~IYY~t~~s~~~~~~SP~lE~~~~kg~EVL~l~d~iDE~~l~~L~e~~gk~~~sV~~~~~ 610 (814)
T PTZ00130 531 LHPKSISLDTYIENMKPDQKFIYYASGDSYEYLSKIPQLQIFKKKNIDVVFLTESVDESCVQRVQEYDGKKFKSIQKGEI 610 (814)
T ss_pred CCCCccCHHHHHhhhccCCeEEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchHHHHHHHHHHhcCceEEEeccccc
Confidence 87789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Ccccch---h----hHHHHHHHHHHHHHhhcccceeEEEEEEccchhhhHHHHHh------------hhcccc-cCCCcc
Q psy13233 538 SISANK---E----KMEALKTLQLYTKSLLRGLCLYVRRVFITDEFTDMLPKYLS------------FIQGIV-DSDDLP 597 (704)
Q Consensus 538 ~l~~~e---e----~~e~~~~l~~~~k~~l~~~~~~V~~V~IS~rl~d~~P~~l~------------~~q~v~-d~~~~~ 597 (704)
+++..+ + ..+++++|..|++..|++. |.+|++|+||+++ ||||. +++++. +.++++
T Consensus 611 ~~~~~~~e~~~~~~~~~~~~~L~~~~k~~L~~~---V~~V~vS~RL~~s-Pa~lv~~e~g~s~~Merimka~~~~~~~~~ 686 (814)
T PTZ00130 611 TFELTEDEKKKEEKVKKMYKALIDVISDTLRNQ---IFKVEISRRLVDA-PCAVVSTEWGLSGQMEKLMKINVNNSDQIK 686 (814)
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHHHhcCc---ccEEEEeccCCCC-CcEEEecCccccHHHHHHHHHhhccccccc
Confidence 876321 1 1345888999999999975 9999999999999 99973 111111 111122
Q ss_pred ccccHHHHh---hChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHhhh-hhcccc-CCCh-hhHHHHhhhhc
Q psy13233 598 LNVSRETLQ---QHKLLKVIRKKLIRKALDMFKKLDPETYKKFWAEYST-NMKLGV-IEDP-ANRSRLAKLLM 664 (704)
Q Consensus 598 ~~~~r~ile---~h~iI~~l~~~i~~~~~d~~~~l~~e~~~~~~~~~~~-~~k~g~-~~d~-~~~~~~~~llr 664 (704)
.+..+++|+ +||||+.|++.+.. ..-++...+.++.+|++ .|-+|+ ++|| ++.+||.+||.
T Consensus 687 ~~~~k~iLEINp~Hpii~~L~~~~~~------~~~~~~~~~~a~~Lyd~AlL~~G~~l~DP~~fa~ri~~ll~ 753 (814)
T PTZ00130 687 AMSGQKILEINPDHPIMIDLLKRSVS------NPKDSQLTESIKIIYQSAKLASGFDLEDTADLAQIVYDHIN 753 (814)
T ss_pred cccCCeEEEECCCCHHHHHHHHHHhc------CcchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 333455555 99999998765421 11122345678999999 557765 9999 88999999996
No 3
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=100.00 E-value=5.4e-126 Score=1089.96 Aligned_cols=580 Identities=44% Similarity=0.712 Sum_probs=487.8
Q ss_pred cccchHhhHHHHHHHHHhcCCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCC
Q psy13233 63 ESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIG 142 (704)
Q Consensus 63 e~~~Fqaev~~Ll~LL~~sLYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiG 142 (704)
|+|.||||+++||+||+||||||+++|||||||||+|||+++||++++++++++..+++.|+|..|.++++|+|.|||+|
T Consensus 3 e~~~Fqae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiG 82 (701)
T PTZ00272 3 ETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIG 82 (701)
T ss_pred ceEecHHHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCC
Confidence 78999999999999999999999999999999999999999999999999888777889999999999999999999999
Q ss_pred CCHHHHHHhhchhhccChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecC-CceEE
Q psy13233 143 MTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDA-SSFSI 221 (704)
Q Consensus 143 MT~~eL~~~LgtIa~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~g-g~f~I 221 (704)
||++||.++|||||+||++.|+++++.+ .+ .++|||||||||||||||++|+|+||++++.+|.|+|+| |.|+|
T Consensus 83 Mt~edl~~~LgtIa~SGt~~f~~~~~~~----~~-~~~iGqFGvGfyS~Fmvad~V~V~Srs~~~~~~~W~s~~~g~y~i 157 (701)
T PTZ00272 83 MTKADLVNNLGTIARSGTKAFMEALEAG----GD-MSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAGGTFTI 157 (701)
T ss_pred CCHHHHHHHhhhhhhcchHHHHHHhhcc----CC-ccccCCCCcceEEEEEeccEEEEEEecCCCceEEEEECCCCcEEE
Confidence 9999999999999999999999888643 33 689999999999999999999999999877899999999 99999
Q ss_pred EeCCCCCCCCCccEEEEEeccchhccCCHHHHHHHHHHhcccCCcceEEeccccccccCCcccccccCCcchhccccCcc
Q psy13233 222 VNDPRGDNLKRGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEKKVEGDE 301 (704)
Q Consensus 222 ~~~~~~~~~~~GT~I~L~Lked~~e~l~~~~lk~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (704)
.+.+. ....|||+|+|||++++.+|+++++|+++|++||+||+|||+++..++++.+++.++++ ++++++++ ++
T Consensus 158 ~~~~~-~~~~~GT~I~L~Lk~d~~ef~~~~~i~~li~kYs~fi~~PI~l~~~~~~~~~~~~~~~~--~~~~~~~~---~~ 231 (701)
T PTZ00272 158 TSTPE-SDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEE--DTKKADED---GE 231 (701)
T ss_pred EeCCC-CCCCCCCEEEEEECCchHHhccHHHHHHHHHHhccccCcceEEeeccccccccCcchhh--hccccccc---cc
Confidence 98753 45689999999999999999999999999999999999999998766655444432211 11111101 11
Q ss_pred hhhhhhh--hccccCccccceeeecccccccccCCCcccCCCCCCCHHHHHHHHhhhcCCCCCCceeEeeeeccccceeE
Q psy13233 302 EAKVEEA--EDKEEKPKTKKVDKTIWDWEQLNDNKPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTFKA 379 (704)
Q Consensus 302 ~~~~~~~--~~~~~~~k~k~~~~~~~~~~~~N~~~~~w~r~~~~vt~eey~~fyk~~~~~~~~~l~~~hf~~eg~~~~~~ 379 (704)
++.+++. +++++++|++++++++|+|+++|+.+|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|++
T Consensus 232 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~iN~~~~lW~r~~~~i~~eey~~Fyk~~~~~~~~Pl~~ih~~~eg~~~~~~ 311 (701)
T PTZ00272 232 EPKVEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRS 311 (701)
T ss_pred ccccccccccccccccccccccccccchhhcccCcCCeecCcccCCHHHHHHHHHHhcCCcCCCceeeeeccCCceeeEE
Confidence 1222221 22345678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCccccccccccccchhhH--------------------------------------------HHHHHHHHH
Q psy13233 380 VLFVPQTQPQDSFNRYGTTTDNIKNEL--------------------------------------------KKIELKLKK 415 (704)
Q Consensus 380 ~l~vp~~~p~d~~~~~~~~~~~ik~~v--------------------------------------------kki~~~I~k 415 (704)
|||||+.+|+++|+. ...+.+|++|| ++|+++|.|
T Consensus 312 llyiP~~~~~~~~~~-~~~~~~i~LY~~rVfI~d~~~~llP~~l~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~i~~~i~~ 390 (701)
T PTZ00272 312 IMFVPKRAPFDMFEP-NKKRNNIKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVK 390 (701)
T ss_pred EEEeCCCCccchhhh-hhccCceEEEEeeEEEecchhhhhHHHHhheeEEeecCCCCCccCHHHHccCHHHHHHHHHHHH
Confidence 999999999999964 22345666554 456777777
Q ss_pred HHHHHhhhhh--------cccccccccccccccCcccHHHHHhhhcccccCC-CCCccHHHHHhhcCCCCCeEEEEEcCC
Q psy13233 416 VIMRNILLTI--------QINVFSFSMKLGVIEDPANRSRLAKLLMFQSSSS-TEPTSLSDYVKRMKPKQDHIYYIAGAS 486 (704)
Q Consensus 416 ~v~~kl~~~~--------~~~~fg~~lK~G~~eD~~nrekL~~LlrF~Ss~~-~~~~SLdeYv~rmke~Qk~IYYltg~s 486 (704)
+|.+.|..+. +|++||.+||+|+++|.+||++|++||||+||.+ ++++||++||+|||++|+.|||++|+|
T Consensus 391 ki~~~l~~la~~~~~y~~f~~~~g~~lK~G~~~D~~~~~~l~~Llrf~ss~~~~~~~sL~eYv~rmk~~Q~~IYY~~~~s 470 (701)
T PTZ00272 391 KCLEMFDEVAENKEDYKQFYEQFGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDS 470 (701)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHhhhhheeeccCHhHHHHHHHhhceeecCCCCceeeHHHHHHhhccCCceEEEEeCCC
Confidence 7777776553 4999999999999999999999999999999964 679999999999999999999999999
Q ss_pred HHHHhcChHHHHHHHcCceEEEeccchhHHHhhccccccCCceeeccccccCcccchh-------hHHHHHHHHHHHHHh
Q psy13233 487 RKEVESSPFVERLLRKGYEILYLVEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKE-------KMEALKTLQLYTKSL 559 (704)
Q Consensus 487 ~~~~~~SP~lE~~k~kG~EVL~l~dpIDe~~i~~l~~f~gkkf~~V~k~~l~l~~~ee-------~~e~~~~l~~~~k~~ 559 (704)
++++++|||+|.|++||||||||+||||+|||++|.+|+|++|++|+++++++++.++ ..+++++|++|++++
T Consensus 471 ~~~~~~sP~lE~~~~kg~EVL~l~dpiDe~~i~~l~ey~~k~f~sV~~~~~~l~~~~~e~~~~~~~~~~~~~L~~~~k~~ 550 (701)
T PTZ00272 471 KKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKEV 550 (701)
T ss_pred HHHHHhChHHHHHHhCCCeEEEeCCcHHHHHHHHHHhcCCCceEecccccccccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998864211 134688899999999
Q ss_pred hcccceeEEEEEEccchhhhHHHHHh------------h--hcccccCCCccccccHHHHh---hChHHHHHHHHHHHHH
Q psy13233 560 LRGLCLYVRRVFITDEFTDMLPKYLS------------F--IQGIVDSDDLPLNVSRETLQ---QHKLLKVIRKKLIRKA 622 (704)
Q Consensus 560 l~~~~~~V~~V~IS~rl~d~~P~~l~------------~--~q~v~d~~~~~~~~~r~ile---~h~iI~~l~~~i~~~~ 622 (704)
|++. |.+|.+|+||+++ ||||. . +|++.+.+...+++.+++|+ +||||+.|++.+...-
T Consensus 551 L~~k---V~~VkvS~RL~~s-Pa~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~kkiLEINP~HpiIk~L~~~~~~~~ 626 (701)
T PTZ00272 551 LGDK---VEKVIVSERLSTS-PCILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADE 626 (701)
T ss_pred hCCc---ccEEEEeccCCCC-CeEEEecccchhHHHHHHHHhcccccccccccccCCeEEEECCCCHHHHHHHHHhhccc
Confidence 9975 9999999999988 99973 1 22221111112223455555 9999999866542111
Q ss_pred HHHhhccChHHHHHHHHHhhh-hhcccc-CCCh-hhHHHHhhhhc
Q psy13233 623 LDMFKKLDPETYKKFWAEYST-NMKLGV-IEDP-ANRSRLAKLLM 664 (704)
Q Consensus 623 ~d~~~~l~~e~~~~~~~~~~~-~~k~g~-~~d~-~~~~~~~~llr 664 (704)
-++..-+.++.+|++ .|-.|+ ++|| ++.+|+.+||+
T Consensus 627 ------~~~~~~~la~~LyD~AlL~~G~~leDp~~f~~Ri~~lL~ 665 (701)
T PTZ00272 627 ------NDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIK 665 (701)
T ss_pred ------chHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHH
Confidence 112344778999999 567776 9999 88999999996
No 4
>KOG0019|consensus
Probab=100.00 E-value=3.6e-125 Score=1035.80 Aligned_cols=532 Identities=37% Similarity=0.666 Sum_probs=482.9
Q ss_pred hhccccchHhhHHHHHHHHHhcCCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeC
Q psy13233 60 KKAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDS 139 (704)
Q Consensus 60 ~~~e~~~Fqaev~~Ll~LL~~sLYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DN 139 (704)
+.+|+|.||||+++||+++++++||++++|||||||||+|||+|+||+++++|+.+ .+++.|+|.+|+++++|+|.|+
T Consensus 32 ~~~et~~fqaE~~qLm~lii~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~--~~~l~I~i~~nk~~~tlti~Dt 109 (656)
T KOG0019|consen 32 EPQETHEFQAETNQLMDIVAKSLYSHKEVFLRELISNASDALEKLRYLELKGDEKA--LPELEIRIITNKDKRTITIQDT 109 (656)
T ss_pred ccccceehhhhHHhHHHHHHHHhhcchHHHHHhhhccccchHHHHHHHhhcCcccc--ccceeEEeccCCCcceEEEEec
Confidence 34589999999999999999999999999999999999999999999999999877 7899999999999999999999
Q ss_pred CCCCCHHHHHHhhchhhccChhhHHHhhhh-hhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecC-C
Q psy13233 140 GIGMTKADLVKNLGTIAKSGTAEFLSQMSD-KENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDA-S 217 (704)
Q Consensus 140 GiGMT~~eL~~~LgtIa~Sgt~~f~~~l~~-~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~g-g 217 (704)
|||||++||++||||||+|||++|++++++ + ++ .++||||||||||+|||||+|+|+|+++++.++.|+|+| |
T Consensus 110 GIGMTk~dLvnnLGTIAkSGtK~Fmealkea~----ad-~~~IGQFGvGFYSaylVAdkV~V~tk~~~~e~y~Wes~~~g 184 (656)
T KOG0019|consen 110 GIGMTKEDLVNNLGTIAKSGSKAFLEALKEAE----AE-SNLIGQFGVGFYSAFMVADRVVVTTRHPADEGLQWTSNGRG 184 (656)
T ss_pred CCCcCHHHHHhhhhhhhhcccHHHHHHHHhcc----cc-hhhhhhcccchhhhhhhhheeEEeeccCCCcceeeecCCCC
Confidence 999999999999999999999999999994 4 44 789999999999999999999999999988899999999 9
Q ss_pred ceEEEeCCCCCCCCCccEEEEEeccchhccCCHHHHHHHHHHhcccCCcceEEeccccccccCCcccccccCCcchhccc
Q psy13233 218 SFSIVNDPRGDNLKRGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEKKV 297 (704)
Q Consensus 218 ~f~I~~~~~~~~~~~GT~I~L~Lked~~e~l~~~~lk~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (704)
+|+|..++ ...|||+|+|||++++.+|+++.+++++|++||+|+.|||++|++
T Consensus 185 s~~v~~~~---~~~rGTki~l~lKe~~~ey~ee~rikeiVKK~S~Fv~yPI~l~~e------------------------ 237 (656)
T KOG0019|consen 185 SYEIAEAS---GLRTGTKIVIHLKEGDCEFLEEKRIKEVVKKYSNFVSYPIYLNGE------------------------ 237 (656)
T ss_pred ceEEeecc---CccccceEEeeehhhhhhhccHhHHHHHHhhccccccccchhhhh------------------------
Confidence 99999874 389999999999999889999999999999999999999999842
Q ss_pred cCcchhhhhhhhccccCccccceeeecccccccccCCCcccCCCCCCCHHHHHHHHhhhcCCCCCCceeEeeeeccccce
Q psy13233 298 EGDEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLNDNKPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTF 377 (704)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~N~~~~~w~r~~~~vt~eey~~fyk~~~~~~~~~l~~~hf~~eg~~~~ 377 (704)
.+|..+|||||+|++||+|||.+|||+++|||++|||++||++||+++|
T Consensus 238 -------------------------------k~N~tKpiW~rnp~dit~eey~eFYksl~ndw~d~lav~hf~~eg~lef 286 (656)
T KOG0019|consen 238 -------------------------------RVNNLKAIWTMNPKEVNEEEHEEFYKSVSGDWDDPLYVLHFKTDGPLSI 286 (656)
T ss_pred -------------------------------hhhccCcccccCchhhhHHHHHHHHHhhcccccchhhHhhhccccceEE
Confidence 3899999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCccccccccccccchhhHHH----------------------------------------HHHHHHHHH
Q psy13233 378 KAVLFVPQTQPQDSFNRYGTTTDNIKNELKK----------------------------------------IELKLKKVI 417 (704)
Q Consensus 378 ~~~l~vp~~~p~d~~~~~~~~~~~ik~~vkk----------------------------------------i~~~I~k~v 417 (704)
|||||||+++|||+|+.. ++++||++||++ |.+.|+|++
T Consensus 287 rail~vP~rap~~lF~~~-kk~n~i~Ly~rrv~I~d~~~~lipe~l~fv~gvVdSeDlPLNiSremlQ~~~i~k~~rk~l 365 (656)
T KOG0019|consen 287 RSIFYIPKRAPNSMFDMR-KKKNGIKLYARRVLITDDAGDLIPEWLRFVRGVVDSEDIPLNLSREMLQENAVLRKLRKVL 365 (656)
T ss_pred EEEEeccccCcchhhhhh-hccCceEEEEEEEecCchhHHHHHHHhchheeccccccCccchhHHHHhhhhHHHHHHHHH
Confidence 999999999999999984 778999988743 355556666
Q ss_pred HHHhhhhh------------cccccccccccccccCcccHHH-HHhhhcccccCC-CCCccHHHHHhhcCCCCCeEEEEE
Q psy13233 418 MRNILLTI------------QINVFSFSMKLGVIEDPANRSR-LAKLLMFQSSSS-TEPTSLSDYVKRMKPKQDHIYYIA 483 (704)
Q Consensus 418 ~~kl~~~~------------~~~~fg~~lK~G~~eD~~nrek-L~~LlrF~Ss~~-~~~~SLdeYv~rmke~Qk~IYYlt 483 (704)
.+|+.++| +|++||++||+|+++|+.|+.+ |++||||+||.+ ++++||++||+||+++|++|||||
T Consensus 366 ~~k~l~~~~e~a~d~e~Y~kFy~~f~~~lk~gi~e~s~~~~k~~a~lLry~ss~s~~~~~Sl~dYv~rm~~~qk~iyyi~ 445 (656)
T KOG0019|consen 366 PQKILEMFQDLAKDAEKYKKFFKNYGLFLKEGIVTASEQQVKEIAKLLRYESSKSGEGATSLDDYVERMREGQKNIYYIT 445 (656)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhcccchhhhhhhHHHHHhhhhccccccccccHHHHHHhhcccccceEEec
Confidence 66666665 3999999999999999999999 999999999965 789999999999999999999999
Q ss_pred cCCHHHHhcChHHHHHHHcCceEEEeccchhHHHhhccccccCCceeeccccccCcccchhh-------HHHHHHHHHHH
Q psy13233 484 GASRKEVESSPFVERLLRKGYEILYLVEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEK-------MEALKTLQLYT 556 (704)
Q Consensus 484 g~s~~~~~~SP~lE~~k~kG~EVL~l~dpIDe~~i~~l~~f~gkkf~~V~k~~l~l~~~ee~-------~e~~~~l~~~~ 556 (704)
|+|+..+++|||+|+++++|+|||||.|||||+++++|.+|+|++|++|+|+++++++++++ ..+++.|+.|+
T Consensus 446 ~~s~~~~~~sp~~E~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsvtkEglel~e~ee~~~k~ee~k~efe~lck~m 525 (656)
T KOG0019|consen 446 APNRQLAESSPYYEAFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSVTKEGVELPEDDEEKAKDEESKKEFEELCKWM 525 (656)
T ss_pred cchhhhhhcchHHHHHHhcCceeEeeeccHHHHHHHhhhhhcccceeccchhhccCCccchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999844321 34788999999
Q ss_pred HHhhcccceeEEEEEEccchhhhHHHHHh--------------hhcccccCCCccccccHHHHh---hChHHHHHHHHHH
Q psy13233 557 KSLLRGLCLYVRRVFITDEFTDMLPKYLS--------------FIQGIVDSDDLPLNVSRETLQ---QHKLLKVIRKKLI 619 (704)
Q Consensus 557 k~~l~~~~~~V~~V~IS~rl~d~~P~~l~--------------~~q~v~d~~~~~~~~~r~ile---~h~iI~~l~~~i~ 619 (704)
|+.|++. |.+|.||.||+++ |||+. .+|++.|.+.+.+++.|++++ +||||+.|+++..
T Consensus 526 K~iL~~k---VekV~vs~Rlvss-Pc~I~t~~~gwsAnmeriMkAqal~d~s~~~ym~~kk~lEINP~hpivk~L~~~~~ 601 (656)
T KOG0019|consen 526 KEILGSK---VEKVTVNNRLVSH-PAMITTLEYGWAARMERIMKAQALTDNETMGYMKAKKHLEINPDHPLVKTLRQLRE 601 (656)
T ss_pred HHHhcCc---eEEEEecCcccCC-ceEEEecccccchhHHHHHhhhhccccChhhhccccceeeeCCCChHHHHHHHHHh
Confidence 9999974 9999999999999 99973 377888999999999988777 9999999999887
Q ss_pred HHHHHHhhccChHHHHHHHHHhhh-hhcccc-CCCh-hhHHHHhhhhccccc
Q psy13233 620 RKALDMFKKLDPETYKKFWAEYST-NMKLGV-IEDP-ANRSRLAKLLMFQSS 668 (704)
Q Consensus 620 ~~~~d~~~~l~~e~~~~~~~~~~~-~~k~g~-~~d~-~~~~~~~~llrf~s~ 668 (704)
..-.|.. -+..-.+|.+ .+-.|+ ++|| .+..||.++|.--..
T Consensus 602 ~dk~d~~-------k~lv~llfetALlssGfsl~dP~~~~~ri~~ml~~~l~ 646 (656)
T KOG0019|consen 602 SDKNDTA-------KDLVEQLYETALISAGFSLDDPQTMVGRINRLLKSGLG 646 (656)
T ss_pred cCcchhH-------HHHHHHHHHHHHHHcCCCcCChHHHhhHHHHHHHHHhc
Confidence 6655422 2444568888 669999 9999 678899888865443
No 5
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-121 Score=1023.48 Aligned_cols=533 Identities=42% Similarity=0.685 Sum_probs=465.8
Q ss_pred hccccchHhhHHHHHHHHHhcCCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCC
Q psy13233 61 KAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSG 140 (704)
Q Consensus 61 ~~e~~~Fqaev~~Ll~LL~~sLYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNG 140 (704)
..|++.||+|+++||+||+|||||||+||||||||||+|||+|+||+++++|......++++|+|.+|+++++|+|+|||
T Consensus 3 ~~e~~~Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DNG 82 (623)
T COG0326 3 EQETRGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDNG 82 (623)
T ss_pred chhhhhhhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEeCC
Confidence 34789999999999999999999999999999999999999999999999999888888999999999999999999999
Q ss_pred CCCCHHHHHHhhchhhccChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCC-CCcEEEEecC-Cc
Q psy13233 141 IGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNE-DSQYIWESDA-SS 218 (704)
Q Consensus 141 iGMT~~eL~~~LgtIa~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~-d~~~~Wes~g-g~ 218 (704)
||||++|++++|||||+|||++|++.+.++. ++ .++||||||||||||||||+|+|+||+++ +.+++|+|+| |+
T Consensus 83 IGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~---~~-~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g~g~ 158 (623)
T COG0326 83 IGMTKDEVIENLGTIAKSGTKEFLESLSEDQ---KD-SDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDGEGE 158 (623)
T ss_pred CCCCHHHHHHHHHHhhhccHHHHHHHhcccc---cc-ccccccccchhhheeeeeeeEEEEeccCCCCcceEEEEcCCCc
Confidence 9999999999999999999999999987652 34 78999999999999999999999999996 6788999999 99
Q ss_pred eEEEeCCCCCCCC-CccEEEEEeccchhccCCHHHHHHHHHHhcccCCcceEEeccccccccCCcccccccCCcchhccc
Q psy13233 219 FSIVNDPRGDNLK-RGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEKKV 297 (704)
Q Consensus 219 f~I~~~~~~~~~~-~GT~I~L~Lked~~e~l~~~~lk~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (704)
|+|.+.+. .. +||+|+|||+++..+|++.|+|+++|++||.||++||++.+++..
T Consensus 159 ytv~~~~~---~~~~GT~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~~~~~~~~--------------------- 214 (623)
T COG0326 159 YTVEDIDK---EPRRGTEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIYIEGEKEK--------------------- 214 (623)
T ss_pred eEEeeccC---CCCCCcEEEEEECCchHHHhhhhHHHHHHHHHhcccccceEEeeeccc---------------------
Confidence 99998743 34 699999999999999999999999999999999999999643211
Q ss_pred cCcchhhhhhhhccccCccccceeeecccccccccCCCcccCCCCCCCHHHHHHHHhhhcCCCCCCceeEeeeeccccce
Q psy13233 298 EGDEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLNDNKPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTF 377 (704)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~N~~~~~w~r~~~~vt~eey~~fyk~~~~~~~~~l~~~hf~~eg~~~~ 377 (704)
+ ++ +.+|+.+|+.+|||+|++++||+|+|.+||+++++||++||.|+|+++||.++|
T Consensus 215 ~-~~----------------------~~~~e~iN~~~alW~r~ksei~~eeY~eFYk~~~~d~~~Pl~~~h~~~EG~~ey 271 (623)
T COG0326 215 D-EE----------------------VIEWETINKAKALWTRNKSEITDEEYKEFYKHLAHDFDDPLLWIHNKVEGRLEY 271 (623)
T ss_pred c-cc----------------------chhHHHhccccCcccCChhhCChHHHHHHHHHhhcccCCCeEEEecccccceEE
Confidence 0 00 235899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCccccccccccccchhhH--------------------------------------------HHHHHHH
Q psy13233 378 KAVLFVPQTQPQDSFNRYGTTTDNIKNEL--------------------------------------------KKIELKL 413 (704)
Q Consensus 378 ~~~l~vp~~~p~d~~~~~~~~~~~ik~~v--------------------------------------------kki~~~I 413 (704)
.+|||||.++|||+|++ ..+.++|+|| +.|.++|
T Consensus 272 ~~ll~iP~~aPfdl~~~--~~k~glkLYv~rVfI~Dd~~~llP~yl~Fv~GvIDS~DLpLNvSRE~LQ~n~~l~~Irk~l 349 (623)
T COG0326 272 TALLFIPSKAPFDLFRR--DRKRGLKLYVNRVFIMDDAEDLLPNYLRFVRGVIDSEDLPLNVSREILQQNRILAAIRKAL 349 (623)
T ss_pred EEEEEccCCCCcccccc--cccCCcEEEEeeeEEeCChhhhhhHHHhhheeeeecCCCCcccCHHHHccCHHHHHHHHHH
Confidence 99999999999999986 4567788876 4457777
Q ss_pred HHHHHHHhhhhh---------cccccccccccccccCcccHHHHHhhhcccccCC--CCCccHHHHHhhcCCCCCeEEEE
Q psy13233 414 KKVIMRNILLTI---------QINVFSFSMKLGVIEDPANRSRLAKLLMFQSSSS--TEPTSLSDYVKRMKPKQDHIYYI 482 (704)
Q Consensus 414 ~k~v~~kl~~~~---------~~~~fg~~lK~G~~eD~~nrekL~~LlrF~Ss~~--~~~~SLdeYv~rmke~Qk~IYYl 482 (704)
+|+|..-|..+. +|.+||.+||+|+++|..||++|++||||.||.. ++++||++||+|||++|++|||+
T Consensus 350 ~kkvl~~L~~La~~~~e~y~~f~~~fg~~LKeG~~eD~~n~e~l~~lLrf~St~~~~~~~~sl~eYv~rmke~q~~IyY~ 429 (623)
T COG0326 350 TKKVLSMLEKLAKDDPEKYRKFWKQFGLVLKEGLYEDFENKEKLLDLLRFRSTSDSGEKTVSLEEYVSRMKEGQKQIYYI 429 (623)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhEecccCCCccCcccHHHHHHhcccccceeEEe
Confidence 777777776553 4999999999999999999999999999999643 77999999999999999999999
Q ss_pred EcCCHHHHhcChHHHHHHHcCceEEEeccchhHHHhhccccccCCceeeccccccCcccchh--------hHHHHHHHHH
Q psy13233 483 AGASRKEVESSPFVERLLRKGYEILYLVEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKE--------KMEALKTLQL 554 (704)
Q Consensus 483 tg~s~~~~~~SP~lE~~k~kG~EVL~l~dpIDe~~i~~l~~f~gkkf~~V~k~~l~l~~~ee--------~~e~~~~l~~ 554 (704)
+|+|...+++||++|.+++||||||+|+|+||++++.++.+|+|++|++|++++++++...+ .+.+++++.+
T Consensus 430 tges~~~~~~sP~lE~~k~kgieVL~l~d~iDe~~l~~~~e~egk~~~~i~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 509 (623)
T COG0326 430 TGESYQAAKGSPHLELFKAKGIEVLLLTDRIDEFMLTMLPEFEGKPFKSITKGDLDLELLEEEDEADSEEEKKEFKPLLE 509 (623)
T ss_pred ccccHHHHhcCchHHHHHhcCcEEEecCccchHHHhhhhhhccCCcceeeccccccccccchhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998765421 1346888999
Q ss_pred HHHHhhcccceeEEEEEEccchhhhHHHHHhhhcccccCCCcccccc-------------HHHHh---hChHHHHHHHHH
Q psy13233 555 YTKSLLRGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVS-------------RETLQ---QHKLLKVIRKKL 618 (704)
Q Consensus 555 ~~k~~l~~~~~~V~~V~IS~rl~d~~P~~l~~~q~v~d~~~~~~~~~-------------r~ile---~h~iI~~l~~~i 618 (704)
+++..|++. |++|++|.||+++ |+|+ +.+..+++.+|. +.+|+ +||+|+.|....
T Consensus 510 ~~k~~L~~~---vk~Vr~s~rl~ds-pa~l-----~~~~~~~~~~m~r~l~~~~~~~~~~k~ilEiNp~h~lv~~L~~~~ 580 (623)
T COG0326 510 RVKEILGDK---VKDVRLSHRLTDS-PACL-----TTDGADLSTQMERLLKAQGQEVPESKKILEINPNHPLVKKLASLE 580 (623)
T ss_pred HHHHHhcCc---cceeEeecccCCC-ccee-----ecCccchhHHHHHHHHhccccCCccccceeeCcccHHHHHHHhcc
Confidence 999999976 9999999999999 9986 333333444432 33333 899988877665
Q ss_pred HHHHHHHhhccChHHHHHHHHHhhh-hhcccc-CCCh-hhHHHHhhhhcc
Q psy13233 619 IRKALDMFKKLDPETYKKFWAEYST-NMKLGV-IEDP-ANRSRLAKLLMF 665 (704)
Q Consensus 619 ~~~~~d~~~~l~~e~~~~~~~~~~~-~~k~g~-~~d~-~~~~~~~~llrf 665 (704)
-.+. .-+..+.+|+. .|-.|. ++|| +|..||++||--
T Consensus 581 d~~~----------~~~~~~llydqAll~eg~~~~dp~~F~~rln~ll~~ 620 (623)
T COG0326 581 DEAS----------VADLVELLYDQALLAEGGPLEDPAAFIERLNDLLSR 620 (623)
T ss_pred cHHH----------HHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHH
Confidence 2111 12556789998 445566 9999 889999998853
No 6
>PRK05218 heat shock protein 90; Provisional
Probab=100.00 E-value=3.5e-100 Score=873.25 Aligned_cols=527 Identities=41% Similarity=0.654 Sum_probs=455.6
Q ss_pred ccccchHhhHHHHHHHHHhcCCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCC
Q psy13233 62 AESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGI 141 (704)
Q Consensus 62 ~e~~~Fqaev~~Ll~LL~~sLYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGi 141 (704)
.|++.||+|+++||+||+++||+|+++|||||||||+|||+++|+.+++++.......++.|+|.+|+++++|+|+|||+
T Consensus 3 ~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG~ 82 (613)
T PRK05218 3 METGEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEARTLTISDNGI 82 (613)
T ss_pred cceeehhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCCeEEEEECCC
Confidence 58899999999999999999999999999999999999999999999999988777788999999999999999999999
Q ss_pred CCCHHHHHHhhchhhccChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCC--CCcEEEEecC-Cc
Q psy13233 142 GMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNE--DSQYIWESDA-SS 218 (704)
Q Consensus 142 GMT~~eL~~~LgtIa~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~--d~~~~Wes~g-g~ 218 (704)
|||++||..+|++||+||+++|+++++... ..+ .++||+|||||||+||||++|+|.||+.+ +.++.|.++| +.
T Consensus 83 GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~--~~~-~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~~~ 159 (613)
T PRK05218 83 GMTREEVIENLGTIAKSGTKEFLEKLKGDQ--KKD-SQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGEGE 159 (613)
T ss_pred CCCHHHHHHHHHhhccccchhHHHHhhccc--ccc-cccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCCce
Confidence 999999999999999999999998885431 123 68999999999999999999999999965 4689999998 89
Q ss_pred eEEEeCCCCCCCCCccEEEEEeccchhccCCHHHHHHHHHHhcccCCcceEEeccccccccCCcccccccCCcchhcccc
Q psy13233 219 FSIVNDPRGDNLKRGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEKKVE 298 (704)
Q Consensus 219 f~I~~~~~~~~~~~GT~I~L~Lked~~e~l~~~~lk~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (704)
|++.+.+ ...+||+|+|||++++.+|++.++|+++|++||+|+++||+++++
T Consensus 160 ~~i~~~~---~~~~GT~I~l~Lk~~~~e~~e~~~i~~li~kys~~l~~PI~~~~~------------------------- 211 (613)
T PRK05218 160 YTIEEIE---KEERGTEITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVPIKLEKE------------------------- 211 (613)
T ss_pred eEEeECC---CCCCCcEEEEEECcchhhhcCHHHHHHHHHHHHhcCCCCEEEecc-------------------------
Confidence 9998863 347999999999999999999999999999999999999999521
Q ss_pred CcchhhhhhhhccccCccccceeeecccccccccCCCcccCCCCCCCHHHHHHHHhhhcCCCCCCceeEeeeecccccee
Q psy13233 299 GDEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLNDNKPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTFK 378 (704)
Q Consensus 299 ~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~N~~~~~w~r~~~~vt~eey~~fyk~~~~~~~~~l~~~hf~~eg~~~~~ 378 (704)
+|+.+|+.+|+|+++++++++++|..||+.++++|.+||+++||+++|++.|+
T Consensus 212 ---------------------------~~~~in~~~~~w~~~~~~i~~~~~~~fy~~~~~~~~~pl~~i~~~~e~~~~~~ 264 (613)
T PRK05218 212 ---------------------------EEETINSASALWTRSKSEITDEEYKEFYKHLAHDFDDPLFWIHNNVEGPFEYT 264 (613)
T ss_pred ---------------------------cceeecCCccceecCCccccHHHHHHHhhhhcccccCCcEEEEcccCCceEEE
Confidence 26789999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCccccccccccccchhh--------------------------------------------HHHHHHHHH
Q psy13233 379 AVLFVPQTQPQDSFNRYGTTTDNIKNE--------------------------------------------LKKIELKLK 414 (704)
Q Consensus 379 ~~l~vp~~~p~d~~~~~~~~~~~ik~~--------------------------------------------vkki~~~I~ 414 (704)
++||||..+|+++|++ ..++++++| +++|+++|.
T Consensus 265 gll~iP~~~~~~~~~~--~~~~~~~lyvn~v~I~d~~~~lLP~wl~Fv~GVVDs~dLplnvSRE~lq~~~~l~~i~~~l~ 342 (613)
T PRK05218 265 GLLYIPKKAPFDLFNR--DRKGGLKLYVKRVFIMDDAEELLPEYLRFVKGVIDSEDLPLNVSREILQEDRVVKKIRKAIT 342 (613)
T ss_pred EEEEeCCCCccchhhh--cccccEEEEECcEEeeCchhhhchHHHhheEEEeecCCCCCccCHHHHhcCHHHHHHHHHHH
Confidence 9999999999998854 223334333 367788888
Q ss_pred HHHHHHhhhhh---------cccccccccccccccCcccHHHHHhhhcccccCCCCCccHHHHHhhcCCCCCeEEEEEcC
Q psy13233 415 KVIMRNILLTI---------QINVFSFSMKLGVIEDPANRSRLAKLLMFQSSSSTEPTSLSDYVKRMKPKQDHIYYIAGA 485 (704)
Q Consensus 415 k~v~~kl~~~~---------~~~~fg~~lK~G~~eD~~nrekL~~LlrF~Ss~~~~~~SLdeYv~rmke~Qk~IYYltg~ 485 (704)
++|.+.|..+. +|++||.+||+|+++|+.|+++|++||||+||..++++||+||++||+++|+.|||++|.
T Consensus 343 ~kv~~~l~~la~~d~~~y~~f~~~~~~~lK~g~~~D~~~~~~~~~lL~f~ts~~~~~~sL~ey~~rm~~~q~~Iyy~~~~ 422 (613)
T PRK05218 343 KKVLDELEKLAKNDREKYEKFWKEFGPVLKEGLYEDFANREKLAKLLRFASTHEGKYVSLAEYVERMKEGQKKIYYITGD 422 (613)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhhccHHHHHHHHhhceeeecCCCCcccHHHHHHhCcCCCceEEEEeCC
Confidence 88888888765 399999999999999999999999999999997677999999999999999999999999
Q ss_pred CHHHHhcChHHHHHHHcCceEEEeccchhHHHhhccccccCCceeeccccccCccc--c-hh-----hHHHHHHHHHHHH
Q psy13233 486 SRKEVESSPFVERLLRKGYEILYLVEAVDEYTLSSLPEFEGKKFQNIAKEGLSISA--N-KE-----KMEALKTLQLYTK 557 (704)
Q Consensus 486 s~~~~~~SP~lE~~k~kG~EVL~l~dpIDe~~i~~l~~f~gkkf~~V~k~~l~l~~--~-ee-----~~e~~~~l~~~~k 557 (704)
|++++++|||+|.|+++|+|||+|++|+|++++++|.+|+|++|++|+++++++.+ . ++ ..+++++|..|++
T Consensus 423 ~~~~~~~sp~~e~~~~~g~eVl~~~~~~De~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 502 (613)
T PRK05218 423 SREAAKNSPHLELFKKKGIEVLLLTDPIDEFWISYLEEFDGKPFKSVARGDLDLGKEDEEEKEEKEEAEEEFKPLLERLK 502 (613)
T ss_pred CHHHHHhChHHHHHHhcCceEEEeCCccHHHHHHHHHHhcCCceEEeeccccccccccchhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998764 2 11 1457888999999
Q ss_pred HhhcccceeEEEEEEccchhhhHHHHHhh---------hcccccC-CCccccccH---HHHhhChHHHHHHHHHHHHHHH
Q psy13233 558 SLLRGLCLYVRRVFITDEFTDMLPKYLSF---------IQGIVDS-DDLPLNVSR---ETLQQHKLLKVIRKKLIRKALD 624 (704)
Q Consensus 558 ~~l~~~~~~V~~V~IS~rl~d~~P~~l~~---------~q~v~d~-~~~~~~~~r---~ile~h~iI~~l~~~i~~~~~d 624 (704)
+.|++. |.+|.+|.|+.++ |+|+.- .+.+... .+++ ..+ ++|.+||||+.|.+.. +
T Consensus 503 ~~L~~~---v~~V~~s~rl~~~-Pa~~v~~~~~~~~~mer~~~~~~~~~~--~~~~~LeiNp~hplI~~L~~~~-----d 571 (613)
T PRK05218 503 EALGDK---VKDVRLSHRLTDS-PACLVADEGDMSTQMEKLLKAAGQEVP--ESKPILEINPNHPLVKKLADEA-----D 571 (613)
T ss_pred HHhcCc---ceEEEEeccCCCC-CeEEEeCccchHHHHHHHHHhhhhccc--ccceEEEEcCCCHHHHHHHhcc-----C
Confidence 999865 9999999999988 998631 1111000 1111 123 3444999999987621 1
Q ss_pred HhhccChHHHHHHHHHhhh-hhcccc-CCCh-hhHHHHhhhhc
Q psy13233 625 MFKKLDPETYKKFWAEYST-NMKLGV-IEDP-ANRSRLAKLLM 664 (704)
Q Consensus 625 ~~~~l~~e~~~~~~~~~~~-~~k~g~-~~d~-~~~~~~~~llr 664 (704)
.++.-..+..+|.. .|-.|. ++|+ .+..|+.+||.
T Consensus 572 -----~~~~~~~~~~Lyd~AlL~~G~~~~d~~~~~~r~~~ll~ 609 (613)
T PRK05218 572 -----EAKFKDLAELLYDQALLAEGGSLEDPAAFVKRLNELLL 609 (613)
T ss_pred -----hHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHH
Confidence 11244667889988 567775 8998 78999999884
No 7
>PRK14083 HSP90 family protein; Provisional
Probab=100.00 E-value=3e-89 Score=778.36 Aligned_cols=497 Identities=22% Similarity=0.317 Sum_probs=407.1
Q ss_pred ccchHhhHHHHHHHHHhcCCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEE-cCCCcEEEEEeCCCC
Q psy13233 64 SYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKA-DQENKMLHIIDSGIG 142 (704)
Q Consensus 64 ~~~Fqaev~~Ll~LL~~sLYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~-d~~~~~L~I~DNGiG 142 (704)
.|.||+|+++||++|+++||+|+++|||||||||+|||+++|+.. + ..++.|+|.+ |.++++|+|+|||+|
T Consensus 2 ~~~Fqae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~---~-----~~~~~I~I~~~d~~~~~l~I~DnGiG 73 (601)
T PRK14083 2 SHRFQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALD---P-----TAPGRIRIELTDAGGGTLIVEDNGIG 73 (601)
T ss_pred CccchHhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccC---C-----CCCceEEEEEccCCCcEEEEEeCCCC
Confidence 589999999999999999999999999999999999999987642 1 2356788877 888899999999999
Q ss_pred CCHHHHHHhhchhhccChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeC-CCCcEEEEecC-CceE
Q psy13233 143 MTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNN-EDSQYIWESDA-SSFS 220 (704)
Q Consensus 143 MT~~eL~~~LgtIa~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~-~d~~~~Wes~g-g~f~ 220 (704)
||.+++.++|++||+||+..|. +. . .+ .++||||||||||||||||+|+|.||+. ++.++.|.+.+ |.|+
T Consensus 74 mt~eel~~~l~~ig~S~k~~~~--~~-~----~~-~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~g~y~ 145 (601)
T PRK14083 74 LTEEEVHEFLATIGRSSKRDEN--LG-F----AR-NDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKADGTYS 145 (601)
T ss_pred CCHHHHHHHHhhhccchhhhhh--hc-c----cc-cccccccccceEEEEEecCEEEEEeccCCCCceEEEEECCCCceE
Confidence 9999999999999999998763 21 1 12 6799999999999999999999999997 46789999988 9999
Q ss_pred EEeCCCCCCCCCccEEEEEeccchhccCCHHHHHHHHHHhcccCCcceEEeccccccccCCcccccccCCcchhccccCc
Q psy13233 221 IVNDPRGDNLKRGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEKKVEGD 300 (704)
Q Consensus 221 I~~~~~~~~~~~GT~I~L~Lked~~e~l~~~~lk~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (704)
|...+ ++...+||+|+|+++++..+|+++++|++++++||.|++|||++++.
T Consensus 146 i~~~~-~~~~~~GT~I~L~l~~d~~~~~~~~~i~~li~~ys~~i~~pI~l~~~--------------------------- 197 (601)
T PRK14083 146 VRKLE-TERAEPGTTVYLRPRPDAEEWLERETVEELAKKYGSLLPVPIRVEGE--------------------------- 197 (601)
T ss_pred EEeCC-CCCCCCCCEEEEEecCchhhhccHHHHHHHHHHHhccCCCCcccCCc---------------------------
Confidence 99753 34568999999999999999999999999999999999999999420
Q ss_pred chhhhhhhhccccCccccceeeecccccccccCCCcccCCCCCCC--HHHHHHHHhhhcCCCCCCceeEeeeecccccee
Q psy13233 301 EEAKVEEAEDKEEKPKTKKVDKTIWDWEQLNDNKPIWTRKPADIS--DEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTFK 378 (704)
Q Consensus 301 ~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~N~~~~~w~r~~~~vt--~eey~~fyk~~~~~~~~~l~~~hf~~eg~~~~~ 378 (704)
.+.+|+.+|||+|+|++|| +|||.+|||.+++ ++||+|+||++||++. +
T Consensus 198 --------------------------~~~iN~~~~lW~~~~~eit~~~eey~~Fyk~~~~--~~Pl~~ih~~~e~~~~-~ 248 (601)
T PRK14083 198 --------------------------KGGVNETPPPWTRDYPDPETRREALLAYGEELLG--FTPLDVIPLDVPSGGL-E 248 (601)
T ss_pred --------------------------eeeecCCCCCccCCccccCccHHHHHHHHHHhcC--CCchheeeecccchhh-e
Confidence 1379999999999999999 9999999999998 7999999999999987 5
Q ss_pred EEEE-ecCCCCCccccccccccccchhh--------------------------------------------HHHHHHHH
Q psy13233 379 AVLF-VPQTQPQDSFNRYGTTTDNIKNE--------------------------------------------LKKIELKL 413 (704)
Q Consensus 379 ~~l~-vp~~~p~d~~~~~~~~~~~ik~~--------------------------------------------vkki~~~I 413 (704)
++|| ||..+|++. +.+|++| +++|+++|
T Consensus 249 ~~Ly~iP~~~~~~~-------~~~v~LY~~rVfI~d~~~~lLP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~ir~~i 321 (601)
T PRK14083 249 GVAYVLPYAVSPAA-------RRKHRVYLKRMLLSEEAENLLPDWAFFVRCVVNTDELRPTASREALYEDDALAAVREEL 321 (601)
T ss_pred EEEEecCCCCCccc-------cCceEEEeeeeEeecchhhhhHHHHHHheeeeecCCCCCccCHHHHccCHHHHHHHHHH
Confidence 6665 799999852 1122222 37789999
Q ss_pred HHHHHHHhhhhh---------cccccccccccccccCcccHHHHHhhhcccccCCCCCccHHHHHhhcCCCCCeEEEEEc
Q psy13233 414 KKVIMRNILLTI---------QINVFSFSMKLGVIEDPANRSRLAKLLMFQSSSSTEPTSLSDYVKRMKPKQDHIYYIAG 484 (704)
Q Consensus 414 ~k~v~~kl~~~~---------~~~~fg~~lK~G~~eD~~nrekL~~LlrF~Ss~~~~~~SLdeYv~rmke~Qk~IYYltg 484 (704)
.|+|.+.|..+. +|++||.+||+|+++|.+|+++|++||||+||. +.+||+||++|| +.|||++|
T Consensus 322 ~kki~~~L~~la~~d~e~y~~f~~~~g~~lK~g~~~D~~~~~~l~~lL~f~ss~--~~~sL~eY~~r~----~~IyY~~~ 395 (601)
T PRK14083 322 GEAIRKWLIGLATTDPERLRRLLAVHHLGVKALASHDDELLRLILPWLPFETTD--GRMTLAEIRRRH----GVIRYTSS 395 (601)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhceeecCC--CCcCHHHHHHhC----CeEEEEcC
Confidence 999999888775 399999999999999999999999999999996 458999999997 48999999
Q ss_pred C-CHHHHhcChHHHHHHHcCceEEEeccchhHHHhhcccc-ccCCceeeccccccC--cccch-hhHHHHHHHHHHHHHh
Q psy13233 485 A-SRKEVESSPFVERLLRKGYEILYLVEAVDEYTLSSLPE-FEGKKFQNIAKEGLS--ISANK-EKMEALKTLQLYTKSL 559 (704)
Q Consensus 485 ~-s~~~~~~SP~lE~~k~kG~EVL~l~dpIDe~~i~~l~~-f~gkkf~~V~k~~l~--l~~~e-e~~e~~~~l~~~~k~~ 559 (704)
. +..+++ +.|++||+|||+|++||||+++++|.+ |+|++|++|+++++. +++.+ +..+++++|.+++++.
T Consensus 396 ~~~~~~~~-----~~~~~kg~eVl~~~~~iDe~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 470 (601)
T PRK14083 396 VDEFRQLA-----PIARAQGMGVINGGYTYDSELLERLPRLRPGLTVERLDPAELTDRLEPLTPEEELALRPFLAEAREV 470 (601)
T ss_pred HHHHHHHH-----HHHHHCCCeEEEeCCccHHHHHHHHHhhCCCCcEEEechhhhhhhccccchhhHHHHHHHHHHHHHH
Confidence 6 777665 799999999999999999999999988 999999999998874 54332 2356788899999999
Q ss_pred hcccceeEEEEEEccchhhhHHHHHhh------hccccc----CCC--------c--cccccHHHH---hhChHHHHHHH
Q psy13233 560 LRGLCLYVRRVFITDEFTDMLPKYLSF------IQGIVD----SDD--------L--PLNVSRETL---QQHKLLKVIRK 616 (704)
Q Consensus 560 l~~~~~~V~~V~IS~rl~d~~P~~l~~------~q~v~d----~~~--------~--~~~~~r~il---e~h~iI~~l~~ 616 (704)
|++. .|+-|.+|.|+.++ |+|+.. .+.+.. ..+ + +....+.+| .+||||+.|..
T Consensus 471 L~~~--~~~v~~~s~rl~~~-Pa~~v~~e~~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~~LeiN~~hpli~~l~~ 547 (601)
T PRK14083 471 LAPF--GCDVVIRHFEPADL-PALYLHDRAAQHSREREEAVEEADDLWADILGSLDESQPAPRARLVLNLRNPLVRRLAT 547 (601)
T ss_pred hCcc--ceEEEEEcCCCCCC-CEEEEeCchhHHHHHHHhhhhhcccchhhhhhhhhhcccccCeEEEECCCCHHHHHHHh
Confidence 9873 36666889999998 998731 111100 000 0 111123344 49999999864
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHhhh-hhcccc-CC--Ch-hhHHHHhhhhc
Q psy13233 617 KLIRKALDMFKKLDPETYKKFWAEYST-NMKLGV-IE--DP-ANRSRLAKLLM 664 (704)
Q Consensus 617 ~i~~~~~d~~~~l~~e~~~~~~~~~~~-~~k~g~-~~--d~-~~~~~~~~llr 664 (704)
. .-.+..-..+..+|+. .|-.|. ++ ++ .+..+|.+||.
T Consensus 548 ~----------~d~~~~~~~~~~Lyd~AlL~~g~~l~~~e~~~~~~~~~~l~~ 590 (601)
T PRK14083 548 L----------GDPKLLSRAVEALYVQALLLGHRPLRPAEMALLNRSLLGLLE 590 (601)
T ss_pred c----------cChHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 2 1111223567788988 445655 55 66 67888888886
No 8
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=100.00 E-value=4.5e-85 Score=736.34 Aligned_cols=410 Identities=43% Similarity=0.690 Sum_probs=319.5
Q ss_pred ccCCHHHHHHHHHHhcccCCcceEEeccccccccCCcccccccCCcchhccccCcchhhhhh----hhccccCcccccee
Q psy13233 246 DFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEKKVEGDEEAKVEE----AEDKEEKPKTKKVD 321 (704)
Q Consensus 246 e~l~~~~lk~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~k~k~~~ 321 (704)
+||++++|++||++||+||+|||++|.++++++++++++++.++++.++++...+++.++++ +++++++||+|+++
T Consensus 1 eyl~~~klk~lvkkyS~Fi~~PI~l~~~k~~~~ev~~ee~~~~~~~~~~~~~~~~~~~~~e~~~~eee~~~~~~k~k~~~ 80 (531)
T PF00183_consen 1 EYLEEYKLKELVKKYSQFISFPIYLWVEKEEEKEVPDEEEEEEEEEKEEEEKKEEEEEKVEEEDEEEEKEEKKPKTKKVK 80 (531)
T ss_dssp GGGSHHHHHHHHHHHHTTSSSEEEEEEEEEEECCCEHHHHHH---HTT-TT--------SSEEEE----S-TTEEEEECC
T ss_pred CcccHHHHHHHHHhhccccccceeEeeeccccccCCcchhhhhhhhhhhccccccccccccccccccccccccccccccc
Confidence 69999999999999999999999999999998888877654322211111110011111111 12235578999999
Q ss_pred eecccccccccCCCcccCCCCCCCHHHHHHHHhhhcCCCCCCceeEeeeeccccceeEEEEecCCCCCcccccccccccc
Q psy13233 322 KTIWDWEQLNDNKPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSFNRYGTTTDN 401 (704)
Q Consensus 322 ~~~~~~~~~N~~~~~w~r~~~~vt~eey~~fyk~~~~~~~~~l~~~hf~~eg~~~~~~~l~vp~~~p~d~~~~~~~~~~~ 401 (704)
+++|+|+++|+++|||+|+|++||++||.+|||+++++|++||+|+||++||+++||||||||+++|+++|+.+ ...++
T Consensus 81 ~~~~~~~~vN~~~piW~r~~~eit~eey~~Fyk~l~~~~~~Pl~~iH~~~eg~~~~~~lLyiP~~~p~~~~~~~-~~~~~ 159 (531)
T PF00183_consen 81 ETVWEWEQVNTQKPIWTRDPKEITDEEYKEFYKSLSKDYDDPLFWIHFNAEGPFEFKSLLYIPKRAPFDLFEND-KKKNG 159 (531)
T ss_dssp EEEEEEEECS--S-GGGSSGGGS-HHHHHHHHHHHHTTSS-ESEEEEEEEESSSEEEEEEEEESS-SCCCCSSS-TT--S
T ss_pred cceeecccccccCcccccchhccchHHHHHHHHHhhhcccCchhheeccccccceeeEEEEeCCCCchhhhhhh-hcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875 45678
Q ss_pred chhhH--------------------------------------------HHHHHHHHHHHHHHhhhhh--------cccc
Q psy13233 402 IKNEL--------------------------------------------KKIELKLKKVIMRNILLTI--------QINV 429 (704)
Q Consensus 402 ik~~v--------------------------------------------kki~~~I~k~v~~kl~~~~--------~~~~ 429 (704)
|++|| ++|+++|+|+|.+.|..+. +|++
T Consensus 160 ikLY~rrVfI~d~~~~llP~~L~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~~~l~kkvl~~l~~l~~d~e~y~~f~~~ 239 (531)
T PF00183_consen 160 IKLYVRRVFITDNFEELLPEYLRFVKGVVDSDDLPLNVSRETLQQNKLLKKIRKKLVKKVLDMLKKLAKDREKYEKFWKE 239 (531)
T ss_dssp EEEEETTEEEESSCGGSS-GGGTT-EEEEEESSS-SSCTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred ceeeeecccccchhhcccchhhheeeeeeeccccCCccchhhhhccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 88876 5667888888888777654 4999
Q ss_pred cccccccccccCcccHHHHHhhhcccccCC-CCCccHHHHHhhcCCCCCeEEEEEcCCHHHHhcChHHHHHHHcCceEEE
Q psy13233 430 FSFSMKLGVIEDPANRSRLAKLLMFQSSSS-TEPTSLSDYVKRMKPKQDHIYYIAGASRKEVESSPFVERLLRKGYEILY 508 (704)
Q Consensus 430 fg~~lK~G~~eD~~nrekL~~LlrF~Ss~~-~~~~SLdeYv~rmke~Qk~IYYltg~s~~~~~~SP~lE~~k~kG~EVL~ 508 (704)
||.+||+||++|..||++|++||||+||.+ ++++||++|++||+++|++||||+|+|++.+++|||+|.|++|||||||
T Consensus 240 ~g~~iK~G~~eD~~n~~kl~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYY~~g~s~~~~~~SP~lE~~k~kG~EVL~ 319 (531)
T PF00183_consen 240 FGKFIKEGVIEDFKNREKLAKLLRFESSKSEGKLTSLDEYVERMKEGQKQIYYLTGESREEAEQSPYLEAFKKKGYEVLF 319 (531)
T ss_dssp HHHHHHHHHHH-GGGHHHHHTT-EEEETTTTTSEEEHHHHHHTS-TT-SEEEEEESSSHHHHHTSGGGHHHHHCT--EEE
T ss_pred HhHHHHhHHhhhhhhhhhcccceeeeccccccccccHHHhhhccccccccceEEecchHHHHhhccchhhHHhhCceEEE
Confidence 999999999999999999999999999965 6899999999999999999999999999999999999999999999999
Q ss_pred eccchhHHHhhccccccCCceeeccccccCcccchhh-------HHHHHHHHHHHHHhhcccceeEEEEEEccchhhhHH
Q psy13233 509 LVEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEK-------MEALKTLQLYTKSLLRGLCLYVRRVFITDEFTDMLP 581 (704)
Q Consensus 509 l~dpIDe~~i~~l~~f~gkkf~~V~k~~l~l~~~ee~-------~e~~~~l~~~~k~~l~~~~~~V~~V~IS~rl~d~~P 581 (704)
|+||||+|||++|.+|+|++|++|+++++++++.+++ ++++++|+.|++..|++. |.+|.||.||+++ |
T Consensus 320 l~dpIDe~~i~~L~e~~gkkf~~I~ke~l~l~~~e~ek~~~e~~~~~~~~L~~~~k~~L~~k---V~~V~vS~RL~~s-P 395 (531)
T PF00183_consen 320 LTDPIDEFVIQQLEEYEGKKFQSIDKEDLDLEEDEEEKKEDEELKEEFKPLTEWLKELLGDK---VEKVKVSNRLVDS-P 395 (531)
T ss_dssp E-SHHHHHHHHHHSEETTEEEEETTBSSSSSSTSHHHHHHHHHHHHHHHHHHHHHHHHHTTS---CSEEEE-SSSSSS-S
T ss_pred eCCchHHHHHHHHhhccccccccccccccccccchhhhhhhhhhhhHHHHHHHHHHhhhhhh---hheecccccccCC-c
Confidence 9999999999999999999999999999998864322 457899999999999976 9999999999998 9
Q ss_pred HHHh--------------hhcccccCCCccccccHHHHh---hChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHhhh-
Q psy13233 582 KYLS--------------FIQGIVDSDDLPLNVSRETLQ---QHKLLKVIRKKLIRKALDMFKKLDPETYKKFWAEYST- 643 (704)
Q Consensus 582 ~~l~--------------~~q~v~d~~~~~~~~~r~ile---~h~iI~~l~~~i~~~~~d~~~~l~~e~~~~~~~~~~~- 643 (704)
||+. .+|++.+.+...++.++++|+ +||||+.|++++...-- ++..-+.++.+|++
T Consensus 396 a~lv~~e~g~s~~Merimkaqa~~~~~~~~~~~~kkiLEINp~HPLIk~L~~~~~~d~~------d~~~~~la~~LyD~A 469 (531)
T PF00183_consen 396 AVLVSSEYGWSANMERIMKAQAMADMSMQEYMPSKKILEINPNHPLIKKLLKLVEKDED------DELAKDLAEQLYDTA 469 (531)
T ss_dssp EEEEE-SSSB-HHHHHHHHHHHCCSTTTSSTSC--EEEEE-TTSHHHHHHHHHHHCCTT------HHHHHHHHHHHHHHH
T ss_pred ceeecccchhHHHHHHHhhhhccccccccccccccceeecCCCCHHHHHHHhhhcccch------hhHHHHHHHHHhhhh
Confidence 8873 134444443333444555555 99999998886531110 11223678899999
Q ss_pred hhcccc-CCCh-hhHHHHhhhhccc
Q psy13233 644 NMKLGV-IEDP-ANRSRLAKLLMFQ 666 (704)
Q Consensus 644 ~~k~g~-~~d~-~~~~~~~~llrf~ 666 (704)
.|..|+ ++|+ ++..|+.+||+=.
T Consensus 470 lL~~G~~l~dp~~F~~Ri~~lL~~~ 494 (531)
T PF00183_consen 470 LLASGFELEDPAAFAKRINKLLEKS 494 (531)
T ss_dssp HHHTTSS-SSHHHHHHHHHHHHHHT
T ss_pred hhhcCCCcccHHHHHHHHHHHHHHh
Confidence 669998 8999 8899999999853
No 9
>KOG0020|consensus
Probab=100.00 E-value=1.2e-34 Score=312.44 Aligned_cols=142 Identities=73% Similarity=1.113 Sum_probs=137.0
Q ss_pred cccceeEEEEEEccchhhhHHHHHhhhcccccCCCccccccHHHHhhChHHHHHHHHHHHHHHHHhhccChHHHHH-HHH
Q psy13233 561 RGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIRKALDMFKKLDPETYKK-FWA 639 (704)
Q Consensus 561 ~~~~~~V~~V~IS~rl~d~~P~~l~~~q~v~d~~~~~~~~~r~ile~h~iI~~l~~~i~~~~~d~~~~l~~e~~~~-~~~ 639 (704)
..+.+||++|+||+.+.||||.+|+|++||+|+.++|+|++|++||||++++.|++++++++|||+++++.++|+. ||.
T Consensus 404 dniKLYVrrVFItDeF~dmmPkYLsFikGvVDSDdLPLNVSrE~LQQHkllKvIkKKLvrK~LDmikKia~e~~~d~FW~ 483 (785)
T KOG0020|consen 404 DNIKLYVRRVFITDEFHDMMPKYLSFIKGVVDSDDLPLNVSRETLQQHKLLKVIKKKLVRKVLDMIKKIAGEKYDDIFWK 483 (785)
T ss_pred cceeEEEEEEEecchHHHHhHHHHHHHhhccCcCcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 3456899999999999999999999999999999999999999999999999999999999999999999999976 999
Q ss_pred HhhhhhccccCCChhhHHHHhhhhcccccCCC-CCcCHHHHHhhcCCCCCeEEEEEcCChhhhc
Q psy13233 640 EYSTNMKLGVIEDPANRSRLAKLLMFQSSSST-EPTSLSDYVKRMKPKQDHIYYIAGASRKESY 702 (704)
Q Consensus 640 ~~~~~~k~g~~~d~~~~~~~~~llrf~s~~~~-~~~sl~~y~~~m~~~q~~iyy~~~~~~~~~~ 702 (704)
+||||+|+|+++|++||.||++||||+||+++ +.|||++||+|||+.|++||||+|.||++..
T Consensus 484 EFgtniKLGviED~sNr~rLAKLLrFqss~~~~~~TsLdqYveRMK~kQ~~IyymaGssr~e~E 547 (785)
T KOG0020|consen 484 EFGTNIKLGVIEDPSNRTRLAKLLRFQSSNHPTKITSLDQYVERMKEKQDKIYYMAGSSRKEVE 547 (785)
T ss_pred HhccceeeeeeeCcccHHHHHHHHhhhccCCCCCcccHHHHHHHHhhccccEEEecCCcHhhhc
Confidence 99999999999999999999999999999987 8999999999999999999999999999864
No 10
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=99.97 E-value=2.8e-31 Score=300.31 Aligned_cols=140 Identities=64% Similarity=1.023 Sum_probs=127.0
Q ss_pred ccceeEEEEEEccchhhhHHHHHhhhcccccCCCccccccHHHHhhChHHHHHHHHHHHHHHHHhhccC--hHHHHHHHH
Q psy13233 562 GLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIRKALDMFKKLD--PETYKKFWA 639 (704)
Q Consensus 562 ~~~~~V~~V~IS~rl~d~~P~~l~~~q~v~d~~~~~~~~~r~ile~h~iI~~l~~~i~~~~~d~~~~l~--~e~~~~~~~ 639 (704)
++.+||++|+||+.+.+++|.||+|++||+|+.++|+|+||++||+|++++.|++.|+++++++|++++ ++.|.+||.
T Consensus 159 ~ikLY~rrVfI~d~~~~llP~~L~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~~~l~kkvl~~l~~l~~d~e~y~~f~~ 238 (531)
T PF00183_consen 159 GIKLYVRRVFITDNFEELLPEYLRFVKGVVDSDDLPLNVSRETLQQNKLLKKIRKKLVKKVLDMLKKLAKDREKYEKFWK 238 (531)
T ss_dssp SEEEEETTEEEESSCGGSS-GGGTT-EEEEEESSS-SSCTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred cceeeeecccccchhhcccchhhheeeeeeeccccCCccchhhhhccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 455899999999999999999999999999999999999999999999999999999999999999975 589999999
Q ss_pred HhhhhhccccCCChhhHHHHhhhhcccccCCC-CCcCHHHHHhhcCCCCCeEEEEEcCChhhh
Q psy13233 640 EYSTNMKLGVIEDPANRSRLAKLLMFQSSSST-EPTSLSDYVKRMKPKQDHIYYIAGASRKES 701 (704)
Q Consensus 640 ~~~~~~k~g~~~d~~~~~~~~~llrf~s~~~~-~~~sl~~y~~~m~~~q~~iyy~~~~~~~~~ 701 (704)
.||.+||+|+++|..||.+|++||||+||+++ ++|||++||+||+++|++||||+|+|+++.
T Consensus 239 ~~g~~iK~G~~eD~~n~~kl~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYY~~g~s~~~~ 301 (531)
T PF00183_consen 239 EFGKFIKEGVIEDFKNREKLAKLLRFESSKSEGKLTSLDEYVERMKEGQKQIYYLTGESREEA 301 (531)
T ss_dssp HHHHHHHHHHHH-GGGHHHHHTT-EEEETTTTTSEEEHHHHHHTS-TT-SEEEEEESSSHHHH
T ss_pred HHhHHHHhHHhhhhhhhhhcccceeeeccccccccccHHHhhhccccccccceEEecchHHHH
Confidence 99999999999999999999999999999876 899999999999999999999999998754
No 11
>KOG0019|consensus
Probab=99.96 E-value=9.4e-30 Score=282.03 Aligned_cols=211 Identities=34% Similarity=0.507 Sum_probs=176.9
Q ss_pred ccccccccccccCcccHHHHHhhhcccccCCCCCccHHHHHhhcCCCCCeEEEEEcCCHHHHhcChHHHHHHHcCceEEE
Q psy13233 429 VFSFSMKLGVIEDPANRSRLAKLLMFQSSSSTEPTSLSDYVKRMKPKQDHIYYIAGASRKEVESSPFVERLLRKGYEILY 508 (704)
Q Consensus 429 ~fg~~lK~G~~eD~~nrekL~~LlrF~Ss~~~~~~SLdeYv~rmke~Qk~IYYltg~s~~~~~~SP~lE~~k~kG~EVL~ 508 (704)
+.-+-|..+-.+|-.|.+. ..+.+.-+.. .+.-.||.+|+..+.-+|+...-.++.+-.+-|..+=+.+
T Consensus 240 N~tKpiW~rnp~dit~eey-~eFYksl~nd----w~d~lav~hf~~eg~lefrail~vP~rap~~lF~~~kk~n------ 308 (656)
T KOG0019|consen 240 NNLKAIWTMNPKEVNEEEH-EEFYKSVSGD----WDDPLYVLHFKTDGPLSIRSIFYIPKRAPNSMFDMRKKKN------ 308 (656)
T ss_pred hccCcccccCchhhhHHHH-HHHHHhhccc----ccchhhHhhhccccceEEEEEEeccccCcchhhhhhhccC------
Confidence 4445555555555555432 2333322221 4556899999999999999998877766555555552222
Q ss_pred eccchhHHHhhccccccCCceeeccccccCcccchhhHHHHHHHHHHHHHhhcccceeEEEEEEccchhhhHHHHHhhhc
Q psy13233 509 LVEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEKMEALKTLQLYTKSLLRGLCLYVRRVFITDEFTDMLPKYLSFIQ 588 (704)
Q Consensus 509 l~dpIDe~~i~~l~~f~gkkf~~V~k~~l~l~~~ee~~e~~~~l~~~~k~~l~~~~~~V~~V~IS~rl~d~~P~~l~~~q 588 (704)
++.+||++|+|++.+.+.+|.|++|+.
T Consensus 309 -----------------------------------------------------~i~Ly~rrv~I~d~~~~lipe~l~fv~ 335 (656)
T KOG0019|consen 309 -----------------------------------------------------GIKLYARRVLITDDAGDLIPEWLRFVR 335 (656)
T ss_pred -----------------------------------------------------ceEEEEEEEecCchhHHHHHHHhchhe
Confidence 333689999999999999999999999
Q ss_pred ccccCCCccccccHHHHhhChHHHHHHHHHHHHHHHHhhccC--hHHHHHHHHHhhhhhccccCCChhhHHH-Hhhhhcc
Q psy13233 589 GIVDSDDLPLNVSRETLQQHKLLKVIRKKLIRKALDMFKKLD--PETYKKFWAEYSTNMKLGVIEDPANRSR-LAKLLMF 665 (704)
Q Consensus 589 ~v~d~~~~~~~~~r~ile~h~iI~~l~~~i~~~~~d~~~~l~--~e~~~~~~~~~~~~~k~g~~~d~~~~~~-~~~llrf 665 (704)
||+|+.++|+|++|++||+++|++.|++.++++++++|.+++ +|.|++||++||.+||+|+++|++|+.+ +++||||
T Consensus 336 gvVdSeDlPLNiSremlQ~~~i~k~~rk~l~~k~l~~~~e~a~d~e~Y~kFy~~f~~~lk~gi~e~s~~~~k~~a~lLry 415 (656)
T KOG0019|consen 336 GVVDSEDIPLNLSREMLQENAVLRKLRKVLPQKILEMFQDLAKDAEKYKKFFKNYGLFLKEGIVTASEQQVKEIAKLLRY 415 (656)
T ss_pred eccccccCccchhHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhcccchhhhhhhHHHHHhhh
Confidence 999999999999999999999999999999999999999975 5999999999999999999999999999 9999999
Q ss_pred cccCCC-CCcCHHHHHhhcCCCCCeEEEEEcCChhhhcc
Q psy13233 666 QSSSST-EPTSLSDYVKRMKPKQDHIYYIAGASRKESYK 703 (704)
Q Consensus 666 ~s~~~~-~~~sl~~y~~~m~~~q~~iyy~~~~~~~~~~~ 703 (704)
+||+|+ ++|||++||+||+++|++||||||+|++++.|
T Consensus 416 ~ss~s~~~~~Sl~dYv~rm~~~qk~iyyi~~~s~~~~~~ 454 (656)
T KOG0019|consen 416 ESSKSGEGATSLDDYVERMREGQKNIYYITAPNRQLAES 454 (656)
T ss_pred hccccccccccHHHHHHhhcccccceEEeccchhhhhhc
Confidence 999999 89999999999999999999999999988754
No 12
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.95 E-value=2.1e-28 Score=283.17 Aligned_cols=142 Identities=53% Similarity=0.903 Sum_probs=134.8
Q ss_pred cccceeEEEEEEccchhhhHHHHHhhhcccccCCCccccccHHHHhhChHHHHHHHHHHHHHHHHhhccC--hHHHHHHH
Q psy13233 561 RGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIRKALDMFKKLD--PETYKKFW 638 (704)
Q Consensus 561 ~~~~~~V~~V~IS~rl~d~~P~~l~~~q~v~d~~~~~~~~~r~ile~h~iI~~l~~~i~~~~~d~~~~l~--~e~~~~~~ 638 (704)
+++.+||++|+|++.+.+.+|.||+|++||+|+.++|+|++|++||++++++.|++.++++++++|++++ ++.|.+||
T Consensus 331 ~~i~LY~~rVfI~d~~~~llP~~l~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~i~~~i~~ki~~~l~~la~~~~~y~~f~ 410 (701)
T PTZ00272 331 NNIKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFDEVAENKEDYKQFY 410 (701)
T ss_pred CceEEEEeeEEEecchhhhhHHHHhheeEEeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 3456899999999999999999999999999999999999999999999999999999999999999975 48999999
Q ss_pred HHhhhhhccccCCChhhHHHHhhhhcccccCCC-CCcCHHHHHhhcCCCCCeEEEEEcCChhhhc
Q psy13233 639 AEYSTNMKLGVIEDPANRSRLAKLLMFQSSSST-EPTSLSDYVKRMKPKQDHIYYIAGASRKESY 702 (704)
Q Consensus 639 ~~~~~~~k~g~~~d~~~~~~~~~llrf~s~~~~-~~~sl~~y~~~m~~~q~~iyy~~~~~~~~~~ 702 (704)
..||.+||+|+++|..||.+|++||||+||.++ ++|||++||+|||++|+.|||++|+|+++..
T Consensus 411 ~~~g~~lK~G~~~D~~~~~~l~~Llrf~ss~~~~~~~sL~eYv~rmk~~Q~~IYY~~~~s~~~~~ 475 (701)
T PTZ00272 411 EQFGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDSKKKLE 475 (701)
T ss_pred HHHhhhhheeeccCHhHHHHHHHhhceeecCCCCceeeHHHHHHhhccCCceEEEEeCCCHHHHH
Confidence 999999999999999999999999999999865 8999999999999999999999999998654
No 13
>PTZ00130 heat shock protein 90; Provisional
Probab=99.95 E-value=5.3e-28 Score=280.49 Aligned_cols=142 Identities=49% Similarity=0.860 Sum_probs=133.8
Q ss_pred cccceeEEEEEEccchhhhHHHHHhhhcccccCCCccccccHHHHhhChHHHHHHHHHHHHHHHHhhccC----------
Q psy13233 561 RGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIRKALDMFKKLD---------- 630 (704)
Q Consensus 561 ~~~~~~V~~V~IS~rl~d~~P~~l~~~q~v~d~~~~~~~~~r~ile~h~iI~~l~~~i~~~~~d~~~~l~---------- 630 (704)
+++.+||++|+|++.+.+++|.||+|++||+|+.++|+|+||++||++++++.|++.++++++++|+.++
T Consensus 391 ~~ikLYvrrVfI~d~~~dLLP~wL~FVkGVVDSeDLPLNVSRE~LQ~n~~l~~Irk~l~kkil~~L~~l~~~~~~~~e~~ 470 (814)
T PTZ00130 391 NSIKLYVRRVLVADEFVEFLPRYMSFVKGVVDSDDLPLNVSREQLQQNKILKAVSKRIVRKILDTFRTLYKEGKKNKETL 470 (814)
T ss_pred CceEEEEeeEEeecchhhhhhHHHhhhEEEeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHHHHHHHhhccccchhc
Confidence 3455899999999999999999999999999999999999999999999999999999999999999543
Q ss_pred ----------------------hHHHHHHHHHhhhhhccccCCChhhHHHHhhhhcccccCCCCCcCHHHHHhhcCCCCC
Q psy13233 631 ----------------------PETYKKFWAEYSTNMKLGVIEDPANRSRLAKLLMFQSSSSTEPTSLSDYVKRMKPKQD 688 (704)
Q Consensus 631 ----------------------~e~~~~~~~~~~~~~k~g~~~d~~~~~~~~~llrf~s~~~~~~~sl~~y~~~m~~~q~ 688 (704)
++.|.+||..||.+||+|+++|..|+.+|++||||+||.+++++||++||+||+++|+
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~d~e~Y~kF~~~fg~~LK~Gv~eD~~nre~l~~LLrF~Ss~~~~~~SL~eYv~rMke~Qk 550 (814)
T PTZ00130 471 RAELAKETDEEKKKEIQKKINEPSTYKLIYKEYRKYLKTGCYEDDINRNKIVKLLLFKTMLHPKSISLDTYIENMKPDQK 550 (814)
T ss_pred ccccccccccccccccccccccHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhheeeeCCCCCccCHHHHHhhhccCCe
Confidence 3689999999999999999999999999999999999987789999999999999999
Q ss_pred eEEEEEcCChhhhc
Q psy13233 689 HIYYIAGASRKESY 702 (704)
Q Consensus 689 ~iyy~~~~~~~~~~ 702 (704)
.|||++|+++++..
T Consensus 551 ~IYY~t~~s~~~~~ 564 (814)
T PTZ00130 551 FIYYASGDSYEYLS 564 (814)
T ss_pred EEEEEeCCCHHHHh
Confidence 99999999988754
No 14
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.5e-27 Score=267.16 Aligned_cols=142 Identities=51% Similarity=0.892 Sum_probs=134.0
Q ss_pred cccceeEEEEEEccchhhhHHHHHhhhcccccCCCccccccHHHHhhChHHHHHHHHHHHHHHHHhhccC---hHHHHHH
Q psy13233 561 RGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIRKALDMFKKLD---PETYKKF 637 (704)
Q Consensus 561 ~~~~~~V~~V~IS~rl~d~~P~~l~~~q~v~d~~~~~~~~~r~ile~h~iI~~l~~~i~~~~~d~~~~l~---~e~~~~~ 637 (704)
+++.+||++|+||+.+.+.+|.|++|++||+|+.++|+|+||++||++++++.|++.++++++++|++|+ +|+|.+|
T Consensus 292 ~glkLYv~rVfI~Dd~~~llP~yl~Fv~GvIDS~DLpLNvSRE~LQ~n~~l~~Irk~l~kkvl~~L~~La~~~~e~y~~f 371 (623)
T COG0326 292 RGLKLYVNRVFIMDDAEDLLPNYLRFVRGVIDSEDLPLNVSREILQQNRILAAIRKALTKKVLSMLEKLAKDDPEKYRKF 371 (623)
T ss_pred CCcEEEEeeeEEeCChhhhhhHHHhhheeeeecCCCCcccCHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4556899999999999999999999999999999999999999999999999999999999999999986 4799999
Q ss_pred HHHhhhhhccccCCChhhHHHHhhhhccccc-CCC-CCcCHHHHHhhcCCCCCeEEEEEcCChhhhc
Q psy13233 638 WAEYSTNMKLGVIEDPANRSRLAKLLMFQSS-SST-EPTSLSDYVKRMKPKQDHIYYIAGASRKESY 702 (704)
Q Consensus 638 ~~~~~~~~k~g~~~d~~~~~~~~~llrf~s~-~~~-~~~sl~~y~~~m~~~q~~iyy~~~~~~~~~~ 702 (704)
|..||..||+|+.+|..|++.|+.||||.|| .++ +++||++||+|||++|+.|||++|+|.....
T Consensus 372 ~~~fg~~LKeG~~eD~~n~e~l~~lLrf~St~~~~~~~~sl~eYv~rmke~q~~IyY~tges~~~~~ 438 (623)
T COG0326 372 WKQFGLVLKEGLYEDFENKEKLLDLLRFRSTSDSGEKTVSLEEYVSRMKEGQKQIYYITGESYQAAK 438 (623)
T ss_pred HHHHHHHHHhhhhhhhhhHHHHHhhhEecccCCCccCcccHHHHHHhcccccceeEEeccccHHHHh
Confidence 9999999999999999999999999999995 434 8999999999999999999999999988763
No 15
>PRK05218 heat shock protein 90; Provisional
Probab=99.91 E-value=1.2e-24 Score=250.58 Aligned_cols=141 Identities=52% Similarity=0.885 Sum_probs=133.5
Q ss_pred cccceeEEEEEEccchhhhHHHHHhhhcccccCCCccccccHHHHhhChHHHHHHHHHHHHHHHHhhccC---hHHHHHH
Q psy13233 561 RGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIRKALDMFKKLD---PETYKKF 637 (704)
Q Consensus 561 ~~~~~~V~~V~IS~rl~d~~P~~l~~~q~v~d~~~~~~~~~r~ile~h~iI~~l~~~i~~~~~d~~~~l~---~e~~~~~ 637 (704)
+...+||++|.|++++.+.+|.|++|++||+|+.++|+|.+|++||++++++.|++.++++++++|.+++ ++.|.+|
T Consensus 284 ~~~~lyvn~v~I~d~~~~lLP~wl~Fv~GVVDs~dLplnvSRE~lq~~~~l~~i~~~l~~kv~~~l~~la~~d~~~y~~f 363 (613)
T PRK05218 284 GGLKLYVKRVFIMDDAEELLPEYLRFVKGVIDSEDLPLNVSREILQEDRVVKKIRKAITKKVLDELEKLAKNDREKYEKF 363 (613)
T ss_pred ccEEEEECcEEeeCchhhhchHHHhheEEEeecCCCCCccCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 3445899999999999999999999999999999999999999999999999999999999999999974 5999999
Q ss_pred HHHhhhhhccccCCChhhHHHHhhhhcccccCCCCCcCHHHHHhhcCCCCCeEEEEEcCChhhh
Q psy13233 638 WAEYSTNMKLGVIEDPANRSRLAKLLMFQSSSSTEPTSLSDYVKRMKPKQDHIYYIAGASRKES 701 (704)
Q Consensus 638 ~~~~~~~~k~g~~~d~~~~~~~~~llrf~s~~~~~~~sl~~y~~~m~~~q~~iyy~~~~~~~~~ 701 (704)
|..||.+||.|+++|..++.+|++||||+||+.++++||++|++||+++|+.|||++|.|+++.
T Consensus 364 ~~~~~~~lK~g~~~D~~~~~~~~~lL~f~ts~~~~~~sL~ey~~rm~~~q~~Iyy~~~~~~~~~ 427 (613)
T PRK05218 364 WKEFGPVLKEGLYEDFANREKLAKLLRFASTHEGKYVSLAEYVERMKEGQKKIYYITGDSREAA 427 (613)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHhhceeeecCCCCcccHHHHHHhCcCCCceEEEEeCCCHHHH
Confidence 9999999999999999999999999999999745899999999999999999999999988764
No 16
>PRK14083 HSP90 family protein; Provisional
Probab=99.87 E-value=2.3e-22 Score=230.61 Aligned_cols=133 Identities=22% Similarity=0.371 Sum_probs=124.1
Q ss_pred ccceeEEEEEEccchhhhHHHHHhhhcccccCCCccccccHHHHhhChHHHHHHHHHHHHHHHHhhcc---ChHHHHHHH
Q psy13233 562 GLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIRKALDMFKKL---DPETYKKFW 638 (704)
Q Consensus 562 ~~~~~V~~V~IS~rl~d~~P~~l~~~q~v~d~~~~~~~~~r~ile~h~iI~~l~~~i~~~~~d~~~~l---~~e~~~~~~ 638 (704)
+..+||++|+|++++.+.+|.|++|++||+|+.++|+|++|++||++++++.|++.++++++++|+++ +++.|.+||
T Consensus 265 ~v~LY~~rVfI~d~~~~lLP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~ir~~i~kki~~~L~~la~~d~e~y~~f~ 344 (601)
T PRK14083 265 KHRVYLKRMLLSEEAENLLPDWAFFVRCVVNTDELRPTASREALYEDDALAAVREELGEAIRKWLIGLATTDPERLRRLL 344 (601)
T ss_pred ceEEEeeeeEeecchhhhhHHHHHHheeeeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 34589999999999999999999999999999999999999999999999999999999999999997 469999999
Q ss_pred HHhhhhhccccCCChhhHHHHhhhhcccccCCCCCcCHHHHHhhcCCCCCeEEEEEcC-Chhh
Q psy13233 639 AEYSTNMKLGVIEDPANRSRLAKLLMFQSSSSTEPTSLSDYVKRMKPKQDHIYYIAGA-SRKE 700 (704)
Q Consensus 639 ~~~~~~~k~g~~~d~~~~~~~~~llrf~s~~~~~~~sl~~y~~~m~~~q~~iyy~~~~-~~~~ 700 (704)
..||.+||+|+++|..|+++|++||||+||. ..+||++|++|| +.|||++|. +..+
T Consensus 345 ~~~g~~lK~g~~~D~~~~~~l~~lL~f~ss~--~~~sL~eY~~r~----~~IyY~~~~~~~~~ 401 (601)
T PRK14083 345 AVHHLGVKALASHDDELLRLILPWLPFETTD--GRMTLAEIRRRH----GVIRYTSSVDEFRQ 401 (601)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhceeecCC--CCcCHHHHHHhC----CeEEEEcCHHHHHH
Confidence 9999999999999999999999999999997 369999999997 489999996 5443
No 17
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.65 E-value=3.8e-16 Score=148.01 Aligned_cols=101 Identities=35% Similarity=0.512 Sum_probs=76.0
Q ss_pred CCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEc-CCCcEEEEEeCCCCCCHHHHHHhhchhhccChh
Q psy13233 83 YRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKAD-QENKMLHIIDSGIGMTKADLVKNLGTIAKSGTA 161 (704)
Q Consensus 83 Ys~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d-~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~ 161 (704)
|+. +.+|+|||+||.||.... +.|.|..+ .....|.|.|||.||+.++|.. +++++.|.+.
T Consensus 1 y~~-~~al~ElI~Ns~DA~a~~----------------I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~-~~~~g~s~k~ 62 (137)
T PF13589_consen 1 YSP-EDALRELIDNSIDAGATN----------------IKISIDEDKKGERYIVIEDNGEGMSREDLES-FFRIGRSSKK 62 (137)
T ss_dssp -SC-THHHHHHHHHHHHHHHHH----------------EEEEEEEETTTTTEEEEEESSS---HHHHHH-HTTCHHTHHH
T ss_pred CcH-HHHHHHHHHHHHHccCCE----------------EEEEEEcCCCCCcEEEEEECCcCCCHHHHHH-hccccCCCCC
Confidence 666 899999999999998653 45555554 3458999999999999999998 7789988654
Q ss_pred hHHHhhhhhhcccccccccccccccc-eeeeeeecCEEEEEEEeCCC-CcEEEE
Q psy13233 162 EFLSQMSDKENIKHDLNDMIGQFGVG-FYSAFLVADKVLVTTKNNED-SQYIWE 213 (704)
Q Consensus 162 ~f~~~l~~~~~~~~d~~~~IGqFGIG-FySaFmVAdkV~V~Sk~~~d-~~~~We 213 (704)
.. .+ ...+|+||+| ++|+|++++++.|+|++.+. ..+.|.
T Consensus 63 ~~-----------~~-~~~~G~~G~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~ 104 (137)
T PF13589_consen 63 SE-----------KD-RQSIGRFGIGLKLAIFSLGDRVEVISKTNGESFTYTID 104 (137)
T ss_dssp HH-----------HH-GGGGGGGTSGCGGGGGGTEEEEEEEEESTTSSSEEEEE
T ss_pred ch-----------hh-hhcCCCcceEHHHHHHHhcCEEEEEEEECCCCcEEEEE
Confidence 21 11 4679999999 88999999999999999743 344443
No 18
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.35 E-value=6.6e-12 Score=134.50 Aligned_cols=161 Identities=20% Similarity=0.281 Sum_probs=105.9
Q ss_pred hcCCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCc-EEEEEeCCCCCCHHHHHHhhchhhcc
Q psy13233 80 NSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENK-MLHIIDSGIGMTKADLVKNLGTIAKS 158 (704)
Q Consensus 80 ~sLYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~-~L~I~DNGiGMT~~eL~~~LgtIa~S 158 (704)
.....++..+|+|||+||.||.. . .|.|.+..++. .|+|.|||.||+.+++...+...+.|
T Consensus 17 ~~~i~~~~~~l~eLi~Na~dA~a----------------~--~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts 78 (312)
T TIGR00585 17 GEVIERPASVVKELVENSLDAGA----------------T--RIDVEIEEGGLKLIEVSDNGSGIDKEDLPLACERHATS 78 (312)
T ss_pred cCchhhHHHHHHHHHHHHHHCCC----------------C--EEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhhCCCcC
Confidence 45567889999999999999942 2 35555444443 59999999999999998654444433
Q ss_pred ChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEe-C-CCCcEEEEecCCceEEEeCCCCCCCCCccEE
Q psy13233 159 GTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKN-N-EDSQYIWESDASSFSIVNDPRGDNLKRGTQI 236 (704)
Q Consensus 159 gt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~-~-~d~~~~Wes~gg~f~I~~~~~~~~~~~GT~I 236 (704)
-...+- .+ ......|.+|.|++|...+| +|+|+|++ . ++.++.|..+|+ .+... .....++||+|
T Consensus 79 k~~~~~-~~--------~~~~~~G~rG~al~si~~~s-~~~i~S~~~~~~~~~~~~~~~g~--~~~~~-~~~~~~~GTtV 145 (312)
T TIGR00585 79 KIQSFE-DL--------ERIETLGFRGEALASISSVS-RLTITTKTSAADGLAWQALLEGG--MIEEI-KPAPRPVGTTV 145 (312)
T ss_pred CCCChh-Hh--------hcccccCccchHHHHHHhhC-cEEEEEeecCCCcceEEEEECCC--cCccc-ccccCCCccEE
Confidence 222210 11 11456899999999999999 89999997 3 445677775544 22221 11344799999
Q ss_pred EEE-ec---cchhccCC-----HHHHHHHHHHhc---ccCCcceEEe
Q psy13233 237 SLE-LK---EEASDFLE-----VNTLKDLIKKYS---QFINFPIYIW 271 (704)
Q Consensus 237 ~L~-Lk---ed~~e~l~-----~~~lk~likkys---~fi~~PI~l~ 271 (704)
++. |- +....|+. ...++.++.+|+ ..+.|.++.+
T Consensus 146 ~v~~lf~n~p~r~~~~~~~~~~~~~i~~~l~~~al~~p~i~f~l~~~ 192 (312)
T TIGR00585 146 EVRDLFYNLPVRRKFLKSPKKEFRKILDLLNRYALIHPDVSFSLTHD 192 (312)
T ss_pred EEchhhccCchhhhhccCcHHHHHHHHHHHHHHhhcCCCeEEEEEEC
Confidence 997 10 11111222 356888999998 5556777664
No 19
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.16 E-value=7e-11 Score=129.52 Aligned_cols=133 Identities=24% Similarity=0.374 Sum_probs=95.8
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEE-cCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKA-DQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQ 166 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~-d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~ 166 (704)
..+||||.||.|||+.. +-.+++.|+|.. +.+-.++.|+|||+|++.+.+-+.||+...+++ |-.-
T Consensus 39 ~tv~ElV~NSLDA~eea-----------GILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSK--fh~~ 105 (538)
T COG1389 39 TTVHELVTNSLDACEEA-----------GILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSK--FHRN 105 (538)
T ss_pred HHHHHHHhcchhhHHhc-----------CCCCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhccch--hhhh
Confidence 57899999999999853 334666777764 355578999999999999999999999987765 2111
Q ss_pred hhhhhcccccccccccccccceeeeeee-----cCEEEEEEEeCC-CCcEEEE--ecC--CceEEEeC--CCCCCCCCcc
Q psy13233 167 MSDKENIKHDLNDMIGQFGVGFYSAFLV-----ADKVLVTTKNNE-DSQYIWE--SDA--SSFSIVND--PRGDNLKRGT 234 (704)
Q Consensus 167 l~~~~~~~~d~~~~IGqFGIGFySaFmV-----AdkV~V~Sk~~~-d~~~~We--s~g--g~f~I~~~--~~~~~~~~GT 234 (704)
.+.-||+|||.-+|.|. +.-|.|.|+..+ +..+..+ .|. ++-.|... .......|||
T Consensus 106 -----------~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT 174 (538)
T COG1389 106 -----------IQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGT 174 (538)
T ss_pred -----------hhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCce
Confidence 45569999999777665 567999998864 4555443 222 44444432 1223447999
Q ss_pred EEEEEeccch
Q psy13233 235 QISLELKEEA 244 (704)
Q Consensus 235 ~I~L~Lked~ 244 (704)
+|.|+++...
T Consensus 175 ~Vel~~~~~~ 184 (538)
T COG1389 175 RVELELKGVW 184 (538)
T ss_pred EEEEEecccc
Confidence 9999999874
No 20
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.02 E-value=1.6e-09 Score=123.33 Aligned_cols=152 Identities=22% Similarity=0.331 Sum_probs=95.9
Q ss_pred hhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEc---CCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhH
Q psy13233 87 EIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKAD---QENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEF 163 (704)
Q Consensus 87 ~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d---~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f 163 (704)
...|+|||+||.||++.. +..+.+.|.+... .+...|+|.|||+||+.+++...|+....+++ |
T Consensus 38 ~qVLkNLIeNAIDa~~~~-----------gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK--~ 104 (535)
T PRK04184 38 YTTVKELVDNSLDACEEA-----------GILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSK--F 104 (535)
T ss_pred HHHHHHHHHHHHHHhhhc-----------CCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhcccc--c
Confidence 456899999999998632 0112445555542 22357999999999999999987776533322 1
Q ss_pred HHhhhhhhcccccccccccccccceeeeeeecC-----EEEEEEEeCCCC-cEEEEe--cC--CceEEEe-CCCCCCCCC
Q psy13233 164 LSQMSDKENIKHDLNDMIGQFGVGFYSAFLVAD-----KVLVTTKNNEDS-QYIWES--DA--SSFSIVN-DPRGDNLKR 232 (704)
Q Consensus 164 ~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAd-----kV~V~Sk~~~d~-~~~Wes--~g--g~f~I~~-~~~~~~~~~ 232 (704)
. .. ....|++|+|+.++.+++. .+.|.|+..++. .+.++. +. +.-.+.. ........+
T Consensus 105 ----~------~~-~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~i~~~~~~~~~~~~ 173 (535)
T PRK04184 105 ----H------NL-RQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPIILEREEVDWDRWH 173 (535)
T ss_pred ----c------cc-ccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCeeccccccCCCCCC
Confidence 0 00 2345999999999988865 589999876544 444442 11 1111111 111123479
Q ss_pred ccEEEEEeccchhccCCHHHHHHHHHHhcccC
Q psy13233 233 GTQISLELKEEASDFLEVNTLKDLIKKYSQFI 264 (704)
Q Consensus 233 GT~I~L~Lked~~e~l~~~~lk~likkys~fi 264 (704)
||+|.+.+..+.. .....+.+++++++-.-
T Consensus 174 GT~V~V~l~~~~~--~~~~~I~e~i~r~Al~n 203 (535)
T PRK04184 174 GTRVELEIEGDWY--RAKQRIYEYLKRTAIVN 203 (535)
T ss_pred CEEEEEEECCcCh--hhHHHHHHHHHHHHHhC
Confidence 9999999876542 12567778887776544
No 21
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=98.93 E-value=3.3e-09 Score=123.64 Aligned_cols=158 Identities=20% Similarity=0.317 Sum_probs=101.6
Q ss_pred HHHH-HhcCCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCC-cEEEEEeCCCCCCHHHHHHhh
Q psy13233 75 MKLI-INSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQEN-KMLHIIDSGIGMTKADLVKNL 152 (704)
Q Consensus 75 l~LL-~~sLYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~-~~L~I~DNGiGMT~~eL~~~L 152 (704)
...| +...-.++...++|||+||.||.+ . .|.|.+..++ ..|+|.|||.||+.+++...+
T Consensus 11 ~~~IaAgevI~~~~svvkElveNsiDAga----------------t--~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~ 72 (617)
T PRK00095 11 ANQIAAGEVVERPASVVKELVENALDAGA----------------T--RIDIEIEEGGLKLIRVRDNGCGISKEDLALAL 72 (617)
T ss_pred HHHhcCcCcccCHHHHHHHHHHHHHhCCC----------------C--EEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHh
Confidence 3444 344557889999999999999952 2 3555554333 579999999999999999777
Q ss_pred chhhccChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCC-CCcEEEEecCCce-EEEeCCCCCCC
Q psy13233 153 GTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNE-DSQYIWESDASSF-SIVNDPRGDNL 230 (704)
Q Consensus 153 gtIa~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~-d~~~~Wes~gg~f-~I~~~~~~~~~ 230 (704)
...+.|.-..+ +.+. ...-.|..|.|+.|.-.|+ +|+|+|++.+ ..++.+...+|.. .+.+ ...
T Consensus 73 ~~~~tsKi~~~-~dl~--------~~~t~GfrGeAL~sI~~vs-~l~i~s~~~~~~~~~~~~~~~G~~~~~~~----~~~ 138 (617)
T PRK00095 73 ARHATSKIASL-DDLE--------AIRTLGFRGEALPSIASVS-RLTLTSRTADAAEGWQIVYEGGEIVEVKP----AAH 138 (617)
T ss_pred hccCCCCCCCh-hHhh--------ccccCCcchhHHHhhhhce-EEEEEEecCCCCceEEEEecCCcCcceec----ccC
Confidence 66665532221 1110 1245699999988887776 8999999864 3455555444422 1211 224
Q ss_pred CCccEEEEE-e---ccchhccCC-----HHHHHHHHHHhcccC
Q psy13233 231 KRGTQISLE-L---KEEASDFLE-----VNTLKDLIKKYSQFI 264 (704)
Q Consensus 231 ~~GT~I~L~-L---ked~~e~l~-----~~~lk~likkys~fi 264 (704)
.+||+|++. | -+....|+. ...+.++++.|+-.-
T Consensus 139 ~~GT~V~v~~LF~n~P~Rrkflk~~~~e~~~i~~~v~~~Al~~ 181 (617)
T PRK00095 139 PVGTTIEVRDLFFNTPARRKFLKSEKTELGHIDDVVNRLALAH 181 (617)
T ss_pred CCCCEEEechhhccCcHHHHhccCcHHHHHHHHHHHHHHhhcC
Confidence 799999995 1 122223432 245788888877553
No 22
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=98.93 E-value=1.4e-09 Score=126.92 Aligned_cols=147 Identities=22% Similarity=0.309 Sum_probs=97.6
Q ss_pred CCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcE-EEEEeCCCCCCHHHHHHhhchhhccCh
Q psy13233 82 LYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKM-LHIIDSGIGMTKADLVKNLGTIAKSGT 160 (704)
Q Consensus 82 LYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~-L~I~DNGiGMT~~eL~~~LgtIa~Sgt 160 (704)
.-..|...+||||.||.||.+ -+|+|.++..+.. |.|+|||+||+++||.-.+...|.|--
T Consensus 20 VIerPaSVVKELVENSlDAGA------------------t~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSKI 81 (638)
T COG0323 20 VIERPASVVKELVENSLDAGA------------------TRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLALLRHATSKI 81 (638)
T ss_pred eeecHHHHHHHHHhcccccCC------------------CEEEEEEccCCccEEEEEECCCCCCHHHHHHHHhhhccccC
Confidence 345788999999999999964 3588888777755 999999999999999999999998854
Q ss_pred hhHHHhhhhhhcccccccccccccccce--eeeeeecCEEEEEEEeCC-CCcEEEEecCCceEEEeCCCCCCCCCccEEE
Q psy13233 161 AEFLSQMSDKENIKHDLNDMIGQFGVGF--YSAFLVADKVLVTTKNNE-DSQYIWESDASSFSIVNDPRGDNLKRGTQIS 237 (704)
Q Consensus 161 ~~f~~~l~~~~~~~~d~~~~IGqFGIGF--ySaFmVAdkV~V~Sk~~~-d~~~~Wes~gg~f~I~~~~~~~~~~~GT~I~ 237 (704)
+.+ .| ..-|-.||.-- +++..-..+++|+||..+ ..++.|...||.-.+...+ ...+.||+|.
T Consensus 82 ~~~-----------~D-L~~I~TlGFRGEAL~SIasVsrlti~Srt~~~~~~~~~~~~g~~~~~~~~p--~a~~~GTtVe 147 (638)
T COG0323 82 ASL-----------ED-LFRIRTLGFRGEALASIASVSRLTITSRTAEASEGTQIYAEGGGMEVTVKP--AAHPVGTTVE 147 (638)
T ss_pred Cch-----------hH-HHHhhccCccHHHHHHHHhhheeEEEeecCCcCceEEEEecCCcccccccC--CCCCCCCEEE
Confidence 332 12 22233333322 344444578999999654 4566676666432221111 2345699999
Q ss_pred EE------------eccchhccCCHHHHHHHHHHhccc
Q psy13233 238 LE------------LKEEASDFLEVNTLKDLIKKYSQF 263 (704)
Q Consensus 238 L~------------Lked~~e~l~~~~lk~likkys~f 263 (704)
+. ++.+.. +-..+..+|++|+=.
T Consensus 148 V~dLF~NtPaRrKflks~~~---E~~~i~~vv~r~ALa 182 (638)
T COG0323 148 VRDLFYNTPARRKFLKSEKT---EFGHITELINRYALA 182 (638)
T ss_pred ehHhhccChHHHHhhcccHH---HHHHHHHHHHHHHhc
Confidence 75 222222 335678888888754
No 23
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.86 E-value=1.3e-08 Score=115.00 Aligned_cols=175 Identities=18% Similarity=0.272 Sum_probs=105.0
Q ss_pred HhhhccccchHhhHHHHHHHHHhcCCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCC-CcEEEE
Q psy13233 58 LRKKAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQE-NKMLHI 136 (704)
Q Consensus 58 ~~~~~e~~~Fqaev~~Ll~LL~~sLYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~-~~~L~I 136 (704)
+++..+-..|..+...|. ..++|||.||.||+... +..+.+.|.+..... ...|+|
T Consensus 13 F~kN~~~~Gf~~~~~~L~------------~VlkELVeNAIDA~~~~-----------g~~p~I~V~i~~~g~~~~~I~V 69 (488)
T TIGR01052 13 FRKNKHMLGYSGKIRSLT------------TVIHELVTNSLDACEEA-----------GILPDIKVEIEKIGKDHYKVTV 69 (488)
T ss_pred HHhCCccccccCCHHHHH------------HHHHHHHHHHHHHhhcc-----------CCCceEEEEEEECCCceEEEEE
Confidence 455555556666654442 46799999999998531 011233444433222 237999
Q ss_pred EeCCCCCCHHHHHHhhchhhccChhhHHHhhhhhhcccccccccccccccceeeeeeecC-----EEEEEEEeCCCC-cE
Q psy13233 137 IDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVAD-----KVLVTTKNNEDS-QY 210 (704)
Q Consensus 137 ~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAd-----kV~V~Sk~~~d~-~~ 210 (704)
.|||.||+.+++...|+....+++.. .. ....|++|+|+.++.+++. .+.|+|+..+.. ++
T Consensus 70 ~DNG~GIp~edl~~iF~rf~~tsK~~------------~~-~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~ 136 (488)
T TIGR01052 70 EDNGPGIPEEYIPKVFGKMLAGSKFH------------RI-IQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVY 136 (488)
T ss_pred EECCCCCCHHHHHhhhhhccccCccc------------cc-cccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEE
Confidence 99999999999998877654433210 01 3345999999999988876 499999986432 34
Q ss_pred EEEe------cCCceEEEeCCCCCCCCCccEEEEEeccchhccCCHHHHHHHHHHhcccCC-cceEE
Q psy13233 211 IWES------DASSFSIVNDPRGDNLKRGTQISLELKEEASDFLEVNTLKDLIKKYSQFIN-FPIYI 270 (704)
Q Consensus 211 ~Wes------~gg~f~I~~~~~~~~~~~GT~I~L~Lked~~e~l~~~~lk~likkys~fi~-~PI~l 270 (704)
..+. ++|.. +...+.+....+||+|++........+ ....+.++++.++=.-| .-|.+
T Consensus 137 ~~~~~id~~~n~G~i-~~~~~~~~~~~~GT~V~v~f~~~~~r~-~k~~i~e~l~~~Al~nP~~~i~l 201 (488)
T TIGR01052 137 KMKLKIDVQKNEGEI-VEKGEWNKPGWRGTRIELEFKGVSYRR-SKQGVYEYLRRTAVANPHAKIVL 201 (488)
T ss_pred EEEEEecccccCCee-cceeecCCCCCCceEEEEEECCceeec-cHHHHHHHHHHHHhhCCCeEEEE
Confidence 4443 12321 111111112258999999865543221 34678888887765433 33444
No 24
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.70 E-value=4.3e-08 Score=114.55 Aligned_cols=147 Identities=24% Similarity=0.357 Sum_probs=92.5
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQM 167 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l 167 (704)
..|+|||.||.||+..- +..+.+.|.|......-.|+|.|||.||+.+++...|...+.+++ |
T Consensus 49 tVLkNLIeNALDAs~~~-----------gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSK--f---- 111 (795)
T PRK14868 49 TAVKEAVDNALDATEEA-----------GILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSR--F---- 111 (795)
T ss_pred HHHHHHHHHHHHhCccc-----------CCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhccccc--c----
Confidence 56789999999997420 001233444433322247999999999999999988877765432 1
Q ss_pred hhhhcccccccccccccccceeeeeeecC-----EEEEEEEeCCC-CcEEEE--ecC--CceEE--EeCCCCCCCCCccE
Q psy13233 168 SDKENIKHDLNDMIGQFGVGFYSAFLVAD-----KVLVTTKNNED-SQYIWE--SDA--SSFSI--VNDPRGDNLKRGTQ 235 (704)
Q Consensus 168 ~~~~~~~~d~~~~IGqFGIGFySaFmVAd-----kV~V~Sk~~~d-~~~~We--s~g--g~f~I--~~~~~~~~~~~GT~ 235 (704)
... ..-.|+.|+|+-++.+++. .+.|+|+..+. .++.|+ .++ +.-.| ... ......+||+
T Consensus 112 ~~~-------~~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~-~~~~~~~GT~ 183 (795)
T PRK14868 112 HAR-------EQSRGQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEET-TTWDRPHGTR 183 (795)
T ss_pred ccc-------ccCCCCCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceeccee-cccCCCCceE
Confidence 100 1235899999999988875 49999987643 455454 333 22222 111 1123579999
Q ss_pred EEEEeccchhccCCHHHHHHHHHHhcc
Q psy13233 236 ISLELKEEASDFLEVNTLKDLIKKYSQ 262 (704)
Q Consensus 236 I~L~Lked~~e~l~~~~lk~likkys~ 262 (704)
|.+.|... |.-..++.++|++++=
T Consensus 184 IeV~Lf~N---~pAR~kI~eyl~r~Al 207 (795)
T PRK14868 184 IELEMEAN---MRARQQLHDYIKHTAV 207 (795)
T ss_pred EEEEEEcc---CchhhhHHHHHHHHHh
Confidence 99997543 3334556677766553
No 25
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.40 E-value=3.4e-07 Score=82.28 Aligned_cols=81 Identities=25% Similarity=0.419 Sum_probs=59.3
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQM 167 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l 167 (704)
..|.|||+||.++... ...+.|.+..+.+.-.|+|.|||.||+.+++...+.....+.
T Consensus 8 ~il~~ll~Na~~~~~~--------------~~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~-------- 65 (111)
T PF02518_consen 8 QILSELLDNAIKHSPE--------------GGKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTSD-------- 65 (111)
T ss_dssp HHHHHHHHHHHHHHHH--------------TSEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHSS--------
T ss_pred HHHHHHHHHHHHHhcC--------------CCEEEEEEEEecCeEEEEEEeccccccccccccchhhccccc--------
Confidence 5789999999999753 134566666666677899999999999999986553222211
Q ss_pred hhhhcccccccccccccccceeeeeeecCEE
Q psy13233 168 SDKENIKHDLNDMIGQFGVGFYSAFLVADKV 198 (704)
Q Consensus 168 ~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV 198 (704)
.+ ....+.+|+|++.+..++++.
T Consensus 66 -------~~-~~~~~g~GlGL~~~~~~~~~~ 88 (111)
T PF02518_consen 66 -------KS-ETSISGHGLGLYIVKQIAERH 88 (111)
T ss_dssp -------SS-SGGSSSSSHHHHHHHHHHHHT
T ss_pred -------cc-ccccCCCChHHHHHHHHHHHC
Confidence 11 345677999999998888764
No 26
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.31 E-value=1.2e-06 Score=102.66 Aligned_cols=161 Identities=16% Similarity=0.183 Sum_probs=99.2
Q ss_pred ChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHH--------hhchhhc
Q psy13233 86 KEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVK--------NLGTIAK 157 (704)
Q Consensus 86 ~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~--------~LgtIa~ 157 (704)
....++|||-||.|++.. +.. -.|.|.++.+ +.|+|.|||.||+.+++.. .|+++-.
T Consensus 38 l~~lv~EivdNaiDe~~a------------g~a--~~I~V~i~~d-g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lha 102 (631)
T PRK05559 38 LHHLVQEVIDNSVDEALA------------GHG--KRIEVTLHAD-GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHA 102 (631)
T ss_pred hhhhhhhhhccccchhhc------------CCC--CEEEEEEeCC-CcEEEEEcCCCCCcccccccCCcchheeeeeccc
Confidence 356889999999999631 112 3466666654 4899999999999988876 5665433
Q ss_pred cChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCC-cEEEEecC-CceEEEeCCCCCCCCCccE
Q psy13233 158 SGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDS-QYIWESDA-SSFSIVNDPRGDNLKRGTQ 235 (704)
Q Consensus 158 Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~-~~~Wes~g-g~f~I~~~~~~~~~~~GT~ 235 (704)
+|+ |-. . .. ...-|..|+|.-++=.++.+++|+|++.+.. ...|+ +| ..-.+..........+||+
T Consensus 103 gsK--f~~----~----~y-k~SgGl~GvGls~vNalS~~l~V~s~r~g~~~~~~f~-~G~~~~~l~~~~~~~~~~~GT~ 170 (631)
T PRK05559 103 GGK--FSN----K----AY-KFSGGLHGVGVSVVNALSSRLEVEVKRDGKVYRQRFE-GGDPVGPLEVVGTAGKRKTGTR 170 (631)
T ss_pred cCc--cCC----c----cc-cccCcccccchhhhhhheeeEEEEEEeCCeEEEEEEE-CCcCccCccccccccCCCCCcE
Confidence 332 210 0 11 2346999999999999999999999975422 23343 23 1111111111111479999
Q ss_pred EEEEeccch--hccCCHHHHHHHHHHhcccC-CcceEEecc
Q psy13233 236 ISLELKEEA--SDFLEVNTLKDLIKKYSQFI-NFPIYIWSS 273 (704)
Q Consensus 236 I~L~Lked~--~e~l~~~~lk~likkys~fi-~~PI~l~~~ 273 (704)
|+......- ..-++.+.|.+.++.++=.. ..-|.++..
T Consensus 171 V~f~PD~~iF~~~~~~~~~i~~~l~~~A~lnpgl~i~l~d~ 211 (631)
T PRK05559 171 VRFWPDPKIFDSPKFSPERLKERLRSKAFLLPGLTITLNDE 211 (631)
T ss_pred EEEEECHHHcCCcccCHHHHHHHHHHHHhhCCCeEEEEEeC
Confidence 999653321 11245677888888776433 245555543
No 27
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.31 E-value=2.5e-06 Score=99.55 Aligned_cols=147 Identities=18% Similarity=0.281 Sum_probs=85.3
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCC-CcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQE-NKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQ 166 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~-~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~ 166 (704)
..++|||.||.||+... +..+.+.|.+..... .-.|+|.|||.||+.+++...|+....+++ |
T Consensus 39 ~VVkELVeNAIDA~~~~-----------g~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK--~--- 102 (659)
T PRK14867 39 TIIHELVTNSLDACEEA-----------EILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSK--M--- 102 (659)
T ss_pred HHHHHHHHHHHHHhhcc-----------CCCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccCc--c---
Confidence 46799999999998521 011234444443221 235999999999999999988776332211 1
Q ss_pred hhhhhcccccccccccccccceeeeeeecCE-----EEEEEEeCCCCcE--EEE--e--cCCceEEEeCCCCCCCCCccE
Q psy13233 167 MSDKENIKHDLNDMIGQFGVGFYSAFLVADK-----VLVTTKNNEDSQY--IWE--S--DASSFSIVNDPRGDNLKRGTQ 235 (704)
Q Consensus 167 l~~~~~~~~d~~~~IGqFGIGFySaFmVAdk-----V~V~Sk~~~d~~~--~We--s--~gg~f~I~~~~~~~~~~~GT~ 235 (704)
.. ....-|+.|+|+.++-+++.. +.|.|+..++..+ .|. . ++|...-... .....+||+
T Consensus 103 -~~-------~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i~~n~G~I~~~~~--~~~~~~GT~ 172 (659)
T PRK14867 103 -HR-------LIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSVEKNEGDIVSHKV--REGFWRGTR 172 (659)
T ss_pred -cc-------eeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEecccCCeeccccc--CCCCCCCcE
Confidence 00 023458999999888766544 6888886544322 222 2 2233221111 123479999
Q ss_pred EEEEeccchhccCC-HHHHHHHHHHhcc
Q psy13233 236 ISLELKEEASDFLE-VNTLKDLIKKYSQ 262 (704)
Q Consensus 236 I~L~Lked~~e~l~-~~~lk~likkys~ 262 (704)
|.+.+++-. |-. +..+.+++++++=
T Consensus 173 Ie~~V~dLF--ynR~E~~i~e~l~r~AL 198 (659)
T PRK14867 173 VEGEFKEVT--YNRREQGPFEYLRRISL 198 (659)
T ss_pred EEEEEeece--echhhHHHHHHHHHHHH
Confidence 997665421 111 2236666666653
No 28
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.07 E-value=1.1e-05 Score=94.63 Aligned_cols=161 Identities=19% Similarity=0.239 Sum_probs=97.1
Q ss_pred CChhhHHHhHHhHHH-HHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHH--------HHHhhchh
Q psy13233 85 NKEIFLRELISNASD-ALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKAD--------LVKNLGTI 155 (704)
Q Consensus 85 ~~~ifLRELIqNA~D-A~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~e--------L~~~LgtI 155 (704)
++...+.|||.||.| |++ +... .|.|.++.+ +.|+|.|||.||+.++ +.-.|++.
T Consensus 30 ~~~~lv~ElvdNsiDE~~a-------------g~a~--~I~V~i~~d-~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~l 93 (625)
T TIGR01055 30 RPNHLVQEVIDNSVDEALA-------------GFAS--IIMVILHQD-QSIEVFDNGRGMPVDIHPKEGVSAVEVILTTL 93 (625)
T ss_pred Ccceeehhhhhcccchhhc-------------CCCC--EEEEEEeCC-CeEEEEecCCccCcccccccCCcHHHHhhhcc
Confidence 346799999999999 211 1122 466666655 7899999999999888 55555444
Q ss_pred hccChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCce--EEEeCCCCCCCCCc
Q psy13233 156 AKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSF--SIVNDPRGDNLKRG 233 (704)
Q Consensus 156 a~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f--~I~~~~~~~~~~~G 233 (704)
-.+|+ | ... .- .-.-|.-|+|.-|+=.++.+++|.|++.+.. |.+...+|.- .+..........+|
T Consensus 94 hagsK--~----~~~----~~-~~SgG~~GvGls~vnalS~~l~v~~~r~g~~-~~~~~~~G~~~~~~~~i~~~~~~~~G 161 (625)
T TIGR01055 94 HAGGK--F----SNK----NY-HFSGGLHGVGISVVNALSKRVKIKVYRQGKL-YSIAFENGAKVTDLISAGTCGKRLTG 161 (625)
T ss_pred cccCC--C----CCC----cc-eecCCCcchhHHHHHHhcCeEEEEEEECCeE-EEEEEECCeEccccccccccCCCCCC
Confidence 33332 2 111 11 2346999999999999999999999975432 4333333321 11111011123599
Q ss_pred cEEEEEeccchh--ccCCHHHHHHHHHHhcccC-CcceEEecc
Q psy13233 234 TQISLELKEEAS--DFLEVNTLKDLIKKYSQFI-NFPIYIWSS 273 (704)
Q Consensus 234 T~I~L~Lked~~--e~l~~~~lk~likkys~fi-~~PI~l~~~ 273 (704)
|+|+........ .-.+..+|.+.++.++=.- ..-|.++.+
T Consensus 162 T~V~F~PD~~~F~~~~~e~~~i~~~l~~lA~lnpgi~~~l~de 204 (625)
T TIGR01055 162 TSVHFTPDPEIFDSLHFSVSRLYHILRAKAVLCRGVEIEFEDE 204 (625)
T ss_pred eEEEEEECHHHCCCCccCHHHHHHHHHHHHhhCCCcEEEEeec
Confidence 999985433211 1134467778887765443 356666543
No 29
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.05 E-value=7.5e-06 Score=95.46 Aligned_cols=154 Identities=19% Similarity=0.263 Sum_probs=91.2
Q ss_pred hHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHH-------HhhchhhccChh
Q psy13233 89 FLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLV-------KNLGTIAKSGTA 161 (704)
Q Consensus 89 fLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~-------~~LgtIa~Sgt~ 161 (704)
.++|||.||+||... +. --.|.|.++.++ .|+|.|||.||+.+... +.+.++...|.+
T Consensus 5 ~v~ElvdNAiD~~~~------------g~--at~I~V~i~~~g-~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~k 69 (594)
T smart00433 5 LVDEIVDNAADEALA------------GY--MDTIKVTIDKDN-SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGK 69 (594)
T ss_pred EEeeehhcccchhcc------------CC--CCEEEEEEeCCC-eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCC
Confidence 578999999999631 11 234677676554 99999999999843211 011122222211
Q ss_pred hHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCC-cEEEEecC--Cc-eEEEeCCCCCCCCCccEEE
Q psy13233 162 EFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDS-QYIWESDA--SS-FSIVNDPRGDNLKRGTQIS 237 (704)
Q Consensus 162 ~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~-~~~Wes~g--g~-f~I~~~~~~~~~~~GT~I~ 237 (704)
| .. ....-.-|..|+|..|+=.++.+++|+|+..+.. ...|+.+| .. ..+.. ....+||+|+
T Consensus 70 -f----d~-----~~~k~s~G~~G~Gls~vnalS~~l~v~~~~~g~~~~~~~~~~G~~~~~~~~~~----~~~~~GT~V~ 135 (594)
T smart00433 70 -F----DD-----DAYKVSGGLHGVGASVVNALSTEFEVEVARDGKEYKQSFSNNGKPLSEPKIIG----DTKKDGTKVT 135 (594)
T ss_pred -C----CC-----CCccccCCcccchHHHHHHhcCceEEEEEeCCcEEEEEEeCCCeECccceecC----CCCCCCcEEE
Confidence 1 00 0112356999999999999999999999986322 22343223 11 11221 2347999999
Q ss_pred EEeccchhccCC-----HHHHHHHHHHhcccC-CcceEEecc
Q psy13233 238 LELKEEASDFLE-----VNTLKDLIKKYSQFI-NFPIYIWSS 273 (704)
Q Consensus 238 L~Lked~~e~l~-----~~~lk~likkys~fi-~~PI~l~~~ 273 (704)
. .++..-|.. ...|.+.++.++-.. ..-|.++..
T Consensus 136 F--~Pd~~~F~~~~~~~~~~i~~rl~~~A~l~pgl~i~l~de 175 (594)
T smart00433 136 F--KPDLEIFGMTTDDDFELLKRRLRELAFLNKGVKITLNDE 175 (594)
T ss_pred E--EECHHHhCCcccchHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 5 455555543 366777787776333 245555543
No 30
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.01 E-value=2.1e-05 Score=93.58 Aligned_cols=155 Identities=17% Similarity=0.251 Sum_probs=93.1
Q ss_pred hhhHHHhHHhHHH-HHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHH----------HHHHhhchh
Q psy13233 87 EIFLRELISNASD-ALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKA----------DLVKNLGTI 155 (704)
Q Consensus 87 ~ifLRELIqNA~D-A~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~----------eL~~~LgtI 155 (704)
...++|||-||.| |++ +... .|+|.++.+ +.|+|.|||.||+.+ |++ |+..
T Consensus 39 hhlv~EivdNaiDE~~A-------------G~a~--~I~V~i~~d-gsIsV~DnGrGIPvd~h~~~g~~~~Elv--lt~l 100 (756)
T PRK14939 39 HHMVYEVVDNAIDEALA-------------GHCD--DITVTIHAD-GSVSVSDNGRGIPTDIHPEEGVSAAEVI--MTVL 100 (756)
T ss_pred hhhhhHhhccccccccc-------------CCCC--EEEEEEcCC-CeEEEEEcCCcccCCcccccCCchhhhe--eeee
Confidence 4689999999999 221 1122 466666654 489999999999987 554 3322
Q ss_pred hccChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCceEEEeC-CCCCCCCCcc
Q psy13233 156 AKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVND-PRGDNLKRGT 234 (704)
Q Consensus 156 a~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f~I~~~-~~~~~~~~GT 234 (704)
-.+|+ | ... .- .-.-|.-|+|.-++=.++.+++|+|++.+. .|......|.. +.+. .-+....+||
T Consensus 101 hAggK--f----d~~----~y-kvSgGlhGvG~svvNAlS~~l~v~v~r~gk-~~~q~f~~G~~-~~~l~~~g~~~~~GT 167 (756)
T PRK14939 101 HAGGK--F----DQN----SY-KVSGGLHGVGVSVVNALSEWLELTIRRDGK-IHEQEFEHGVP-VAPLKVVGETDKTGT 167 (756)
T ss_pred cccCC--C----CCC----cc-cccCCccCccceEeehccCeEEEEEEeCCe-EEEEEEecCcc-ccCccccCCcCCCCc
Confidence 22222 2 111 11 114599999999999999999999997543 23333222221 1111 1122357999
Q ss_pred EEEEEeccchh--ccCCHHHHHHHHHHhcccCC--cceEEecc
Q psy13233 235 QISLELKEEAS--DFLEVNTLKDLIKKYSQFIN--FPIYIWSS 273 (704)
Q Consensus 235 ~I~L~Lked~~--e~l~~~~lk~likkys~fi~--~PI~l~~~ 273 (704)
+|+......-. .-.+.+.|...++.++ |++ .-|.++.+
T Consensus 168 ~V~F~PD~~iF~~~~~~~~~i~~rl~elA-~lnpgl~i~l~de 209 (756)
T PRK14939 168 EVRFWPSPEIFENTEFDYDILAKRLRELA-FLNSGVRIRLKDE 209 (756)
T ss_pred EEEEEECHHHcCCcccCHHHHHHHHHHHh-hcCCCCEEEEecc
Confidence 99985433211 1245677888887776 454 45555543
No 31
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=97.98 E-value=1.7e-05 Score=93.50 Aligned_cols=158 Identities=16% Similarity=0.144 Sum_probs=90.4
Q ss_pred hhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHH-------HhhchhhccC
Q psy13233 87 EIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLV-------KNLGTIAKSG 159 (704)
Q Consensus 87 ~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~-------~~LgtIa~Sg 159 (704)
...++|||-||.|.... +... .|.|.++.+ +.|+|.|||.||+.+--. +.+.++..+|
T Consensus 32 ~~vv~Elv~NaiDe~~a------------g~a~--~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag 96 (654)
T TIGR01059 32 HHLVYEVVDNSIDEAMA------------GYCD--TINVTINDD-GSVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAG 96 (654)
T ss_pred HhhhHHhhhcccccccc------------CCCC--EEEEEEeCC-CcEEEEEeCCCcCccccCcCCCCchHHheeeeccc
Confidence 46788999999994210 1122 466666644 469999999999975100 0111222222
Q ss_pred hhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCceEEEeCCCCCCCCCccEEEEE
Q psy13233 160 TAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQISLE 239 (704)
Q Consensus 160 t~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f~I~~~~~~~~~~~GT~I~L~ 239 (704)
.+ |- .. .. ....|..|+|..|+=.++.+++|+|++.+. .|.....+|.........+....+||+|+..
T Consensus 97 ~k-f~----~~----~~-k~s~G~~G~gl~~inalS~~l~v~~~~~g~-~~~~~~~~G~~~~~l~~~~~~~~~GT~V~F~ 165 (654)
T TIGR01059 97 GK-FD----KD----SY-KVSGGLHGVGVSVVNALSEWLEVTVFRDGK-IYRQEFERGIPLGPLEVVGETKKTGTTVRFW 165 (654)
T ss_pred Cc-cC----CC----cc-eecCCccchhHHHHHHhcCeEEEEEEECCe-EEEEEEeCCCcccCceeccCCCCCCcEEEEE
Confidence 11 20 00 11 235699999999999999999999997543 2333322332111000012345799999955
Q ss_pred eccchhccC----CHHHHHHHHHHhcccC-CcceEEec
Q psy13233 240 LKEEASDFL----EVNTLKDLIKKYSQFI-NFPIYIWS 272 (704)
Q Consensus 240 Lked~~e~l----~~~~lk~likkys~fi-~~PI~l~~ 272 (704)
..+ .-|+ +...|.+.++.++-.- ..-|.++.
T Consensus 166 pdp--~~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l~~ 201 (654)
T TIGR01059 166 PDP--EIFETTEFDFDILAKRLRELAFLNSGVKISLED 201 (654)
T ss_pred ECh--HHhCCcccCHHHHHHHHHHhhccCCCeEEEEEe
Confidence 333 2343 5677888888887332 24455543
No 32
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=97.92 E-value=3.2e-05 Score=90.96 Aligned_cols=157 Identities=17% Similarity=0.222 Sum_probs=91.4
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHH-------HhhchhhccCh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLV-------KNLGTIAKSGT 160 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~-------~~LgtIa~Sgt 160 (704)
..++|||-||.|.... +.. -.|.|.++.+ +.|+|.|||.||+.+.-. +.+.++..+|.
T Consensus 40 ~~v~ElvdNaiDe~~a------------g~a--~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~ 104 (638)
T PRK05644 40 HLVYEIVDNSIDEALA------------GYC--DHIEVTINED-GSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGG 104 (638)
T ss_pred hhhHHhhhcccccccC------------CCC--CEEEEEEeCC-CcEEEEEeCccccCCccCCCCCCchHHheeeecccC
Confidence 4678999999994210 112 2466666654 489999999999876111 01112222221
Q ss_pred hhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCceEEEe-CCCCCCCCCccEEEEE
Q psy13233 161 AEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVN-DPRGDNLKRGTQISLE 239 (704)
Q Consensus 161 ~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f~I~~-~~~~~~~~~GT~I~L~ 239 (704)
+ | ... .- .-.-|..|+|.-|+=.++.+++|+|+..+ ..|.....+|.. +.+ .+.+.....||+|+.
T Consensus 105 k-f----d~~----~y-k~s~G~~G~Gls~vnalS~~~~v~t~r~g-~~~~~~~~~G~~-~~~~~~~~~~~~~GT~I~F- 171 (638)
T PRK05644 105 K-F----GGG----GY-KVSGGLHGVGVSVVNALSTWLEVEVKRDG-KIYYQEYERGVP-VTPLEVIGETDETGTTVTF- 171 (638)
T ss_pred c-c----CCC----cc-cccCCccccchhhhhheeceEEEEEEeCC-cEEEEEEECCeE-ccCccccCCcCCCCcEEEE-
Confidence 1 1 000 01 12469999999999999999999999754 344433333321 111 111223579999995
Q ss_pred eccchhcc----CCHHHHHHHHHHhcccC-CcceEEecc
Q psy13233 240 LKEEASDF----LEVNTLKDLIKKYSQFI-NFPIYIWSS 273 (704)
Q Consensus 240 Lked~~e~----l~~~~lk~likkys~fi-~~PI~l~~~ 273 (704)
.++..-| ++...|...++.++-.. ..-|.++..
T Consensus 172 -~Pd~~~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l~~e 209 (638)
T PRK05644 172 -KPDPEIFETTEFDYDTLATRLRELAFLNKGLKITLTDE 209 (638)
T ss_pred -EECHHHcCCcccCHHHHHHHHHHHHhhCCCcEEEEEec
Confidence 4444333 35577888888776443 345555543
No 33
>KOG1978|consensus
Probab=97.90 E-value=9.3e-06 Score=93.63 Aligned_cols=125 Identities=22% Similarity=0.297 Sum_probs=80.1
Q ss_pred hcCCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCC-cEEEEEeCCCCCCHHHHHHhhchhhcc
Q psy13233 80 NSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQEN-KMLHIIDSGIGMTKADLVKNLGTIAKS 158 (704)
Q Consensus 80 ~sLYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~-~~L~I~DNGiGMT~~eL~~~LgtIa~S 158 (704)
.+.-.+...+++|||-||.||.+. .|+|.++.-+ ..|.|.|||.|++..+..---...-.|
T Consensus 15 ~qvI~sl~sAVKELvENSiDAGAT------------------~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l~lkh~TS 76 (672)
T KOG1978|consen 15 SQVITSLVSAVKELVENSIDAGAT------------------AIDIKVKDYGSDSIEVSDNGSGISATDFEGLALKHTTS 76 (672)
T ss_pred CCeeccHHHHHHHHHhcCcccCCc------------------eeeEecCCCCcceEEEecCCCCCCccchhhhhhhhhhh
Confidence 344446678999999999999742 3666664333 689999999999988877311111122
Q ss_pred ChhhHHHhhhhhhcccccccccccccccce----eeeeeecCEEEEEEEeCC-CCcEEEEecC-CceEEEeCCCCCCCCC
Q psy13233 159 GTAEFLSQMSDKENIKHDLNDMIGQFGVGF----YSAFLVADKVLVTTKNNE-DSQYIWESDA-SSFSIVNDPRGDNLKR 232 (704)
Q Consensus 159 gt~~f~~~l~~~~~~~~d~~~~IGqFGIGF----ySaFmVAdkV~V~Sk~~~-d~~~~Wes~g-g~f~I~~~~~~~~~~~ 232 (704)
.-..| .++-.-|-.|| +|+.+.--.|.|.|++.+ ..+..|.-+. |... ...+ -..++
T Consensus 77 Ki~~f--------------~Dl~~l~T~GFRGEALSsLCa~~dv~I~Trt~~~~vgt~l~~Dh~G~I~-~k~~--~ar~~ 139 (672)
T KOG1978|consen 77 KIVSF--------------ADLAVLFTLGFRGEALSSLCALGDVMISTRSHSAKVGTRLVYDHDGHII-QKKP--VARGR 139 (672)
T ss_pred cccch--------------hhhhhhhhhhhHHHHHHhhhhccceEEEEeeccCccceeEEEccCCcee-eecc--ccCCC
Confidence 22222 23445555666 677766666778888864 4577787766 5443 2211 24589
Q ss_pred ccEEEEE
Q psy13233 233 GTQISLE 239 (704)
Q Consensus 233 GT~I~L~ 239 (704)
||+|++.
T Consensus 140 GTTV~v~ 146 (672)
T KOG1978|consen 140 GTTVMVR 146 (672)
T ss_pred CCEEEHh
Confidence 9999965
No 34
>KOG1979|consensus
Probab=97.77 E-value=8.2e-05 Score=84.50 Aligned_cols=146 Identities=26% Similarity=0.366 Sum_probs=90.8
Q ss_pred CCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCC-cEEEEEeCCCCCCHHHHHHhhchhhccCh
Q psy13233 82 LYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQEN-KMLHIIDSGIGMTKADLVKNLGTIAKSGT 160 (704)
Q Consensus 82 LYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~-~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt 160 (704)
+-.-|.-+|.|||.|+.||.. ..|.|.+-.++ +.|.|.|||.|+-++||.-..-+.+.|--
T Consensus 24 VI~RP~NAlKEliENSLDA~S------------------T~I~V~vk~GGLKLlQisDnG~GI~reDl~ilCeRftTSKL 85 (694)
T KOG1979|consen 24 VIQRPVNALKELIENSLDANS------------------TSIDVLVKDGGLKLLQISDNGSGIRREDLPILCERFTTSKL 85 (694)
T ss_pred hhhchHHHHHHHHhccccCCC------------------ceEEEEEecCCeEEEEEecCCCccchhhhHHHHHHhhhhhc
Confidence 334677899999999999942 35777775555 66789999999999999844334444533
Q ss_pred hhHHHhhhhhhcccccccccccccccce--eeeeeecCEEEEEEEeCCCCcEEEE-ecC-CceEEEeCCCCCCCCCccEE
Q psy13233 161 AEFLSQMSDKENIKHDLNDMIGQFGVGF--YSAFLVADKVLVTTKNNEDSQYIWE-SDA-SSFSIVNDPRGDNLKRGTQI 236 (704)
Q Consensus 161 ~~f~~~l~~~~~~~~d~~~~IGqFGIGF--ySaFmVAdkV~V~Sk~~~d~~~~We-s~g-g~f~I~~~~~~~~~~~GT~I 236 (704)
..| + | ...|..||.-- +|+..-+-+|+|+|+..++. +-|. +.. |... ..|.+-....||.|
T Consensus 86 ~kF-E----------D-L~~lsTyGFRGEALASiShVA~VtV~TK~~~~~-cayrasY~DGkm~--~~pKpcAgk~GT~I 150 (694)
T KOG1979|consen 86 TKF-E----------D-LFSLSTYGFRGEALASISHVAHVTVTTKTAEGK-CAYRASYRDGKMI--ATPKPCAGKQGTII 150 (694)
T ss_pred chh-H----------H-HHhhhhcCccHHHHhhhhheeEEEEEEeecCce-eeeEEEeeccccc--cCCCCccCCCceEE
Confidence 333 1 2 22344444332 45566677999999987543 3444 222 3322 23333345789999
Q ss_pred EEE------------eccchhccCCHHHHHHHHHHhccc
Q psy13233 237 SLE------------LKEEASDFLEVNTLKDLIKKYSQF 263 (704)
Q Consensus 237 ~L~------------Lked~~e~l~~~~lk~likkys~f 263 (704)
++. |+..+.|| .++-.++.+|+=+
T Consensus 151 ~vedLFYN~~~Rrkal~~~~EE~---~ki~dlv~ryAIH 186 (694)
T KOG1979|consen 151 TVEDLFYNMPTRRKALRNHAEEY---RKIMDLVGRYAIH 186 (694)
T ss_pred EehHhhccCHHHHHHhcCcHHHH---HHHHHHHHHHhee
Confidence 975 22222222 5677778888765
No 35
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.10 E-value=0.0013 Score=56.35 Aligned_cols=81 Identities=19% Similarity=0.292 Sum_probs=53.0
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQM 167 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l 167 (704)
..++||+.||.++... ...+.|.+..+.....|.|.|+|.||+.+.+...+.....+.
T Consensus 8 ~~~~~l~~n~~~~~~~--------------~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~-------- 65 (111)
T smart00387 8 QVLSNLLDNAIKYTPE--------------GGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRTD-------- 65 (111)
T ss_pred HHHHHHHHHHHhcCCC--------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEECC--------
Confidence 3577888888777421 234566666655556799999999999988876553322110
Q ss_pred hhhhcccccccccccccccceeeeeeecCEE
Q psy13233 168 SDKENIKHDLNDMIGQFGVGFYSAFLVADKV 198 (704)
Q Consensus 168 ~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV 198 (704)
.. ....++.|+|++.+-.++.+.
T Consensus 66 -------~~-~~~~~~~g~gl~~~~~~~~~~ 88 (111)
T smart00387 66 -------GR-SRKIGGTGLGLSIVKKLVELH 88 (111)
T ss_pred -------CC-CCCCCcccccHHHHHHHHHHc
Confidence 01 234577899998887766654
No 36
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=97.08 E-value=0.00073 Score=72.50 Aligned_cols=101 Identities=18% Similarity=0.273 Sum_probs=60.8
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQM 167 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l 167 (704)
..+..||+||..+. .....+.|.+..+.+.-.|+|.|||.||+.+++..-+.. .. +
T Consensus 250 ~il~nLi~NA~k~~--------------~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~-f~---~------ 305 (356)
T PRK10755 250 LLLRNLVENAHRYS--------------PEGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKA-FV---R------ 305 (356)
T ss_pred HHHHHHHHHHHhhC--------------CCCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCC-eE---e------
Confidence 35778888876552 112345666655555567999999999999998743321 10 0
Q ss_pred hhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCceEEEeCCCCCCCCCccEEEEEecc
Q psy13233 168 SDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQISLELKE 242 (704)
Q Consensus 168 ~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f~I~~~~~~~~~~~GT~I~L~Lke 242 (704)
. ...-|.+|+|++-+--+++.. ||.+.+...+ ...||+|++.+..
T Consensus 306 --~-------~~~~~g~GlGL~i~~~i~~~~-----------------gg~i~i~s~~----~~~Gt~~~i~~p~ 350 (356)
T PRK10755 306 --M-------DSRYGGIGLGLSIVSRITQLH-----------------HGQFFLQNRQ----ERSGTRAWVWLPK 350 (356)
T ss_pred --C-------CCCCCCcCHHHHHHHHHHHHC-----------------CCEEEEEECC----CCCeEEEEEEecC
Confidence 0 011256899997665554421 2445554421 1279999998753
No 37
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.04 E-value=0.0019 Score=54.47 Aligned_cols=85 Identities=19% Similarity=0.314 Sum_probs=55.6
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQM 167 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l 167 (704)
..++|||.||.++... ....+.|.+..+...-.|.|.|+|.||+...+...+...+.+
T Consensus 3 ~~~~~ll~Na~~~~~~-------------~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~--------- 60 (103)
T cd00075 3 QVLLNLLSNAIKHTPE-------------GGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDG--------- 60 (103)
T ss_pred HHHHHHHHHHHHhCcC-------------CCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC---------
Confidence 4689999999999531 123455555555444578999999999999887654332100
Q ss_pred hhhhcccccccccccccccceeeeeeecC----EEEEEE
Q psy13233 168 SDKENIKHDLNDMIGQFGVGFYSAFLVAD----KVLVTT 202 (704)
Q Consensus 168 ~~~~~~~~d~~~~IGqFGIGFySaFmVAd----kV~V~S 202 (704)
.. ....+.+|+|++.+-.+++ .+.+.+
T Consensus 61 -------~~-~~~~~~~g~gl~~~~~~~~~~~g~~~~~~ 91 (103)
T cd00075 61 -------SR-SRKGGGTGLGLSIVKKLVELHGGRIEVES 91 (103)
T ss_pred -------CC-CCCCCccccCHHHHHHHHHHcCCEEEEEe
Confidence 00 2234678999988877776 555543
No 38
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=96.92 E-value=0.0032 Score=74.31 Aligned_cols=158 Identities=16% Similarity=0.228 Sum_probs=90.9
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHH-------Hh-hchhhccC
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLV-------KN-LGTIAKSG 159 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~-------~~-LgtIa~Sg 159 (704)
..+.|+|.||.|-.-. +... .|.|.+++ ++.|+|.|||-||..+--. +. |+++-.+|
T Consensus 37 hlv~EIvdNavDE~~a------------g~~~--~I~V~i~~-dgsitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGg 101 (637)
T TIGR01058 37 HLVWEIVDNSVDEVLA------------GYAD--NITVTLHK-DNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGG 101 (637)
T ss_pred eehhhhhcchhhhhhc------------CCCc--EEEEEEcC-CCeEEEEECCCcccCcccCcCCCccceeEEEEecccC
Confidence 4667999999995210 1122 47777764 4689999999999853111 11 22222222
Q ss_pred hhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCC-cEEEEecCCceEEEeC-CCCCCCCCccEEE
Q psy13233 160 TAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDS-QYIWESDASSFSIVND-PRGDNLKRGTQIS 237 (704)
Q Consensus 160 t~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~-~~~Wes~gg~f~I~~~-~~~~~~~~GT~I~ 237 (704)
+ | .. ..-.-.-|..|||.-.+=.++.+++|.+++++.. .-.|+..+ . .+.+. ..+....+||+|+
T Consensus 102 k--f----d~-----~~ykvSGGlhGvG~svvNAlS~~~~V~v~r~gk~~~q~f~~Gg-~-~~~~l~~~~~~~~~GT~V~ 168 (637)
T TIGR01058 102 K--F----DQ-----GGYKTAGGLHGVGASVVNALSSWLEVTVKRDGQIYQQRFENGG-K-IVQSLKKIGTTKKTGTLVH 168 (637)
T ss_pred c--C----CC-----CcccccCCcccccccccceeeceEEEEEEECCEEEEEEEecCC-c-CcCCcccccCCCCCceEEE
Confidence 2 2 00 0101234999999999999999999999864321 22454322 1 11111 0123346999999
Q ss_pred EEeccchh--ccCCHHHHHHHHHHhcccC-CcceEEecc
Q psy13233 238 LELKEEAS--DFLEVNTLKDLIKKYSQFI-NFPIYIWSS 273 (704)
Q Consensus 238 L~Lked~~--e~l~~~~lk~likkys~fi-~~PI~l~~~ 273 (704)
.....+-. .-++.+.|+.-++..+=.. ..-|.++.+
T Consensus 169 F~PD~~iF~~~~f~~d~l~~RlrelA~Ln~GL~I~l~de 207 (637)
T TIGR01058 169 FHPDPTIFKTTQFNSNIIKERLKESAFLLKKLKLTFTDK 207 (637)
T ss_pred EEeCHHHcCCCccCHHHHHHHHHHHhccCCCcEEEEEec
Confidence 88655421 1246677777777666333 366666653
No 39
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=96.88 E-value=0.0014 Score=77.52 Aligned_cols=96 Identities=24% Similarity=0.353 Sum_probs=58.0
Q ss_pred hHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHhhh
Q psy13233 89 FLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMS 168 (704)
Q Consensus 89 fLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l~ 168 (704)
.+.+||+||.++.. ....+.|++..+.+.-.|+|.|||.||+.+.+.+.+..-..++
T Consensus 583 vl~nLl~NAik~~~--------------~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~--------- 639 (679)
T TIGR02916 583 VLGHLVQNALEATP--------------GEGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTT--------- 639 (679)
T ss_pred HHHHHHHHHHHhCC--------------CCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCC---------
Confidence 56778888777631 1234555555544455789999999999998655442211110
Q ss_pred hhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCceEEEeCCCCCCCCCccEEEEEe
Q psy13233 169 DKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQISLEL 240 (704)
Q Consensus 169 ~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f~I~~~~~~~~~~~GT~I~L~L 240 (704)
. . +..|+|.+.+--+++.. ||.+.+... .+.||++++.+
T Consensus 640 -------~--~--~G~GLGL~i~~~iv~~~-----------------gG~i~v~s~-----~g~Gt~f~i~L 678 (679)
T TIGR02916 640 -------K--G--AGMGIGVYECRQYVEEI-----------------GGRIEVEST-----PGQGTIFTLVL 678 (679)
T ss_pred -------C--C--CCcchhHHHHHHHHHHc-----------------CCEEEEEec-----CCCceEEEEEe
Confidence 1 1 56789998765544321 244555432 25789888875
No 40
>PRK10604 sensor protein RstB; Provisional
Probab=96.87 E-value=0.0016 Score=72.53 Aligned_cols=101 Identities=16% Similarity=0.207 Sum_probs=60.6
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQM 167 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l 167 (704)
..+..||+||..+. ...+.|.+..+.+.-.|+|.|||.||+.+++..-+....+..
T Consensus 322 ~vl~NLl~NAik~~----------------~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~-------- 377 (433)
T PRK10604 322 RVLDNLLNNALRYA----------------HSRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLD-------- 377 (433)
T ss_pred HHHHHHHHHHHHhC----------------CCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCC--------
Confidence 35777888876552 134556666665556799999999999999885443222110
Q ss_pred hhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCceEEEeCCCCCCCCCccEEEEEec
Q psy13233 168 SDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQISLELK 241 (704)
Q Consensus 168 ~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f~I~~~~~~~~~~~GT~I~L~Lk 241 (704)
......-|.+|+|++-+--+++. .||.+.+... ...||++++.+.
T Consensus 378 -------~~~~~~~~g~GLGL~ivk~i~~~-----------------~gG~i~v~s~-----~~~G~~f~i~lP 422 (433)
T PRK10604 378 -------PSRDRATGGCGLGLAIVHSIALA-----------------MGGSVNCDES-----ELGGARFSFSWP 422 (433)
T ss_pred -------CCCCCCCCCccchHHHHHHHHHH-----------------CCCEEEEEec-----CCCeeEEEEEEe
Confidence 00012236789999654433331 1244555442 257888888874
No 41
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.86 E-value=0.0015 Score=72.24 Aligned_cols=102 Identities=19% Similarity=0.259 Sum_probs=58.2
Q ss_pred hHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHhhh
Q psy13233 89 FLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMS 168 (704)
Q Consensus 89 fLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l~ 168 (704)
.|..||.||..+. .....+.|.+..+.+.-.|+|.|||.||+.+++..-+...-+..
T Consensus 356 vl~nll~NAi~~~--------------~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~--------- 412 (466)
T PRK10549 356 LFNNLLENSLRYT--------------DSGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRTE--------- 412 (466)
T ss_pred HHHHHHHHHHHhC--------------CCCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccCC---------
Confidence 4556666766552 11234555555554445789999999999998875443221110
Q ss_pred hhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCceEEEeCCCCCCCCCccEEEEEec
Q psy13233 169 DKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQISLELK 241 (704)
Q Consensus 169 ~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f~I~~~~~~~~~~~GT~I~L~Lk 241 (704)
.......|..|+|++-+-.+++.. +|.+.+... .+.||+++|.+.
T Consensus 413 ------~~~~~~~~g~GlGL~iv~~i~~~~-----------------~G~l~~~s~-----~~~G~~~~i~lP 457 (466)
T PRK10549 413 ------GSRNRASGGSGLGLAICLNIVEAH-----------------NGRIIAAHS-----PFGGVSITVELP 457 (466)
T ss_pred ------CCcCCCCCCCcHHHHHHHHHHHHc-----------------CCEEEEEEC-----CCCeEEEEEEcc
Confidence 000123467899997654444331 244444432 256888888764
No 42
>KOG1977|consensus
Probab=96.85 E-value=0.00044 Score=80.01 Aligned_cols=124 Identities=19% Similarity=0.249 Sum_probs=71.4
Q ss_pred ChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHH
Q psy13233 86 KEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLS 165 (704)
Q Consensus 86 ~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~ 165 (704)
-..+++||++|+.||.++ .|.|.++-..-.+.|.|||+||+++||. .||+--..++-.|++
T Consensus 22 la~~VeElv~NSiDA~At------------------~V~v~V~~~t~sv~ViDdG~G~~rdDl~-~lg~ry~TSK~h~~n 82 (1142)
T KOG1977|consen 22 LAQCVEELVLNSIDAEAT------------------CVAVRVNMETFSVQVIDDGFGMGRDDLE-KLGNRYFTSKCHSVN 82 (1142)
T ss_pred HHHHHHHHHhhccccCce------------------EEEEEecCceeEEEEEecCCCccHHHHH-HHHhhhhhhhceecc
Confidence 346899999999999542 3555566677889999999999999998 455432222211222
Q ss_pred hhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCC-CCcEEE--EecC-CceEEEeCCCCCCCCCccEEEEE
Q psy13233 166 QMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNE-DSQYIW--ESDA-SSFSIVNDPRGDNLKRGTQISLE 239 (704)
Q Consensus 166 ~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~-d~~~~W--es~g-g~f~I~~~~~~~~~~~GT~I~L~ 239 (704)
.+. . ....|--|=.++|.-=++.-+ |.|+..+ ..++.. ...| ..-.+..+ ..+...||+|+++
T Consensus 83 dl~-------~-~~tyGfRGeALasIsd~s~l~-v~skkk~r~~~~~~kk~~~gs~~~~l~iD--~~R~~sGTtVtV~ 149 (1142)
T KOG1977|consen 83 DLE-------N-PRTYGFRGEALASISDMSSLV-VISKKKNRTMKTFVKKFQSGSALKALEID--VTRASSGTTVTVY 149 (1142)
T ss_pred ccc-------c-ccccccchhhhhhhhhhhhhh-hhhhhcCCchhHHHHHHhccccceecccc--cccccCCcEEEeH
Confidence 221 1 334566665555554444444 5555533 233321 1122 22222222 2456899999987
No 43
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.81 E-value=0.0018 Score=71.03 Aligned_cols=100 Identities=15% Similarity=0.226 Sum_probs=58.4
Q ss_pred hHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHhhh
Q psy13233 89 FLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMS 168 (704)
Q Consensus 89 fLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l~ 168 (704)
.+.+||.||..+. .....+.|++..+.+.-.|+|.|||.||+.+.+...+-..-++..
T Consensus 357 ~~~nll~Nai~~~--------------~~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~-------- 414 (457)
T TIGR01386 357 AISNLLSNALRHT--------------PDGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDP-------- 414 (457)
T ss_pred HHHHHHHHHHHcC--------------CCCceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCc--------
Confidence 4566666666552 112345555555544457999999999999988864433222111
Q ss_pred hhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCceEEEeCCCCCCCCCccEEEEEe
Q psy13233 169 DKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQISLEL 240 (704)
Q Consensus 169 ~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f~I~~~~~~~~~~~GT~I~L~L 240 (704)
.....-+..|+|.+-+--++++ .+|++.+.. + +.||+|+|.+
T Consensus 415 -------~~~~~~~g~GlGL~i~~~~~~~-----------------~~G~~~~~~-~-----~~G~~~~~~~ 456 (457)
T TIGR01386 415 -------ARSNSGEGTGLGLAIVRSIMEA-----------------HGGRASAES-P-----DGKTRFILRF 456 (457)
T ss_pred -------ccCCCCCCccccHHHHHHHHHH-----------------CCCEEEEEe-C-----CCceEEEEec
Confidence 0011235688998765443332 135666654 2 5799998875
No 44
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=96.79 E-value=0.0018 Score=71.78 Aligned_cols=103 Identities=16% Similarity=0.247 Sum_probs=59.8
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQM 167 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l 167 (704)
..+..||+||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++.+-+-.--+. .
T Consensus 320 ~vl~NLl~NAik~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~-~------- 377 (430)
T PRK11006 320 SAISNLVYNAVNHTP--------------EGTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYRV-D------- 377 (430)
T ss_pred HHHHHHHHHHHhcCC--------------CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCcccc-c-------
Confidence 456788888887731 122344444444445579999999999999887533211110 0
Q ss_pred hhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCceEEEeCCCCCCCCCccEEEEEec
Q psy13233 168 SDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQISLELK 241 (704)
Q Consensus 168 ~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f~I~~~~~~~~~~~GT~I~L~Lk 241 (704)
.....-.|..|+|++-|-.++.. .||.+.+... .+.||++++.+.
T Consensus 378 -------~~~~~~~~G~GLGL~ivk~iv~~-----------------~gG~i~i~s~-----~~~Gt~f~i~lP 422 (430)
T PRK11006 378 -------KARSRQTGGSGLGLAIVKHALSH-----------------HDSRLEIESE-----VGKGTRFSFVLP 422 (430)
T ss_pred -------CCCCCCCCCCchHHHHHHHHHHH-----------------CCCEEEEEec-----CCCceEEEEEec
Confidence 00012235679999765544322 1344555432 257899888875
No 45
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=96.78 E-value=0.0024 Score=70.37 Aligned_cols=48 Identities=15% Similarity=0.304 Sum_probs=34.9
Q ss_pred hHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhh
Q psy13233 89 FLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNL 152 (704)
Q Consensus 89 fLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~L 152 (704)
.|++||+||..+. ...+.|++..+.+.-.|+|.|||.||+.+++...+
T Consensus 357 ~l~nli~NA~~~~----------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 404 (461)
T PRK09470 357 ALENIVRNALRYS----------------HTKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIF 404 (461)
T ss_pred HHHHHHHHHHHhC----------------CCcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhc
Confidence 4778888877552 12456666666655679999999999999887544
No 46
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.75 E-value=0.0029 Score=69.45 Aligned_cols=102 Identities=18% Similarity=0.295 Sum_probs=60.5
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEE--cCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHH
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKA--DQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLS 165 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~--d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~ 165 (704)
..|..|+.||.+++... ......|.|.. +.+.-.|+|.|||+||+.+.+..-|-... ++
T Consensus 390 ~vl~Nl~~NAik~~~~~------------~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~-~~------ 450 (494)
T TIGR02938 390 SLFKALVDNAIEAMNIK------------GWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFF-TT------ 450 (494)
T ss_pred HHHHHHHHHHHHHhhcc------------CCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCc-cc------
Confidence 47899999999986421 01122344443 44445789999999999988775442211 10
Q ss_pred hhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCceEEEeCCCCCCCCCccEEEEEec
Q psy13233 166 QMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQISLELK 241 (704)
Q Consensus 166 ~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f~I~~~~~~~~~~~GT~I~L~Lk 241 (704)
. ....+.-|+|++-+-.+++. .||...+... .+.||++++.|.
T Consensus 451 ---------~--~~~~~G~GlGL~i~~~iv~~-----------------~gG~i~~~s~-----~~~G~~f~i~lp 493 (494)
T TIGR02938 451 ---------K--GGSRKHIGMGLSVAQEIVAD-----------------HGGIIDLDDD-----YSEGCRIIVEFR 493 (494)
T ss_pred ---------C--CCCCCCCcccHHHHHHHHHH-----------------cCCEEEEEEC-----CCCCEEEEEEec
Confidence 0 11145578888765443322 2355555443 257999888763
No 47
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.64 E-value=0.0032 Score=69.30 Aligned_cols=102 Identities=21% Similarity=0.174 Sum_probs=59.1
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQM 167 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l 167 (704)
..+.+||.||..+. .....+.|++..+.+.-.|+|.|||.||+.+++...+ ....+.. .
T Consensus 371 ~vl~nli~Na~~~~--------------~~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~-~~~~~~~------~ 429 (475)
T PRK11100 371 QALGNLLDNAIDFS--------------PEGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIF-ERFYSLP------R 429 (475)
T ss_pred HHHHHHHHHHHHhC--------------CCCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHH-HHHccCC------C
Confidence 34677777777652 1123455555555555679999999999998887443 2221110 0
Q ss_pred hhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCceEEEeCCCCCCCCCccEEEEEec
Q psy13233 168 SDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQISLELK 241 (704)
Q Consensus 168 ~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f~I~~~~~~~~~~~GT~I~L~Lk 241 (704)
. ...-+..|+|++.+-.++... +|.+.+... .+.||+|++.+.
T Consensus 430 -------~--~~~~~~~GlGL~i~~~~~~~~-----------------~G~i~i~s~-----~~~Gt~v~i~lp 472 (475)
T PRK11100 430 -------P--ANGRKSTGLGLAFVREVARLH-----------------GGEVTLRNR-----PEGGVLATLTLP 472 (475)
T ss_pred -------C--CCCCCCcchhHHHHHHHHHHC-----------------CCEEEEEEc-----CCCeEEEEEEee
Confidence 0 111245688887765443321 345555543 246999998874
No 48
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=96.57 E-value=0.003 Score=65.51 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=32.9
Q ss_pred hHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhh
Q psy13233 89 FLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNL 152 (704)
Q Consensus 89 fLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~L 152 (704)
.|.+||.||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+.+...+
T Consensus 233 vl~nll~Nai~~~~--------------~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if 282 (333)
T TIGR02966 233 AFSNLVSNAIKYTP--------------EGGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLT 282 (333)
T ss_pred HHHHHHHHhheeCC--------------CCCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhc
Confidence 57778888766621 122344444444444569999999999999887443
No 49
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=96.41 E-value=0.0054 Score=74.15 Aligned_cols=50 Identities=18% Similarity=0.322 Sum_probs=33.7
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNL 152 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~L 152 (704)
..|..||+||..+.. ...+.|++..+.+.-.|+|.|||+||+.+++.+-+
T Consensus 516 ~il~NLl~NAik~~~---------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 565 (921)
T PRK15347 516 QILVNLLGNAVKFTE---------------TGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIF 565 (921)
T ss_pred HHHHHHHHHHhhcCC---------------CCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHh
Confidence 356677888776621 22355555555444578999999999999987543
No 50
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.38 E-value=0.0065 Score=68.42 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=36.6
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNL 152 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~L 152 (704)
..|.+|+.||.+|+.. .....+.|++..+.+.-.|+|.|||.||+.+++..-+
T Consensus 436 ~vl~nLl~NAi~~~~~------------~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF 488 (542)
T PRK11086 436 TILGNLIENALEAVGG------------EEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIF 488 (542)
T ss_pred HHHHHHHHHHHHHhhc------------CCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHH
Confidence 3577999999999631 0123344555554444578999999999999887544
No 51
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=96.29 E-value=0.0073 Score=67.90 Aligned_cols=49 Identities=27% Similarity=0.319 Sum_probs=32.8
Q ss_pred hHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCC-cEEEEEeCCCCCCHHHHHHh
Q psy13233 89 FLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQEN-KMLHIIDSGIGMTKADLVKN 151 (704)
Q Consensus 89 fLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~-~~L~I~DNGiGMT~~eL~~~ 151 (704)
.+.+||.||..+.. ....+.|.+..+.+. -.|.|+|||+||+.+.+...
T Consensus 504 ~~~nli~na~~~~~--------------~~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~ 553 (607)
T PRK11360 504 VLLNILINAVQAIS--------------ARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKI 553 (607)
T ss_pred HHHHHHHHHHHHhc--------------CCCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhh
Confidence 46677777776632 123344555444444 67999999999999988743
No 52
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.28 E-value=0.0064 Score=69.32 Aligned_cols=98 Identities=14% Similarity=0.203 Sum_probs=58.8
Q ss_pred hHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHhhh
Q psy13233 89 FLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMS 168 (704)
Q Consensus 89 fLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l~ 168 (704)
.+.-||.||..++. ..+.|.+..+.+.-.|+|.|||.||+.+++..-+. .+.+
T Consensus 382 vl~NLi~NAik~~~----------------~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~----~f~~------- 434 (485)
T PRK10815 382 VMGNVLDNACKYCL----------------EFVEISARQTDEHLHIVVEDDGPGIPESKRELIFD----RGQR------- 434 (485)
T ss_pred HHHHHHHHHHHhcC----------------CcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhC----Cccc-------
Confidence 56667777766641 13455555554445789999999999998875432 1110
Q ss_pred hhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCceEEEeCCCCCCCCCccEEEEEeccc
Q psy13233 169 DKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQISLELKEE 243 (704)
Q Consensus 169 ~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f~I~~~~~~~~~~~GT~I~L~Lked 243 (704)
. + ..-+..|+|++-|--+++. .||.+.+... .+.||++++.++..
T Consensus 435 -~-----~--~~~~G~GLGL~Ivk~iv~~-----------------~gG~i~v~s~-----~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 435 -A-----D--TLRPGQGLGLSVAREITEQ-----------------YEGKISAGDS-----PLGGARMEVIFGRQ 479 (485)
T ss_pred -C-----C--CCCCCcchhHHHHHHHHHH-----------------cCCEEEEEEC-----CCCEEEEEEEEcCC
Confidence 0 0 1113479998765544432 1355555543 25799999998654
No 53
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=96.26 E-value=0.0082 Score=72.78 Aligned_cols=49 Identities=29% Similarity=0.458 Sum_probs=33.8
Q ss_pred hHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhh
Q psy13233 89 FLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNL 152 (704)
Q Consensus 89 fLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~L 152 (704)
.|..||+||..+.. ...+.|.+..+...-.|.|.|||+||+.+++...+
T Consensus 565 il~NLl~NAik~~~---------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 613 (914)
T PRK11466 565 VITNLLSNALRFTD---------------EGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIF 613 (914)
T ss_pred HHHHHHHHHHHhCC---------------CCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHh
Confidence 56777888776621 12345555555444579999999999999987544
No 54
>PRK10364 sensor protein ZraS; Provisional
Probab=96.23 E-value=0.0089 Score=66.71 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=35.8
Q ss_pred hHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhh
Q psy13233 89 FLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNL 152 (704)
Q Consensus 89 fLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~L 152 (704)
.+..||.||.+|+. ....+.|.+..+.+.-.|+|.|||.||+.+.+.+-+
T Consensus 352 il~NLl~NA~k~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 401 (457)
T PRK10364 352 VLLNLYLNAIQAIG--------------QHGVISVTASESGAGVKISVTDSGKGIAADQLEAIF 401 (457)
T ss_pred HHHHHHHHHHHhcC--------------CCCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHh
Confidence 46778889888852 123455666655555689999999999999887443
No 55
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.20 E-value=0.0092 Score=67.87 Aligned_cols=104 Identities=16% Similarity=0.286 Sum_probs=61.0
Q ss_pred hHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHhhh
Q psy13233 89 FLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMS 168 (704)
Q Consensus 89 fLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l~ 168 (704)
.|.+||.||.+|+.+. + .....+.|.+..+.+.-.|.|.|||.||+.+++..-+.. +.+++
T Consensus 436 vl~nLl~NAi~~~~~~-------~---~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~-~~~tk-------- 496 (545)
T PRK15053 436 IVGNLLDNAFEASLRS-------D---EGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQ-GVSTR-------- 496 (545)
T ss_pred HHHHHHHHHHHHHhhC-------C---CCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCC-CCCCC--------
Confidence 5889999999997421 0 011233444444333456899999999999988754421 11111
Q ss_pred hhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCceEEEeCCCCCCCCCccEEEEEecc
Q psy13233 169 DKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQISLELKE 242 (704)
Q Consensus 169 ~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f~I~~~~~~~~~~~GT~I~L~Lke 242 (704)
. .. -|..|+|++-+.-+++. + +|.+.+... .+.||++++.|..
T Consensus 497 -------~-~~-~~g~GlGL~ivk~iv~~------~-----------~G~i~v~s~-----~~~Gt~f~i~lP~ 539 (545)
T PRK15053 497 -------A-DE-PGEHGIGLYLIASYVTR------C-----------GGVITLEDN-----DPCGTLFSIFIPK 539 (545)
T ss_pred -------C-CC-CCCceeCHHHHHHHHHH------c-----------CCEEEEEEC-----CCCeEEEEEEECC
Confidence 0 11 24569999876555432 1 244444432 3688998888753
No 56
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=96.19 E-value=0.0094 Score=72.55 Aligned_cols=50 Identities=18% Similarity=0.385 Sum_probs=37.2
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCC-cEEEEEeCCCCCCHHHHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQEN-KMLHIIDSGIGMTKADLVKNL 152 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~-~~L~I~DNGiGMT~~eL~~~L 152 (704)
-.|..||+||..+.. .+.+.|.+....+. -.|.|.|||+||+.+++..-|
T Consensus 582 ~il~nLi~NAik~~~---------------~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 632 (968)
T TIGR02956 582 QVLINLVGNAIKFTD---------------RGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLF 632 (968)
T ss_pred HHHHHHHHHHHhhCC---------------CCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHH
Confidence 367888999887731 23456676666666 679999999999999887544
No 57
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=96.16 E-value=0.028 Score=65.51 Aligned_cols=160 Identities=16% Similarity=0.175 Sum_probs=94.9
Q ss_pred ChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHH--------HHHhhchhhc
Q psy13233 86 KEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKAD--------LVKNLGTIAK 157 (704)
Q Consensus 86 ~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~e--------L~~~LgtIa~ 157 (704)
....+.|.|-||.|--- .+... .|.|.++ .++.|+|.|||-||.-+. +.-.|..+-.
T Consensus 37 LhHlv~EVvDNsiDEal------------aG~~~--~I~V~l~-~d~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHA 101 (635)
T COG0187 37 LHHLVWEVVDNSIDEAL------------AGYAD--RIDVTLH-EDGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHA 101 (635)
T ss_pred ceeeEeEeeechHhHHh------------hCcCc--EEEEEEc-CCCeEEEEECCCCCccccCCCCCCCceEEEEEeecc
Confidence 35678899999999631 12223 4677776 578899999999998654 1111222222
Q ss_pred cChhhHHHhhhhhhcccccccc-cccccccceeeeeeecCEEEEEEEeCCCC-cEEEEecC-CceEEEeCCCCCCCCCcc
Q psy13233 158 SGTAEFLSQMSDKENIKHDLND-MIGQFGVGFYSAFLVADKVLVTTKNNEDS-QYIWESDA-SSFSIVNDPRGDNLKRGT 234 (704)
Q Consensus 158 Sgt~~f~~~l~~~~~~~~d~~~-~IGqFGIGFySaFmVAdkV~V~Sk~~~d~-~~~Wes~g-g~f~I~~~~~~~~~~~GT 234 (704)
+|+ |- . +... .=|-.|||.--+=.++++++|+++.++.. .-.|+ +| ..-.+.....+.....||
T Consensus 102 GGK--Fd----~------~~YkvSGGLHGVG~SVVNALS~~l~v~v~r~gk~y~q~f~-~G~~~~~l~~ig~~~~~~~GT 168 (635)
T COG0187 102 GGK--FD----N------DSYKVSGGLHGVGVSVVNALSTWLEVEVKRDGKIYRQRFE-RGVPVTPLEVIGSTDTKKTGT 168 (635)
T ss_pred Ccc--cC----C------CccEeecCCCccceEEEecccceEEEEEEECCEEEEEEEe-CCCcCCCceecccCCCCCCcc
Confidence 222 21 0 1011 23899999988899999999999886321 12343 33 111222111134557899
Q ss_pred EEEEEeccchh--ccCCHHHHHHHHHHhcccCC-cceEEecc
Q psy13233 235 QISLELKEEAS--DFLEVNTLKDLIKKYSQFIN-FPIYIWSS 273 (704)
Q Consensus 235 ~I~L~Lked~~--e~l~~~~lk~likkys~fi~-~PI~l~~~ 273 (704)
+|+.+..+.-. .-.+...|+..++.++=..+ .-|.+..+
T Consensus 169 ~V~F~PD~~iF~~~~f~~~~l~~RlrelA~L~~gl~I~l~d~ 210 (635)
T COG0187 169 KVRFKPDPEIFGETEFDYEILKRRLRELAFLNKGVKITLTDE 210 (635)
T ss_pred EEEEEcChHhcCCcccCHHHHHHHHHHHhccCCCCEEEEEec
Confidence 99988554421 11366778877776654443 66776544
No 58
>PRK09303 adaptive-response sensory kinase; Validated
Probab=96.13 E-value=0.012 Score=64.81 Aligned_cols=78 Identities=13% Similarity=0.206 Sum_probs=44.7
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCC-cEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQEN-KMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQ 166 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~-~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~ 166 (704)
-.|..||.||..+.. ....+.|.+....+. -.|+|.|||.||+.+++..-|-.-- +.
T Consensus 275 qvl~NLl~NAik~~~--------------~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~-~~------- 332 (380)
T PRK09303 275 QVLLNLLDNAIKYTP--------------EGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRV-RL------- 332 (380)
T ss_pred HHHHHHHHHHHhcCC--------------CCceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCce-eC-------
Confidence 457778888877631 122333433332222 4689999999999998875432111 00
Q ss_pred hhhhhcccccccccccccccceeeeeeecC
Q psy13233 167 MSDKENIKHDLNDMIGQFGVGFYSAFLVAD 196 (704)
Q Consensus 167 l~~~~~~~~d~~~~IGqFGIGFySaFmVAd 196 (704)
. . ..-.+..|+|++-|.-+++
T Consensus 333 -~------~--~~~~~G~GLGL~i~~~iv~ 353 (380)
T PRK09303 333 -P------R--DEGTEGYGIGLSVCRRIVR 353 (380)
T ss_pred -C------C--CCCCCcccccHHHHHHHHH
Confidence 0 0 1123568999977765554
No 59
>PLN03237 DNA topoisomerase 2; Provisional
Probab=96.11 E-value=0.031 Score=70.77 Aligned_cols=160 Identities=16% Similarity=0.267 Sum_probs=93.9
Q ss_pred hhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHH-------H-hhchhhcc
Q psy13233 87 EIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLV-------K-NLGTIAKS 158 (704)
Q Consensus 87 ~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~-------~-~LgtIa~S 158 (704)
.-.+.|+|-||.|-.- | ++ .--.|.|.++.+++.|+|.|||-||.-+--. + .|+++-.|
T Consensus 79 ~kifdEIldNAvDe~~--r-----~g------~~~~I~V~I~~~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAG 145 (1465)
T PLN03237 79 YKIFDEILVNAADNKQ--R-----DP------KMDSLRVVIDVEQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTS 145 (1465)
T ss_pred hhhHHHHhhhhHhHHh--h-----cC------CCCEEEEEEEcCCCEEEEEecCccccCCCCCCCCCccceEEEEeeecc
Confidence 3578999999999742 1 11 1235777888778899999999998754111 1 12333333
Q ss_pred ChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCC-CCcE--EEEec-C--CceEEEeCCCCCCCCC
Q psy13233 159 GTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNE-DSQY--IWESD-A--SSFSIVNDPRGDNLKR 232 (704)
Q Consensus 159 gt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~-d~~~--~Wes~-g--g~f~I~~~~~~~~~~~ 232 (704)
|+ | ... ...-.-|..|||.--+=.++.+++|+++... +..| .|..+ | ..-.|.. +....+
T Consensus 146 gk--F----dd~-----~yKvSGGlhGVGasvvNaLS~~f~Vev~Dg~~gk~y~Q~f~~nmG~~~~p~i~~---~~~~~~ 211 (1465)
T PLN03237 146 SN--Y----DDN-----EKKTTGGRNGYGAKLTNIFSTEFVIETADGKRQKKYKQVFSNNMGKKSEPVITK---CKKSEN 211 (1465)
T ss_pred cc--C----CCC-----cceeeccccccCccccccccCeeEEEEEECCCCeEEEEEEeCCCCccCCceecc---CCCCCC
Confidence 32 2 110 1022359999999999999999999998432 2233 56532 2 1111221 112369
Q ss_pred ccEEEEEeccchh--ccCCHHHHHHHHHH---hcccCC--cceEEecc
Q psy13233 233 GTQISLELKEEAS--DFLEVNTLKDLIKK---YSQFIN--FPIYIWSS 273 (704)
Q Consensus 233 GT~I~L~Lked~~--e~l~~~~lk~likk---ys~fi~--~PI~l~~~ 273 (704)
||+|+......-. .-++.+.|..+.++ .+-|++ .-|+|+++
T Consensus 212 GT~VtF~PD~eiF~~~~fd~D~l~~~~rRlrdLAa~LnkGlkI~Lnde 259 (1465)
T PLN03237 212 WTKVTFKPDLAKFNMTHLEDDVVALMKKRVVDIAGCLGKTVKVELNGK 259 (1465)
T ss_pred ceEEEEEECHHHhCCceEcHHHHHHHHHHHHHHHhccCCCcEEEEEec
Confidence 9999877543321 12366666544333 345664 67777754
No 60
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=95.80 E-value=0.039 Score=65.00 Aligned_cols=157 Identities=13% Similarity=0.154 Sum_probs=87.0
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHH--h---------hchhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVK--N---------LGTIA 156 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~--~---------LgtIa 156 (704)
..+.|+|-||+|-.. .+|. ..--.|.|.++ ++.++|.|||-||.-+--.+ . |+++-
T Consensus 48 hi~~EIldNavDe~~-------~~~~----g~~~~I~V~i~--dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~Lh 114 (602)
T PHA02569 48 KIIDEIIDNSVDEAI-------RTNF----KFANKIDVTIK--NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTK 114 (602)
T ss_pred eeeehhhhhhhhhhh-------ccCC----CCCcEEEEEEc--CCEEEEEECCCcccCCcccccccccccceEEEEEeec
Confidence 456799999999631 1221 11235777776 67899999999998643211 1 22222
Q ss_pred ccChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCC-cEEEEecCCceEEEeCCCCCCCCCccE
Q psy13233 157 KSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDS-QYIWESDASSFSIVNDPRGDNLKRGTQ 235 (704)
Q Consensus 157 ~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~-~~~Wes~gg~f~I~~~~~~~~~~~GT~ 235 (704)
.+|+ | . + .- .-.-|..|||.-.+=.++.+++|+++..+.. ...|+ +| . ...+.+.+....+||+
T Consensus 115 aGgk--F-d----~----~y-kvSGGlhGVG~svvNaLS~~~~V~v~~~~~~~~q~f~-~G-~-~~~~~~~~~~~~~GT~ 179 (602)
T PHA02569 115 AGSN--F-D----D----TN-RVTGGMNGVGSSLTNFFSVLFIGETCDGKNEVTVNCS-NG-A-ENISWSTKPGKGKGTS 179 (602)
T ss_pred cccc--c-C----C----cc-eeeCCcCCccceeeeccchhhheEEEcCCEEEEEEec-CC-c-ccCCcccCCCCCCccE
Confidence 2222 3 1 0 00 1235999999988889999999988542211 22343 22 1 1111112334469999
Q ss_pred EEEEeccchhcc--CC---HHHHHHHHHHhcccCC--cceEEecc
Q psy13233 236 ISLELKEEASDF--LE---VNTLKDLIKKYSQFIN--FPIYIWSS 273 (704)
Q Consensus 236 I~L~Lked~~e~--l~---~~~lk~likkys~fi~--~PI~l~~~ 273 (704)
|+......-..- ++ .+.|..-++..+ |++ .-|+++.+
T Consensus 180 V~F~PD~~iF~~~~~~~~~~~~l~~Rl~elA-~Ln~Gl~I~l~de 223 (602)
T PHA02569 180 VTFIPDFSHFEVNGLDQQYLDIILDRLQTLA-VVFPDIKFTFNGK 223 (602)
T ss_pred EEEEECHHHhCCCccCccHHHHHHHHHHHHh-cCCCCCEEEEEec
Confidence 998865443211 22 344555555443 443 56666543
No 61
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=95.76 E-value=0.018 Score=63.22 Aligned_cols=33 Identities=12% Similarity=0.251 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhh
Q psy13233 120 ELAIRIKADQENKMLHIIDSGIGMTKADLVKNL 152 (704)
Q Consensus 120 ~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~L 152 (704)
.+.|.+..+.+.-.|+|.|||.||+.+++...+
T Consensus 350 ~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~ 382 (435)
T PRK09467 350 WIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLF 382 (435)
T ss_pred eEEEEEEecCCEEEEEEEecCCCcCHHHHHHhc
Confidence 345555555444579999999999999887544
No 62
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=95.73 E-value=0.02 Score=68.56 Aligned_cols=50 Identities=28% Similarity=0.426 Sum_probs=35.1
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEc-CCCcEEEEEeCCCCCCHHHHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKAD-QENKMLHIIDSGIGMTKADLVKNL 152 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d-~~~~~L~I~DNGiGMT~~eL~~~L 152 (704)
-.|..||+||.++.. ...+.|.+..+ .+.-.|+|.|||+||+.+++..-|
T Consensus 401 qvl~NLl~NAik~~~---------------~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF 451 (779)
T PRK11091 401 QILWNLISNAVKFTQ---------------QGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIF 451 (779)
T ss_pred HHHHHHHHHHHHhCC---------------CCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHH
Confidence 357789999887731 23455666655 333578999999999999887544
No 63
>PLN03128 DNA topoisomerase 2; Provisional
Probab=95.67 E-value=0.056 Score=67.59 Aligned_cols=162 Identities=16% Similarity=0.229 Sum_probs=91.1
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHH-------H-hhchhhccC
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLV-------K-NLGTIAKSG 159 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~-------~-~LgtIa~Sg 159 (704)
-.+.|+|-||.|-.. | ++ .. -.|.|.++.+++.|+|.|||-||.-+.-. + .|+.+-.||
T Consensus 55 ki~dEIldNAvDe~~--~-----~g----~~--~~I~V~i~~~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGg 121 (1135)
T PLN03128 55 KIFDEILVNAADNKQ--R-----DP----SM--DSLKVDIDVEQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSS 121 (1135)
T ss_pred HHHHHHHHHHHHHhh--h-----cC----CC--cEEEEEEEcCCCeEEEEecCccccCCCCCCCCCccceEEEEeecccc
Confidence 467899999999731 1 11 11 25788888778899999999999764211 0 123333333
Q ss_pred hhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeC-CCCcE--EEEecCCceEEEeCCCCCCCCCccEE
Q psy13233 160 TAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNN-EDSQY--IWESDASSFSIVNDPRGDNLKRGTQI 236 (704)
Q Consensus 160 t~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~-~d~~~--~Wes~gg~f~I~~~~~~~~~~~GT~I 236 (704)
+ |- .. .- .-.-|..|||.-.+=.++.+++|++... ++..| .|+..-..-.......+....+||+|
T Consensus 122 k--Fd----d~----~y-kvSGGlhGvGasvvNaLS~~f~Vev~d~r~gk~y~q~f~~G~~~~~~p~i~~~~~~~~GT~I 190 (1135)
T PLN03128 122 N--FD----DN----EK-KTTGGRNGYGAKLANIFSTEFTVETADGNRGKKYKQVFTNNMSVKSEPKITSCKASENWTKI 190 (1135)
T ss_pred c--cC----Cc----cc-eeeccccCCCCeEEEeecCeEEEEEEECCCCeEEEEEeCCCcccCCCceeccCCCCCCceEE
Confidence 2 31 00 01 2245999999999999999999999843 22222 44421111111111111123599999
Q ss_pred EEEeccchh--ccCCHHHHH---HHHHHhcccCC--cceEEecc
Q psy13233 237 SLELKEEAS--DFLEVNTLK---DLIKKYSQFIN--FPIYIWSS 273 (704)
Q Consensus 237 ~L~Lked~~--e~l~~~~lk---~likkys~fi~--~PI~l~~~ 273 (704)
+......-. .-++.+.+. .-++..+-|++ .-|+++++
T Consensus 191 tF~PD~~iF~~~~fd~d~~~~l~kRl~elAa~Ln~GlkI~Lnde 234 (1135)
T PLN03128 191 TFKPDLAKFNMTRLDEDVVALMSKRVYDIAGCLGKKLKVELNGK 234 (1135)
T ss_pred EEEECHHHcCCCccChHHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 987544321 113444333 33334455774 67777654
No 64
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=95.64 E-value=0.019 Score=69.59 Aligned_cols=50 Identities=28% Similarity=0.386 Sum_probs=33.5
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEc---------------CCCcEEEEEeCCCCCCHHHHHHh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKAD---------------QENKMLHIIDSGIGMTKADLVKN 151 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d---------------~~~~~L~I~DNGiGMT~~eL~~~ 151 (704)
..|..||+||..++. ....+.|.+..+ .+.-.|.|.|||+||+.+++..-
T Consensus 563 qvl~NLl~NAik~~~--------------~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~i 627 (828)
T PRK13837 563 QVLMNLCSNAAQAMD--------------GAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHI 627 (828)
T ss_pred HHHHHHHHHHHHHcc--------------cCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHh
Confidence 357788888888752 123445555543 22236899999999999988743
No 65
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=95.59 E-value=0.019 Score=68.55 Aligned_cols=51 Identities=12% Similarity=0.221 Sum_probs=34.6
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNL 152 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~L 152 (704)
..|..||.||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++..-+
T Consensus 600 ~il~NLI~NAik~s~--------------~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IF 650 (703)
T TIGR03785 600 QMLDKLVDNAREFSP--------------EDGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLF 650 (703)
T ss_pred HHHHHHHHHHHHHCC--------------CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHh
Confidence 346677888777641 123355555555545579999999999999887544
No 66
>PRK09835 sensor kinase CusS; Provisional
Probab=95.55 E-value=0.02 Score=63.63 Aligned_cols=33 Identities=12% Similarity=0.246 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhh
Q psy13233 120 ELAIRIKADQENKMLHIIDSGIGMTKADLVKNL 152 (704)
Q Consensus 120 ~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~L 152 (704)
.+.|++..+.+.-.|+|.|||.||+.+++..-+
T Consensus 396 ~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if 428 (482)
T PRK09835 396 AITVRCQEVDHQVQLVVENPGTPIAPEHLPRLF 428 (482)
T ss_pred eEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHh
Confidence 355665555555679999999999999887433
No 67
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=95.46 E-value=0.024 Score=68.45 Aligned_cols=86 Identities=14% Similarity=0.284 Sum_probs=49.0
Q ss_pred hHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEc--CCC---cEEEEEeCCCCCCHHHHHHhhchhhccChhhH
Q psy13233 89 FLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKAD--QEN---KMLHIIDSGIGMTKADLVKNLGTIAKSGTAEF 163 (704)
Q Consensus 89 fLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d--~~~---~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f 163 (704)
.|..||+||..+.. ...+.|.+... .++ -.|+|.|||+||+.+++..-+-..-+..
T Consensus 412 vl~NLl~NAik~~~---------------~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~---- 472 (919)
T PRK11107 412 IITNLVGNAIKFTE---------------SGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQAD---- 472 (919)
T ss_pred HHHHHHHHHhhcCC---------------CCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCC----
Confidence 56788888877631 12344555432 222 2589999999999998875442111100
Q ss_pred HHhhhhhhcccccccccccccccceeeeeeec----CEEEEEEEe
Q psy13233 164 LSQMSDKENIKHDLNDMIGQFGVGFYSAFLVA----DKVLVTTKN 204 (704)
Q Consensus 164 ~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVA----dkV~V~Sk~ 204 (704)
.......|..|+|++-|--++ -++.|.|..
T Consensus 473 -----------~~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~ 506 (919)
T PRK11107 473 -----------ASISRRHGGTGLGLVITQKLVNEMGGDISFHSQP 506 (919)
T ss_pred -----------CCCCCCCCCcchhHHHHHHHHHHhCCEEEEEecC
Confidence 000123477899997665543 345555543
No 68
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=95.43 E-value=0.035 Score=67.25 Aligned_cols=166 Identities=18% Similarity=0.219 Sum_probs=91.9
Q ss_pred hhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHH-------HhhchhhccC
Q psy13233 87 EIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLV-------KNLGTIAKSG 159 (704)
Q Consensus 87 ~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~-------~~LgtIa~Sg 159 (704)
...+.|+|.||+|--.. +.+. .|.|.+++ ++.++|.|||-||.-+.-. +...|+..+|
T Consensus 131 hhLv~EIlDNSVDE~la------------G~~~--~I~V~i~~-DgsItV~DnGRGIPvd~h~k~g~s~~E~VlT~LhAG 195 (903)
T PTZ00109 131 HQLLFEILDNSVDEYLA------------GECN--KITVVLHK-DGSVEISDNGRGIPCDVSEKTGKSGLETVLTVLHSG 195 (903)
T ss_pred eEEEEEEeeccchhhcc------------CCCc--EEEEEEcC-CCeEEEEeCCccccccccccCCCcceeEEEEEeccC
Confidence 35788999999995210 1223 46666765 4689999999999764321 1222344444
Q ss_pred hhhHHHh---hhhhh---------------------------ccccccc-ccccccccceeeeeeecCEEEEEEEeCCCC
Q psy13233 160 TAEFLSQ---MSDKE---------------------------NIKHDLN-DMIGQFGVGFYSAFLVADKVLVTTKNNEDS 208 (704)
Q Consensus 160 t~~f~~~---l~~~~---------------------------~~~~d~~-~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~ 208 (704)
.+ |-.. +.... +...... -.-|..|||.-.+=.++.+++|.++..+ .
T Consensus 196 GK-F~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~SVVNALS~~l~VeV~RdG-K 273 (903)
T PTZ00109 196 GK-FQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGLSVVNALSSFLKVDVFKGG-K 273 (903)
T ss_pred cc-ccCcccccccccccccccccccccccccccccccccccccccCCcceecCcCCCcceeeeeeccCeEEEEEEECC-E
Confidence 22 3111 00000 0000001 2468999999999999999999998743 2
Q ss_pred cE--EEEecCCceEEEeCC-CCCC-CCCccEEEEEec-cchh-c-c--------------CCHHHHHHHHHHhcccCC--
Q psy13233 209 QY--IWESDASSFSIVNDP-RGDN-LKRGTQISLELK-EEAS-D-F--------------LEVNTLKDLIKKYSQFIN-- 265 (704)
Q Consensus 209 ~~--~Wes~gg~f~I~~~~-~~~~-~~~GT~I~L~Lk-ed~~-e-~--------------l~~~~lk~likkys~fi~-- 265 (704)
.| .|+ +| . .+.+.. .+.. ..+||+|+.... +.-. . . ++.+.|+.-++..+ |++
T Consensus 274 ~y~q~F~-rG-~-~v~pLkvig~~~~~tGT~VtF~PD~~~IF~~~~~~~~~~~~~~~~~~F~~d~L~~RLrElA-fLNpG 349 (903)
T PTZ00109 274 IYSIELS-KG-K-VTKPLSVFSCPLKKRGTTIHFLPDYKHIFKTHHQHTETEEEEGCKNGFNLDLIKNRIHELS-YLNPG 349 (903)
T ss_pred EEEEEeC-CC-c-ccCCccccCCcCCCCceEEEEEeCcchhcCccccccccccccccccccCHHHHHHHHHHHh-ccCCC
Confidence 22 232 23 1 111110 1122 369999998865 4321 1 1 25567777777666 444
Q ss_pred cceEEecc
Q psy13233 266 FPIYIWSS 273 (704)
Q Consensus 266 ~PI~l~~~ 273 (704)
.-|+++.+
T Consensus 350 L~I~L~De 357 (903)
T PTZ00109 350 LTFYLVDE 357 (903)
T ss_pred cEEEEEec
Confidence 56666543
No 69
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=95.36 E-value=0.08 Score=67.21 Aligned_cols=163 Identities=18% Similarity=0.261 Sum_probs=93.4
Q ss_pred hhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHH--------hhchhhcc
Q psy13233 87 EIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVK--------NLGTIAKS 158 (704)
Q Consensus 87 ~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~--------~LgtIa~S 158 (704)
.-.+.|+|-||+|-.. | ++ . ...--.|.|.++.+.+.|+|.|||-||.-+.-.+ .|+++..|
T Consensus 59 ~ki~dEIldNAvDe~~--r-----~~-~--~g~~~~I~V~i~~d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aG 128 (1388)
T PTZ00108 59 YKIFDEILVNAADNKA--R-----DK-G--GHRMTYIKVTIDEENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTS 128 (1388)
T ss_pred hhhHHHHhhhhhhhhc--c-----cC-C--CCCccEEEEEEeccCCeEEEEecCCcccCCCCCCCCCccceEEEEEeecc
Confidence 3577899999999742 1 10 0 1112357888887778999999999987542110 13333333
Q ss_pred ChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCC-CCcE--EEEecC---CceEEEeCCCCCCCCC
Q psy13233 159 GTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNE-DSQY--IWESDA---SSFSIVNDPRGDNLKR 232 (704)
Q Consensus 159 gt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~-d~~~--~Wes~g---g~f~I~~~~~~~~~~~ 232 (704)
|+ | ... .. .-.-|.-|||.-.+=.++.+++|++.... +..| .|+.+. ..-.|.. .....+
T Consensus 129 gk--f----dd~----~y-KvSGGlhGVGasvvNalS~~f~Vev~r~~~gk~y~q~f~~Gm~~~~~p~i~~---~~~~~~ 194 (1388)
T PTZ00108 129 SN--Y----DDT----EK-RVTGGRNGFGAKLTNIFSTKFTVECVDSKSGKKFKMTWTDNMSKKSEPRITS---YDGKKD 194 (1388)
T ss_pred cc--C----CCC----ce-eeecccccCCccccccccceEEEEEEECCCCCEEEEEecCCCcCCCCCccCC---CCCCCC
Confidence 32 2 110 11 23459999999999999999999999852 2323 565321 1112211 111168
Q ss_pred ccEEEEEeccchh--ccCCHHH---HHHHHHHhcccC-CcceEEecc
Q psy13233 233 GTQISLELKEEAS--DFLEVNT---LKDLIKKYSQFI-NFPIYIWSS 273 (704)
Q Consensus 233 GT~I~L~Lked~~--e~l~~~~---lk~likkys~fi-~~PI~l~~~ 273 (704)
||+|+......-. .-++.+. |..-++..+-.. ..-|+++++
T Consensus 195 GT~VtF~PD~~iF~~~~fd~d~~~ll~~Rl~dlA~ln~GLkI~lnde 241 (1388)
T PTZ00108 195 YTKVTFYPDYAKFGMTEFDDDMLRLLKKRVYDLAGCFGKLKVYLNGE 241 (1388)
T ss_pred ceEEEEEeCHHHcCCCccChHHHHHHHHHHHHHhcCCCCcEEEEeCc
Confidence 9999987554322 1235555 444444444333 366777654
No 70
>PRK10337 sensor protein QseC; Provisional
Probab=95.34 E-value=0.033 Score=61.59 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=30.8
Q ss_pred hHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhh
Q psy13233 89 FLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNL 152 (704)
Q Consensus 89 fLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~L 152 (704)
.++.||.||..+.. ....|.|.... ..|+|.|||.||+.+++...+
T Consensus 356 vl~Nli~NA~k~~~----------------~~~~i~i~~~~--~~i~i~D~G~Gi~~~~~~~if 401 (449)
T PRK10337 356 LVRNLLDNAIRYSP----------------QGSVVDVTLNA--RNFTVRDNGPGVTPEALARIG 401 (449)
T ss_pred HHHHHHHHHHhhCC----------------CCCeEEEEEEe--eEEEEEECCCCCCHHHHHHhc
Confidence 56777777766621 11235554432 379999999999999888544
No 71
>PRK10490 sensor protein KdpD; Provisional
Probab=95.27 E-value=0.027 Score=69.11 Aligned_cols=51 Identities=24% Similarity=0.290 Sum_probs=34.4
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNL 152 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~L 152 (704)
..|..||+||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++..-+
T Consensus 781 qVL~NLL~NAik~s~--------------~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IF 831 (895)
T PRK10490 781 RVLINLLENAVKYAG--------------AQAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIF 831 (895)
T ss_pred HHHHHHHHHHHHhCC--------------CCCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhc
Confidence 356788888876631 123345555555444578999999999999877443
No 72
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=95.21 E-value=0.032 Score=68.73 Aligned_cols=87 Identities=17% Similarity=0.300 Sum_probs=50.9
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQM 167 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l 167 (704)
-.|.-||+||..+.. ...+.|.+..+...-.|+|.|||+||+.+++..-+..-.+.+.
T Consensus 565 qvl~NLl~NAik~t~---------------~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~------- 622 (924)
T PRK10841 565 QVISNLLSNAIKFTD---------------TGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGT------- 622 (924)
T ss_pred HHHHHHHHHHHhhCC---------------CCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCCC-------
Confidence 357778888877621 1234555555544457899999999999988754422111000
Q ss_pred hhhhcccccccccccccccceeeeeeec----CEEEEEEEe
Q psy13233 168 SDKENIKHDLNDMIGQFGVGFYSAFLVA----DKVLVTTKN 204 (704)
Q Consensus 168 ~~~~~~~~d~~~~IGqFGIGFySaFmVA----dkV~V~Sk~ 204 (704)
.. ....+..|+|++-|-.++ -++.|.|..
T Consensus 623 -------~~-~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~~ 655 (924)
T PRK10841 623 -------GV-QRNFQGTGLGLAICEKLINMMDGDISVDSEP 655 (924)
T ss_pred -------CC-CCCCCCeehhHHHHHHHHHHCCCEEEEEEcC
Confidence 00 122356799997765443 345665543
No 73
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=95.06 E-value=0.047 Score=67.12 Aligned_cols=50 Identities=18% Similarity=0.308 Sum_probs=32.8
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCC---cEEEEEeCCCCCCHHHHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQEN---KMLHIIDSGIGMTKADLVKNL 152 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~---~~L~I~DNGiGMT~~eL~~~L 152 (704)
-.|.-||+||..+.. ...+.|.+...... -.|+|.|||+||+.+++.+-+
T Consensus 568 QVL~NLL~NAik~t~---------------~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IF 620 (894)
T PRK10618 568 KILLLLLNYAITTTA---------------YGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLH 620 (894)
T ss_pred HHHHHHHHHHHHhCC---------------CCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhc
Confidence 356778889887631 12344444433222 368999999999999988543
No 74
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=94.06 E-value=0.05 Score=63.05 Aligned_cols=52 Identities=27% Similarity=0.419 Sum_probs=37.2
Q ss_pred hHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhh
Q psy13233 89 FLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNL 152 (704)
Q Consensus 89 fLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~L 152 (704)
.|-=|||||.||+.- ...+.++|+...+.+.-.|+|.|||.|+..+-+..-|
T Consensus 501 VLvNLl~NALDA~~~------------~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lF 552 (603)
T COG4191 501 VLVNLLQNALDAMAG------------QEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLF 552 (603)
T ss_pred HHHHHHHHHHHHhcC------------CCCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhc
Confidence 344599999999852 0123455555556666789999999999999877544
No 75
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=94.04 E-value=0.16 Score=47.39 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=29.8
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCC
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMT 144 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT 144 (704)
..|.||++||..+. +. . .....+.|.+....+.-.|+|.|+|.||+
T Consensus 42 ~~l~eli~Nai~h~----~~---~----~~~~~I~v~~~~~~~~~~i~I~D~G~gi~ 87 (137)
T TIGR01925 42 TAVSEAVTNAIIHG----YE---E----NCEGVVYISATIEDHEVYITVRDEGIGIE 87 (137)
T ss_pred HHHHHHHHHHHHhc----cC---C----CCCcEEEEEEEEeCCEEEEEEEEcCCCcC
Confidence 46889999988541 11 0 11234555555555556789999999997
No 76
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=93.94 E-value=0.11 Score=65.33 Aligned_cols=50 Identities=24% Similarity=0.355 Sum_probs=32.5
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEE---cCCC--cEEEEEeCCCCCCHHHHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKA---DQEN--KMLHIIDSGIGMTKADLVKNL 152 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~---d~~~--~~L~I~DNGiGMT~~eL~~~L 152 (704)
-.|..||+||.++.. ...+.|.+.. +... -.|+|.|||+||+.+++..-+
T Consensus 831 qvl~NLl~NAik~~~---------------~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF 885 (1197)
T PRK09959 831 QVLSNLLSNALKFTT---------------EGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLF 885 (1197)
T ss_pred HHHHHHHHHHHHhCC---------------CCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhh
Confidence 467889999988842 1223444432 2222 247899999999999887443
No 77
>PRK03660 anti-sigma F factor; Provisional
Probab=93.72 E-value=0.18 Score=47.59 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=30.5
Q ss_pred hhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCH
Q psy13233 87 EIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTK 145 (704)
Q Consensus 87 ~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~ 145 (704)
...+.||+.||.... +. . .....+.|++....+.-.++|.|+|.||+.
T Consensus 41 ~~~l~eli~Nai~h~----~~---~----~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 41 KTAVSEAVTNAIIHG----YE---N----NPDGVVYIEVEIEEEELEITVRDEGKGIED 88 (146)
T ss_pred HHHHHHHHHHHHHHh----cC---C----CCCCEEEEEEEECCCEEEEEEEEccCCCCh
Confidence 356899999988542 11 0 011335555555544456899999999974
No 78
>PRK10547 chemotaxis protein CheA; Provisional
Probab=93.68 E-value=0.2 Score=59.81 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=33.3
Q ss_pred HHHhHHhHHHHHH----HHHhhcccCCCccCCCCCceEEEEEc--CCCcEEEEEeCCCCCCHHHHHH
Q psy13233 90 LRELISNASDALD----KIRLLSLTDASVLDANPELAIRIKAD--QENKMLHIIDSGIGMTKADLVK 150 (704)
Q Consensus 90 LRELIqNA~DA~~----k~r~~~ltd~~~~~~~~~l~I~I~~d--~~~~~L~I~DNGiGMT~~eL~~ 150 (704)
|..||.||.|+.- .|+. . +......|.|... .+.-.|+|.|+|.||+.+.+..
T Consensus 390 L~hLirNAidHgie~p~~R~~--~------gkp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~~ 448 (670)
T PRK10547 390 LTHLVRNSLDHGIELPEKRLA--A------GKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILA 448 (670)
T ss_pred HHHHHHHHHHhhccchhhHHh--c------CCCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHHH
Confidence 5689999999852 1111 1 1112234555543 3334689999999999988764
No 79
>PRK13557 histidine kinase; Provisional
Probab=93.60 E-value=0.13 Score=57.77 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=16.7
Q ss_pred EEEEEeCCCCCCHHHHHHhh
Q psy13233 133 MLHIIDSGIGMTKADLVKNL 152 (704)
Q Consensus 133 ~L~I~DNGiGMT~~eL~~~L 152 (704)
.|+|.|||.||+.+.+..-|
T Consensus 326 ~i~v~D~G~Gi~~~~~~~if 345 (540)
T PRK13557 326 SIAVTDTGSGMPPEILARVM 345 (540)
T ss_pred EEEEEcCCCCCCHHHHHhcc
Confidence 68999999999999877433
No 80
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=93.00 E-value=0.13 Score=52.22 Aligned_cols=48 Identities=27% Similarity=0.450 Sum_probs=34.8
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHH
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVK 150 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~ 150 (704)
..|..||+||.+|+. .+.+.|.+....+.-.|.|.|||.||+.+.+..
T Consensus 231 ~vl~nLi~NAi~~~~---------------~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~ 278 (336)
T COG0642 231 QVLVNLLSNAIKYTP---------------GGEITISVRQDDEQVTISVEDTGPGIPEEELER 278 (336)
T ss_pred HHHHHHHHHHhccCC---------------CCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHH
Confidence 478899999999952 233444544433336799999999999999553
No 81
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=92.94 E-value=0.15 Score=58.78 Aligned_cols=59 Identities=24% Similarity=0.332 Sum_probs=38.5
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhcc
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKS 158 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~S 158 (704)
..|.=||-||.||..+ . .....+.+.|..+.+.-.+.|.|||.||+++.....+ ..|.|
T Consensus 430 tIlGNLidNA~eA~~~------~-----~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iF-e~G~S 488 (537)
T COG3290 430 TILGNLIDNALEALLA------P-----EENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIF-EKGVS 488 (537)
T ss_pred HHHHHHHHHHHHHhhc------c-----CCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHH-hcCcc
Confidence 4556699999999752 1 1234445555554444567999999999998877332 34444
No 82
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=91.63 E-value=0.23 Score=48.49 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=36.3
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHH
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLV 149 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~ 149 (704)
..+.|++.||+....+ + .....+.|.+....+.-.+.|.|+|.||+...+.
T Consensus 45 lav~Ea~~Nai~Hg~~-------~----~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~ 95 (161)
T PRK04069 45 IAVSEACTNAVQHAYK-------E----DEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLK 95 (161)
T ss_pred HHHHHHHHHHHHhccC-------C----CCCCeEEEEEEEECCEEEEEEEECCcCCChHHhc
Confidence 4899999999988521 0 0123456666666556789999999999977654
No 83
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=91.49 E-value=0.23 Score=48.51 Aligned_cols=87 Identities=21% Similarity=0.250 Sum_probs=52.4
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQM 167 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l 167 (704)
..+.|++.||..+.-. + .....+.|.+..+.+.-.+.|.|+|.||+...+..-++. ...
T Consensus 45 lav~Ea~~Nai~ha~~-------~----~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~~---~~~------- 103 (159)
T TIGR01924 45 IAVSEACTNAVKHAYK-------E----GENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLGP---YDG------- 103 (159)
T ss_pred HHHHHHHHHHHHhccC-------C----CCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccCC---CCC-------
Confidence 4899999999887421 0 112345666666655567889999999987665421110 000
Q ss_pred hhhhcccccccccccccccceeeeeeecCEEEEEE
Q psy13233 168 SDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTT 202 (704)
Q Consensus 168 ~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~S 202 (704)
. .. ...-..-|.|++-+=-++|.|.+.+
T Consensus 104 --~----~~-~~~~~~~G~GL~Li~~L~D~v~~~~ 131 (159)
T TIGR01924 104 --S----EP-IDDLREGGLGLFLIETLMDEVEVYE 131 (159)
T ss_pred --C----CC-cccCCCCccCHHHHHHhccEEEEEe
Confidence 0 00 1111234788877777889888764
No 84
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=89.67 E-value=0.37 Score=55.81 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=27.7
Q ss_pred hHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHH
Q psy13233 89 FLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKA 146 (704)
Q Consensus 89 fLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~ 146 (704)
.++|+|+||..+- ....+.|.+..+.+.-.|+|.|||+||+.+
T Consensus 473 il~ell~NA~kha---------------~a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 473 IAREALSNALKHA---------------QASEVVVTVAQNQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHhC---------------CCCeEEEEEEEcCCEEEEEEEECCCCCCcc
Confidence 4677777765441 112355665555444578999999999864
No 85
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=89.56 E-value=0.82 Score=53.61 Aligned_cols=52 Identities=23% Similarity=0.486 Sum_probs=37.4
Q ss_pred HhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCc--EEEEEeCCCCCCHHHHHHhh
Q psy13233 92 ELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENK--MLHIIDSGIGMTKADLVKNL 152 (704)
Q Consensus 92 ELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~--~L~I~DNGiGMT~~eL~~~L 152 (704)
=||+||.+|++...... .+.-.|++..|..+. .+.|.|||.|++.+++.+.|
T Consensus 607 NliKNA~EAi~~~~~~e---------~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~ 660 (712)
T COG5000 607 NLLKNAAEAIEAVEAEE---------RRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRAL 660 (712)
T ss_pred HHHHhHHHHhhhccccc---------CCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhc
Confidence 38999999998753211 111257888765554 57899999999999888544
No 86
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=89.46 E-value=0.37 Score=52.68 Aligned_cols=47 Identities=19% Similarity=0.360 Sum_probs=36.9
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHH
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLV 149 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~ 149 (704)
-+++|.|+||.-.- ....+.|++..+.+.-.|+|.|||.|.+.+...
T Consensus 282 rivQEaltN~~rHa---------------~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~~ 328 (365)
T COG4585 282 RIVQEALTNAIRHA---------------QATEVRVTLERTDDELRLEVIDNGVGFDPDKEG 328 (365)
T ss_pred HHHHHHHHHHHhcc---------------CCceEEEEEEEcCCEEEEEEEECCcCCCccccC
Confidence 57899999987652 245677888887777889999999999977544
No 87
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=88.84 E-value=0.82 Score=47.38 Aligned_cols=48 Identities=23% Similarity=0.371 Sum_probs=33.2
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCC--cEEEEEeCCCCCCHH
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQEN--KMLHIIDSGIGMTKA 146 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~--~~L~I~DNGiGMT~~ 146 (704)
.++-||++||.-.. .+.. ....+.|.+..+.++ ..++|.|||.|+..+
T Consensus 125 liv~EL~tNa~Kha------f~~~-----~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 125 LIVHELVTNALKHA------FLSR-----PGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHHhc------CCCC-----CCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 56789999998663 1211 234555666666665 589999999999854
No 88
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=88.49 E-value=0.31 Score=56.02 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=27.4
Q ss_pred hHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHH
Q psy13233 89 FLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKA 146 (704)
Q Consensus 89 fLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~ 146 (704)
.++|++.||..+.. ...+.|++..+.+.-.|+|+|||.||+.+
T Consensus 414 il~nlL~NAiKha~---------------~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 414 VCQEGLNNIVKHAD---------------ASAVTLQGWQQDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHhCC---------------CCEEEEEEEEcCCEEEEEEEECCCCCCcC
Confidence 45677777765521 12345555554444579999999999754
No 89
>PRK13560 hypothetical protein; Provisional
Probab=87.94 E-value=0.48 Score=56.01 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=29.6
Q ss_pred hHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCC--C-cEEEEEeCCCCCCHH
Q psy13233 89 FLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQE--N-KMLHIIDSGIGMTKA 146 (704)
Q Consensus 89 fLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~--~-~~L~I~DNGiGMT~~ 146 (704)
.|.+|++||..+... ......|.|..... + -.|+|.|||+||+.+
T Consensus 715 il~NLl~NAik~~~~-------------~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 715 IISELLSNALKHAFP-------------DGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHHHHHHhhcc-------------CCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 678999999887421 11223455554322 2 468999999999864
No 90
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=87.19 E-value=0.55 Score=56.59 Aligned_cols=128 Identities=21% Similarity=0.248 Sum_probs=75.3
Q ss_pred hHHHhHHhHHHHH----HHHHhhcccCCCccCCCCCceEEEEEcCCCc--EEEEEeCCCCCCHHHHHHhhchhhccChhh
Q psy13233 89 FLRELISNASDAL----DKIRLLSLTDASVLDANPELAIRIKADQENK--MLHIIDSGIGMTKADLVKNLGTIAKSGTAE 162 (704)
Q Consensus 89 fLRELIqNA~DA~----~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~--~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~ 162 (704)
.|.=||=||.|.. +.|+. .+..+...|.+..-..++ .|+|+|+|-|++++-|...-..=|-- +.+
T Consensus 436 PL~HLvRNAvDHGIE~pE~R~a--------~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli-~~~ 506 (716)
T COG0643 436 PLTHLVRNAVDHGIETPEERRA--------AGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLI-TEE 506 (716)
T ss_pred cHHHHHhcchhccCCCHHHHHH--------cCCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCC-ChH
Confidence 4556788999985 22221 245667789998765554 47999999999999887532110000 010
Q ss_pred HHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCC---cEEEEecCCceEEEeCCCCCCCCCccEEEEE
Q psy13233 163 FLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDS---QYIWESDASSFSIVNDPRGDNLKRGTQISLE 239 (704)
Q Consensus 163 f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~---~~~Wes~gg~f~I~~~~~~~~~~~GT~I~L~ 239 (704)
=.+.|++. =-+.+=|...|.=|++|+=.|++.=+. .-..+.-||..+|... .+.||+++|.
T Consensus 507 ~a~~lSd~-----------Ei~~LIF~PGFSTa~~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~-----~G~GT~Fti~ 570 (716)
T COG0643 507 EAETLSDE-----------EILNLIFAPGFSTAEQVTDVSGRGVGMDVVKTNIEQLGGSISVSSE-----PGKGTTFTIR 570 (716)
T ss_pred HhccCCHH-----------HHHHHHhcCCCCcchhhhcccCCccCHHHHHHHHHHcCCEEEEEec-----CCCCeEEEEe
Confidence 00012211 011233777788888887666653111 1122333477777653 4899999999
Q ss_pred ec
Q psy13233 240 LK 241 (704)
Q Consensus 240 Lk 241 (704)
|-
T Consensus 571 LP 572 (716)
T COG0643 571 LP 572 (716)
T ss_pred cC
Confidence 86
No 91
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=87.13 E-value=0.81 Score=41.90 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=52.1
Q ss_pred hhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHh
Q psy13233 87 EIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQ 166 (704)
Q Consensus 87 ~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~ 166 (704)
..++.|++.||..+... . .....+.|++..+.+.-.|.|.|+|.|++...+.....
T Consensus 33 ~lav~E~~~Nav~H~~~------~-----~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~~------------- 88 (125)
T PF13581_consen 33 ELAVSEALTNAVEHGYP------G-----DPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPDP------------- 88 (125)
T ss_pred HHHHHHHHHHHHHHcCC------C-----CCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCccc-------------
Confidence 36889999999988531 0 11234566666777777899999999998775442110
Q ss_pred hhhhhcccccccccccccccceeeeeeecCEEEE
Q psy13233 167 MSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLV 200 (704)
Q Consensus 167 l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V 200 (704)
.. ......-|.|++=.-.++|++.+
T Consensus 89 --------~~-~~~~~~~G~Gl~li~~l~D~~~~ 113 (125)
T PF13581_consen 89 --------WE-PDSLREGGRGLFLIRSLMDEVDY 113 (125)
T ss_pred --------cc-CCCCCCCCcCHHHHHHHHcEEEE
Confidence 00 12234445666656667899888
No 92
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=86.95 E-value=1.2 Score=47.46 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=31.0
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCC------------CcEEEEEeCCCCCCHHHHHH
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQE------------NKMLHIIDSGIGMTKADLVK 150 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~------------~~~L~I~DNGiGMT~~eL~~ 150 (704)
..++.||+||..|+.. +...|.|..... .-.|.|.|||.||+.+.+..
T Consensus 240 ~vl~nLl~NA~~~~~~---------------~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~ 299 (348)
T PRK11073 240 QVLLNIVRNALQALGP---------------EGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDT 299 (348)
T ss_pred HHHHHHHHHHHHHhcc---------------CCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhh
Confidence 4578899999988621 112244332111 12589999999999987764
No 93
>KOG0787|consensus
Probab=86.28 E-value=2.4 Score=47.29 Aligned_cols=123 Identities=21% Similarity=0.259 Sum_probs=73.1
Q ss_pred hhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHh
Q psy13233 87 EIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQ 166 (704)
Q Consensus 87 ~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~ 166 (704)
...|-||.-||..|.=+..- .++ ..-+++.|.|..+.++-.+.|+|-|-|++..++.. |..-..|....
T Consensus 262 ~ymlfElfKNamrATve~h~---~~~---~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~dr-lf~Y~ySTa~~---- 330 (414)
T KOG0787|consen 262 YYMLFELFKNAMRATVEHHG---DDG---DELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDR-LFSYMYSTAPA---- 330 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhc---cCC---CCCCCeEEEEecCCcceEEEEecCCCCcChhHHHH-HHhhhcccCCC----
Confidence 46799999999999754211 111 12456777777778888999999999999998874 33444443211
Q ss_pred hhhhhcccccc-cccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCceEEEeCCCCCCCCCccEEEEEeccchh
Q psy13233 167 MSDKENIKHDL-NDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQISLELKEEAS 245 (704)
Q Consensus 167 l~~~~~~~~d~-~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f~I~~~~~~~~~~~GT~I~L~Lked~~ 245 (704)
+.. .+. ..+.--||.|+=-+=++|.- + +|...+... .+.||.+.+|||....
T Consensus 331 -~~~----d~~~~~plaGfG~GLPisrlYa~y--------------f---~Gdl~L~Sl-----eG~GTD~yI~Lk~ls~ 383 (414)
T KOG0787|consen 331 -PSS----DNNRTAPLAGFGFGLPISRLYARY--------------F---GGDLKLQSL-----EGIGTDVYIYLKALSM 383 (414)
T ss_pred -CCC----CCCCcCcccccccCCcHHHHHHHH--------------h---CCCeeEEee-----eccccceEEEeccCCc
Confidence 100 111 34556677776211111110 0 133333322 3799999999997655
Q ss_pred cc
Q psy13233 246 DF 247 (704)
Q Consensus 246 e~ 247 (704)
++
T Consensus 384 ~~ 385 (414)
T KOG0787|consen 384 EA 385 (414)
T ss_pred cc
Confidence 43
No 94
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=81.61 E-value=2 Score=49.82 Aligned_cols=43 Identities=26% Similarity=0.485 Sum_probs=32.2
Q ss_pred hHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHH
Q psy13233 89 FLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKA 146 (704)
Q Consensus 89 fLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~ 146 (704)
.+||-++||.-.- ....+.|.+......-+++|+|||+|++..
T Consensus 485 IvREAlsNa~KHa---------------~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 485 IVREALSNAIKHA---------------QASEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred HHHHHHHHHHHhc---------------ccCeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 5799999987552 234566777776666789999999998754
No 95
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=79.16 E-value=4.7 Score=39.27 Aligned_cols=82 Identities=26% Similarity=0.375 Sum_probs=51.6
Q ss_pred hhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHh
Q psy13233 87 EIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQ 166 (704)
Q Consensus 87 ~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~ 166 (704)
.+++-|++.||..+--+ .+| ....+.|.+..+.+.-.++|.|.|.|+. ++...++--
T Consensus 42 ~~av~E~~~N~v~Ha~~------~~~----~~g~I~i~~~~~~~~~~i~i~D~G~~~~--~~~~~~~~~----------- 98 (146)
T COG2172 42 AIAVSEALTNAVKHAYK------LDP----SEGEIRIEVSLDDGKLEIRIWDQGPGIE--DLEESLGPG----------- 98 (146)
T ss_pred HHHHHHHHHHHHHHHhh------cCC----CCceEEEEEEEcCCeEEEEEEeCCCCCC--CHHHhcCCC-----------
Confidence 47899999999988532 111 1245667777777778899999997765 444333211
Q ss_pred hhhhhccccccccccccc---ccceeeeeeecCEEEEEE
Q psy13233 167 MSDKENIKHDLNDMIGQF---GVGFYSAFLVADKVLVTT 202 (704)
Q Consensus 167 l~~~~~~~~d~~~~IGqF---GIGFySaFmVAdkV~V~S 202 (704)
....+.- |.||+-+=-++|+|.+..
T Consensus 99 -----------~~~~~~~~~~G~Gl~l~~~~~D~~~~~~ 126 (146)
T COG2172 99 -----------DTTAEGLQEGGLGLFLAKRLMDEFSYER 126 (146)
T ss_pred -----------CCCCcccccccccHHHHhhhheeEEEEe
Confidence 1122222 666665555778877764
No 96
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=74.93 E-value=3.8 Score=46.79 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=16.5
Q ss_pred ceEEEEEc-CCCcEEEEEeCCCCCCH
Q psy13233 121 LAIRIKAD-QENKMLHIIDSGIGMTK 145 (704)
Q Consensus 121 l~I~I~~d-~~~~~L~I~DNGiGMT~ 145 (704)
+.|.+..+ ...-.|.|.|||+||+.
T Consensus 492 i~i~~~~~~~~~~~i~V~D~G~Gi~~ 517 (565)
T PRK10935 492 IAVSCVTNPDGEHTVSIRDDGIGIGE 517 (565)
T ss_pred EEEEEEEcCCCEEEEEEEECCcCcCC
Confidence 44444444 22346899999999984
No 97
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=72.71 E-value=15 Score=40.75 Aligned_cols=57 Identities=14% Similarity=0.259 Sum_probs=38.5
Q ss_pred CCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHH
Q psy13233 82 LYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLV 149 (704)
Q Consensus 82 LYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~ 149 (704)
|-+...+.|.-.+|-|.-.+++. .....+.|.+.-+.+.-+++|+|||.|++-.++.
T Consensus 352 l~~e~~talyRv~QEaltNIErH-----------a~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~~ 408 (459)
T COG4564 352 LKPEVATALYRVVQEALTNIERH-----------AGATRVTILLQQMGDMVQLMVRDNGVGFSVKEAL 408 (459)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhh-----------cCCeEEEEEeccCCcceEEEEecCCCCccchhhc
Confidence 44445567777888888888742 1223345555555566789999999999876655
No 98
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=72.42 E-value=7.1 Score=44.82 Aligned_cols=47 Identities=32% Similarity=0.239 Sum_probs=34.8
Q ss_pred hHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCC---CcEEEEEeCCCCCCHHHHHH
Q psy13233 89 FLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQE---NKMLHIIDSGIGMTKADLVK 150 (704)
Q Consensus 89 fLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~---~~~L~I~DNGiGMT~~eL~~ 150 (704)
.|--||-||+|||.. ..+.|.+.++.+ .-.|-|.|||-|...+-+.+
T Consensus 568 VlvNl~~NaldA~~h---------------~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dk 617 (673)
T COG4192 568 VLVNLIVNALDASTH---------------FAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDK 617 (673)
T ss_pred HHHHHHHHHHhhhcc---------------CCceEEEEeecCcccceEEEEecCCCCCchhHHHH
Confidence 456789999999852 236788887653 35789999999998765554
No 99
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=71.37 E-value=4.9 Score=47.59 Aligned_cols=66 Identities=21% Similarity=0.395 Sum_probs=40.1
Q ss_pred ceEEEEE--cCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHhhhhhhcccccccccccccccceeeeeeecC--
Q psy13233 121 LAIRIKA--DQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVAD-- 196 (704)
Q Consensus 121 l~I~I~~--d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAd-- 196 (704)
..|.|.. -++..++.|.|||+|++.+-+.+-|. |-.- +. .....-| -|+|.+=|--++.
T Consensus 657 ~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~-iFqR--------l~-------s~~~y~g-tG~GL~I~kkI~e~H 719 (750)
T COG4251 657 PDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFV-IFQR--------LH-------SRDEYLG-TGLGLAICKKIAERH 719 (750)
T ss_pred CceEEeeeccCCceEEEecCCCCCcCHHHHHHHHH-HHHh--------cC-------chhhhcC-CCccHHHHHHHHHHh
Confidence 4566664 35568899999999999987775442 2211 11 1123445 8999876655532
Q ss_pred --EEEEEEE
Q psy13233 197 --KVLVTTK 203 (704)
Q Consensus 197 --kV~V~Sk 203 (704)
++.|.|+
T Consensus 720 ~G~i~vEs~ 728 (750)
T COG4251 720 QGRIWVEST 728 (750)
T ss_pred CceEEEeec
Confidence 3445554
No 100
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=69.87 E-value=5.1 Score=44.60 Aligned_cols=54 Identities=26% Similarity=0.398 Sum_probs=35.5
Q ss_pred ceEEEEEcCCC--cEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHhhhhhhccccccccccccccccee
Q psy13233 121 LAIRIKADQEN--KMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFY 189 (704)
Q Consensus 121 l~I~I~~d~~~--~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFy 189 (704)
.+|.+...... -.++|.|+|+|++++++.+-|-..-+-.++ +....|--|+|++
T Consensus 362 g~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkA---------------RsR~~gGTGLGLa 417 (459)
T COG5002 362 GRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRVDKA---------------RSRKMGGTGLGLA 417 (459)
T ss_pred CeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhh---------------hhhcCCCCchhHH
Confidence 45666665444 458999999999999999766443322111 1335578888885
No 101
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=69.79 E-value=12 Score=42.72 Aligned_cols=55 Identities=24% Similarity=0.339 Sum_probs=39.3
Q ss_pred CCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCC--cEEEEEeCCCCCCHHHHH
Q psy13233 83 YRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQEN--KMLHIIDSGIGMTKADLV 149 (704)
Q Consensus 83 Ys~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~--~~L~I~DNGiGMT~~eL~ 149 (704)
+-+|-..|-=||-||.-|+-+. ..+...|.|..-..+ -.+.|.|||+||++.-+.
T Consensus 348 l~~p~l~lqpLvENAi~hgi~~------------~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~ 404 (456)
T COG2972 348 LIDPKLVLQPLVENAIEHGIEP------------KRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLE 404 (456)
T ss_pred ccCchHHHhHHHHHHHHHhccc------------CCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHH
Confidence 5577788888999999997431 234456666653333 467999999999987666
No 102
>PRK13559 hypothetical protein; Provisional
Probab=67.48 E-value=5 Score=43.13 Aligned_cols=44 Identities=23% Similarity=0.127 Sum_probs=25.8
Q ss_pred hHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEE--cCC--CcEEEEEeCCCCCCH
Q psy13233 89 FLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKA--DQE--NKMLHIIDSGIGMTK 145 (704)
Q Consensus 89 fLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~--d~~--~~~L~I~DNGiGMT~ 145 (704)
.|.|||.||..+.. ++ .....|+|.+ ... .-.|.|.|||.||..
T Consensus 271 vl~nLi~NA~k~~~------~~-------~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~ 318 (361)
T PRK13559 271 VLHELAVNAIKHGA------LS-------ADQGRISISWKPSPEGAGFRIDWQEQGGPTPP 318 (361)
T ss_pred HHHHHHHhHHHhcc------cc-------CCCcEEEEEEEecCCCCeEEEEEECCCCCCCC
Confidence 66788888866521 11 1223455544 322 346788999999654
No 103
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=64.89 E-value=17 Score=44.50 Aligned_cols=37 Identities=24% Similarity=0.507 Sum_probs=29.7
Q ss_pred CCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhch
Q psy13233 118 NPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGT 154 (704)
Q Consensus 118 ~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~Lgt 154 (704)
..++.|.+..+.++-.+.|.|+|-|++.+++..-|-.
T Consensus 794 ~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~ 830 (890)
T COG2205 794 GSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDK 830 (890)
T ss_pred CCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhh
Confidence 4456777777777778999999999999999976644
No 104
>KOG1845|consensus
Probab=61.82 E-value=4.3 Score=49.18 Aligned_cols=95 Identities=27% Similarity=0.343 Sum_probs=55.2
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEE--EcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHH
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIK--ADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLS 165 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~--~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~ 165 (704)
-.+-|||.||+|-+-.++- .. .+..-.+..+|.|. .=...+ |.|+|.||..+-+...+.....+-+ +
T Consensus 149 ~a~aeLldnalDEi~~~~t--f~--~vd~I~p~~d~~i~a~~v~~~~---~s~~gg~~~~~~i~~~m~l~~~~k~-e--- 217 (775)
T KOG1845|consen 149 GAIAELLDNALDEITNGAT--FV--RVDYINPVMDIFIRALVVQLKR---ISDDGGGMKPEVIRKCMSLGYSSKK-E--- 217 (775)
T ss_pred Chhhhhccccccccccccc--eE--EeeeecccccccceeEEeeccc---eeccccccCHHHHHHHHHhhhhhhh-h---
Confidence 4688999999998753210 00 00011122222111 101111 6789999999998887754443321 1
Q ss_pred hhhhhhcccccccccccccccceeeeee-ecCEEEEEEEe
Q psy13233 166 QMSDKENIKHDLNDMIGQFGVGFYSAFL-VADKVLVTTKN 204 (704)
Q Consensus 166 ~l~~~~~~~~d~~~~IGqFGIGFySaFm-VAdkV~V~Sk~ 204 (704)
...-+||+|.||.++-| ++-.+.|.+|.
T Consensus 218 -----------~~~tv~q~~~gfktst~rlGa~~i~~~R~ 246 (775)
T KOG1845|consen 218 -----------ANSTVGQYGNGFKTSTMRLGADAIVFSRC 246 (775)
T ss_pred -----------hhhhhhhhccccccchhhhccceeEeehh
Confidence 14678999999988866 56666677773
No 105
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=36.87 E-value=46 Score=38.60 Aligned_cols=81 Identities=27% Similarity=0.350 Sum_probs=49.4
Q ss_pred CCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCC---CCCCHHHHHHhhchhhcc
Q psy13233 82 LYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSG---IGMTKADLVKNLGTIAKS 158 (704)
Q Consensus 82 LYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNG---iGMT~~eL~~~LgtIa~S 158 (704)
.+.-|..+|||+|.||.=.-+ | +.+ +..+.|.|.. ..|.|+-.| .|||.+++.++ +|
T Consensus 267 v~dyP~~alREai~NAv~HRD---Y---s~~-----~~~v~I~iyd----DRieI~NPGgl~~gi~~~~l~~~-----~s 326 (467)
T COG2865 267 VWDYPLEALREAIINAVIHRD---Y---SIR-----GRNVHIEIYD----DRIEITNPGGLPPGITPEDLLKG-----RS 326 (467)
T ss_pred cccCCHHHHHHHHHHHHHhhc---c---ccC-----CCceEEEEEC----CeEEEECCCCCCCCCChhHcccC-----CC
Confidence 344577899999999985522 2 211 2245555543 469999877 59999998854 23
Q ss_pred Chhh-HHHhhhhhhccccccccccccccccee
Q psy13233 159 GTAE-FLSQMSDKENIKHDLNDMIGQFGVGFY 189 (704)
Q Consensus 159 gt~~-f~~~l~~~~~~~~d~~~~IGqFGIGFy 189 (704)
-.+. .+..+= .+ ..+|=+.|.|+-
T Consensus 327 ~~RNp~LA~~l------~~-~~liE~~GSGi~ 351 (467)
T COG2865 327 KSRNPVLAKVL------RD-MGLIEERGSGIR 351 (467)
T ss_pred cccCHHHHHHH------HH-hhhHHHhCccHH
Confidence 2221 121111 12 578888888883
No 106
>KOG1845|consensus
Probab=34.51 E-value=29 Score=42.46 Aligned_cols=19 Identities=32% Similarity=0.667 Sum_probs=16.1
Q ss_pred EEEEeCCCCCCHHHHHHhh
Q psy13233 134 LHIIDSGIGMTKADLVKNL 152 (704)
Q Consensus 134 L~I~DNGiGMT~~eL~~~L 152 (704)
|+..|+|.||+.+++...+
T Consensus 2 l~~~Ddg~Gms~d~a~~~~ 20 (775)
T KOG1845|consen 2 LCFLDDGLGMSPDEAPKAI 20 (775)
T ss_pred cccccCCCCcCchhhhhhh
Confidence 6789999999999988543
No 107
>KOG0355|consensus
Probab=33.38 E-value=1e+02 Score=38.02 Aligned_cols=123 Identities=21% Similarity=0.315 Sum_probs=67.8
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHH--------HhhchhhccC
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLV--------KNLGTIAKSG 159 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~--------~~LgtIa~Sg 159 (704)
-..-|.+-||.| +.| ||+. -.|.+.+|++.+.+.|.+||-|+.-.... -.+|....|+
T Consensus 56 ki~dEilvNaad---k~r-----d~~m------~~i~v~i~~e~~~isv~nnGkGIPv~~H~~ek~yvpelifg~Lltss 121 (842)
T KOG0355|consen 56 KIFDEILVNAAD---KQR-----DPKM------NTIKVTIDKEKNEISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTSS 121 (842)
T ss_pred HHHHHHhhcccc---ccc-----CCCc------ceeEEEEccCCCEEEEEeCCCcceeeecccccccchHHHHhhhhhcc
Confidence 345799999999 222 3221 25888899999999999999998654322 1234444443
Q ss_pred hhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCC---CcEEEEecC---CceEEEeCCCCCCCCCc
Q psy13233 160 TAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNED---SQYIWESDA---SSFSIVNDPRGDNLKRG 233 (704)
Q Consensus 160 t~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d---~~~~Wes~g---g~f~I~~~~~~~~~~~G 233 (704)
. | ... .+.-.-|+-|.|-.=|=.++-+..|.|..... ....|..+- ..-.+.... .+.+
T Consensus 122 n--y----~d~-----ekK~tggrngygakLcniFs~~f~~Et~d~~~~~~~kQ~w~~nm~~~~~~~i~~~~----~~~y 186 (842)
T KOG0355|consen 122 N--Y----DDD-----EKKVTGGRNGYGAKLCNIFSTEFTVETADREYKMAFKQTWINNMTRDEEPKIVPST----DEDY 186 (842)
T ss_pred c--c----CCC-----ccccccCCCccceeeeeeccccceeeeeehHhHHHHHHhhhcCCcccCCceeecCC----CCCc
Confidence 2 1 000 00122355566655555556665565544321 234676432 233344321 1339
Q ss_pred cEEEEE
Q psy13233 234 TQISLE 239 (704)
Q Consensus 234 T~I~L~ 239 (704)
|+|++.
T Consensus 187 TkitF~ 192 (842)
T KOG0355|consen 187 TKITFS 192 (842)
T ss_pred ceEEeC
Confidence 999976
No 108
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=30.42 E-value=66 Score=36.34 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=20.1
Q ss_pred CCceEEEEEcCCCcEEEEEeCCCCCC
Q psy13233 119 PELAIRIKADQENKMLHIIDSGIGMT 144 (704)
Q Consensus 119 ~~l~I~I~~d~~~~~L~I~DNGiGMT 144 (704)
..+.|.+..+.+.-.+.|.|||+|+.
T Consensus 429 S~V~i~l~~~~e~l~Lei~DdG~Gl~ 454 (497)
T COG3851 429 SAVTIQLWQQDERLMLEIEDDGSGLP 454 (497)
T ss_pred ceEEEEEeeCCcEEEEEEecCCcCCC
Confidence 45667767766667899999999976
No 109
>PRK03094 hypothetical protein; Provisional
Probab=28.47 E-value=31 Score=30.73 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=23.7
Q ss_pred ChHHHHHHHcCceEEEec-----cchhHHHhhcc
Q psy13233 493 SPFVERLLRKGYEILYLV-----EAVDEYTLSSL 521 (704)
Q Consensus 493 SP~lE~~k~kG~EVL~l~-----dpIDe~~i~~l 521 (704)
|+.-+.|+++||+|.-|. +++|..+++..
T Consensus 11 s~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~ 44 (80)
T PRK03094 11 TDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQ 44 (80)
T ss_pred HHHHHHHHHCCCEEEecCcccccCCcCEEEEeCC
Confidence 466789999999999885 45888888776
No 110
>smart00751 BSD domain in transcription factors and synapse-associated proteins.
Probab=23.79 E-value=41 Score=26.81 Aligned_cols=33 Identities=33% Similarity=0.611 Sum_probs=23.6
Q ss_pred HHHHhhChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHhhh
Q psy13233 602 RETLQQHKLLKVIRKKLIRKALDMFKKLDPETYKKFWAEYST 643 (704)
Q Consensus 602 r~ile~h~iI~~l~~~i~~~~~d~~~~l~~e~~~~~~~~~~~ 643 (704)
..+++++|.++.+...+|-+.+. ++.||..|=.
T Consensus 13 ~~il~~~p~l~~~~~~lVP~~~s---------e~~FW~ryF~ 45 (51)
T smart00751 13 ESLLKENPLLKKLYNELVPKVLS---------EEEFWARYFY 45 (51)
T ss_pred HHHHHHCHHHHHHHHHHCCCCCC---------HHHHHHHHHH
Confidence 36788999998888876644322 5779988744
Done!