Query psy13233
Match_columns 704
No_of_seqs 358 out of 2161
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 23:31:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13233.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13233hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cg9_A ATP-dependent molecular 100.0 1E-126 3E-131 1093.3 32.2 587 62-664 3-673 (677)
2 2o1u_A Endoplasmin; GRP94, HSP 100.0 1E-114 4E-119 993.0 39.3 551 61-664 21-656 (666)
3 2ioq_A Chaperone protein HTPG; 100.0 3E-110 1E-114 953.5 34.1 532 62-664 4-623 (624)
4 1y4s_A Chaperone protein HTPG; 100.0 7E-108 2E-112 924.2 28.8 484 62-605 4-555 (559)
5 3hjc_A Heat shock protein 83-1 100.0 1E-71 3.4E-76 612.1 22.1 330 325-665 11-420 (444)
6 3q6m_A Heat shock protein HSP 100.0 4.8E-71 1.6E-75 604.8 18.9 323 332-665 2-404 (448)
7 2cge_A ATP-dependent molecular 100.0 5.6E-68 1.9E-72 579.3 18.3 321 333-664 1-401 (405)
8 3peh_A Endoplasmin homolog; st 100.0 1.1E-66 3.7E-71 543.1 21.4 265 55-331 16-281 (281)
9 1hk7_A Heat shock protein HSP8 100.0 1.6E-62 5.6E-67 511.5 15.4 227 333-561 1-287 (288)
10 3pry_A Heat shock protein HSP 100.0 2.5E-61 8.5E-66 498.7 16.2 211 331-542 1-264 (268)
11 2gq0_A Chaperone protein HTPG; 100.0 6.1E-61 2.1E-65 502.8 17.1 233 333-584 2-292 (303)
12 1qy5_A Endoplasmin; GRP94, NEC 100.0 1E-60 3.5E-65 497.7 18.5 266 60-331 3-269 (269)
13 1usu_A Heat shock protein HSP8 100.0 2.1E-60 7.2E-65 490.3 13.7 204 331-535 1-257 (260)
14 3ied_A Heat shock protein; HSP 100.0 2.7E-59 9.3E-64 479.6 17.1 207 60-272 22-271 (272)
15 3nmq_A Heat shock protein HSP 100.0 3.3E-58 1.1E-62 470.4 20.4 212 61-278 15-227 (239)
16 1y6z_A Heat shock protein, put 100.0 9.5E-58 3.2E-62 472.6 14.3 206 331-536 1-263 (263)
17 3o0i_A HSP90AA1 protein; HSP90 100.0 2.6E-53 8.7E-58 438.2 20.3 217 60-282 35-252 (256)
18 3t0h_A Heat shock protein HSP 100.0 2.2E-51 7.4E-56 418.5 21.0 216 60-281 7-223 (228)
19 2gqp_A Endoplasmin; GRP94, HSP 100.0 1E-50 3.5E-55 415.5 19.8 214 59-273 6-220 (236)
20 1yc1_A HSP 86, heat shock prot 100.0 4.2E-47 1.5E-51 394.5 20.6 212 61-278 44-256 (264)
21 2wer_A ATP-dependent molecular 100.0 6.6E-47 2.3E-51 382.8 20.8 210 62-276 3-213 (220)
22 2ior_A Chaperone protein HTPG; 100.0 6E-42 2.1E-46 350.2 18.3 206 61-272 23-232 (235)
23 1hk7_A Heat shock protein HSP8 100.0 3.1E-33 1.1E-37 291.5 7.8 142 562-703 68-212 (288)
24 1usu_A Heat shock protein HSP8 100.0 4.4E-33 1.5E-37 287.2 4.9 143 561-703 69-214 (260)
25 3pry_A Heat shock protein HSP 100.0 7.9E-33 2.7E-37 286.1 5.6 143 561-703 69-214 (268)
26 2gq0_A Chaperone protein HTPG; 100.0 3.1E-32 1E-36 285.8 8.8 143 561-703 67-215 (303)
27 1y6z_A Heat shock protein, put 100.0 2.8E-32 9.7E-37 282.3 6.9 142 561-702 71-216 (263)
28 3hjc_A Heat shock protein 83-1 100.0 4.5E-31 1.5E-35 290.2 9.2 142 561-702 85-229 (444)
29 3q6m_A Heat shock protein HSP 100.0 4.2E-31 1.4E-35 289.6 7.2 143 561-703 69-214 (448)
30 2cge_A ATP-dependent molecular 100.0 5.5E-31 1.9E-35 287.8 6.2 142 562-703 68-212 (405)
31 2cg9_A ATP-dependent molecular 100.0 7.7E-30 2.6E-34 293.0 4.7 143 561-703 339-484 (677)
32 2o1u_A Endoplasmin; GRP94, HSP 99.9 1E-27 3.5E-32 275.3 8.2 142 562-703 320-463 (666)
33 1y4s_A Chaperone protein HTPG; 99.9 2.7E-27 9.2E-32 267.8 5.6 142 562-703 296-443 (559)
34 2ioq_A Chaperone protein HTPG; 99.9 5.1E-27 1.7E-31 268.5 6.2 141 562-702 296-442 (624)
35 1b63_A MUTL; DNA mismatch repa 99.6 2.4E-15 8.4E-20 160.7 12.3 150 82-263 21-183 (333)
36 1h7s_A PMS1 protein homolog 2; 99.5 1.1E-14 3.9E-19 157.5 8.9 164 71-265 15-196 (365)
37 3h4l_A DNA mismatch repair pro 99.4 1.3E-13 4.4E-18 149.4 6.7 149 82-264 22-185 (367)
38 3na3_A DNA mismatch repair pro 99.3 3.1E-12 1.1E-16 137.6 7.2 147 83-264 26-188 (348)
39 3fv5_A DNA topoisomerase 4 sub 98.9 2.9E-09 9.8E-14 106.4 9.4 160 85-271 17-189 (201)
40 1mu5_A Type II DNA topoisomera 98.8 5.1E-09 1.7E-13 116.9 6.3 146 88-261 35-196 (471)
41 1kij_A DNA gyrase subunit B; t 98.7 8.7E-09 3E-13 112.5 6.3 156 87-271 34-204 (390)
42 2zbk_B Type 2 DNA topoisomeras 98.7 1.4E-08 4.8E-13 114.8 7.5 156 88-271 34-206 (530)
43 1sf8_A Chaperone protein HTPG; 98.6 1.1E-08 3.7E-13 95.3 3.4 93 552-664 13-125 (126)
44 1s16_A Topoisomerase IV subuni 98.5 2.8E-07 9.5E-12 100.7 9.9 156 87-271 33-203 (390)
45 2q2e_B Type 2 DNA topoisomeras 98.5 7.1E-08 2.4E-12 110.9 4.4 153 88-271 40-211 (621)
46 3cwv_A DNA gyrase, B subunit, 98.4 1.2E-06 4.2E-11 94.9 11.6 151 87-271 32-193 (369)
47 4duh_A DNA gyrase subunit B; s 98.3 1.6E-06 5.4E-11 87.9 10.0 151 87-272 37-207 (220)
48 1zxm_A TOPO IIA ATPase, DNA to 98.3 1.1E-06 3.6E-11 96.4 9.3 161 87-271 54-230 (400)
49 1ei1_A DNA gyrase B, GYRB; ATP 98.3 7.7E-07 2.6E-11 97.2 7.5 153 86-271 35-205 (391)
50 4emv_A DNA topoisomerase IV, B 98.3 2.2E-06 7.5E-11 87.1 9.8 155 88-272 43-213 (226)
51 3lnu_A Topoisomerase IV subuni 97.9 2.3E-05 8E-10 85.9 10.1 157 85-271 50-222 (408)
52 3ttz_A DNA gyrase subunit B; p 97.8 4.7E-05 1.6E-09 75.8 9.6 136 87-272 33-180 (198)
53 1pvg_A DNA topoisomerase II; G 97.5 0.0003 1E-08 77.5 9.8 129 88-243 67-209 (418)
54 1i58_A Chemotaxis protein CHEA 97.3 0.00013 4.6E-09 69.5 4.4 55 90-149 52-109 (189)
55 2btz_A Pyruvate dehydrogenase 97.2 0.00026 8.8E-09 76.2 6.1 116 88-242 234-349 (394)
56 3jz3_A Sensor protein QSEC; he 97.2 0.0001 3.5E-09 70.9 2.6 97 88-242 120-216 (222)
57 1id0_A PHOQ histidine kinase; 97.2 0.00018 6.2E-09 65.6 4.1 47 88-150 47-93 (152)
58 4ew8_A Sensor protein DIVL; si 97.2 0.00019 6.6E-09 71.5 4.6 49 88-150 158-206 (268)
59 1ysr_A Sensor-type histidine k 97.2 0.00024 8.3E-09 64.9 4.2 50 88-152 49-98 (150)
60 3sl2_A Sensor histidine kinase 97.2 8.4E-05 2.9E-09 70.1 1.1 103 88-241 46-150 (177)
61 2e0a_A Pyruvate dehydrogenase 97.1 0.00029 9.9E-09 75.9 4.9 117 88-242 233-349 (394)
62 3d36_A Sporulation kinase B; G 97.1 0.00027 9.4E-09 68.9 4.2 51 88-152 126-176 (244)
63 2q8g_A [pyruvate dehydrogenase 97.1 0.00033 1.1E-08 75.8 4.9 117 88-242 246-362 (407)
64 1y8o_A [pyruvate dehydrogenase 97.1 0.00029 1E-08 76.7 4.4 118 88-242 256-373 (419)
65 3a0y_A Sensor protein; ATP-LID 97.1 0.00023 7.9E-09 64.6 3.0 49 88-150 50-98 (152)
66 1th8_A Anti-sigma F factor; SP 97.0 0.00053 1.8E-08 62.7 4.9 83 88-202 42-124 (145)
67 2c2a_A Sensor histidine kinase 96.9 0.00017 5.8E-09 71.9 0.7 52 88-152 141-194 (258)
68 1gkz_A [3-methyl-2-oxobutanoat 96.9 0.00039 1.3E-08 74.6 3.3 57 88-150 241-297 (388)
69 1bxd_A ENVZ(290-450), protein 96.9 0.00032 1.1E-08 64.9 2.2 47 88-150 50-96 (161)
70 1b3q_A Protein (chemotaxis pro 96.5 0.0018 6.1E-08 69.8 4.6 52 90-149 111-168 (379)
71 4gfh_A DNA topoisomerase 2; to 96.4 0.0081 2.8E-07 73.7 10.6 143 88-260 62-223 (1177)
72 3ehg_A Sensor kinase (YOCF pro 95.8 0.0096 3.3E-07 53.2 5.2 45 89-148 44-88 (128)
73 3ehh_A Sensor kinase (YOCF pro 95.6 0.011 3.8E-07 56.8 5.2 45 89-148 134-178 (218)
74 3zxq_A Hypoxia sensor histidin 95.2 0.0095 3.3E-07 52.4 3.0 43 89-147 43-85 (124)
75 1r62_A Nitrogen regulation pro 94.9 0.013 4.5E-07 53.1 3.2 51 88-151 51-111 (160)
76 3zxo_A Redox sensor histidine 94.8 0.0082 2.8E-07 53.1 1.3 44 88-147 46-89 (129)
77 3a0r_A Sensor protein; four he 93.9 0.026 9E-07 57.8 3.1 47 89-149 248-294 (349)
78 4fpp_A Phosphotransferase; fou 86.8 0.45 1.5E-05 47.5 4.1 31 119-149 166-198 (247)
79 3ke6_A Protein RV1364C/MT1410; 70.2 4.3 0.00015 43.6 5.4 49 87-146 299-348 (399)
80 1ixm_A SPO0B, protein (sporula 67.0 5.2 0.00018 39.2 4.7 54 88-149 108-163 (192)
No 1
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-126 Score=1093.32 Aligned_cols=587 Identities=43% Similarity=0.710 Sum_probs=469.6
Q ss_pred ccccchHhhHHHHHHHHHhcCCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCC
Q psy13233 62 AESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGI 141 (704)
Q Consensus 62 ~e~~~Fqaev~~Ll~LL~~sLYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGi 141 (704)
.|+|.||||+++||+||+++||||+++|||||||||+||++++||+++++|++++..+++.|+|.+|+++++|+|+|||+
T Consensus 3 ~e~~~Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~~~I~I~DnGi 82 (677)
T 2cg9_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGI 82 (677)
T ss_dssp CEEEECCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSC
T ss_pred ccceehhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCCCEEEEEECCC
Confidence 47899999999999999999999999999999999999999999999999999888888999999999889999999999
Q ss_pred CCCHHHHHHhhchhhccChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecC-CceE
Q psy13233 142 GMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDA-SSFS 220 (704)
Q Consensus 142 GMT~~eL~~~LgtIa~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~g-g~f~ 220 (704)
|||++||.++|++||+||+++|+++++++ .+ ..+|||||||||||||||++|+|+||++++.++.|+++| +.|+
T Consensus 83 GMt~edl~~~l~tIA~Sgt~~f~~kl~~~----~d-~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~~~t 157 (677)
T 2cg9_A 83 GMTKAELINNLGTIAKSGTKAFMEALSAG----AD-VSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFT 157 (677)
T ss_dssp CCCHHHHHGGGSSSSSCTTHHHHSCCCSS----CC-CCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSEEE
T ss_pred CCCHHHHHHHHHhHhccccHHHHHhhhcc----cc-hhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCceEE
Confidence 99999999999999999999999888754 34 689999999999999999999999999987899999998 8999
Q ss_pred EEeCCCCCCCCCccEEEEEeccchhccCCHHHHHHHHHHhcccCCcceEEeccccccccCCcccccccC--Ccchhcccc
Q psy13233 221 IVNDPRGDNLKRGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEA--PKDEEKKVE 298 (704)
Q Consensus 221 I~~~~~~~~~~~GT~I~L~Lked~~e~l~~~~lk~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 298 (704)
|.+++.+...++||+|+|||++++.+||+.++|+++|++||+||+|||+++..++.+.+++.+++++++ .++++++++
T Consensus 158 i~~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~e~~~~~~~~~~e~~~~~ 237 (677)
T 2cg9_A 158 VTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEEKKDEEKKDEEKKDE 237 (677)
T ss_dssp EEECCSSCCCSSEEEEEEEECTTGGGGGCHHHHHHHHHHHSTTCSSCEEECCCCCCCCC---------------------
T ss_pred EeecCCCCCCCCCeEEEEEEcchhhccccHHHHHHHHHHHHhhCCCCeEEeeccccccCcCcchhhhccccccccccccc
Confidence 998643456789999999999999999999999999999999999999999776655554332211100 000001111
Q ss_pred Ccchhhhhhhh-ccccCccccceeeecccccccccCCCcccCCCCCCCHHHHHHHHhhhcCCCCCCceeEeeeeccccce
Q psy13233 299 GDEEAKVEEAE-DKEEKPKTKKVDKTIWDWEQLNDNKPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTF 377 (704)
Q Consensus 299 ~~~~~~~~~~~-~~~~~~k~k~~~~~~~~~~~~N~~~~~w~r~~~~vt~eey~~fyk~~~~~~~~~l~~~hf~~eg~~~~ 377 (704)
+++++++++.. ++++++|+|++++++++|+.+|+.+|||+|+|++||+|||.+|||++++||++||+|+||++||+++|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~e~e~iN~~~plW~r~~~eit~eeY~~FYk~l~~d~~~pl~~~H~~veg~~~~ 317 (677)
T 2cg9_A 238 DDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEELNKTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEF 317 (677)
T ss_dssp ------------------------CCCCCBCCCCCCCCTTSSCGGGCCTTTHHHHHHHHTTCCSCCSEEEEEEECSSSCE
T ss_pred cccccccccccchhhhcccccccccccccceecccCCCCcccCcccCCHHHHHHHHHHhcCCCCCchheEEecccccceE
Confidence 12223333321 11245678888898999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCccccccccccccchhhH--------------------------------------------HHHHHHH
Q psy13233 378 KAVLFVPQTQPQDSFNRYGTTTDNIKNEL--------------------------------------------KKIELKL 413 (704)
Q Consensus 378 ~~~l~vp~~~p~d~~~~~~~~~~~ik~~v--------------------------------------------kki~~~I 413 (704)
+||||||+++|+|+|++. +.+++||+|| ++|+++|
T Consensus 318 ~~lLyiP~~ap~d~~~~~-~~~~~ikLYv~rVfI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l 396 (677)
T 2cg9_A 318 RAILFIPKRAPFDLFESK-KKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNI 396 (677)
T ss_dssp EEEEEECSSCCC----------CCSEEEETTEEEEECSTTTSCGGGTTCEEEEEESSCCCCBTTTBCCCHHHHHHHHHHH
T ss_pred EEEEEEcCCCchhhhhhh-hccCCeEEEEeeeEeecChhhhchHHHHHheeecccCCCCcccCHHHhccCHHHHHHHHHH
Confidence 999999999999999852 4567888886 4567788
Q ss_pred HHHHHHHhhhhh--------cccccccccccccccCcccHHHHHhhhcccccCC-CCCccHHHHHhhcCCCCCeEEEEEc
Q psy13233 414 KKVIMRNILLTI--------QINVFSFSMKLGVIEDPANRSRLAKLLMFQSSSS-TEPTSLSDYVKRMKPKQDHIYYIAG 484 (704)
Q Consensus 414 ~k~v~~kl~~~~--------~~~~fg~~lK~G~~eD~~nrekL~~LlrF~Ss~~-~~~~SLdeYv~rmke~Qk~IYYltg 484 (704)
+|+|.+.|.+++ +|++||++||+|+++|+.||++|++||||+||.+ ++++||+|||+|||++|+.|||++|
T Consensus 397 ~kkvl~~l~~la~~~e~y~~f~~~fg~~lK~G~~eD~~nr~~l~~llrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~ 476 (677)
T 2cg9_A 397 VKKLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITG 476 (677)
T ss_dssp HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHCSSSHHHHHTTCCBEESSCTTSCBCSTTHHHHSCTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhHHhhhhhccCHHHHHHHHhheEeeecCCCCceeeHHHHHHhccccCceEEEEeC
Confidence 888888887765 4999999999999999999999999999999975 5799999999999999999999999
Q ss_pred CCHHHHhcChHHHHHHHcCceEEEeccchhHHHhhccccccCCceeeccccccCcccchh-------hHHHHHHHHHHHH
Q psy13233 485 ASRKEVESSPFVERLLRKGYEILYLVEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKE-------KMEALKTLQLYTK 557 (704)
Q Consensus 485 ~s~~~~~~SP~lE~~k~kG~EVL~l~dpIDe~~i~~l~~f~gkkf~~V~k~~l~l~~~ee-------~~e~~~~l~~~~k 557 (704)
+|++++++|||+|.|++||||||||+||||||||++|.+|+|++|++|+++ ++|+++++ .++++++|+.+++
T Consensus 477 ~s~~~~~~sp~~E~~~~kg~EVl~l~~~iDe~~~~~l~e~~gk~~~~v~k~-l~l~~~e~~~~~~~~~~~~~~~L~~~~k 555 (677)
T 2cg9_A 477 ESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALK 555 (677)
T ss_dssp SCSTTTTTCGGGHHHHTTTCCEEEECSHHHHHHHGGGSCBTTBEEECSCCC-CCSCSSTTSSTTHHHHHGGGHHHHHHHH
T ss_pred CCHHHHHhCcHHHHHHhCCceEEEeCCchHHHHHHHHHHhCCceEEEeecc-cccccchhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 99875421 1447889999999
Q ss_pred HhhcccceeEEEEEEccchhhhHHHHHh--------------hhcccccCCCccccccHHHHh---hChHHHHHHHHHHH
Q psy13233 558 SLLRGLCLYVRRVFITDEFTDMLPKYLS--------------FIQGIVDSDDLPLNVSRETLQ---QHKLLKVIRKKLIR 620 (704)
Q Consensus 558 ~~l~~~~~~V~~V~IS~rl~d~~P~~l~--------------~~q~v~d~~~~~~~~~r~ile---~h~iI~~l~~~i~~ 620 (704)
++|++. |.+|++|.||+++ |||+. .+|++.+...+.++..+++|+ +||||+.|++....
T Consensus 556 ~~L~~~---v~~V~~s~rl~~s-P~~lv~~~~~~s~~merimka~~~~d~~~~~~~~~k~~LeiNp~hpli~~L~~~~~~ 631 (677)
T 2cg9_A 556 EILGDQ---VEKVVVSYKLLDA-PAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDE 631 (677)
T ss_dssp HTTCSS---CSCEECCSSCSSS-CEEEECCTTSCCHHHHHHHTTCC-------------CEEEECTTCHHHHHHHHHHHT
T ss_pred HhcCCc---ceEEEEeccCCCC-CEEEEeCcccccHHHHHHHHHhhccccccccccccCceEEEcCCCHHHHHHHHhhhc
Confidence 999975 9999999999998 99973 122222322222333455555 99999998754321
Q ss_pred HHHHHhhccChHHHHHHHHHhhh-hhcccc-CCCh-hhHHHHhhhhc
Q psy13233 621 KALDMFKKLDPETYKKFWAEYST-NMKLGV-IEDP-ANRSRLAKLLM 664 (704)
Q Consensus 621 ~~~d~~~~l~~e~~~~~~~~~~~-~~k~g~-~~d~-~~~~~~~~llr 664 (704)
. ..-++..-+.++.+|++ .|-.|+ ++|| ++.+|+.+||.
T Consensus 632 d-----~~~~~~~~~~~~~Lyd~All~~G~~l~dp~~f~~ri~~ll~ 673 (677)
T 2cg9_A 632 G-----GAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLIS 673 (677)
T ss_dssp C-----CSSCSSSSTTHHHHHHHHHHHTTCCCSSTTHHHHHHHHTSS
T ss_pred c-----ccCHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHH
Confidence 0 00111223557899999 668888 9999 89999999985
No 2
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=100.00 E-value=1.3e-114 Score=992.99 Aligned_cols=551 Identities=52% Similarity=0.856 Sum_probs=435.0
Q ss_pred hccccchHhhHHHHHHHHHhcCCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCC
Q psy13233 61 KAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSG 140 (704)
Q Consensus 61 ~~e~~~Fqaev~~Ll~LL~~sLYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNG 140 (704)
..|+|.||+|+++||+||+++||+|+++|||||||||+||++|+||+++++|+.++..+++.|+|.+|+++++|+|+|||
T Consensus 21 ~~e~~~Fqaei~~Ll~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnG 100 (666)
T 2o1u_A 21 MSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTG 100 (666)
T ss_dssp -------------CCSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECS
T ss_pred cccceehHHhHHHHHHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCCCEEEEEECC
Confidence 45889999999999999999999999999999999999999999999999999888888899999999999999999999
Q ss_pred CCCCHHHHHHhhchhhccChhhHHHhhhhhhccc-ccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCce
Q psy13233 141 IGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIK-HDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSF 219 (704)
Q Consensus 141 iGMT~~eL~~~LgtIa~Sgt~~f~~~l~~~~~~~-~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f 219 (704)
+|||++||.++|++||+||++.|+++++++.+.. .+ ..+||||||||||+||||++|+|+||++++.++.|+++||.|
T Consensus 101 iGMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d-~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~~~~~W~s~gg~~ 179 (666)
T 2o1u_A 101 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQST-SELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEF 179 (666)
T ss_dssp CCCCHHHHHHHTTC--------------------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEESSSCC
T ss_pred CCCCHHHHHHHHhhhcccccHHHHHHhhhcccccccc-hhhccCCCcHHHhHHHhcCEEEEEEeeCCCceEEEEEeCCeE
Confidence 9999999999999999999999998887531000 23 679999999999999999999999999877899999998999
Q ss_pred EEEeCCCCCCCCCccEEEEEeccchhccCCHHHHHHHHHHhcccCCcceEEeccccccccCCcccccccCCcchhccccC
Q psy13233 220 SIVNDPRGDNLKRGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEKKVEG 299 (704)
Q Consensus 220 ~I~~~~~~~~~~~GT~I~L~Lked~~e~l~~~~lk~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (704)
+|.+.+.+...++||+|+|+|+++..+|++.++|+++|++||+||++||+++.+++. +
T Consensus 180 ti~~~~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~PI~~~~~~~~-------~--------------- 237 (666)
T 2o1u_A 180 SVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTG-------G--------------- 237 (666)
T ss_dssp EEEECTTCCSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSCEEEEECC-------------------------
T ss_pred EEEecccCCCCCCCeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCceEEeccccc-------c---------------
Confidence 998865334568999999999999999999999999999999999999999754210 0
Q ss_pred cchhhhhhhhccccCccccceeeecccccccccCCCcccCCCCCCCHHHHHHHHhhhcCCCCCCceeEeeeeccccceeE
Q psy13233 300 DEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLNDNKPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTFKA 379 (704)
Q Consensus 300 ~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~N~~~~~w~r~~~~vt~eey~~fyk~~~~~~~~~l~~~hf~~eg~~~~~~ 379 (704)
+ + +++++|+.+|+.+|||+|+|++|++|+|.+||++++++|.+||+++||++||+++|++
T Consensus 238 ------------~-~-------~~~~~~~~iN~~~~lw~~~~~~i~~eey~~fy~~~~~d~~~pl~~ih~~~eg~~~~~g 297 (666)
T 2o1u_A 238 ------------G-G-------KTVWDWELMNDIKPIWQRPSKEVEDDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKS 297 (666)
T ss_dssp ------------------------CCEEEECSCCSCTTTSCTTTCCHHHHHHHHHHTTCTTSCCSEEEEEEECSSSCEEE
T ss_pred ------------c-c-------ccccceEEEecCccccccCcccccHHHHHHHHhhhccccccCeeEEEecccCcEEEEE
Confidence 0 0 1135799999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCccccccc-cccccchhhH--------------------------------------------HHHHHHHH
Q psy13233 380 VLFVPQTQPQDSFNRYG-TTTDNIKNEL--------------------------------------------KKIELKLK 414 (704)
Q Consensus 380 ~l~vp~~~p~d~~~~~~-~~~~~ik~~v--------------------------------------------kki~~~I~ 414 (704)
+||+|+++|+|+|++.. ..+++|++|| ++|+++|+
T Consensus 298 ll~iP~~~p~d~~~~~~~~~~~~i~LYVn~vfI~d~~~~llP~~l~FvkGvVDs~dLplNVSRE~LQ~~~~l~~I~~~l~ 377 (666)
T 2o1u_A 298 ILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITDDFHDMMPKYLNFVKGVVDSDDLPLNVSRETLQQHKLLKVIRKKLV 377 (666)
T ss_dssp EEEECSSCCC------------CEEEEETTEEEESCCCTTSCGGGTTCEEEEEESSSCSSSCHHHHHTCHHHHHHHHHHH
T ss_pred EEEcCCCCchhhhhhccccccCCeEEEEcCeEeeCchhhhhHHHHHHeeeeeCHhhCCCcccchhhccCHHHHHHHHHHH
Confidence 99999999999997521 2345555443 57888999
Q ss_pred HHHHHHhhhh-------hcccccccccccccccCcccHHHHHhhhcccccCC-CCCccHHHHHhhcCCCCCeEEEEEcCC
Q psy13233 415 KVIMRNILLT-------IQINVFSFSMKLGVIEDPANRSRLAKLLMFQSSSS-TEPTSLSDYVKRMKPKQDHIYYIAGAS 486 (704)
Q Consensus 415 k~v~~kl~~~-------~~~~~fg~~lK~G~~eD~~nrekL~~LlrF~Ss~~-~~~~SLdeYv~rmke~Qk~IYYltg~s 486 (704)
|+|.+.|.++ -+|++||++||+|+++|+.||++|++||||+||.+ ++++||+|||+|||++|+.|||++|+|
T Consensus 378 kkv~~~l~~l~~e~y~~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~ 457 (666)
T 2o1u_A 378 RKTLDMIKKIADEKYNDTFWKEFGTNIKLGVIEDHSNRTRLAKLLRFQSSHHPSDITSLDQYVERMKEKQDKIYFMAGSS 457 (666)
T ss_dssp HHHHHHHHHSCHHHHHHTHHHHHHHHHHHHHHHCGGGHHHHHTTCCEEETTSSSCEECHHHHHHHSCTTCCEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCHHHHHHHHhheEeeecCCCCceeeHHHHHHhcccccceEEEEeCCC
Confidence 9999998876 46999999999999999999999999999999976 579999999999999999999999999
Q ss_pred HHHHhcChHHHHHHHcCceEEEeccchhHHHhhccccccCCceeeccccccCcccchhh-------HHHHHHHHHHHHHh
Q psy13233 487 RKEVESSPFVERLLRKGYEILYLVEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEK-------MEALKTLQLYTKSL 559 (704)
Q Consensus 487 ~~~~~~SP~lE~~k~kG~EVL~l~dpIDe~~i~~l~~f~gkkf~~V~k~~l~l~~~ee~-------~e~~~~l~~~~k~~ 559 (704)
++++++|||+|.|++||||||||+||||||||++|.+|+|++|++|++++++|++++++ ++++++|++|+|+.
T Consensus 458 ~~~~~~sp~~e~~~~kg~eVl~l~~~iDe~~~~~l~e~~gk~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~k~~ 537 (666)
T 2o1u_A 458 RKEAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDESEKTKESREAIEKEFEPLLNWMKDK 537 (666)
T ss_dssp HHHHHTCGGGHHHHHTTCCCEEECSTHHHHHHHTCCCBTTBEEEETTBSCCCCCCCHHHHHHHHHHHHHSHHHHHHHHHT
T ss_pred HHHHhhCcHHHHHHhCCceEEEeCCchHHHHHHHHHhcCCCceEEecccccccccchhhhhhhhhhHHhHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999998765321 34678899999999
Q ss_pred -hcccceeEEEEEEccchhhhHHHHHh--------------hhccc--c-cCCCccccccHHHHh---hChHHHHHHHHH
Q psy13233 560 -LRGLCLYVRRVFITDEFTDMLPKYLS--------------FIQGI--V-DSDDLPLNVSRETLQ---QHKLLKVIRKKL 618 (704)
Q Consensus 560 -l~~~~~~V~~V~IS~rl~d~~P~~l~--------------~~q~v--~-d~~~~~~~~~r~ile---~h~iI~~l~~~i 618 (704)
|++. |.+|+||+||+++ ||||. .+|++ . +..++.++..+++|+ +||||+.|++..
T Consensus 538 ~L~~~---v~~V~~s~rl~~s-P~~lv~~~~~~s~~m~r~~~~~~~~~~~~~~~~~~~~~k~~LeiNp~H~li~~l~~~~ 613 (666)
T 2o1u_A 538 ALKDK---IEKAVVSQRLTES-PCALVASQYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRHPLIKDMLRRV 613 (666)
T ss_dssp TTTTT---EEEEEECSSCSSC-SEEEEBCTTSCCHHHHHHHHHHHHHTSCCCCSCSSSSCCEEEEECTTSHHHHHHHHHH
T ss_pred cCCCc---eeEEEEeecCCCC-CeEEEecCcccCHHHHHHHHHhhhhcccCcccccccccCeeeEECCCCHHHHHHHHhh
Confidence 9975 9999999999998 99873 13333 1 222222233455555 999999997654
Q ss_pred HHHHHHHhhccChHHHHHHHHHhhh-hhcccc-CCCh-hhHHHHhhhhc
Q psy13233 619 IRKALDMFKKLDPETYKKFWAEYST-NMKLGV-IEDP-ANRSRLAKLLM 664 (704)
Q Consensus 619 ~~~~~d~~~~l~~e~~~~~~~~~~~-~~k~g~-~~d~-~~~~~~~~llr 664 (704)
... .-++..-+.++.+|++ .|-.|+ ++|| ++.+|+.+||.
T Consensus 614 ~~~------~~~~~~~~~~~~l~d~All~~G~~~~dp~~f~~r~~~ll~ 656 (666)
T 2o1u_A 614 KED------EDDKTVSDLAVVLFETATLRSGYLLPDTKAYGDRIERMLR 656 (666)
T ss_dssp HHC------TTCHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHH
T ss_pred hcc------cchHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHH
Confidence 311 1122344778999999 567788 9999 88999999996
No 3
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=100.00 E-value=3.1e-110 Score=953.47 Aligned_cols=532 Identities=37% Similarity=0.621 Sum_probs=439.4
Q ss_pred ccccchHhhHHHHHHHHHhcCCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCC
Q psy13233 62 AESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGI 141 (704)
Q Consensus 62 ~e~~~Fqaev~~Ll~LL~~sLYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGi 141 (704)
.|+|.||+|+++||++|+++||+|+++|||||||||+||++|+||+++++|++++...++.|+|.+|+++++|+|.|||+
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGi 83 (624)
T 2ioq_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGV 83 (624)
T ss_dssp -----------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEECSC
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCCcEEEEEECCC
Confidence 37899999999999999999999999999999999999999999999999998877888999999999999999999999
Q ss_pred CCCHHHHHHhhchhhccChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCC---CCcEEEEecC-C
Q psy13233 142 GMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNE---DSQYIWESDA-S 217 (704)
Q Consensus 142 GMT~~eL~~~LgtIa~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~---d~~~~Wes~g-g 217 (704)
|||++||.++|++||+||+++|+++++++. ..+ ..+||||||||||+||||++|+|+||+++ +.++.|+++| +
T Consensus 84 GMt~edl~~~l~tiA~Sg~~~f~~~l~~~~--~~~-~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~ 160 (624)
T 2ioq_A 84 GMTRDEVIDHLGTIAKSGTKSFLESLGSDQ--AKD-SQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEG 160 (624)
T ss_dssp CCCHHHHHHHHHHHCC-----------------CC-TTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSS
T ss_pred CCCHHHHHHHHHhhcccccHHHHHHhcccc--ccc-ccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCC
Confidence 999999999999999999999998886531 123 67999999999999999999999999986 4689999998 8
Q ss_pred ceEEEeCCCCCCCCCccEEEEEeccchhccCCHHHHHHHHHHhcccCCcceEEeccccccccCCcccccccCCcchhccc
Q psy13233 218 SFSIVNDPRGDNLKRGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEKKV 297 (704)
Q Consensus 218 ~f~I~~~~~~~~~~~GT~I~L~Lked~~e~l~~~~lk~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (704)
.|+|.+. ....+||+|+|+|+++..+|++.++|+++|++||+|+++||+++.. + + +
T Consensus 161 ~~~i~~~---~~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~PI~~~~~-----e----~--~---------- 216 (624)
T 2ioq_A 161 EYTVADI---TKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKR-----E----E--K---------- 216 (624)
T ss_dssp CCEEEEE---CCSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSCEEEEEE-----E----E--C----------
T ss_pred eEEEEEC---CCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEEeec-----c----c--c----------
Confidence 9999874 2358999999999999999999999999999999999999999631 0 0 0
Q ss_pred cCcchhhhhhhhccccCccccceeeecccccccccCCCcccCCCCCCCHHHHHHHHhhhcCCCCCCceeEeeeeccccce
Q psy13233 298 EGDEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLNDNKPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTF 377 (704)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~N~~~~~w~r~~~~vt~eey~~fyk~~~~~~~~~l~~~hf~~eg~~~~ 377 (704)
+ ++ + +++|+.+|+.+|||+|+|+++++++|.+||++++++|.+||+++||++||+++|
T Consensus 217 --~-----------~~--------~-~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~eg~~~~ 274 (624)
T 2ioq_A 217 --D-----------GE--------T-VISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEY 274 (624)
T ss_dssp --S-----------SC--------E-EEEEEECCCCSCTTTSCTTTCCHHHHHHHHHHHHTCCSCCSCCEEEEEESSSCE
T ss_pred --c-----------cc--------c-ccceEEEeCCccceEecCccchHHHHHHHHHhhccchhcCeEEEEecccceEEE
Confidence 0 00 0 357899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCccccccccccccchhhH--------------------------------------------HHHHHHH
Q psy13233 378 KAVLFVPQTQPQDSFNRYGTTTDNIKNEL--------------------------------------------KKIELKL 413 (704)
Q Consensus 378 ~~~l~vp~~~p~d~~~~~~~~~~~ik~~v--------------------------------------------kki~~~I 413 (704)
+++||+|..+|+|+|++ ..+++|++|| ++|+++|
T Consensus 275 ~gll~~P~~~p~~~~~r--~~~~~i~lyvn~v~I~d~~~~llP~~l~fv~gvVDs~dl~lNVSRE~LQ~~~~l~~I~~~l 352 (624)
T 2ioq_A 275 TSLLYIPSQAPWDMWNR--DHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNAL 352 (624)
T ss_dssp EEEEECCSSCCGGGSSS--SCCCCEEEEESSCEEEEEECSSSCTTSTTCEEEEEESSSCTTCCHHHHHHSSHHHHHHHHH
T ss_pred EEEEEeCCcCccchhhh--cccCCeEEEECCEEeecchhccchhhhhhEEEEECHhhCCCccCchhhhhhHHHHHHHHHH
Confidence 99999999999999975 3455665554 5788888
Q ss_pred HHHHHHHhhhhh---------cccccccccccccccCcccHHHHHhhhcccccCCC---CCccHHHHHhhcCCCCCeEEE
Q psy13233 414 KKVIMRNILLTI---------QINVFSFSMKLGVIEDPANRSRLAKLLMFQSSSST---EPTSLSDYVKRMKPKQDHIYY 481 (704)
Q Consensus 414 ~k~v~~kl~~~~---------~~~~fg~~lK~G~~eD~~nrekL~~LlrF~Ss~~~---~~~SLdeYv~rmke~Qk~IYY 481 (704)
+|+|.+.|.+++ +|++||++||+|+++|+.||++|++||||+||.++ +++||+||++|||++|+.|||
T Consensus 353 ~kkv~~~l~~l~~~d~e~y~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~~~sL~eY~~rmke~q~~IyY 432 (624)
T 2ioq_A 353 TKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYY 432 (624)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTHHHHCCTTHHHHHHHCCBEETTSSCSCCCBCHHHHHTTCCTTCCSEEE
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhHHhhhhhccCHHHHHHHHHheEeeecCCCcCCCeeeHHHHHHhccccCceEEE
Confidence 899988888775 49999999999999999999999999999999743 699999999999999999999
Q ss_pred EEcCCHHHHhcChHHHHHHHcCceEEEeccchhHHHhhccccccCCceeeccccccCcccc-hh-------hHHHHHHHH
Q psy13233 482 IAGASRKEVESSPFVERLLRKGYEILYLVEAVDEYTLSSLPEFEGKKFQNIAKEGLSISAN-KE-------KMEALKTLQ 553 (704)
Q Consensus 482 ltg~s~~~~~~SP~lE~~k~kG~EVL~l~dpIDe~~i~~l~~f~gkkf~~V~k~~l~l~~~-ee-------~~e~~~~l~ 553 (704)
++|+|++++++|||+|.|++||||||+|+||||||||++|.+|+|++|++|+++++++.+. ++ .++++++|+
T Consensus 433 ~t~~~~~~~~~sp~~e~~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 512 (624)
T 2ioq_A 433 ITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFI 512 (624)
T ss_dssp EECSSHHHHHHCHHHHHHHHHTCCCEEECSSTHHHHTTTCCEETTEEEEETTSCSTTTTTCC-------HHHHHHHHHHH
T ss_pred EeCCCHHHHhhChHHHHHHhCCceEEEecCchHHHHHHHHHhcCCceEEEeecccccccccchhhhhhhhHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999997642 11 145788999
Q ss_pred HHHHHhhcccceeEEEEEEccchhhhHHHHHhhhcccccCCCccccc-------------cHHHHh---hChHHHHHHHH
Q psy13233 554 LYTKSLLRGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNV-------------SRETLQ---QHKLLKVIRKK 617 (704)
Q Consensus 554 ~~~k~~l~~~~~~V~~V~IS~rl~d~~P~~l~~~q~v~d~~~~~~~~-------------~r~ile---~h~iI~~l~~~ 617 (704)
++++++|++. |.+|+||.||+++ |||+. .+..++..+| .+++|+ +||||+.|.+.
T Consensus 513 ~~~k~~L~~~---v~~V~~s~rl~~s-P~~lv-----~~~~~~~~~m~r~m~~~~~~~~~~~~~LeiN~~hpli~~L~~~ 583 (624)
T 2ioq_A 513 DRVKALLGER---VKDVRLTHRLTDT-PAIVS-----TDADEMSTQMAKLFAAAGQKVPEVKYIFELNPDHVLVKRAADT 583 (624)
T ss_dssp HHHHHHSSSS---SSEEEECCCCSSC-CEEEE-----CCC---------------------CCEEEECTTCHHHHTTTSC
T ss_pred HHHHHhhcCC---ceEEEEeecCCCC-cEEEE-----ecCcCcCHHHHHHHHHhhhcccccCceEEECCCCHHHHHHHhh
Confidence 9999999975 9999999999998 99862 2222222221 233343 99999888531
Q ss_pred HHHHHHHHhhccChH-HHHHHHHHhhh-hhcccc-CCCh-hhHHHHhhhhc
Q psy13233 618 LIRKALDMFKKLDPE-TYKKFWAEYST-NMKLGV-IEDP-ANRSRLAKLLM 664 (704)
Q Consensus 618 i~~~~~d~~~~l~~e-~~~~~~~~~~~-~~k~g~-~~d~-~~~~~~~~llr 664 (704)
-+++ .-+.++.+|++ .|-.|+ ++|| ++.+|+.+||.
T Consensus 584 -----------~~~~~~~~~~~~L~d~All~~g~~l~dp~~f~~r~~~~l~ 623 (624)
T 2ioq_A 584 -----------EDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLV 623 (624)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred -----------cCHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHhh
Confidence 1222 34678999999 667786 9999 88999999984
No 4
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=100.00 E-value=7.2e-108 Score=924.16 Aligned_cols=484 Identities=39% Similarity=0.662 Sum_probs=378.9
Q ss_pred ccccchHhhHHHHHHHHHhcCCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCC
Q psy13233 62 AESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGI 141 (704)
Q Consensus 62 ~e~~~Fqaev~~Ll~LL~~sLYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGi 141 (704)
.|+|.||+|+++||++|+++||+|+++|||||||||+||++|+||+++++|++++...++.|+|.+|+++++|+|.|||+
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnGi 83 (559)
T 1y4s_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGV 83 (559)
T ss_dssp CEEEECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEECSS
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCCcEEEEEECCC
Confidence 47899999999999999999999999999999999999999999999999998887888999999999999999999999
Q ss_pred CCCHHHHHHhhchhhccChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCC---CCcEEEEecC-C
Q psy13233 142 GMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNE---DSQYIWESDA-S 217 (704)
Q Consensus 142 GMT~~eL~~~LgtIa~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~---d~~~~Wes~g-g 217 (704)
|||++||.++|++||+||+++|+++++++. ..+ ..+||||||||||+||||++|+|+||+++ +.++.|+++| +
T Consensus 84 GMt~edl~~~l~tiA~Sg~~~f~e~l~~~~--~~~-~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~ 160 (559)
T 1y4s_A 84 GMTRDEVIDHLGTIAKSGTKSFLESLGSDQ--AKD-SQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEG 160 (559)
T ss_dssp CCCHHHHHHHHSCCSCCCCCCTTCC-----------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSS
T ss_pred CCCHHHHHHHHhhhcccccHHHHHHhhccc--ccc-ccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCC
Confidence 999999999999999999999988876431 123 67999999999999999999999999986 4689999998 8
Q ss_pred ceEEEeCCCCCCCCCccEEEEEeccchhccCCHHHHHHHHHHhcccCCcceEEeccccccccCCcccccccCCcchhccc
Q psy13233 218 SFSIVNDPRGDNLKRGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEKKV 297 (704)
Q Consensus 218 ~f~I~~~~~~~~~~~GT~I~L~Lked~~e~l~~~~lk~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (704)
.|+|.+. ...++||+|+|||+++..+|++.++|+++|++||+|+++||.++.. + ++
T Consensus 161 ~~~i~~~---~~~~~GT~I~L~Lk~d~~Efle~~~I~~iv~kys~fi~~PI~~~~~-----e---~~------------- 216 (559)
T 1y4s_A 161 EYTVADI---TKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKR-----E---EK------------- 216 (559)
T ss_dssp EEEEEEE---CCCSCEEEEEEEECTTCGGGSCHHHHHHHHHHHHTTCSSCEEEEEE-----E---CS-------------
T ss_pred eeEEeEC---CCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEEeec-----c---cc-------------
Confidence 9999875 2358999999999999999999999999999999999999999641 0 00
Q ss_pred cCcchhhhhhhhccccCccccceeeecccccccccCCCcccCCCCCCCHHHHHHHHhhhcCCCCCCceeEeeeeccccce
Q psy13233 298 EGDEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLNDNKPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTF 377 (704)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~N~~~~~w~r~~~~vt~eey~~fyk~~~~~~~~~l~~~hf~~eg~~~~ 377 (704)
+ ++ + +++|+.+|+.+|||+|+|+++++++|.+||++++++|.+||+++||++||+++|
T Consensus 217 --~-----------~~--------~-~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~eg~~~~ 274 (559)
T 1y4s_A 217 --D-----------GE--------T-VISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEY 274 (559)
T ss_dssp --T-----------TS--------C-EEEEEECCCCCCGGGSCGGGCCHHHHHHHHHHHHTCSSCEEEEEEECCCSSSCE
T ss_pred --c-----------cc--------c-ccceEEEeCCccceecCcccccHHHHHHHHHhhhhhhhcCeEEEEeccCCceEE
Confidence 0 00 0 347899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCccccccccccccchhhH--------------------------------------------HHHHHHH
Q psy13233 378 KAVLFVPQTQPQDSFNRYGTTTDNIKNEL--------------------------------------------KKIELKL 413 (704)
Q Consensus 378 ~~~l~vp~~~p~d~~~~~~~~~~~ik~~v--------------------------------------------kki~~~I 413 (704)
+++||+|..+|+|+|++ ..+++|++|| ++|+++|
T Consensus 275 ~gll~~P~~~p~~~~~r--~~~~~i~lyvn~v~I~d~~~~llP~~l~fv~gvVDs~dlplNVSRE~lq~~~~l~~I~~~l 352 (559)
T 1y4s_A 275 TSLLYIPSQAPWDMWNR--DHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNAL 352 (559)
T ss_dssp EEEEEEESSCCTTCSSS--SCCCCEEEEETTEEEEEEEGGGSCGGGTTCEEEEEESSSCTTCCTTGGGGCHHHHHHHHHH
T ss_pred EEEEEcCCcCcchhhhh--cccCCeEEEEcCEEeecchhhhChHhHhheeEeeChhhCCCeeCchhhhhhHHHHHHHHHH
Confidence 99999999999999975 3455665554 4678888
Q ss_pred HHHHHHHhhhhh---------cccccccccccccccCcccHHHHHhhhcccccCCC---CCccHHHHHhhcCCCCCeEEE
Q psy13233 414 KKVIMRNILLTI---------QINVFSFSMKLGVIEDPANRSRLAKLLMFQSSSST---EPTSLSDYVKRMKPKQDHIYY 481 (704)
Q Consensus 414 ~k~v~~kl~~~~---------~~~~fg~~lK~G~~eD~~nrekL~~LlrF~Ss~~~---~~~SLdeYv~rmke~Qk~IYY 481 (704)
+|+|.+.|.+++ +|++||++||+|+++|+.||++|++||||+||.++ +++||+||++|||++|+.|||
T Consensus 353 ~kkv~~~l~~l~~~d~e~y~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~~~sL~eY~~rmk~~q~~IyY 432 (559)
T 1y4s_A 353 TKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYY 432 (559)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTSTTTCGGGHHHHHTTCEEBCSSCSSSSCCEETTSSSTTCCTTCSCCBE
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhHHhhhhhccCHHHHHHHHHhhEeeecCCCcCCCeeeHHHHHHhccccCceEEE
Confidence 888888888765 49999999999999999999999999999999753 699999999999999999999
Q ss_pred EEcCCHHHHhcChHHHHHHHcCceEEEeccchhHHHhhccccccCCceeeccccccCcccc-hh-------hHHHHHHHH
Q psy13233 482 IAGASRKEVESSPFVERLLRKGYEILYLVEAVDEYTLSSLPEFEGKKFQNIAKEGLSISAN-KE-------KMEALKTLQ 553 (704)
Q Consensus 482 ltg~s~~~~~~SP~lE~~k~kG~EVL~l~dpIDe~~i~~l~~f~gkkf~~V~k~~l~l~~~-ee-------~~e~~~~l~ 553 (704)
++|+|++++++|||+|.|++||||||||+||||||||++|.+|+|++|++|+++++++++. ++ .++++++|+
T Consensus 433 ~t~~~~~~~~~sp~~e~~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 512 (559)
T 1y4s_A 433 ITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKALTPFI 512 (559)
T ss_dssp ECCSSSHHHHTCSSSHHHHHTTCCCEECCSTTHHHHHHHCCCCSSSCCBCC-----------------------------
T ss_pred EeCCCHHHHhhChHHHHHHhCCceEEEecChHHHHHHHHHHHhCCceEEecccccccccccchhhhhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999997653 21 135788899
Q ss_pred HHHHHhhcccceeEEEEEEccchhhhHHHHHhhhcccccCCCccccccHHHH
Q psy13233 554 LYTKSLLRGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETL 605 (704)
Q Consensus 554 ~~~k~~l~~~~~~V~~V~IS~rl~d~~P~~l~~~q~v~d~~~~~~~~~r~il 605 (704)
+++|++|++. |.+|+||+||+++ |||+ |.+..+|+.+|.|-+.
T Consensus 513 ~~~k~~L~~~---v~~V~~s~rl~~s-p~~~-----v~~~~~~~~~m~~~~~ 555 (559)
T 1y4s_A 513 DRVKALLGER---VKDVRLTHRLTDT-PAIV-----STDADEMSTQMAKLFA 555 (559)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHhcCC---ceEEEEeccCCCC-CEEE-----EeCCCCcCHHHHHHHH
Confidence 9999999875 9999999999998 9995 6677788889987443
No 5
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major}
Probab=100.00 E-value=1e-71 Score=612.10 Aligned_cols=330 Identities=34% Similarity=0.591 Sum_probs=269.8
Q ss_pred ccccccccCCCcccCCCCCCCHHHHHHHHhhhcCCCCCCceeEeeeeccccceeEEEEecCCCCCccccccccccccchh
Q psy13233 325 WDWEQLNDNKPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSFNRYGTTTDNIKN 404 (704)
Q Consensus 325 ~~~~~~N~~~~~w~r~~~~vt~eey~~fyk~~~~~~~~~l~~~hf~~eg~~~~~~~l~vp~~~p~d~~~~~~~~~~~ik~ 404 (704)
.+|+.+|+.+|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+++|+|+|++ ++.+++||+
T Consensus 11 ~~~e~iN~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~~~~~lLyiP~~ap~dl~~~-~~~~~~ikL 89 (444)
T 3hjc_A 11 RENLYFQGHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRSIMFVPKRAPFDMFEP-NKKRNNIKL 89 (444)
T ss_dssp --------CCCGGGSCGGGCCHHHHHHHHHHTSSCCSCCSEEEEEEECSSSCEEEEEEECSSCCC----C-CCCCCSEEE
T ss_pred CCceeccCCCCCCCCCcccCCHHHHHHHHHHhcCCccCCceeEEEEecccceeeEEEecCCCCCcchhhh-hhhcCCeeE
Confidence 4699999999999999999999999999999999999999999999999999999999999999999984 345678887
Q ss_pred hH--------------------------------------------HHHHHHHHHHHHHHhhhhh--------ccccccc
Q psy13233 405 EL--------------------------------------------KKIELKLKKVIMRNILLTI--------QINVFSF 432 (704)
Q Consensus 405 ~v--------------------------------------------kki~~~I~k~v~~kl~~~~--------~~~~fg~ 432 (704)
|| ++|+++|+|+|.+.|.+++ +|++||+
T Consensus 90 Yv~rVfI~D~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kKvl~~L~~la~d~e~Y~kFw~~fg~ 169 (444)
T 3hjc_A 90 YVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFDEVAENKEDYKQFYEQFGK 169 (444)
T ss_dssp EETTEEEESCCGGGSCGGGTTCEEEEEESSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred EEeeeEeecchhhhchHHHhhheEEeccCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhH
Confidence 76 5668888888888888775 4999999
Q ss_pred ccccccccCcccHHHHHhhhcccccCC-CCCccHHHHHhhcCCCCCeEEEEEcCCHHHHhcChHHHHHHHcCceEEEecc
Q psy13233 433 SMKLGVIEDPANRSRLAKLLMFQSSSS-TEPTSLSDYVKRMKPKQDHIYYIAGASRKEVESSPFVERLLRKGYEILYLVE 511 (704)
Q Consensus 433 ~lK~G~~eD~~nrekL~~LlrF~Ss~~-~~~~SLdeYv~rmke~Qk~IYYltg~s~~~~~~SP~lE~~k~kG~EVL~l~d 511 (704)
+||+|+++|+.||++|++||||+||.+ ++++||+||++|||++|+.|||++|+|++.+++|||+|.|++||||||||+|
T Consensus 170 ~lK~G~~eD~~~~~~l~~lLrF~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d 249 (444)
T 3hjc_A 170 NIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDSKKKLETSPFIEQARRRGLEVLFMTE 249 (444)
T ss_dssp HHHHHHTTCGGGHHHHHHHCCBCBTTTTTSCBCHHHHHHTCCTTCCEEEEEECSCHHHHHTCGGGHHHHHHTCCEEEECS
T ss_pred HHhccccccHHHHHHHHHheEeeeecCCCCcCcHHHHHHhccccCceEEEEeCCCHHHHHhChHHHHHHhCCcEEEEeCC
Confidence 999999999999999999999999975 6799999999999999999999999999999999999999999999999999
Q ss_pred chhHHHhhccccccCCceeeccccccCcccchhh-------HHHHHHHHHHHHHhhcccceeEEEEEEccchhhhHHHHH
Q psy13233 512 AVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEK-------MEALKTLQLYTKSLLRGLCLYVRRVFITDEFTDMLPKYL 584 (704)
Q Consensus 512 pIDe~~i~~l~~f~gkkf~~V~k~~l~l~~~ee~-------~e~~~~l~~~~k~~l~~~~~~V~~V~IS~rl~d~~P~~l 584 (704)
|||||||++|.+|+|++|++|+++++++++.+++ ++++++|++|+++.|++. |++|+||+||+++ |||+
T Consensus 250 ~iDe~~i~~L~e~~gk~f~sV~k~~l~l~~~eeek~~~ee~~~~~~~L~~~~K~~L~~k---V~~V~vS~RL~~s-P~~l 325 (444)
T 3hjc_A 250 PIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKEVLGDK---VEKVIVSERLSTS-PCIL 325 (444)
T ss_dssp HHHHHHHHHCCEETTEEEEETTBSSCCCCCCHHHHHHHHHHHHHTHHHHHHHHHHHGGG---CSEEEECSSCSSS-SEEE
T ss_pred chHHHHHHHHHHhCCceEEEeccccccchhhhhhhhhhHHHHHHHHHHHHHHHHHhcCc---ceEEEecCCCCCC-CeEE
Confidence 9999999999999999999999999998654321 346788999999999975 9999999999998 9986
Q ss_pred h--------------hhcccccCCCccccccHHHHh---hChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHhhh-hhc
Q psy13233 585 S--------------FIQGIVDSDDLPLNVSRETLQ---QHKLLKVIRKKLIRKALDMFKKLDPETYKKFWAEYST-NMK 646 (704)
Q Consensus 585 ~--------------~~q~v~d~~~~~~~~~r~ile---~h~iI~~l~~~i~~~~~d~~~~l~~e~~~~~~~~~~~-~~k 646 (704)
. .+|+..+...+..+..+++|+ +||||+.|++..... .-++..-+.++.+|++ .|-
T Consensus 326 v~~e~g~s~~Merimka~~~~~~~~~~~~~~k~~LEINp~Hpli~~L~~~~~~d------~~~~~~~~l~~lLyd~AlL~ 399 (444)
T 3hjc_A 326 VTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGAD------ENDKAVKDLVFLLFDTSLLT 399 (444)
T ss_dssp EBCSSSBCHHHHHHHHHC--------CTTBCCCEEEECTTSHHHHHHHHHHHTC-------CCHHHHHHHHHHHHHHHHH
T ss_pred EcCCccccHHHHHHHHHhcccccccccccccCeeEEECCCCHHHHHHHHHhhcC------cchHHHHHHHHHHHHHHHHh
Confidence 2 123333322222333444554 999999998754321 1123344678999999 567
Q ss_pred ccc-CCCh-hhHHHHhhhhcc
Q psy13233 647 LGV-IEDP-ANRSRLAKLLMF 665 (704)
Q Consensus 647 ~g~-~~d~-~~~~~~~~llrf 665 (704)
.|+ ++|| ++.+|+.+||.-
T Consensus 400 ~G~~ledp~~f~~ri~~ll~~ 420 (444)
T 3hjc_A 400 SGFQLEDPTGYAERINRMIKL 420 (444)
T ss_dssp HTCCCSCHHHHHHHHHHHHHH
T ss_pred CCCCcccHHHHHHHHHHHHHH
Confidence 888 9999 889999999864
No 6
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Probab=100.00 E-value=4.8e-71 Score=604.80 Aligned_cols=323 Identities=36% Similarity=0.620 Sum_probs=264.4
Q ss_pred cCCCcccCCCCCCCHHHHHHHHhhhcCCCCCCceeEeeeeccccceeEEEEecCCCCCccccccccccccchhhH-----
Q psy13233 332 DNKPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSFNRYGTTTDNIKNEL----- 406 (704)
Q Consensus 332 ~~~~~w~r~~~~vt~eey~~fyk~~~~~~~~~l~~~hf~~eg~~~~~~~l~vp~~~p~d~~~~~~~~~~~ik~~v----- 406 (704)
.++|||+|+|++||+|||.+|||++++||++||+|+||++||+++|+||||||+++|+|+|++ ...+++||+||
T Consensus 2 ~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~e~~~lLyiP~~ap~d~~~~-~~~~~~ikLYvrrVfI 80 (448)
T 3q6m_A 2 ATKPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFEN-RKKKNNIKLYVRRVFI 80 (448)
T ss_dssp --CCGGGSCTTSCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCC----------CCEEEEETTEEE
T ss_pred CCCCCCCCChhhCCHHHHHHHHHHhcCCccCChheeeeccCCCeeeEEEEEccCCCchhhhhh-hhhccceeEEeeeeEE
Confidence 368999999999999999999999999999999999999999999999999999999999975 24567787776
Q ss_pred ---------------------------------------HHHHHHHHHHHHHHhhhhh--------cccccccccccccc
Q psy13233 407 ---------------------------------------KKIELKLKKVIMRNILLTI--------QINVFSFSMKLGVI 439 (704)
Q Consensus 407 ---------------------------------------kki~~~I~k~v~~kl~~~~--------~~~~fg~~lK~G~~ 439 (704)
++|+++|+|+|.+.|.+++ +|++||++||+|++
T Consensus 81 ~d~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~Irk~i~kKvl~~L~~la~d~e~Y~~f~~~fg~~lK~Gi~ 160 (448)
T 3q6m_A 81 MDNCEELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNLVKKCLELFTELAEDKENYKKFYEQFSKNIKLGIH 160 (448)
T ss_dssp ESCCTTSSCGGGTTCEEEEEESCCC---------CCSHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhhhchhhhhheeEEeccCCCCccccHHhhccCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHHhhhc
Confidence 5668888888888888764 49999999999999
Q ss_pred cCcccHHHHHhhhcccccCC-CCCccHHHHHhhcCCCCCeEEEEEcCCHHHHhcChHHHHHHHcCceEEEeccchhHHHh
Q psy13233 440 EDPANRSRLAKLLMFQSSSS-TEPTSLSDYVKRMKPKQDHIYYIAGASRKEVESSPFVERLLRKGYEILYLVEAVDEYTL 518 (704)
Q Consensus 440 eD~~nrekL~~LlrF~Ss~~-~~~~SLdeYv~rmke~Qk~IYYltg~s~~~~~~SP~lE~~k~kG~EVL~l~dpIDe~~i 518 (704)
+|..||++|++||||+||.+ ++++||+|||+|||++|+.|||++|+|++++++|||+|.|++||||||||+||||||||
T Consensus 161 eD~~n~~~l~~LLrF~Ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~iDe~~i 240 (448)
T 3q6m_A 161 EDSQNRKKLSELLRYYTSASGDEMVSLKDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCV 240 (448)
T ss_dssp HCGGGHHHHHTTCEEEETTTTTSCEEHHHHHHTCCSSCCEEEEEECSCHHHHHTSGGGHHHHHHTCCEEEECSTHHHHHT
T ss_pred ccHHHHHHHHHhhEeeeccCCCceEeHHHHHHhccccCceEEEEecCCHHHHHhChHHHHHHHCCCEEEEecCchHHHHH
Confidence 99999999999999999975 57999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCCceeeccccccCcccchhh-------HHHHHHHHHHHHHhhcccceeEEEEEEccchhhhHHHHHh------
Q psy13233 519 SSLPEFEGKKFQNIAKEGLSISANKEK-------MEALKTLQLYTKSLLRGLCLYVRRVFITDEFTDMLPKYLS------ 585 (704)
Q Consensus 519 ~~l~~f~gkkf~~V~k~~l~l~~~ee~-------~e~~~~l~~~~k~~l~~~~~~V~~V~IS~rl~d~~P~~l~------ 585 (704)
++|.+|+|++|++|+++++++++++++ ++++++|++|+|+.|++. |++|+||+||+++ ||||.
T Consensus 241 ~~L~ef~gk~~~sV~k~~l~l~~~eeek~~~ee~~~~~~~L~~~~K~~L~~k---V~~V~vS~RL~~s-P~~lv~~e~g~ 316 (448)
T 3q6m_A 241 QQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDILEKK---VEKVVVSNRLVTS-PCCIVTSTYGW 316 (448)
T ss_dssp TTCCEETTEEEEETTBSCCCCCCCHHHHHHHHHHHHHSHHHHHHHHHHTGGG---CSEEEECSSCSSS-SEEEEECSSSC
T ss_pred HHHHhhCCceEEEecccccCcccchhhhhhHHHHHHHHHHHHHHHHHHhcCc---ceEEEecCCCCCC-CeEEEeCCcch
Confidence 999999999999999999999655322 346788999999999975 9999999999999 99862
Q ss_pred --------hhcccccCCCccccccHHHHh---hChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHhhh-hhcccc-CCC
Q psy13233 586 --------FIQGIVDSDDLPLNVSRETLQ---QHKLLKVIRKKLIRKALDMFKKLDPETYKKFWAEYST-NMKLGV-IED 652 (704)
Q Consensus 586 --------~~q~v~d~~~~~~~~~r~ile---~h~iI~~l~~~i~~~~~d~~~~l~~e~~~~~~~~~~~-~~k~g~-~~d 652 (704)
.+|++.+...+..+.++++|+ +||||+.|++..... .-++..-+.++.+|++ .|-+|+ ++|
T Consensus 317 s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~Hpli~~L~~~~~~d------~~~~~~~~~~~lLyd~AlL~~G~~l~D 390 (448)
T 3q6m_A 317 TANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEAD------KNDKSVKDLVILLYETALLSSGFSLED 390 (448)
T ss_dssp CHHHHHHCCC--------------CEEEEECTTCHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred hHHHHHHHHHhhccccccccccccCceeEECCCCHHHHHHHHHhhcc------cchhHHHHHHHHHHHhHHhcCCCCCCC
Confidence 122223332233333454555 999999998765321 1122344678999999 668887 899
Q ss_pred h-hhHHHHhhhhcc
Q psy13233 653 P-ANRSRLAKLLMF 665 (704)
Q Consensus 653 ~-~~~~~~~~llrf 665 (704)
| ++..||.+||.-
T Consensus 391 P~~f~~ri~~ll~~ 404 (448)
T 3q6m_A 391 PQTHANRIYRMIKL 404 (448)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 9 889999999974
No 7
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-68 Score=579.27 Aligned_cols=321 Identities=36% Similarity=0.604 Sum_probs=271.9
Q ss_pred CCCcccCCCCCCCHHHHHHHHhhhcCCCCCCceeEeeeeccccceeEEEEecCCCCCccccccccccccchhhH------
Q psy13233 333 NKPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSFNRYGTTTDNIKNEL------ 406 (704)
Q Consensus 333 ~~~~w~r~~~~vt~eey~~fyk~~~~~~~~~l~~~hf~~eg~~~~~~~l~vp~~~p~d~~~~~~~~~~~ik~~v------ 406 (704)
++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+++|+|+|++. ..+++||+||
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~-~~~~~ikLYvrrVfI~ 79 (405)
T 2cge_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESK-KKKNNIKLYVRRVFIT 79 (405)
T ss_dssp CCCGGGSCGGGSCTTHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCSSCSSSSC-CCCCCCEEEETTEEEE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHhcCCCcCCeeEEEeccCCCcceeEEEEecCCCchhhhhhh-hccCCeEEEEeeeEec
Confidence 479999999999999999999999999999999999999999999999999999999999862 3467787776
Q ss_pred --------------------------------------HHHHHHHHHHHHHHhhhhh--------ccccccccccccccc
Q psy13233 407 --------------------------------------KKIELKLKKVIMRNILLTI--------QINVFSFSMKLGVIE 440 (704)
Q Consensus 407 --------------------------------------kki~~~I~k~v~~kl~~~~--------~~~~fg~~lK~G~~e 440 (704)
++|+++|+|+|.+.|.+++ +|++||++||+|+++
T Consensus 80 d~~~~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~~~l~kkvl~~L~~la~~~e~y~kf~~~fg~~lK~G~~e 159 (405)
T 2cge_A 80 DEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVHE 159 (405)
T ss_dssp SSCSSSSCGGGTTCEEEEEESSCCSSCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhChHHHHHHhhcccccccCcccChhhhcccHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHhhhhhcchhcc
Confidence 5678888899998888775 499999999999999
Q ss_pred CcccHHHHHhhhcccccCC-CCCccHHHHHhhcCCCCCeEEEEEcCCHHHHhcChHHHHHHHcCceEEEeccchhHHHhh
Q psy13233 441 DPANRSRLAKLLMFQSSSS-TEPTSLSDYVKRMKPKQDHIYYIAGASRKEVESSPFVERLLRKGYEILYLVEAVDEYTLS 519 (704)
Q Consensus 441 D~~nrekL~~LlrF~Ss~~-~~~~SLdeYv~rmke~Qk~IYYltg~s~~~~~~SP~lE~~k~kG~EVL~l~dpIDe~~i~ 519 (704)
|+.||++|++||||+||.+ ++++||+||++|||++|+.|||+||+|++++++|||+|.|++||||||+|+|||||+||+
T Consensus 160 D~~~~~~l~~lLrF~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~~E~~k~kG~EVL~l~d~iDe~~i~ 239 (405)
T 2cge_A 160 DTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFT 239 (405)
T ss_dssp CTTTHHHHHTTCEECBSSCSSSCEEHHHHHHTCCTTCCSEEEEECSCHHHHHTCTTHHHHHHHTCCEEEECSHHHHHHHH
T ss_pred CHHHHHHHHHhheeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcChHHHHHHhCCCEEEEecCchHHHHHH
Confidence 9999999999999999976 579999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCceeeccccccCcccchh-------hHHHHHHHHHHHHHhhcccceeEEEEEEccchhhhHHHHHh-------
Q psy13233 520 SLPEFEGKKFQNIAKEGLSISANKE-------KMEALKTLQLYTKSLLRGLCLYVRRVFITDEFTDMLPKYLS------- 585 (704)
Q Consensus 520 ~l~~f~gkkf~~V~k~~l~l~~~ee-------~~e~~~~l~~~~k~~l~~~~~~V~~V~IS~rl~d~~P~~l~------- 585 (704)
+|.+|+|++|++|+++ ++++++++ .++++++|++|++++|++. |.+|++|.|++++ |||+.
T Consensus 240 ~L~e~~gk~~~sV~~~-l~l~~~e~~~~~~~~~~~~~~~L~~~~k~~L~~~---v~~V~~s~rl~~s-P~~lv~~~~~~s 314 (405)
T 2cge_A 240 QLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGDQ---VEKVVVSYKLLDA-PAAIRTGQFGWS 314 (405)
T ss_dssp HHCBSSSBEEESSBCC-CCSSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTS---CSEEEECSSCCSS-SEEEEECSSSCC
T ss_pred HHHHhCCceeEEcccc-ccccccchhhhhhhHhHHHHHHHHHHHHHHhcCc---ceEEEEEeccCCC-CeEEEecccccc
Confidence 9999999999999999 98865432 1457888999999999986 9999999999998 99872
Q ss_pred -------hhcccccCCCccccccHHHHh---hChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHhhh-hhcccc-CCCh
Q psy13233 586 -------FIQGIVDSDDLPLNVSRETLQ---QHKLLKVIRKKLIRKALDMFKKLDPETYKKFWAEYST-NMKLGV-IEDP 653 (704)
Q Consensus 586 -------~~q~v~d~~~~~~~~~r~ile---~h~iI~~l~~~i~~~~~d~~~~l~~e~~~~~~~~~~~-~~k~g~-~~d~ 653 (704)
.+|++.+.+.+..+..+.+|+ +||||+.|++.....- .-++..-+.++.+|++ .|-.|+ ++||
T Consensus 315 ~~mer~~k~~~~~~~~~~~~~~~k~~LeiNp~Hpli~~L~~~~~~~~-----~~~~~~~~~~~~Lyd~AlL~~G~~~~dp 389 (405)
T 2cge_A 315 ANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGG-----AQDKTVKDLTKLLYETALLTSGFSLDEP 389 (405)
T ss_dssp HHHHHHHHHHHTTSSSCCCCCCCCEEEEECTTSHHHHHHHHHHTTTG-----GGCHHHHHHHHHHHHHHHHHTTCCCSCH
T ss_pred HHHHHHHHHhhccccccccccccCeeEEEcCCCHHHHHHHHhhhccc-----cCHHHHHHHHHHHHHHHHHhCCCCcccH
Confidence 133333333222223344444 9999999865432100 0122334678899999 567787 9999
Q ss_pred -hhHHHHhhhhc
Q psy13233 654 -ANRSRLAKLLM 664 (704)
Q Consensus 654 -~~~~~~~~llr 664 (704)
++.+|+.+||.
T Consensus 390 ~~f~~r~~~ll~ 401 (405)
T 2cge_A 390 TSFASRINRLIS 401 (405)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 88999999985
No 8
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=100.00 E-value=1.1e-66 Score=543.13 Aligned_cols=265 Identities=52% Similarity=0.830 Sum_probs=233.9
Q ss_pred HHHHhhhccccchHhhHHHHHHHHHhcCCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEE
Q psy13233 55 LEELRKKAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKML 134 (704)
Q Consensus 55 ~~~~~~~~e~~~Fqaev~~Ll~LL~~sLYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L 134 (704)
-.++++..+++.||+|+++||+||+++||+|+++|||||||||+|||+++||+++++|++++..+++.|+|.+|+++++|
T Consensus 16 ~~~~~~~~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~~tL 95 (281)
T 3peh_A 16 FQGPTESMESHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNIL 95 (281)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEE
T ss_pred HHHHhhccceeeehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCCcEE
Confidence 34567888999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred EEEeCCCCCCHHHHHHhhchhhccChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEe
Q psy13233 135 HIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWES 214 (704)
Q Consensus 135 ~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes 214 (704)
+|.|||+|||+++|.++|++||+||++.|+++++.+. .+ .++|||||||||||||||++|+|+||++++.+|.|+|
T Consensus 96 tI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~---~d-~~~IGqFGVGFySaf~vadkV~V~Sk~~~~~~~~Wes 171 (281)
T 3peh_A 96 SITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSG---GD-MSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWES 171 (281)
T ss_dssp EEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTT---CC-STTTTTTTCGGGGGGGTEEEEEEEEECTTSCCEEEEE
T ss_pred EEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccc---cc-cccccccCccchhhccccCEEEEEEecCCCCEEEEEE
Confidence 9999999999999999999999999999999997621 34 7899999999999999999999999999888999999
Q ss_pred cC-CceEEEeCCCCCCCCCccEEEEEeccchhccCCHHHHHHHHHHhcccCCcceEEeccccccccCCcccccccCCcch
Q psy13233 215 DA-SSFSIVNDPRGDNLKRGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDE 293 (704)
Q Consensus 215 ~g-g~f~I~~~~~~~~~~~GT~I~L~Lked~~e~l~~~~lk~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~ 293 (704)
+| +.|+|.+++++++.++||+|+|||++++.+|+++++|+++|++||+||+|||+|+.+++++++++++++++++
T Consensus 172 ~g~g~fti~~~~~~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~l~~~k~~~~ev~~~~~~~~~---- 247 (281)
T 3peh_A 172 TADAKFTIYKDPRGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIYLLHENVYTEEVLADIAKDMV---- 247 (281)
T ss_dssp ETTSCEEEEECTTCSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEEEEEEEEEEEEEEHHHHHHHT----
T ss_pred CCCccEEEEEcCCCCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceEEeeeeeeeeccCcchhhhcc----
Confidence 98 9999999765567899999999999999999999999999999999999999999999998888766543211
Q ss_pred hccccCcchhhhhhhhccccCccccceeeecccccccc
Q psy13233 294 EKKVEGDEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLN 331 (704)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~N 331 (704)
++++++++++++++++++|+||+++++|+|+++|
T Consensus 248 ----~~~~~~~~e~~~~~~~~~k~k~~~~~~~~~e~~n 281 (281)
T 3peh_A 248 ----NDPNYDSVKVEETDDPNKKTRTVEKKVKKWTLMN 281 (281)
T ss_dssp ----TCTTSSEEEECCCCCTTCCEEEEEEEEEEEEECC
T ss_pred ----ccccccccccccccccccCCcceEEEEEEeEecC
Confidence 1123445555544456778999999999999998
No 9
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8
Probab=100.00 E-value=1.6e-62 Score=511.50 Aligned_cols=227 Identities=42% Similarity=0.727 Sum_probs=189.9
Q ss_pred CCCcccCCCCCCCHHHHHHHHhhhcCCCCCCceeEeeeeccccceeEEEEecCCCCCccccccccccccchhhH------
Q psy13233 333 NKPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSFNRYGTTTDNIKNEL------ 406 (704)
Q Consensus 333 ~~~~w~r~~~~vt~eey~~fyk~~~~~~~~~l~~~hf~~eg~~~~~~~l~vp~~~p~d~~~~~~~~~~~ik~~v------ 406 (704)
++|||+|+|++||+|||.+|||++++||++||+|+||++||+++|+||||||+++|+|+|++. +.+++|++||
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~~H~~veg~~~~~~lLyiP~~ap~dl~~~~-~~~~~ikLYvrrVfI~ 79 (288)
T 1hk7_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESK-KKKNNIKLYVRRVFIT 79 (288)
T ss_dssp CCCGGGSCTTTCCTTHHHHHHHHHHSCCSCCSEEEEEEECSSSCEEEEEEECSSCCCCCSSSC-CCCCCCEEEETTEEEE
T ss_pred CCCcccCCchhCCHHHHHHHHHHhcCCcccCeeEEEEeccCCceeEEEEEecCCCcchhhhhh-hccCCeEEEEeeeEee
Confidence 479999999999999999999999999999999999999999999999999999999999862 3467888776
Q ss_pred --------------------------------------HHHHHHHHHHHHHHhhhhh--------ccccccccccccccc
Q psy13233 407 --------------------------------------KKIELKLKKVIMRNILLTI--------QINVFSFSMKLGVIE 440 (704)
Q Consensus 407 --------------------------------------kki~~~I~k~v~~kl~~~~--------~~~~fg~~lK~G~~e 440 (704)
++|+++|+|+|.+.|.++. +|++||++||+|+++
T Consensus 80 d~~~~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la~d~e~Y~kf~~~fg~~lK~Gi~e 159 (288)
T 1hk7_A 80 DEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVHE 159 (288)
T ss_dssp SSCSSSSCGGGTTCEEEEEESSCCCC-------CCHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhchHHHHHHhhcccccccCCcccHHHhccCHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHhHHHhhhhcc
Confidence 5668888888888888764 499999999999999
Q ss_pred CcccHHHHHhhhcccccCC-CCCccHHHHHhhcCCCCCeEEEEEcCCHHHHhcChHHHHHHHcCceEEEeccchhHHHhh
Q psy13233 441 DPANRSRLAKLLMFQSSSS-TEPTSLSDYVKRMKPKQDHIYYIAGASRKEVESSPFVERLLRKGYEILYLVEAVDEYTLS 519 (704)
Q Consensus 441 D~~nrekL~~LlrF~Ss~~-~~~~SLdeYv~rmke~Qk~IYYltg~s~~~~~~SP~lE~~k~kG~EVL~l~dpIDe~~i~ 519 (704)
|+.||++|++||||+||.+ ++++||+|||+||+++|+.|||+||+|++++++|||+|.|++||||||||+||||||||+
T Consensus 160 D~~nr~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kg~EVL~l~d~iDe~~i~ 239 (288)
T 1hk7_A 160 DTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFT 239 (288)
T ss_dssp CTTTHHHHHTTCCBEESSCSSSCBCHHHHHHHSCTTCCEEEEEECSSHHHHHTCGGGHHHHTTTCCCEEECSHHHHHHHH
T ss_pred cHHHHHHHHHHhccccccCCCCcccHHHHHhhCcCCCceEEEEeCCCHHHHhcCHHHHHHHHCCCEEEEecCchHHHHHh
Confidence 9999999999999999975 579999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCceeeccccccCcccchhh-------HHHHHHHHHHHHHhhc
Q psy13233 520 SLPEFEGKKFQNIAKEGLSISANKEK-------MEALKTLQLYTKSLLR 561 (704)
Q Consensus 520 ~l~~f~gkkf~~V~k~~l~l~~~ee~-------~e~~~~l~~~~k~~l~ 561 (704)
+|.+|+|++|++|+++ +++++++++ ++++++|+.|+|++|+
T Consensus 240 ~L~e~~gk~~~sv~k~-~~l~~~~eek~~~e~~~~~~~~L~~~~K~~L~ 287 (288)
T 1hk7_A 240 QLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILG 287 (288)
T ss_dssp HHCEETTEEEEETTTC---------------------------------
T ss_pred hhhhcCCceeeecccc-ccccchhhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999998 888653221 3467788888888775
No 10
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=100.00 E-value=2.5e-61 Score=498.65 Aligned_cols=211 Identities=44% Similarity=0.766 Sum_probs=190.9
Q ss_pred ccCCCcccCCCCCCCHHHHHHHHhhhcCCCCCCceeEeeeeccccceeEEEEecCCCCCccccccccccccchhhH----
Q psy13233 331 NDNKPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSFNRYGTTTDNIKNEL---- 406 (704)
Q Consensus 331 N~~~~~w~r~~~~vt~eey~~fyk~~~~~~~~~l~~~hf~~eg~~~~~~~l~vp~~~p~d~~~~~~~~~~~ik~~v---- 406 (704)
|+++|||+|+|++||+|||.+|||++++||++||+|+||++||+++|+||||||+++|+|+|++ ...+++||+||
T Consensus 1 ~~~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~-~~~~~~ikLYv~rVf 79 (268)
T 3pry_A 1 MKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFEN-KKKKNNIKLYVRRVF 79 (268)
T ss_dssp -CCSCGGGSCGGGCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCC---------CCCEEEEETTEE
T ss_pred CCCCCCCCCChhhCCHHHHHHHHHHhcCCccCchheeeecccCCeeEEEEEEccCCCchhhhhh-hhhcCCeeEEEEEEE
Confidence 5689999999999999999999999999999999999999999999999999999999999975 24567787775
Q ss_pred ----------------------------------------HHHHHHHHHHHHHHhhhhh--------ccccccccccccc
Q psy13233 407 ----------------------------------------KKIELKLKKVIMRNILLTI--------QINVFSFSMKLGV 438 (704)
Q Consensus 407 ----------------------------------------kki~~~I~k~v~~kl~~~~--------~~~~fg~~lK~G~ 438 (704)
++|+++|+|+|.+.|.++. +|++||++||+|+
T Consensus 80 I~d~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la~d~e~Y~~f~~~fg~~lK~G~ 159 (268)
T 3pry_A 80 IMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGI 159 (268)
T ss_dssp EESCCGGGSCGGGTTCEEEEEESSSCSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred eecchhhhccchhhheEEEecCCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhHh
Confidence 5668888888888888765 4999999999999
Q ss_pred ccCcccHHHHHhhhcccccCC-CCCccHHHHHhhcCCCCCeEEEEEcCCHHHHhcChHHHHHHHcCceEEEeccchhHHH
Q psy13233 439 IEDPANRSRLAKLLMFQSSSS-TEPTSLSDYVKRMKPKQDHIYYIAGASRKEVESSPFVERLLRKGYEILYLVEAVDEYT 517 (704)
Q Consensus 439 ~eD~~nrekL~~LlrF~Ss~~-~~~~SLdeYv~rmke~Qk~IYYltg~s~~~~~~SP~lE~~k~kG~EVL~l~dpIDe~~ 517 (704)
++|..||++|++||||+||.+ ++++||+|||+|||++|+.|||+||+|++++++|||+|.|++||||||||+|||||+|
T Consensus 160 ~eD~~~~~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Q~~IyYitg~s~~~~~~sp~~E~~k~kg~EVL~l~d~iDe~~ 239 (268)
T 3pry_A 160 HEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYC 239 (268)
T ss_dssp HHCGGGHHHHHHTCEEEETTTTTSCEEHHHHHHTSCTTCCEEEEECSCCHHHHHTCHHHHHHHTTTCCEEECCSTTHHHH
T ss_pred hCCHHHHHHHHHHheeeeccCCCccEeHHHHHHhcccCCceEEEEeCCCHHHHHhChHHHHHHHcCceEEEeCCchHHHH
Confidence 999999999999999999975 4799999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccCCceeeccccccCcccc
Q psy13233 518 LSSLPEFEGKKFQNIAKEGLSISAN 542 (704)
Q Consensus 518 i~~l~~f~gkkf~~V~k~~l~l~~~ 542 (704)
|++|.+|+||+|+||++++++|+++
T Consensus 240 i~~L~ef~gk~l~sv~k~~l~l~e~ 264 (268)
T 3pry_A 240 VQQLKEFDGKSLVSVTKEGLELAEN 264 (268)
T ss_dssp HHHHCEETTEEEEETTCSSCCCCCC
T ss_pred HHHHHhcCCceeeecccccCCCccc
Confidence 9999999999999999999998753
No 11
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=100.00 E-value=6.1e-61 Score=502.76 Aligned_cols=233 Identities=35% Similarity=0.567 Sum_probs=188.4
Q ss_pred CCCcccCCCCCCCHHHHHHHHhhhcCCCCCCceeEeeeeccccceeEEEEecCCCCCccccccccccccchhhH------
Q psy13233 333 NKPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSFNRYGTTTDNIKNEL------ 406 (704)
Q Consensus 333 ~~~~w~r~~~~vt~eey~~fyk~~~~~~~~~l~~~hf~~eg~~~~~~~l~vp~~~p~d~~~~~~~~~~~ik~~v------ 406 (704)
.+|||+|+|++||+|||.+|||++++||++||+|+||++||+++|+||||||+++|+|+|++ ..+++||+||
T Consensus 2 ~~plW~r~~~eit~EeY~eFYk~l~~d~~dPL~~iH~~vEg~~~~~~lLyiP~~ap~dl~~~--~~~~~ikLYvrrVfI~ 79 (303)
T 2gq0_A 2 AQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNR--DHKHGLKLYVQRVFIM 79 (303)
T ss_dssp CCCGGGSCGGGSCHHHHHHHHHHHHTCCSCCSEEEEEEECSSSCEEEEEEECSSCCTTTTST--TCCCSEEEEETTEEEE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHHcCCccCcceeEEeccccccceeEEEEecCCCCchhhhh--hccCCeEEEEeceEee
Confidence 47999999999999999999999999999999999999999999999999999999999985 3467888776
Q ss_pred --------------------------------------HHHHHHHHHHHHHHhhhhh---------cccccccccccccc
Q psy13233 407 --------------------------------------KKIELKLKKVIMRNILLTI---------QINVFSFSMKLGVI 439 (704)
Q Consensus 407 --------------------------------------kki~~~I~k~v~~kl~~~~---------~~~~fg~~lK~G~~ 439 (704)
++|+++|+|+|.+.|.++. +|++||++||+|++
T Consensus 80 D~~eeLlP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~Irk~l~kKvl~~L~~la~~d~e~Y~kF~~~fg~~lK~Gi~ 159 (303)
T 2gq0_A 80 DDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPA 159 (303)
T ss_dssp EEEGGGSCGGGTTCEEEEEESSSCTTCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTHHH
T ss_pred cchhhhchHHHHHhhcccccccCCcccchHhhcccHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhh
Confidence 5678888888888888764 49999999999999
Q ss_pred cCcccHHHHHhhhcccccCC---CCCccHHHHHhhcCCCCCeEEEEEcCCHHHHhcChHHHHHHHcCceEEEeccchhHH
Q psy13233 440 EDPANRSRLAKLLMFQSSSS---TEPTSLSDYVKRMKPKQDHIYYIAGASRKEVESSPFVERLLRKGYEILYLVEAVDEY 516 (704)
Q Consensus 440 eD~~nrekL~~LlrF~Ss~~---~~~~SLdeYv~rmke~Qk~IYYltg~s~~~~~~SP~lE~~k~kG~EVL~l~dpIDe~ 516 (704)
+|+.||++|++||||+||.+ ++++||+||++|||++|+.|||++|+|++++++|||+|.|++||||||+|+|||||+
T Consensus 160 eD~~nr~~l~~LLrF~Ss~~~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp~lE~~k~kG~EVL~l~d~iDe~ 239 (303)
T 2gq0_A 160 EDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEW 239 (303)
T ss_dssp HCGGGHHHHHTTCCBEETTTTCCCCCBCHHHHHHTCCTTCCSEEEEECSSHHHHHTCGGGHHHHHHTCCEEEECSTTHHH
T ss_pred cCHHHHHHHHHhheeeecCCCccCCeeeHHHHHHhcccCCceEEEEeCCCHHHHhcChHHHHHHHCCCeEEEeCchhHHH
Confidence 99999999999999999975 379999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccCCceeeccccccCcccchhhHHHHHHHHHHHHHhhcccceeEE--EEEEccchhhhHHHHH
Q psy13233 517 TLSSLPEFEGKKFQNIAKEGLSISANKEKMEALKTLQLYTKSLLRGLCLYVR--RVFITDEFTDMLPKYL 584 (704)
Q Consensus 517 ~i~~l~~f~gkkf~~V~k~~l~l~~~ee~~e~~~~l~~~~k~~l~~~~~~V~--~V~IS~rl~d~~P~~l 584 (704)
||++|.+|+|++|++|+++++++++.++ ..|+ ..|. +|.||+|+..+ |+++
T Consensus 240 ~i~~L~e~~gk~f~sV~k~~l~l~~~~~-------------~~l~---~~~~~~~~~~~~~~~s~-~~~~ 292 (303)
T 2gq0_A 240 MMNYLTEFDGKPFQSVSKVDESLEKLAD-------------GDLG---TLVPRGSMAISDPNSSS-VDKL 292 (303)
T ss_dssp HTTTCCEETTEEEEETTC----------------------------------------------------
T ss_pred HHHHHHhcCCcceEEeeccccCccccch-------------hhhc---cccccCCccccCcCCcc-hHHH
Confidence 9999999999999999999999875431 1223 3466 89999999987 9885
No 12
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=100.00 E-value=1e-60 Score=497.66 Aligned_cols=266 Identities=65% Similarity=1.063 Sum_probs=206.9
Q ss_pred hhccccchHhhHHHHHHHHHhcCCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeC
Q psy13233 60 KKAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDS 139 (704)
Q Consensus 60 ~~~e~~~Fqaev~~Ll~LL~~sLYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DN 139 (704)
...++|.||+++++||+||+++||+|+++|||||||||+||++++||+++++|++++..+++.|+|.+|.+.++|+|.||
T Consensus 3 ~~~e~~~Fqaei~~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~I~Dn 82 (269)
T 1qy5_A 3 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDT 82 (269)
T ss_dssp -CEEEECCCHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEEC
T ss_pred CcccceeehhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCceEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999988888889999999998999999999
Q ss_pred CCCCCHHHHHHhhchhhccChhhHHHhhhhhhccc-ccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCc
Q psy13233 140 GIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIK-HDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASS 218 (704)
Q Consensus 140 GiGMT~~eL~~~LgtIa~Sgt~~f~~~l~~~~~~~-~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~ 218 (704)
|+|||+++|.++|++||+||++.|+++++.+.... .+ ..+||||||||||+||||++|+|.||++++.++.|++++|.
T Consensus 83 GiGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d-~~~IG~fGvGfySaf~va~~v~V~Sk~~~~~~~~w~s~gg~ 161 (269)
T 1qy5_A 83 GVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQST-SELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNE 161 (269)
T ss_dssp SCCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCC-HHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSC
T ss_pred CCCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccc-hhhcCCccccHHHHhhccceEEEEEEecCCcEEEEEEeCCE
Confidence 99999999999999999999999999887541000 23 67999999999999999999999999997789999998899
Q ss_pred eEEEeCCCCCCCCCccEEEEEeccchhccCCHHHHHHHHHHhcccCCcceEEeccccccccCCcccccccCCcchhcccc
Q psy13233 219 FSIVNDPRGDNLKRGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEKKVE 298 (704)
Q Consensus 219 f~I~~~~~~~~~~~GT~I~L~Lked~~e~l~~~~lk~likkys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (704)
|+|.+.+.+....+||+|+|||++++.+|++.++|+++|++||+||+|||+|+.+++++++++++++++++.+ + ++
T Consensus 162 ~~i~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~~~~~~~~~---~-~~ 237 (269)
T 1qy5_A 162 FSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEEAAKEE---K-ED 237 (269)
T ss_dssp EEEEECTTCSCSSSEEEEEEEECGGGGGGGSHHHHHHHHHTTCTTCSSCEEEEEECC-----------------------
T ss_pred EEEEeccCCCcCCCCeEEEEEEcccchhhhhHHHHHHHHHhhhcccceeeEEeeeeeeeeccCccchhhhhhc---c-cc
Confidence 9999864334568999999999999999999999999999999999999999999988877766554321111 1 11
Q ss_pred CcchhhhhhhhccccCccccceeeecccccccc
Q psy13233 299 GDEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLN 331 (704)
Q Consensus 299 ~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~N 331 (704)
+++.++++++ +++++||+|++++++|+|+++|
T Consensus 238 ~~~~~~~~~~-~~~~~~k~k~~~~~~~~~e~~n 269 (269)
T 1qy5_A 238 SDDEAAVEEE-EEEKKPKTKKVEKTVWDWELMN 269 (269)
T ss_dssp -----------------------CCCEEEEECC
T ss_pred cccccccccc-cccccccCCceEEEEeeeEecC
Confidence 1223334332 2334688999999999999998
No 13
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A
Probab=100.00 E-value=2.1e-60 Score=490.27 Aligned_cols=204 Identities=45% Similarity=0.770 Sum_probs=189.9
Q ss_pred ccCCCcccCCCCCCCHHHHHHHHhhhcCCCCCCceeEeeeeccccceeEEEEecCCCCCccccccccccccchhhH----
Q psy13233 331 NDNKPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSFNRYGTTTDNIKNEL---- 406 (704)
Q Consensus 331 N~~~~~w~r~~~~vt~eey~~fyk~~~~~~~~~l~~~hf~~eg~~~~~~~l~vp~~~p~d~~~~~~~~~~~ik~~v---- 406 (704)
|+.+|||+|+|++||+|||.+|||++++||++||+|+||++||+++|+||||||+++|+|+|++. ..+++||+||
T Consensus 1 N~~~plW~r~~~eit~EeY~eFYk~l~~d~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~-~~~~~ikLYvrrVf 79 (260)
T 1usu_A 1 GPTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESK-KKKNNIKLYVRRVF 79 (260)
T ss_dssp -CCCCGGGSCGGGCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCTTTTCC-----CCEEEEETTEE
T ss_pred CCcCCcccCCcccCCHHHHHHHHHHhcCCccCCeeEEEeeccCcceeEEEEEecCCCchhhhhhh-hccCCeEEEEeeeE
Confidence 88999999999999999999999999999999999999999999999999999999999999862 3467787775
Q ss_pred ----------------------------------------HHHHHHHHHHHHHHhhhhh--------ccccccccccccc
Q psy13233 407 ----------------------------------------KKIELKLKKVIMRNILLTI--------QINVFSFSMKLGV 438 (704)
Q Consensus 407 ----------------------------------------kki~~~I~k~v~~kl~~~~--------~~~~fg~~lK~G~ 438 (704)
++|+++|+|+|.+.|.++. +|++||++||+|+
T Consensus 80 I~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l~kkvl~~l~~la~d~e~y~~f~~~fg~~lK~G~ 159 (260)
T 1usu_A 80 ITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQFEKFYSAFSKNIKLGV 159 (260)
T ss_dssp EESCCTTSSCGGGTTCEEEEEESSCCSCC------CCHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred eccchhhhchHHHHHheeccccCCcCCccCHHHhcccHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhhhhcchh
Confidence 5678888888888888775 4999999999999
Q ss_pred ccCcccHHHHHhhhcccccCC-CCCccHHHHHhhcCCCCCeEEEEEcCCHHHHhcChHHHHHHHcCceEEEeccchhHHH
Q psy13233 439 IEDPANRSRLAKLLMFQSSSS-TEPTSLSDYVKRMKPKQDHIYYIAGASRKEVESSPFVERLLRKGYEILYLVEAVDEYT 517 (704)
Q Consensus 439 ~eD~~nrekL~~LlrF~Ss~~-~~~~SLdeYv~rmke~Qk~IYYltg~s~~~~~~SP~lE~~k~kG~EVL~l~dpIDe~~ 517 (704)
++|+.||++|++||||+||.+ ++++||+||++|||++|+.|||+||+|++++++|||+|.|++||||||||+|||||||
T Consensus 160 ~eD~~n~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~lE~~k~kg~EVL~l~d~iDe~~ 239 (260)
T 1usu_A 160 HEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEVLFLTDPIDEYA 239 (260)
T ss_dssp HHCTTTHHHHHTTCEEEETTEEEEEEEHHHHHHTSCTTCCEEEEEECSSHHHHHTCTTHHHHHHTTCCEEEECSHHHHHH
T ss_pred ccCHHHHHHHHHhhEeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchHHHH
Confidence 999999999999999999975 5799999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccCCceeecccc
Q psy13233 518 LSSLPEFEGKKFQNIAKE 535 (704)
Q Consensus 518 i~~l~~f~gkkf~~V~k~ 535 (704)
|++|.+|+|++|++|+++
T Consensus 240 i~~L~e~~gk~~~sv~k~ 257 (260)
T 1usu_A 240 FTQLKEFEGKTLVDITKD 257 (260)
T ss_dssp HHHHCEETTEEEEETTCC
T ss_pred HHHHHhhCCceEEecccc
Confidence 999999999999999998
No 14
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=100.00 E-value=2.7e-59 Score=479.59 Aligned_cols=207 Identities=55% Similarity=0.877 Sum_probs=189.0
Q ss_pred hhccccchHhhHHHHHHHHHhcCCCCChhhHHHhHHhHHHHHHHHHhhcccCCCcc------------------------
Q psy13233 60 KKAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVL------------------------ 115 (704)
Q Consensus 60 ~~~e~~~Fqaev~~Ll~LL~~sLYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~------------------------ 115 (704)
...|++.||||+++||+||+|+||||++||||||||||+|||+|+| +++++|+++
T Consensus 22 ~~~e~~~Fqae~~~ll~li~~slYs~keiFlRELISNasDA~dK~r-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (272)
T 3ied_A 22 SPVEKYNFKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKR-IILENNKLIKDAEVVTNEEIKNETEKEKTENVN 100 (272)
T ss_dssp EECEEEECCHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC-------------------
T ss_pred cccceechHHHHHHHHHHHHhhcCCCHHHHHHHHHHhhHHHHHHHH-HhccChhhhhccccccccccccccccccccccc
Confidence 4568999999999999999999999999999999999999999999 888877644
Q ss_pred -------------CCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHhhhhhhccccccccccc
Q psy13233 116 -------------DANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIG 182 (704)
Q Consensus 116 -------------~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l~~~~~~~~d~~~~IG 182 (704)
+..+++.|+|.+|+++++|+|.|||+|||++||.++|++||+||+++|+++++++. .+ ..+||
T Consensus 101 ~~~~~~~~~~e~~~~~~~l~I~I~~Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~---~d-~~~IG 176 (272)
T 3ied_A 101 ESTDKKENVEEEKNDIKKLIIKIKPDKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGK---AD-SNLIG 176 (272)
T ss_dssp -------------CGGGGCCEEEEEETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTS---SC-TTCGG
T ss_pred cccccccccccccCCCCCcEEEEEEeCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhccc---cc-ccccC
Confidence 23356899999999999999999999999999999999999999999999987652 23 78999
Q ss_pred ccccceeeeeeecCEEEEEEEeCCCCcEEEEecC-CceEEEeCC-----CCCCCCCccEEEEEeccchhccCCHHHHHHH
Q psy13233 183 QFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDA-SSFSIVNDP-----RGDNLKRGTQISLELKEEASDFLEVNTLKDL 256 (704)
Q Consensus 183 qFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~g-g~f~I~~~~-----~~~~~~~GT~I~L~Lked~~e~l~~~~lk~l 256 (704)
|||||||||||||++|+|+|| +++.+|.|+|+| |+|+|.+++ .++..+|||+|+|||++++.+|+++++|+++
T Consensus 177 qFGVGFySaFmVAdkV~V~Sk-~dd~~~~WeS~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~le~~~ik~l 255 (272)
T 3ied_A 177 QFGVGFYSSFLVSNRVEVYTK-KEDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDYKLKEL 255 (272)
T ss_dssp GSCCGGGGGGGTEEEEEEEEE-SSSCEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGGGGGSHHHHHHH
T ss_pred cccceeheeeccCCEEEEEEc-CCCceEEEEECCCCCEEEEECcccccccCCCCCCCcEEEEEECCChHHhcCHHHHHHH
Confidence 999999999999999999999 677899999999 999999875 3456799999999999999999999999999
Q ss_pred HHHhcccCCcceEEec
Q psy13233 257 IKKYSQFINFPIYIWS 272 (704)
Q Consensus 257 ikkys~fi~~PI~l~~ 272 (704)
|++||+||+|||+||.
T Consensus 256 ikkys~fi~~PI~l~~ 271 (272)
T 3ied_A 256 IKKYSEFIKFPIEIWS 271 (272)
T ss_dssp HHHHCTTCCSCEEECC
T ss_pred HHHHHhCCCCCeEEEe
Confidence 9999999999999985
No 15
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=100.00 E-value=3.3e-58 Score=470.41 Aligned_cols=212 Identities=55% Similarity=0.884 Sum_probs=197.3
Q ss_pred hccccchHhhHHHHHHHHHhcCCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCC
Q psy13233 61 KAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSG 140 (704)
Q Consensus 61 ~~e~~~Fqaev~~Ll~LL~~sLYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNG 140 (704)
..|++.||+|+++||+||+++||+|+++|||||||||+||++++||+++++|+.++..+++.|+|.+|+++++|+|.|||
T Consensus 15 ~~e~~~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnG 94 (239)
T 3nmq_A 15 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTG 94 (239)
T ss_dssp CCEEEECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred cceeEeehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCccEEEEEeCC
Confidence 46899999999999999999999999999999999999999999999999999888888999999999999999999999
Q ss_pred CCCCHHHHHHhhchhhccChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecC-Cce
Q psy13233 141 IGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDA-SSF 219 (704)
Q Consensus 141 iGMT~~eL~~~LgtIa~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~g-g~f 219 (704)
+|||++||.++|++||+||++.|+++++.+ .+ ..+||||||||||+|||||+|+|.||++++.++.|+|++ +.|
T Consensus 95 iGMt~edL~~~LgtIA~Sgtk~f~e~~~~~----~d-~~~IGqFGvGfySaf~vadkv~V~Sk~~~~~~~~W~s~~~g~f 169 (239)
T 3nmq_A 95 IGMTKADLINNLGTIAKSGTKAFMEALQAG----AD-ISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSF 169 (239)
T ss_dssp CCCCHHHHHTHHHHHHHHHHHHHHHHHHTT----CC-GGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSTTEE
T ss_pred CCCCHHHHHHHHHHHhcccchhhhhhhccc----CC-cccccccCcccccccccCCEEEEEEeeCCCceeEEEECCCCcE
Confidence 999999999999999999999999988754 34 789999999999999999999999999888899999998 899
Q ss_pred EEEeCCCCCCCCCccEEEEEeccchhccCCHHHHHHHHHHhcccCCcceEEeccccccc
Q psy13233 220 SIVNDPRGDNLKRGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQV 278 (704)
Q Consensus 220 ~I~~~~~~~~~~~GT~I~L~Lked~~e~l~~~~lk~likkys~fi~~PI~l~~~~~~~~ 278 (704)
+|.+++ +++..|||+|+|||++++.+|+++++|+++|++||+||+|||+++.++++++
T Consensus 170 ti~~~~-~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~~~~~~~~~~ 227 (239)
T 3nmq_A 170 TVRADH-GEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREK 227 (239)
T ss_dssp EEEECC-SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEEECCCSCC--
T ss_pred EEEecC-CCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceEEeeeeeccH
Confidence 999864 4567899999999999999999999999999999999999999988765443
No 16
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=100.00 E-value=9.5e-58 Score=472.56 Aligned_cols=206 Identities=30% Similarity=0.583 Sum_probs=183.8
Q ss_pred ccCCCcccCCCCCCCHHHHHHHHhhhcCCCCCCceeEeeeeccccceeEEEEecCCCCCccccc-cccccccchhhH---
Q psy13233 331 NDNKPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSFNR-YGTTTDNIKNEL--- 406 (704)
Q Consensus 331 N~~~~~w~r~~~~vt~eey~~fyk~~~~~~~~~l~~~hf~~eg~~~~~~~l~vp~~~p~d~~~~-~~~~~~~ik~~v--- 406 (704)
|+.+|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||++||+|+|++ +...+++||+||
T Consensus 1 N~~~plW~r~~~eit~eeY~eFYk~l~~~~~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~~~ikLYvrrV 80 (263)
T 1y6z_A 1 GHQLPIWKQDEKSLTENDYYSFYKNTFKAYDDPLAYVHFNVEGQISFNSILYIPGSLPWELSKNMFDEESRGIRLYVKRV 80 (263)
T ss_dssp ----CGGGSCTTSCCHHHHHHHHHHHHTCCSCCSEEEEEEEESSSEEEEEEEECSSCCHHHHHCCC----CCEEEEETTE
T ss_pred CCcCCCcCCCcccCCHHHHHHHHHHhcCCccCcceeEEeccCCccceEEEEEecCCCchhhhhhhhHhhhcCeeEEEeee
Confidence 7899999999999999999999999999999999999999999999999999999999999875 234567888886
Q ss_pred -----------------------------------------HHHHHHHHHHHHHHhhhhh---------ccccccccccc
Q psy13233 407 -----------------------------------------KKIELKLKKVIMRNILLTI---------QINVFSFSMKL 436 (704)
Q Consensus 407 -----------------------------------------kki~~~I~k~v~~kl~~~~---------~~~~fg~~lK~ 436 (704)
++|+++|+|+|.+.|.++. +|++||++||+
T Consensus 81 fI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~kkvl~~l~~la~~d~e~y~kf~~~fg~~lK~ 160 (263)
T 1y6z_A 81 FINDKFSESIPRWLTFLRGIVDSENLPLNVGREILQKSKMLSIINKRIVLKSISMMKGLKETGGDKWTKFLNTFGKYLKI 160 (263)
T ss_dssp EEESCGGGGSCGGGTTCEEEEEECC------------CTTHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH
T ss_pred EeecchhhhchHHHHHHeeccccccCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHcc
Confidence 4556777777777776654 39999999999
Q ss_pred ccccCcccHHHHHhhhcccccCC-CCCccHHHHHhhcCCCCCeEEEEEcCCHHHHhcChHHHHHHHcCceEEEeccchhH
Q psy13233 437 GVIEDPANRSRLAKLLMFQSSSS-TEPTSLSDYVKRMKPKQDHIYYIAGASRKEVESSPFVERLLRKGYEILYLVEAVDE 515 (704)
Q Consensus 437 G~~eD~~nrekL~~LlrF~Ss~~-~~~~SLdeYv~rmke~Qk~IYYltg~s~~~~~~SP~lE~~k~kG~EVL~l~dpIDe 515 (704)
|+++|+.||++|++||||+||.+ ++++||+||++|||++|+.|||++|+|++++++|||+|.|++||||||+|++||||
T Consensus 161 G~~eD~~~~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~sp~~E~~~~kg~EVL~l~~~iDe 240 (263)
T 1y6z_A 161 GVVEDKENQEEIASLVEFYSINSGDKKTDLDSYIENMKEDQKCIYYISGENKKTAQNSPSLEKLKALNYDVLFSLEPIDE 240 (263)
T ss_dssp HHHHCGGGHHHHHTTCEECBTTTTTSCEEHHHHHHTCCTTCCSEEEEECSSHHHHHTCGGGHHHHHHTCCCEEECSHHHH
T ss_pred ccccCHHHHHHHHHhheeeeccCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcCcHHHHHHhCCCeEEEeCCcHHH
Confidence 99999999999999999999975 47999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcc--ccccCCceeeccccc
Q psy13233 516 YTLSSL--PEFEGKKFQNIAKEG 536 (704)
Q Consensus 516 ~~i~~l--~~f~gkkf~~V~k~~ 536 (704)
+||++| .+|+|++|++|++++
T Consensus 241 ~~i~~L~~~e~~gk~~~sv~k~~ 263 (263)
T 1y6z_A 241 FCLSSLTVNKYKGYEVLDVNKAD 263 (263)
T ss_dssp HHHHHHHHHCBTTBCEEETTCC-
T ss_pred HHHHHhhhhccCCceEEecCCCC
Confidence 999999 599999999999974
No 17
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=100.00 E-value=2.6e-53 Score=438.22 Aligned_cols=217 Identities=53% Similarity=0.865 Sum_probs=194.0
Q ss_pred hhccccchHhhHHHHHHHHHhcCCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeC
Q psy13233 60 KKAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDS 139 (704)
Q Consensus 60 ~~~e~~~Fqaev~~Ll~LL~~sLYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DN 139 (704)
++.|++.||+|+++||++|+++||+|+++|||||||||+||++++||+++++|+.+...+++.|+|.+|.+.++|+|.||
T Consensus 35 ~~~e~~~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~Dn 114 (256)
T 3o0i_A 35 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDT 114 (256)
T ss_dssp -CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEEC
T ss_pred ccceeEEeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecC
Confidence 35689999999999999999999999999999999999999999999999999988888899999999998999999999
Q ss_pred CCCCCHHHHHHhhchhhccChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecC-Cc
Q psy13233 140 GIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDA-SS 218 (704)
Q Consensus 140 GiGMT~~eL~~~LgtIa~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~g-g~ 218 (704)
|+|||++||..+|++||+||++.|++.++.+ .+ ...||+||+||||+|||||+|+|+||++++.++.|++++ +.
T Consensus 115 G~GMt~edl~~~l~~ia~S~~~~f~~~L~~~----~~-~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~~~g~~w~s~gg~~ 189 (256)
T 3o0i_A 115 GIGMTKADLINNLGTIAKSGTKAFMEALQAG----AD-ISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGS 189 (256)
T ss_dssp SCCCCHHHHHTHHHHHHHHHHHHHHHHHHTT----CC-GGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTE
T ss_pred CCCcCHHHHHHHHHhhccccccchhhhhccc----CC-ccccCCCcchHHHhhccCCeEEEEEcCCCCceEEEEEeccce
Confidence 9999999999999999999999998887643 23 689999999999999999999999999887899999998 89
Q ss_pred eEEEeCCCCCCCCCccEEEEEeccchhccCCHHHHHHHHHHhcccCCcceEEeccccccccCCc
Q psy13233 219 FSIVNDPRGDNLKRGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPI 282 (704)
Q Consensus 219 f~I~~~~~~~~~~~GT~I~L~Lked~~e~l~~~~lk~likkys~fi~~PI~l~~~~~~~~~~~~ 282 (704)
|+|.+.+ +...++||+|+|+||.+..+|++.++|+++|++||+||++||+++.++++++++++
T Consensus 190 ~~v~~~~-~~~~~~GT~I~l~LK~~~~e~~e~~~I~~iv~k~s~~l~~PI~~~~~~~~~~~~~~ 252 (256)
T 3o0i_A 190 FTVRTDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSD 252 (256)
T ss_dssp EEEEECC-SSCCSSEEEEEEEECGGGGGGGCHHHHHHHHHHHCTTCSSCEEECCC---------
T ss_pred EEEeeCC-CCCCCCCcEEEEEEcCcchhhccHHHHHHHHHHHHhhCCCCeEEeeeeeecccCCC
Confidence 9998864 34568999999999999999999999999999999999999999988877666553
No 18
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=100.00 E-value=2.2e-51 Score=418.46 Aligned_cols=216 Identities=53% Similarity=0.875 Sum_probs=192.5
Q ss_pred hhccccchHhhHHHHHHHHHhcCCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeC
Q psy13233 60 KKAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDS 139 (704)
Q Consensus 60 ~~~e~~~Fqaev~~Ll~LL~~sLYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DN 139 (704)
+..|++.||+|+++||++|+++||+++++|||||||||+||++++||.++++|+.+...+++.|+|.+|.+..+|+|.||
T Consensus 7 ~~~~~~~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~Dn 86 (228)
T 3t0h_A 7 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDT 86 (228)
T ss_dssp -CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEEC
T ss_pred ccccceEEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeC
Confidence 55689999999999999999999999999999999999999999999999999888778889999999988999999999
Q ss_pred CCCCCHHHHHHhhchhhccChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecC-Cc
Q psy13233 140 GIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDA-SS 218 (704)
Q Consensus 140 GiGMT~~eL~~~LgtIa~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~g-g~ 218 (704)
|+||+++||..+|++||.||++.|.+.++.+ .+ ...||+||+||||+||||++|+|+||++++.++.|++++ +.
T Consensus 87 G~GMs~edl~~~l~~ia~S~~~~f~~~l~~~----~~-~~~iG~fG~G~~S~~~vad~v~V~Sr~~~~~~~~w~~~g~~~ 161 (228)
T 3t0h_A 87 GIGMTKADLINNLGTIAKSGTKAFMEALQAG----AD-ISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGS 161 (228)
T ss_dssp SCCCCHHHHHTGGGSCHHHHHHHHHHHHHTT----CC-GGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTE
T ss_pred CCCCCHHHHHHHHHhhccccchhhhhhhccc----CC-cccCCCCChhHHHHhccCCEEEEEEecCCCCcEEEEEcCCce
Confidence 9999999999999999999999998777543 23 679999999999999999999999999877899999998 78
Q ss_pred eEEEeCCCCCCCCCccEEEEEeccchhccCCHHHHHHHHHHhcccCCcceEEeccccccccCC
Q psy13233 219 FSIVNDPRGDNLKRGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEP 281 (704)
Q Consensus 219 f~I~~~~~~~~~~~GT~I~L~Lked~~e~l~~~~lk~likkys~fi~~PI~l~~~~~~~~~~~ 281 (704)
|++.+.+ +...++||+|+|+||++..+|++.++|+++|++||+||++||+++.+++++++++
T Consensus 162 ~~v~~~~-~~~~~~GT~I~v~Lk~~~~E~~e~~~i~~iv~~~a~~l~~Pi~~~~~~~~~~~~~ 223 (228)
T 3t0h_A 162 FTVRTDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVS 223 (228)
T ss_dssp EEEEECC-SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHSTTCSSCEEECCC--------
T ss_pred EEEeecC-CCCCCCCcEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCeEEeecceeeccCC
Confidence 9998864 2456899999999999999999999999999999999999999998877666554
No 19
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=100.00 E-value=1e-50 Score=415.46 Aligned_cols=214 Identities=68% Similarity=1.104 Sum_probs=180.0
Q ss_pred hhhccccchHhhHHHHHHHHHhcCCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEe
Q psy13233 59 RKKAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIID 138 (704)
Q Consensus 59 ~~~~e~~~Fqaev~~Ll~LL~~sLYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~D 138 (704)
.+..+++.||+++++|+++|+++||+++++|||||||||+||++++||.++++|+++...+++.|+|.++.++.+|+|.|
T Consensus 6 ~~~~~~~~F~~ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~i~I~D 85 (236)
T 2gqp_A 6 REKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTD 85 (236)
T ss_dssp HHTTTEECCCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEE
T ss_pred cccccccchhHhHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCCCEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999998877888999999998889999999
Q ss_pred CCCCCCHHHHHHhhchhhccChhhHHHhhhhhhcc-cccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCC
Q psy13233 139 SGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENI-KHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDAS 217 (704)
Q Consensus 139 NGiGMT~~eL~~~LgtIa~Sgt~~f~~~l~~~~~~-~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg 217 (704)
||+||+++||.++|++||.||++.|+++++.+... ..+ ...||+|||||||+||||++|+|.||+.++.++.|++++|
T Consensus 86 nG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d-~~~iG~fGiG~~S~f~va~~v~V~Sr~~~~~~~~w~~~gg 164 (236)
T 2gqp_A 86 TGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQST-SELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSN 164 (236)
T ss_dssp CSCCCCHHHHHHHHHCC---------------------C-HHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEESSS
T ss_pred CCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccc-hhhcCCCCcchhhHhhcCCEEEEEEeCCCCceEEEEEeCC
Confidence 99999999999999999999999998887643100 023 6799999999999999999999999998777899999888
Q ss_pred ceEEEeCCCCCCCCCccEEEEEeccchhccCCHHHHHHHHHHhcccCCcceEEecc
Q psy13233 218 SFSIVNDPRGDNLKRGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSS 273 (704)
Q Consensus 218 ~f~I~~~~~~~~~~~GT~I~L~Lked~~e~l~~~~lk~likkys~fi~~PI~l~~~ 273 (704)
.|++.+.+.+....+||+|+|+|+++..+|++.++|+++|++||+|++|||+++++
T Consensus 165 ~~~i~~~~~~~~~~~GT~I~l~Lk~~~~~~le~~~i~~lv~~~s~~i~~pI~~~~~ 220 (236)
T 2gqp_A 165 EFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSS 220 (236)
T ss_dssp CEEEEECTTCSCSSSEEEEEEEECGGGGGGGCHHHHHHHHHHHHTTCSSCEEEEEE
T ss_pred EEEEEeccCCCCCCCCeEEEEEECCcchhhChHHHHHHHHHHHhhhCCCceEEeee
Confidence 89998764333568999999999999999999999999999999999999999754
No 20
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=100.00 E-value=4.2e-47 Score=394.53 Aligned_cols=212 Identities=54% Similarity=0.887 Sum_probs=191.4
Q ss_pred hccccchHhhHHHHHHHHHhcCCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCC
Q psy13233 61 KAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSG 140 (704)
Q Consensus 61 ~~e~~~Fqaev~~Ll~LL~~sLYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNG 140 (704)
..+++.||+|+++|+++|+++||+++.+|||||||||+||++++||+++++++++.....+.|+|..+....+|+|.|||
T Consensus 44 ~~e~~~F~~ei~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG 123 (264)
T 1yc1_A 44 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTG 123 (264)
T ss_dssp CEEEEECCHHHHHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECS
T ss_pred cceeEEehHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECC
Confidence 45899999999999999999999999999999999999999999999999998877778899999988888999999999
Q ss_pred CCCCHHHHHHhhchhhccChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecC-Cce
Q psy13233 141 IGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDA-SSF 219 (704)
Q Consensus 141 iGMT~~eL~~~LgtIa~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~g-g~f 219 (704)
+||+++||.++|++||.||++.|+++++.. .+ ...||+|||||||+|++|++|+|.|++.++.++.|++++ +.|
T Consensus 124 ~GMs~edL~~~l~~ia~S~~~~f~~~l~~~----~d-~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~w~~~~~~~~ 198 (264)
T 1yc1_A 124 IGMTKADLINNLGTIAKSGTKAFMEALQAG----AD-ISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSF 198 (264)
T ss_dssp CCCCHHHHHHHHHSCTTSCHHHHHHHHHTT----CC-GGGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTTEE
T ss_pred cCCCHHHHHHHHHhhccccchhhhhhhccc----cc-hhhcCCCCCCccccccCCCEEEEEEecCCCceEEEEEcCCceE
Confidence 999999999999999999999998887643 23 679999999999999999999999999877789999988 889
Q ss_pred EEEeCCCCCCCCCccEEEEEeccchhccCCHHHHHHHHHHhcccCCcceEEeccccccc
Q psy13233 220 SIVNDPRGDNLKRGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQV 278 (704)
Q Consensus 220 ~I~~~~~~~~~~~GT~I~L~Lked~~e~l~~~~lk~likkys~fi~~PI~l~~~~~~~~ 278 (704)
++.+.+ .....+||+|+|+|+++..+|++.++|+++|++||+|+++||+++.+++..+
T Consensus 199 ~i~~~~-~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~lv~k~s~fi~~PI~~~~~~~~~~ 256 (264)
T 1yc1_A 199 TVRTDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDK 256 (264)
T ss_dssp EEEECC-SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCSSCEEECCCC----
T ss_pred EEeecC-CCCCCCCeEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCEEEeecccccc
Confidence 998753 2346899999999999999999999999999999999999999998755433
No 21
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=100.00 E-value=6.6e-47 Score=382.84 Aligned_cols=210 Identities=53% Similarity=0.881 Sum_probs=191.5
Q ss_pred ccccchHhhHHHHHHHHHhcCCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCC
Q psy13233 62 AESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGI 141 (704)
Q Consensus 62 ~e~~~Fqaev~~Ll~LL~~sLYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGi 141 (704)
.|++.||+++++|+++|+++||+++.+|||||||||+||++++|+.++++|+.++..+++.|+|..+.+..+|+|.|||+
T Consensus 3 ~~~~~f~~~~~~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~DnG~ 82 (220)
T 2wer_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGI 82 (220)
T ss_dssp CEEEECCHHHHHHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSC
T ss_pred CcceeeeecHHHHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEEcCC
Confidence 47899999999999999999999999999999999999999999999999988777788899999888788999999999
Q ss_pred CCCHHHHHHhhchhhccChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecC-CceE
Q psy13233 142 GMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDA-SSFS 220 (704)
Q Consensus 142 GMT~~eL~~~LgtIa~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~g-g~f~ 220 (704)
||++++|.++|++||.||++.|+++++.. .+ ...||+|||||||+|++|++|+|.|++.++.++.|.+++ +.|+
T Consensus 83 GMs~edl~~~l~~ia~S~~~~f~~k~~~~----~~-~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~~~~~~~~~~~~~~~ 157 (220)
T 2wer_A 83 GMTKAELINNLGTIAKSGTKAFMEALSAG----AD-VSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFT 157 (220)
T ss_dssp CCCHHHHHHHTTTSCCTTHHHHHHHHTTT----CC-GGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSSEEE
T ss_pred CCCHHHHHHHHHhHhcccchhHHHHhhcc----CC-cccCCccchhHHHhhhcCCeeEEEEecCCCceeEEEeCCCCceE
Confidence 99999999999999999999998888653 23 679999999999999999999999999877799999988 8899
Q ss_pred EEeCCCCCCCCCccEEEEEeccchhccCCHHHHHHHHHHhcccCCcceEEeccccc
Q psy13233 221 IVNDPRGDNLKRGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTI 276 (704)
Q Consensus 221 I~~~~~~~~~~~GT~I~L~Lked~~e~l~~~~lk~likkys~fi~~PI~l~~~~~~ 276 (704)
+.+.+......+||+|+|+|+++..+|++.+++++++++||.|+++||+++.+++.
T Consensus 158 i~~~~~~~~~~~GT~I~l~Lk~~~~~~~e~~~i~~~v~~~a~~l~~PI~~~~~~~~ 213 (220)
T 2wer_A 158 VTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEV 213 (220)
T ss_dssp EEECSSSCCCSSEEEEEEEECTTCGGGGCHHHHHHHHHHHCTTCCSCEEECCCCCC
T ss_pred eecccCCCCCCCCeEEEEEECcchHHhCCHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 88763223568999999999999999999999999999999999999999876543
No 22
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=100.00 E-value=6e-42 Score=350.23 Aligned_cols=206 Identities=44% Similarity=0.774 Sum_probs=184.3
Q ss_pred hccccchHhhHHHHHHHHHhcCCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCC
Q psy13233 61 KAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSG 140 (704)
Q Consensus 61 ~~e~~~Fqaev~~Ll~LL~~sLYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNG 140 (704)
..|++.||+++.+|+++|+++||+++.+|||||||||+||++++|+..++++++......+.|+|.++..+..|+|.|||
T Consensus 23 ~~e~~~f~~~i~~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~~i~I~DnG 102 (235)
T 2ior_A 23 GQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNG 102 (235)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEEEEEECS
T ss_pred ccccEEeehhHHHHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCceEEEEEECC
Confidence 34789999999999999999999999999999999999999999999999998877677788999998888899999999
Q ss_pred CCCCHHHHHHhhchhhccChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCC---CCcEEEEecC-
Q psy13233 141 IGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNE---DSQYIWESDA- 216 (704)
Q Consensus 141 iGMT~~eL~~~LgtIa~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~---d~~~~Wes~g- 216 (704)
+||+++||..+|++||.||++.|+++++... ..+ ...+|+||+||||+|++|++|+|.|++.+ ..++.|.+++
T Consensus 103 ~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~--~~~-~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~ 179 (235)
T 2ior_A 103 VGMTRDEVIDHLGTIAKSGTKSFLESLGSDQ--AKD-SQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGE 179 (235)
T ss_dssp SCCCHHHHHHHHTTCCCTTHHHHHHHCCSCH--HHH-HHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSS
T ss_pred CCCCHHHHHHHHHHHccccccchhhhhcccc--ccc-cccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCC
Confidence 9999999999999999999999987764210 012 57899999999999999999999999975 3589999988
Q ss_pred CceEEEeCCCCCCCCCccEEEEEeccchhccCCHHHHHHHHHHhcccCCcceEEec
Q psy13233 217 SSFSIVNDPRGDNLKRGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWS 272 (704)
Q Consensus 217 g~f~I~~~~~~~~~~~GT~I~L~Lked~~e~l~~~~lk~likkys~fi~~PI~l~~ 272 (704)
+.|++.+. ....+||+|+|+|+++..+|++.++++++|++||+|+++||+++.
T Consensus 180 ~~~~i~~~---~~~~~GT~V~v~Lk~~~~~~~e~~~i~~lv~~ya~~l~~PI~~~~ 232 (235)
T 2ior_A 180 GEYTVADI---TKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEK 232 (235)
T ss_dssp SEEEEEEE---CCCSCEEEEEEEECTTCGGGGCHHHHHHHHHHHTTSCCSCEEEC-
T ss_pred CcEEEeeC---CCCCCCEEEEEEEcCchhhhCCHHHHHHHHHHHhccCCCCeEecc
Confidence 88888864 235799999999999999999999999999999999999999974
No 23
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8
Probab=99.97 E-value=3.1e-33 Score=291.50 Aligned_cols=142 Identities=54% Similarity=0.906 Sum_probs=128.5
Q ss_pred ccceeEEEEEEccchhhhHHHHHhhhcccccCCCccccccHHHHhhChHHHHHHHHHHHHHHHHhhccC--hHHHHHHHH
Q psy13233 562 GLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIRKALDMFKKLD--PETYKKFWA 639 (704)
Q Consensus 562 ~~~~~V~~V~IS~rl~d~~P~~l~~~q~v~d~~~~~~~~~r~ile~h~iI~~l~~~i~~~~~d~~~~l~--~e~~~~~~~ 639 (704)
++.+||++|+|++.+.+++|.||+|++||+|++++|+|+||++||++++++.|++.++++++++|++++ ++.|.+||.
T Consensus 68 ~ikLYvrrVfI~d~~~~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la~d~e~Y~kf~~ 147 (288)
T 1hk7_A 68 NIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQFEKFYS 147 (288)
T ss_dssp CCEEEETTEEEESSCSSSSCGGGTTCEEEEEESSCCCC-------CCHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred CeEEEEeeeEeecchhhhchHHHHHHhhcccccccCCcccHHHhccCHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 445899999999999999999999999999999999999999999999999999999999999999985 489999999
Q ss_pred HhhhhhccccCCChhhHHHHhhhhcccccCCC-CCcCHHHHHhhcCCCCCeEEEEEcCChhhhcc
Q psy13233 640 EYSTNMKLGVIEDPANRSRLAKLLMFQSSSST-EPTSLSDYVKRMKPKQDHIYYIAGASRKESYK 703 (704)
Q Consensus 640 ~~~~~~k~g~~~d~~~~~~~~~llrf~s~~~~-~~~sl~~y~~~m~~~q~~iyy~~~~~~~~~~~ 703 (704)
.||.+||+|+++|.+||++|++||||+||+++ ++|||++||+||+++|++||||+|+|+++..|
T Consensus 148 ~fg~~lK~Gi~eD~~nr~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~ 212 (288)
T 1hk7_A 148 AFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEK 212 (288)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHTTCCBEESSCSSSCBCHHHHHHHSCTTCCEEEEEECSSHHHHHT
T ss_pred HHhHHHhhhhcccHHHHHHHHHHhccccccCCCCcccHHHHHhhCcCCCceEEEEeCCCHHHHhc
Confidence 99999999999999999999999999999886 79999999999999999999999999987654
No 24
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A
Probab=99.97 E-value=4.4e-33 Score=287.15 Aligned_cols=143 Identities=54% Similarity=0.901 Sum_probs=129.7
Q ss_pred cccceeEEEEEEccchhhhHHHHHhhhcccccCCCccccccHHHHhhChHHHHHHHHHHHHHHHHhhccC--hHHHHHHH
Q psy13233 561 RGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIRKALDMFKKLD--PETYKKFW 638 (704)
Q Consensus 561 ~~~~~~V~~V~IS~rl~d~~P~~l~~~q~v~d~~~~~~~~~r~ile~h~iI~~l~~~i~~~~~d~~~~l~--~e~~~~~~ 638 (704)
+++.+||++|+|++.+.+++|.||+|++||+|++++|+|+||++||++++++.|++.++++++++|++++ ++.|.+||
T Consensus 69 ~~ikLYvrrVfI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l~kkvl~~l~~la~d~e~y~~f~ 148 (260)
T 1usu_A 69 NNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQFEKFY 148 (260)
T ss_dssp CCEEEEETTEEEESCCTTSSCGGGTTCEEEEEESSCCSCC------CCHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCeEEEEeeeEeccchhhhchHHHHHheeccccCCcCCccCHHHhcccHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 3455899999999999999999999999999999999999999999999999999999999999999974 59999999
Q ss_pred HHhhhhhccccCCChhhHHHHhhhhcccccCCC-CCcCHHHHHhhcCCCCCeEEEEEcCChhhhcc
Q psy13233 639 AEYSTNMKLGVIEDPANRSRLAKLLMFQSSSST-EPTSLSDYVKRMKPKQDHIYYIAGASRKESYK 703 (704)
Q Consensus 639 ~~~~~~~k~g~~~d~~~~~~~~~llrf~s~~~~-~~~sl~~y~~~m~~~q~~iyy~~~~~~~~~~~ 703 (704)
..||.+||+|+++|.+|+++|++||||+||+++ +++||++||+|||++|+.||||+|+|+++..|
T Consensus 149 ~~fg~~lK~G~~eD~~n~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~ 214 (260)
T 1usu_A 149 SAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKSVEK 214 (260)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHTTCEEEETTEEEEEEEHHHHHHTSCTTCCEEEEEECSSHHHHHT
T ss_pred HHHhhhhcchhccCHHHHHHHHHhhEeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhc
Confidence 999999999999999999999999999999875 79999999999999999999999999987644
No 25
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=99.97 E-value=7.9e-33 Score=286.12 Aligned_cols=143 Identities=54% Similarity=0.928 Sum_probs=136.2
Q ss_pred cccceeEEEEEEccchhhhHHHHHhhhcccccCCCccccccHHHHhhChHHHHHHHHHHHHHHHHhhccC--hHHHHHHH
Q psy13233 561 RGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIRKALDMFKKLD--PETYKKFW 638 (704)
Q Consensus 561 ~~~~~~V~~V~IS~rl~d~~P~~l~~~q~v~d~~~~~~~~~r~ile~h~iI~~l~~~i~~~~~d~~~~l~--~e~~~~~~ 638 (704)
+++.+||++|+|++.+.+++|.||+|++||+|++++|+|+||++||++++++.|++.+++|++++|++++ ++.|.+||
T Consensus 69 ~~ikLYv~rVfI~d~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la~d~e~Y~~f~ 148 (268)
T 3pry_A 69 NNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELAEDKENYKKFY 148 (268)
T ss_dssp CCEEEEETTEEEESCCGGGSCGGGTTCEEEEEESSSCSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred CCeeEEEEEEEeecchhhhccchhhheEEEecCCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 4556899999999999999999999999999999999999999999999999999999999999999974 68999999
Q ss_pred HHhhhhhccccCCChhhHHHHhhhhcccccCCC-CCcCHHHHHhhcCCCCCeEEEEEcCChhhhcc
Q psy13233 639 AEYSTNMKLGVIEDPANRSRLAKLLMFQSSSST-EPTSLSDYVKRMKPKQDHIYYIAGASRKESYK 703 (704)
Q Consensus 639 ~~~~~~~k~g~~~d~~~~~~~~~llrf~s~~~~-~~~sl~~y~~~m~~~q~~iyy~~~~~~~~~~~ 703 (704)
..||.+||+|+++|.+||++|++||||+||.++ +++||++||+|||++|+.|||++|+|+++..|
T Consensus 149 ~~fg~~lK~G~~eD~~~~~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Q~~IyYitg~s~~~~~~ 214 (268)
T 3pry_A 149 EAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVAN 214 (268)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHTCEEEETTTTTSCEEHHHHHHTSCTTCCEEEEECSCCHHHHHT
T ss_pred HHHHHHHHhHhhCCHHHHHHHHHHheeeeccCCCccEeHHHHHHhcccCCceEEEEeCCCHHHHHh
Confidence 999999999999999999999999999999887 79999999999999999999999999987644
No 26
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=99.97 E-value=3.1e-32 Score=285.79 Aligned_cols=143 Identities=45% Similarity=0.781 Sum_probs=135.4
Q ss_pred cccceeEEEEEEccchhhhHHHHHhhhcccccCCCccccccHHHHhhChHHHHHHHHHHHHHHHHhhccC---hHHHHHH
Q psy13233 561 RGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIRKALDMFKKLD---PETYKKF 637 (704)
Q Consensus 561 ~~~~~~V~~V~IS~rl~d~~P~~l~~~q~v~d~~~~~~~~~r~ile~h~iI~~l~~~i~~~~~d~~~~l~---~e~~~~~ 637 (704)
+++.+||++|+|++.+.+++|.||+|++||+|++++|+|+||++||++++++.|++.++++++++|++++ ++.|.+|
T Consensus 67 ~~ikLYvrrVfI~D~~eeLlP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~Irk~l~kKvl~~L~~la~~d~e~Y~kF 146 (303)
T 2gq0_A 67 HGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAKDDAEKYQTF 146 (303)
T ss_dssp CSEEEEETTEEEEEEEGGGSCGGGTTCEEEEEESSSCTTCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CCeEEEEeceEeecchhhhchHHHHHhhcccccccCCcccchHhhcccHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3455899999999999999999999999999999999999999999999999999999999999999985 5899999
Q ss_pred HHHhhhhhccccCCChhhHHHHhhhhcccccCCC---CCcCHHHHHhhcCCCCCeEEEEEcCChhhhcc
Q psy13233 638 WAEYSTNMKLGVIEDPANRSRLAKLLMFQSSSST---EPTSLSDYVKRMKPKQDHIYYIAGASRKESYK 703 (704)
Q Consensus 638 ~~~~~~~~k~g~~~d~~~~~~~~~llrf~s~~~~---~~~sl~~y~~~m~~~q~~iyy~~~~~~~~~~~ 703 (704)
|..||.+||+|+++|.+|+++|++||||+||.++ +++||++||+|||++|+.||||+|+|+++..|
T Consensus 147 ~~~fg~~lK~Gi~eD~~nr~~l~~LLrF~Ss~~~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~ 215 (303)
T 2gq0_A 147 WQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKS 215 (303)
T ss_dssp HHHHHHHHTTHHHHCGGGHHHHHTTCCBEETTTTCCCCCBCHHHHHHTCCTTCCSEEEEECSSHHHHHT
T ss_pred HHHHHHHHhhhhhcCHHHHHHHHHhheeeecCCCccCCeeeHHHHHHhcccCCceEEEEeCCCHHHHhc
Confidence 9999999999999999999999999999999875 79999999999999999999999999986543
No 27
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=99.97 E-value=2.8e-32 Score=282.30 Aligned_cols=142 Identities=43% Similarity=0.821 Sum_probs=123.3
Q ss_pred cccceeEEEEEEccchhhhHHHHHhhhcccccCCCccccccHHHHhhChHHHHHHHHHHHHHHHHhhccC---hHHHHHH
Q psy13233 561 RGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIRKALDMFKKLD---PETYKKF 637 (704)
Q Consensus 561 ~~~~~~V~~V~IS~rl~d~~P~~l~~~q~v~d~~~~~~~~~r~ile~h~iI~~l~~~i~~~~~d~~~~l~---~e~~~~~ 637 (704)
+++.+||++|+|++.+.+++|.||+|++||+|++++|+|+||++||++++++.|++.++++++++|++++ ++.|.+|
T Consensus 71 ~~ikLYvrrVfI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~kkvl~~l~~la~~d~e~y~kf 150 (263)
T 1y6z_A 71 RGIRLYVKRVFINDKFSESIPRWLTFLRGIVDSENLPLNVGREILQKSKMLSIINKRIVLKSISMMKGLKETGGDKWTKF 150 (263)
T ss_dssp CCEEEEETTEEEESCGGGGSCGGGTTCEEEEEECC------------CTTHHHHHHHHHHHHHHHHHHHHHHCSHHHHHH
T ss_pred cCeeEEEeeeEeecchhhhchHHHHHHeeccccccCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4556899999999999999999999999999999999999999999999999999999999999999975 5899999
Q ss_pred HHHhhhhhccccCCChhhHHHHhhhhcccccCCC-CCcCHHHHHhhcCCCCCeEEEEEcCChhhhc
Q psy13233 638 WAEYSTNMKLGVIEDPANRSRLAKLLMFQSSSST-EPTSLSDYVKRMKPKQDHIYYIAGASRKESY 702 (704)
Q Consensus 638 ~~~~~~~~k~g~~~d~~~~~~~~~llrf~s~~~~-~~~sl~~y~~~m~~~q~~iyy~~~~~~~~~~ 702 (704)
|..||.+||+|+++|.+|+++|++||||+||.++ +++||++||+|||++|+.|||++|+|+++..
T Consensus 151 ~~~fg~~lK~G~~eD~~~~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~ 216 (263)
T 1y6z_A 151 LNTFGKYLKIGVVEDKENQEEIASLVEFYSINSGDKKTDLDSYIENMKEDQKCIYYISGENKKTAQ 216 (263)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHTTCEECBTTTTTSCEEHHHHHHTCCTTCCSEEEEECSSHHHHH
T ss_pred HHHHhHHHccccccCHHHHHHHHHhheeeeccCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHh
Confidence 9999999999999999999999999999999877 7999999999999999999999999987543
No 28
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major}
Probab=99.97 E-value=4.5e-31 Score=290.22 Aligned_cols=142 Identities=53% Similarity=0.903 Sum_probs=130.0
Q ss_pred cccceeEEEEEEccchhhhHHHHHhhhcccccCCCccccccHHHHhhChHHHHHHHHHHHHHHHHhhccC--hHHHHHHH
Q psy13233 561 RGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIRKALDMFKKLD--PETYKKFW 638 (704)
Q Consensus 561 ~~~~~~V~~V~IS~rl~d~~P~~l~~~q~v~d~~~~~~~~~r~ile~h~iI~~l~~~i~~~~~d~~~~l~--~e~~~~~~ 638 (704)
+++.+||++|+|++.+.+++|.||+|++||+|+.++|+|+||++||++++++.|++.+++|++++|++++ ++.|.+||
T Consensus 85 ~~ikLYv~rVfI~D~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kKvl~~L~~la~d~e~Y~kFw 164 (444)
T 3hjc_A 85 NNIKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFDEVAENKEDYKQFY 164 (444)
T ss_dssp CSEEEEETTEEEESCCGGGSCGGGTTCEEEEEESSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred CCeeEEEeeeEeecchhhhchHHHhhheEEeccCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 3455899999999999999999999999999999999999999999999999999999999999999985 59999999
Q ss_pred HHhhhhhccccCCChhhHHHHhhhhcccccCCC-CCcCHHHHHhhcCCCCCeEEEEEcCChhhhc
Q psy13233 639 AEYSTNMKLGVIEDPANRSRLAKLLMFQSSSST-EPTSLSDYVKRMKPKQDHIYYIAGASRKESY 702 (704)
Q Consensus 639 ~~~~~~~k~g~~~d~~~~~~~~~llrf~s~~~~-~~~sl~~y~~~m~~~q~~iyy~~~~~~~~~~ 702 (704)
..||.+||+|+++|.+||.+|++||||+||.++ ++|||++||+|||++|+.|||++|+|+++..
T Consensus 165 ~~fg~~lK~G~~eD~~~~~~l~~lLrF~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~ 229 (444)
T 3hjc_A 165 EQFGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDSKKKLE 229 (444)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHCCBCBTTTTTSCBCHHHHHHTCCTTCCEEEEEECSCHHHHH
T ss_pred HHHhHHHhccccccHHHHHHHHHheEeeeecCCCCcCcHHHHHHhccccCceEEEEeCCCHHHHH
Confidence 999999999999999999999999999999875 8999999999999999999999999987653
No 29
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Probab=99.96 E-value=4.2e-31 Score=289.65 Aligned_cols=143 Identities=53% Similarity=0.935 Sum_probs=127.1
Q ss_pred cccceeEEEEEEccchhhhHHHHHhhhcccccCCCccccccHHHHhhChHHHHHHHHHHHHHHHHhhcc--ChHHHHHHH
Q psy13233 561 RGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIRKALDMFKKL--DPETYKKFW 638 (704)
Q Consensus 561 ~~~~~~V~~V~IS~rl~d~~P~~l~~~q~v~d~~~~~~~~~r~ile~h~iI~~l~~~i~~~~~d~~~~l--~~e~~~~~~ 638 (704)
+++.+||++|+|++.+.+++|.||+|++||+|+.++|+|+||++||++++++.|++.+++|++++|+++ +++.|.+||
T Consensus 69 ~~ikLYvrrVfI~d~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~Irk~i~kKvl~~L~~la~d~e~Y~~f~ 148 (448)
T 3q6m_A 69 NNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNLVKKCLELFTELAEDKENYKKFY 148 (448)
T ss_dssp CCEEEEETTEEEESCCTTSSCGGGTTCEEEEEESCCC---------CCSHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHH
T ss_pred cceeEEeeeeEEecchhhhchhhhhheeEEeccCCCCccccHHhhccCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 455689999999999999999999999999999999999999999999999999999999999999998 468999999
Q ss_pred HHhhhhhccccCCChhhHHHHhhhhcccccCCC-CCcCHHHHHhhcCCCCCeEEEEEcCChhhhcc
Q psy13233 639 AEYSTNMKLGVIEDPANRSRLAKLLMFQSSSST-EPTSLSDYVKRMKPKQDHIYYIAGASRKESYK 703 (704)
Q Consensus 639 ~~~~~~~k~g~~~d~~~~~~~~~llrf~s~~~~-~~~sl~~y~~~m~~~q~~iyy~~~~~~~~~~~ 703 (704)
..||.+||+|+++|.+||.+|++||||+||.++ ++|||++||+|||++|+.|||++|+|+++..|
T Consensus 149 ~~fg~~lK~Gi~eD~~n~~~l~~LLrF~Ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~ 214 (448)
T 3q6m_A 149 EQFSKNIKLGIHEDSQNRKKLSELLRYYTSASGDEMVSLKDYCTRMKENQKHIYYITGETKDQVAN 214 (448)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHTTCEEEETTTTTSCEEHHHHHHTCCSSCCEEEEEECSCHHHHHT
T ss_pred HHHhHHHHhhhcccHHHHHHHHHhhEeeeccCCCceEeHHHHHHhccccCceEEEEecCCHHHHHh
Confidence 999999999999999999999999999999887 79999999999999999999999999986543
No 30
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.5e-31 Score=287.82 Aligned_cols=142 Identities=54% Similarity=0.906 Sum_probs=135.1
Q ss_pred ccceeEEEEEEccchhhhHHHHHhhhcccccCCCccccccHHHHhhChHHHHHHHHHHHHHHHHhhccC--hHHHHHHHH
Q psy13233 562 GLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIRKALDMFKKLD--PETYKKFWA 639 (704)
Q Consensus 562 ~~~~~V~~V~IS~rl~d~~P~~l~~~q~v~d~~~~~~~~~r~ile~h~iI~~l~~~i~~~~~d~~~~l~--~e~~~~~~~ 639 (704)
++.+||++|+|++.+.+.+|.||+|++||+|++++|+|+||++||++++++.|++.+++|++++|++++ ++.|.+||.
T Consensus 68 ~ikLYvrrVfI~d~~~~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~~~l~kkvl~~L~~la~~~e~y~kf~~ 147 (405)
T 2cge_A 68 NIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQFEKFYS 147 (405)
T ss_dssp CCEEEETTEEEESSCSSSSCGGGTTCEEEEEESSCCSSCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred CeEEEEeeeEecCchhhhChHHHHHHhhcccccccCcccChhhhcccHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 445899999999999999999999999999999999999999999999999999999999999999986 499999999
Q ss_pred HhhhhhccccCCChhhHHHHhhhhcccccCCC-CCcCHHHHHhhcCCCCCeEEEEEcCChhhhcc
Q psy13233 640 EYSTNMKLGVIEDPANRSRLAKLLMFQSSSST-EPTSLSDYVKRMKPKQDHIYYIAGASRKESYK 703 (704)
Q Consensus 640 ~~~~~~k~g~~~d~~~~~~~~~llrf~s~~~~-~~~sl~~y~~~m~~~q~~iyy~~~~~~~~~~~ 703 (704)
.||.+||+|+++|..||++|++||||+||+++ +++||++||+|||++|+.|||++|+|+++..+
T Consensus 148 ~fg~~lK~G~~eD~~~~~~l~~lLrF~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~ 212 (405)
T 2cge_A 148 AFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEK 212 (405)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHTTCEECBSSCSSSCEEHHHHHHTCCTTCCSEEEEECSCHHHHHT
T ss_pred HhhhhhcchhccCHHHHHHHHHhheeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhc
Confidence 99999999999999999999999999999876 79999999999999999999999999886543
No 31
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.7e-30 Score=292.97 Aligned_cols=143 Identities=54% Similarity=0.900 Sum_probs=136.0
Q ss_pred cccceeEEEEEEccchhhhHHHHHhhhcccccCCCccccccHHHHhhChHHHHHHHHHHHHHHHHhhccC--hHHHHHHH
Q psy13233 561 RGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIRKALDMFKKLD--PETYKKFW 638 (704)
Q Consensus 561 ~~~~~~V~~V~IS~rl~d~~P~~l~~~q~v~d~~~~~~~~~r~ile~h~iI~~l~~~i~~~~~d~~~~l~--~e~~~~~~ 638 (704)
+++.+||++|+|++.+.+++|.||+|++||+|+.++|+|+||++||++++++.|++.+++|++++|.+++ ++.|.+||
T Consensus 339 ~~ikLYv~rVfI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l~kkvl~~l~~la~~~e~y~~f~ 418 (677)
T 2cg9_A 339 NNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQFEKFY 418 (677)
T ss_dssp CCSEEEETTEEEEECSTTTSCGGGTTCEEEEEESSCCCCBTTTBCCCHHHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHH
T ss_pred CCeEEEEeeeEeecChhhhchHHHHHheeecccCCCCcccCHHHhccCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 4556899999999999999999999999999999999999999999999999999999999999999975 49999999
Q ss_pred HHhhhhhccccCCChhhHHHHhhhhcccccCCC-CCcCHHHHHhhcCCCCCeEEEEEcCChhhhcc
Q psy13233 639 AEYSTNMKLGVIEDPANRSRLAKLLMFQSSSST-EPTSLSDYVKRMKPKQDHIYYIAGASRKESYK 703 (704)
Q Consensus 639 ~~~~~~~k~g~~~d~~~~~~~~~llrf~s~~~~-~~~sl~~y~~~m~~~q~~iyy~~~~~~~~~~~ 703 (704)
..||.+||+|+++|..||.+|++||||+||+++ +++||++||+|||++|+.||||+|+|+++..|
T Consensus 419 ~~fg~~lK~G~~eD~~nr~~l~~llrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~ 484 (677)
T 2cg9_A 419 SAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEK 484 (677)
T ss_dssp HHHHHHHHHHHHHCSSSHHHHHTTCCBEESSCTTSCBCSTTHHHHSCTTCCEEEEEECSCSTTTTT
T ss_pred HHHhHHhhhhhccCHHHHHHHHhheEeeecCCCCceeeHHHHHHhccccCceEEEEeCCCHHHHHh
Confidence 999999999999999999999999999999987 79999999999999999999999999876543
No 32
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.94 E-value=1e-27 Score=275.30 Aligned_cols=142 Identities=70% Similarity=1.083 Sum_probs=136.3
Q ss_pred ccceeEEEEEEccchhhhHHHHHhhhcccccCCCccccccHHHHhhChHHHHHHHHHHHHHHHHhhccChHHHH-HHHHH
Q psy13233 562 GLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIRKALDMFKKLDPETYK-KFWAE 640 (704)
Q Consensus 562 ~~~~~V~~V~IS~rl~d~~P~~l~~~q~v~d~~~~~~~~~r~ile~h~iI~~l~~~i~~~~~d~~~~l~~e~~~-~~~~~ 640 (704)
.+.+||++|.|++++.+.+|.|+.|++|++|+.++|+|++|++||++++++.|++.++++++++|.+++++.|. +||..
T Consensus 320 ~i~LYVn~vfI~d~~~~llP~~l~FvkGvVDs~dLplNVSRE~LQ~~~~l~~I~~~l~kkv~~~l~~l~~e~y~~~f~~~ 399 (666)
T 2o1u_A 320 YIKLYVRRVFITDDFHDMMPKYLNFVKGVVDSDDLPLNVSRETLQQHKLLKVIRKKLVRKTLDMIKKIADEKYNDTFWKE 399 (666)
T ss_dssp CEEEEETTEEEESCCCTTSCGGGTTCEEEEEESSSCSSSCHHHHHTCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTHHHH
T ss_pred CeEEEEcCeEeeCchhhhhHHHHHHeeeeeCHhhCCCcccchhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44589999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred hhhhhccccCCChhhHHHHhhhhcccccCCC-CCcCHHHHHhhcCCCCCeEEEEEcCChhhhcc
Q psy13233 641 YSTNMKLGVIEDPANRSRLAKLLMFQSSSST-EPTSLSDYVKRMKPKQDHIYYIAGASRKESYK 703 (704)
Q Consensus 641 ~~~~~k~g~~~d~~~~~~~~~llrf~s~~~~-~~~sl~~y~~~m~~~q~~iyy~~~~~~~~~~~ 703 (704)
||.+||+|+++|..||++|++||||+||+++ +++||++||+|||++|+.|||++|+|+++..|
T Consensus 400 f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~ 463 (666)
T 2o1u_A 400 FGTNIKLGVIEDHSNRTRLAKLLRFQSSHHPSDITSLDQYVERMKEKQDKIYFMAGSSRKEAES 463 (666)
T ss_dssp HHHHHHHHHHHCGGGHHHHHTTCCEEETTSSSCEECHHHHHHHSCTTCCEEEEEECSSHHHHHT
T ss_pred HHHHHhhhhccCHHHHHHHHhheEeeecCCCCceeeHHHHHHhcccccceEEEEeCCCHHHHhh
Confidence 9999999999999999999999999999876 79999999999999999999999999986543
No 33
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.93 E-value=2.7e-27 Score=267.80 Aligned_cols=142 Identities=45% Similarity=0.786 Sum_probs=134.2
Q ss_pred ccceeEEEEEEccchhhhHHHHHhhhcccccCCCccccccHHHHhhChHHHHHHHHHHHHHHHHhhccC---hHHHHHHH
Q psy13233 562 GLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIRKALDMFKKLD---PETYKKFW 638 (704)
Q Consensus 562 ~~~~~V~~V~IS~rl~d~~P~~l~~~q~v~d~~~~~~~~~r~ile~h~iI~~l~~~i~~~~~d~~~~l~---~e~~~~~~ 638 (704)
.+.+||++|.|++++.+.+|.|+.|++||+|+.++|+|++|++||++++++.|++.++++++++|.+++ ++.|.+||
T Consensus 296 ~i~lyvn~v~I~d~~~~llP~~l~fv~gvVDs~dlplNVSRE~lq~~~~l~~I~~~l~kkv~~~l~~l~~~d~e~y~~f~ 375 (559)
T 1y4s_A 296 GLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAKDDAEKYQTFW 375 (559)
T ss_dssp CEEEEETTEEEEEEEGGGSCGGGTTCEEEEEESSSCTTCCTTGGGGCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CeEEEEcCEEeecchhhhChHhHhheeEeeChhhCCCeeCchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 344899999999999999999999999999999999999999999999999999999999999999975 48999999
Q ss_pred HHhhhhhccccCCChhhHHHHhhhhcccccCCC---CCcCHHHHHhhcCCCCCeEEEEEcCChhhhcc
Q psy13233 639 AEYSTNMKLGVIEDPANRSRLAKLLMFQSSSST---EPTSLSDYVKRMKPKQDHIYYIAGASRKESYK 703 (704)
Q Consensus 639 ~~~~~~~k~g~~~d~~~~~~~~~llrf~s~~~~---~~~sl~~y~~~m~~~q~~iyy~~~~~~~~~~~ 703 (704)
..||.+||+|+++|..||.+|++||||+||+++ +++||++||+|||++|+.|||++|+|+++..|
T Consensus 376 ~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~~~sL~eY~~rmk~~q~~IyY~t~~~~~~~~~ 443 (559)
T 1y4s_A 376 QQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKS 443 (559)
T ss_dssp HHHHHHHTTSTTTCGGGHHHHHTTCEEBCSSCSSSSCCEETTSSSTTCCTTCSCCBEECCSSSHHHHT
T ss_pred HHHhHHhhhhhccCHHHHHHHHHhhEeeecCCCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHHhh
Confidence 999999999999999999999999999999865 69999999999999999999999999876543
No 34
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.93 E-value=5.1e-27 Score=268.45 Aligned_cols=141 Identities=45% Similarity=0.791 Sum_probs=133.6
Q ss_pred ccceeEEEEEEccchhhhHHHHHhhhcccccCCCccccccHHHHhhChHHHHHHHHHHHHHHHHhhccC---hHHHHHHH
Q psy13233 562 GLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIRKALDMFKKLD---PETYKKFW 638 (704)
Q Consensus 562 ~~~~~V~~V~IS~rl~d~~P~~l~~~q~v~d~~~~~~~~~r~ile~h~iI~~l~~~i~~~~~d~~~~l~---~e~~~~~~ 638 (704)
.+.+||++|.|++++.+.+|.|++|++||+|+.++|+|++|++||++++++.|++.++++++++|.+++ ++.|.+||
T Consensus 296 ~i~lyvn~v~I~d~~~~llP~~l~fv~gvVDs~dl~lNVSRE~LQ~~~~l~~I~~~l~kkv~~~l~~l~~~d~e~y~~f~ 375 (624)
T 2ioq_A 296 GLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAKDDAEKYQTFW 375 (624)
T ss_dssp CEEEEESSCEEEEEECSSSCTTSTTCEEEEEESSSCTTCCHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CeEEEECCEEeecchhccchhhhhhEEEEECHhhCCCccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 344899999999999999999999999999999999999999999999999999999999999999974 58999999
Q ss_pred HHhhhhhccccCCChhhHHHHhhhhcccccCCC---CCcCHHHHHhhcCCCCCeEEEEEcCChhhhc
Q psy13233 639 AEYSTNMKLGVIEDPANRSRLAKLLMFQSSSST---EPTSLSDYVKRMKPKQDHIYYIAGASRKESY 702 (704)
Q Consensus 639 ~~~~~~~k~g~~~d~~~~~~~~~llrf~s~~~~---~~~sl~~y~~~m~~~q~~iyy~~~~~~~~~~ 702 (704)
..||.+||+|+++|..||.+|++||||+||+++ +++||++||+|||++|+.|||++|+|+++..
T Consensus 376 ~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~~~~~~~~~sL~eY~~rmke~q~~IyY~t~~~~~~~~ 442 (624)
T 2ioq_A 376 QQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAK 442 (624)
T ss_dssp HHHHHHHTTHHHHCCTTHHHHHHHCCBEETTSSCSCCCBCHHHHHTTCCTTCCSEEEEECSSHHHHH
T ss_pred HHHhHHhhhhhccCHHHHHHHHHheEeeecCCCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHHh
Confidence 999999999999999999999999999999865 6999999999999999999999999987653
No 35
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.60 E-value=2.4e-15 Score=160.74 Aligned_cols=150 Identities=21% Similarity=0.312 Sum_probs=107.0
Q ss_pred CCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCC-cEEEEEeCCCCCCHHHHHHhhchhhccCh
Q psy13233 82 LYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQEN-KMLHIIDSGIGMTKADLVKNLGTIAKSGT 160 (704)
Q Consensus 82 LYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~-~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt 160 (704)
...++..+|+|||+||.||.+ . .|.|.++.++ ..|+|.|||+||+++++...+..++.|..
T Consensus 21 vi~~~~~~v~ELi~NaidA~a----------------~--~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~ 82 (333)
T 1b63_A 21 VVERPASVVKELVENSLDAGA----------------T--RIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSKI 82 (333)
T ss_dssp HCSSHHHHHHHHHHHHHHTTC----------------S--EEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTCCSSC
T ss_pred chhCHHHHHHHHHHHHHHCCC----------------C--eEEEEEEeCCceEEEEEEcCCCcCHHHHHHhhhcccccCc
Confidence 346889999999999999952 1 3555555443 68999999999999999999988887732
Q ss_pred hhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCC-CcEEEEecCC--ceEEEeCCCCCCCCCccEEE
Q psy13233 161 AEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNED-SQYIWESDAS--SFSIVNDPRGDNLKRGTQIS 237 (704)
Q Consensus 161 ~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d-~~~~Wes~gg--~f~I~~~~~~~~~~~GT~I~ 237 (704)
..+ +.+ .. ...+|++|+|++|+++++ +|+|+|++.++ .+|.|..+|+ ...+.+. ..++||+|+
T Consensus 83 ~~~-~d~-------~~-~~~~G~~G~gl~si~~vs-~l~v~s~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~GT~V~ 148 (333)
T 1b63_A 83 ASL-DDL-------EA-IISLGFRGEALASISSVS-RLTLTSRTAEQQEAWQAYAEGRDMNVTVKPA----AHPVGTTLE 148 (333)
T ss_dssp CSH-HHH-------HT-CCSSCCSSCHHHHHHTTS-EEEEEEECTTCSSEEEEEEETTTTEEEEEEE----CCCSEEEEE
T ss_pred ccc-chh-------hh-ccccCccccchhhhhcCC-cEEEEEecCCCceEEEEEEcCCcceEeeecc----cCCCCCEEE
Confidence 211 111 11 357899999999999999 89999999754 4677777774 3444432 247999999
Q ss_pred EE-ec---cchhccCC-----HHHHHHHHHHhccc
Q psy13233 238 LE-LK---EEASDFLE-----VNTLKDLIKKYSQF 263 (704)
Q Consensus 238 L~-Lk---ed~~e~l~-----~~~lk~likkys~f 263 (704)
+. |- +....|+. -.++.+++++|+-.
T Consensus 149 v~~Lf~n~P~r~kflk~~~~e~~~i~~~~~~~al~ 183 (333)
T 1b63_A 149 VLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALA 183 (333)
T ss_dssp EESTTTTCHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred EecccccchhhhhhhccHHHHHHHHHHHHHHHhcc
Confidence 98 10 11122322 26788999999864
No 36
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.52 E-value=1.1e-14 Score=157.51 Aligned_cols=164 Identities=17% Similarity=0.217 Sum_probs=101.1
Q ss_pred HHHHHHHHHhcCCCC-----ChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcC-CCcEEEEEeCCCCCC
Q psy13233 71 VNRMMKLIINSLYRN-----KEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQ-ENKMLHIIDSGIGMT 144 (704)
Q Consensus 71 v~~Ll~LL~~sLYs~-----~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~-~~~~L~I~DNGiGMT 144 (704)
+..|-+.+++.+++. +..+|+|||+||+||.. . .|.|.+.. ....|+|.|||.||+
T Consensus 15 I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a----------------~--~I~I~i~~~~~~~I~V~DnG~Gi~ 76 (365)
T 1h7s_A 15 IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGA----------------T--NIDLKLKDYGVDLIEVSDNGCGVE 76 (365)
T ss_dssp --------------CEEECCHHHHHHHHHHHHHHTTC----------------S--EEEEEEEGGGTSEEEEEECSCCCC
T ss_pred hccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCC----------------C--EEEEEEEeCCcEEEEEEECCCCcC
Confidence 555666666777654 57899999999999941 2 35555543 346899999999999
Q ss_pred HHHHHHhhchhhccChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCC-CcEEEEecC-CceEEE
Q psy13233 145 KADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNED-SQYIWESDA-SSFSIV 222 (704)
Q Consensus 145 ~~eL~~~LgtIa~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d-~~~~Wes~g-g~f~I~ 222 (704)
.+++...+..++.|....+ .+ .......|.+|+|++|++++| +|+|+|++.+. .++.|..++ |.+...
T Consensus 77 ~~~l~~~f~~~~tsK~~~~----~d-----l~~i~s~G~rG~gl~si~~vs-~v~v~t~~~~~~~~~~~~~~~~G~~~~~ 146 (365)
T 1h7s_A 77 EENFEGLTLKHHTSKIQEF----AD-----LTQVETFGFRGEALSSLCALS-DVTISTCHASAKVGTRLMFDHNGKIIQK 146 (365)
T ss_dssp GGGSGGGGC--------------CC-----TTCSEEESSSSSHHHHHHHHS-EEEEEEECTTCSSCEEEEECTTSCEEEE
T ss_pred HHHHHHHhhhccccccccc----cc-----hhcccccCCCCchhhhhhhhc-cEEEEEccCCCcceEEEEEcCCCceEee
Confidence 9999988888877632211 00 011234799999999999999 99999999754 489999874 766543
Q ss_pred eCCCCCCCCCccEEEEE-eccc--h--hccC-----CHHHHHHHHHHhcccCC
Q psy13233 223 NDPRGDNLKRGTQISLE-LKEE--A--SDFL-----EVNTLKDLIKKYSQFIN 265 (704)
Q Consensus 223 ~~~~~~~~~~GT~I~L~-Lked--~--~e~l-----~~~~lk~likkys~fi~ 265 (704)
.. ....+||+|+++ |-.. . .+|+ +..++.+++++|+-+-|
T Consensus 147 ~~---~~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~al~~p 196 (365)
T 1h7s_A 147 TP---YPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISA 196 (365)
T ss_dssp EE---CCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHCT
T ss_pred cc---cCCCCCcEEEEeecccccchhhhhhccchHHHHHHHHHhhhhhhhcCC
Confidence 32 234799999997 3111 0 1132 24678899999988754
No 37
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.41 E-value=1.3e-13 Score=149.41 Aligned_cols=149 Identities=19% Similarity=0.168 Sum_probs=103.1
Q ss_pred CCCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcC-CCcEEEEEeCCCCCCHHHHHHhhchhhccCh
Q psy13233 82 LYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQ-ENKMLHIIDSGIGMTKADLVKNLGTIAKSGT 160 (704)
Q Consensus 82 LYs~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~-~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt 160 (704)
.-.++...|.|||+||.||.. . .|.|.+.. +...|+|.|||.||+.+++...+...+.|..
T Consensus 22 vi~~~~~vv~eLv~NaiDA~a----------------~--~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~ 83 (367)
T 3h4l_A 22 VITDLTTAVKELVDNSIDANA----------------N--QIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHYTSKI 83 (367)
T ss_dssp HCCSHHHHHHHHHHHHHHTTC----------------S--EEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEEC---
T ss_pred cccCHHHHHHHHHHHHHHCCC----------------C--EEEEEEEeCCEEEEEEEECCCCcChhHhccceeccccCcC
Confidence 345678899999999999942 2 35555533 3468999999999999998855443443322
Q ss_pred hhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecC-CceEEEeCCCCCCCCCccEEEE-
Q psy13233 161 AEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDA-SSFSIVNDPRGDNLKRGTQISL- 238 (704)
Q Consensus 161 ~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~g-g~f~I~~~~~~~~~~~GT~I~L- 238 (704)
..+ +.+ ......|.+|+|++|.++|| +|+|+||+.+..++.|..++ |.+..... ...++||+|++
T Consensus 84 ~~~-~Dl--------~~i~t~GfrGeaL~Si~avS-~l~V~sr~~~~~~~~~~~~~~G~~~~~~~---~~~~~GTtV~v~ 150 (367)
T 3h4l_A 84 AKF-QDV--------AKVQTLGFRGEALSSLCGIA-KLSVITTTSPPKADKLEYDMVGHITSKTT---TSRNKGTTVLVS 150 (367)
T ss_dssp ---------------CCCCEEEETTHHHHHHHHSS-EEEEEEESSTTCEEEEEECTTCCEEEEEE---ECCSSEEEEEEE
T ss_pred Cch-hhh--------hhhhccCccchHHHHhhccC-EEEEEEEECCCCEEEEEEcCCCcEEeecc---ccCCCCeEEEEc
Confidence 211 011 01345688999999999999 79999998775689999874 76654332 23479999999
Q ss_pred ------------EeccchhccCCHHHHHHHHHHhcccC
Q psy13233 239 ------------ELKEEASDFLEVNTLKDLIKKYSQFI 264 (704)
Q Consensus 239 ------------~Lked~~e~l~~~~lk~likkys~fi 264 (704)
+++....+| .++.+++++|+-.-
T Consensus 151 ~LF~n~P~R~k~flk~~~~e~---~~i~~~l~~~Al~~ 185 (367)
T 3h4l_A 151 QLFHNLPVRQKEFSKTFKRQF---TKCLTVIQGYAIIN 185 (367)
T ss_dssp STTTTCHHHHHHHHTTHHHHH---HHHHHHHHHHHHHC
T ss_pred hhhccCchhhhhhccchHHHH---HHHHHHHHHHHhhC
Confidence 455554444 67899999997664
No 38
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.27 E-value=3.1e-12 Score=137.59 Aligned_cols=147 Identities=24% Similarity=0.325 Sum_probs=97.8
Q ss_pred CCCChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCC-cEEEEEeCCCCCCHHHHHHhhchhhccChh
Q psy13233 83 YRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQEN-KMLHIIDSGIGMTKADLVKNLGTIAKSGTA 161 (704)
Q Consensus 83 Ys~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~-~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~ 161 (704)
-..+...|.|||.||.||.. . .|.|.++.++ ..|+|.|||.||+.+++...+...+.|...
T Consensus 26 i~~~~~vv~eLv~NAidA~a----------------~--~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~ 87 (348)
T 3na3_A 26 IQRPANAIKEMIENCLDAKS----------------T--SIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQ 87 (348)
T ss_dssp CCSHHHHHHHHHHHHHHTTC----------------S--EEEEEEEGGGTSEEEEEECSCCCCGGGGGTTTSTTCCSSCC
T ss_pred ccCHHHHHHHHHHHHHHcCC----------------C--EEEEEEEeCCEEEEEEEECCcCcChHHhhhhhccccccccC
Confidence 35778999999999999931 2 3555554433 469999999999999987544333333211
Q ss_pred hHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCC-CcEEEEecCCceE--EEeCCCCCCCCCccEEEE
Q psy13233 162 EFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNED-SQYIWESDASSFS--IVNDPRGDNLKRGTQISL 238 (704)
Q Consensus 162 ~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d-~~~~Wes~gg~f~--I~~~~~~~~~~~GT~I~L 238 (704)
.+ +.+ ......|.+|+|++|..+|| +|+|+|+..++ .++.|...+|... +.+. ..++||+|++
T Consensus 88 ~~-~dl--------~~i~s~GfrGeaL~Si~avs-~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~~----~~~~GTtV~v 153 (348)
T 3na3_A 88 SF-EDL--------ASISTYGFRGEALASISHVA-HVTITTKTADGKCAYRASYSDGKLKAPPKPC----AGNQGTQITV 153 (348)
T ss_dssp CC------------------CCTTCHHHHHHHSS-EEEEEEECTTCSSEEEEEEETTEESSCCEEE----CCCSEEEEEE
T ss_pred cc-hhh--------hccccCCcCChHHHHhhccc-EEEEEEEECCCCceEEEEEeCCEEeeeeeEe----cCCCCcEEEE
Confidence 11 000 01245699999999999999 89999999754 5788887665431 2222 2479999999
Q ss_pred E------------eccchhccCCHHHHHHHHHHhcccC
Q psy13233 239 E------------LKEEASDFLEVNTLKDLIKKYSQFI 264 (704)
Q Consensus 239 ~------------Lked~~e~l~~~~lk~likkys~fi 264 (704)
. |+....+| .++.+++++|+-.-
T Consensus 154 ~~LF~n~P~R~k~lk~~~~e~---~~i~~~l~~~Al~~ 188 (348)
T 3na3_A 154 EDLFYNIATRRKALKNPSEEY---GKILEVVGRYSVHN 188 (348)
T ss_dssp ESTTTTCHHHHHTSCCHHHHH---HHHHHHHHHHHHHC
T ss_pred CcccccCchhhhhccccHHHH---HHHHHHHHHHHhhC
Confidence 4 44443333 67888998887653
No 39
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=98.90 E-value=2.9e-09 Score=106.40 Aligned_cols=160 Identities=18% Similarity=0.165 Sum_probs=88.3
Q ss_pred CChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHH--------HHhhchhh
Q psy13233 85 NKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADL--------VKNLGTIA 156 (704)
Q Consensus 85 ~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL--------~~~LgtIa 156 (704)
++...++|||.||.||... + .--.|.|.++.+ ..|+|.|||.||+.+++ .-.++..-
T Consensus 17 ~~~~~v~Elv~NsiDa~~~------------g--~a~~I~V~i~~~-g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~h 81 (201)
T 3fv5_A 17 RPNHLGQEVIDNSVDEALA------------G--HAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLH 81 (201)
T ss_dssp STHHHHHHHHHHHHHHHHT------------T--CCSEEEEEECTT-SCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC-
T ss_pred ChhhhhHHHHHHHHHHHhc------------C--CCcEEEEEEeCC-CEEEEEECCCCcCcccccccCcchhheeeeeec
Confidence 3478999999999999641 1 123467777654 58999999999999873 21133222
Q ss_pred ccChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCce--EEEeCCCCCCCCCcc
Q psy13233 157 KSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSF--SIVNDPRGDNLKRGT 234 (704)
Q Consensus 157 ~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f--~I~~~~~~~~~~~GT 234 (704)
.+|+ |-... . .-..|..|+|.-|+-.++++++|+|+..+ ..|.....+|.. .+...........||
T Consensus 82 atsK--~~~~~--------~-~~s~GfrGeglssinalS~~l~v~t~~~g-~~~~~~~~~G~~~~~~~~~g~~~~~~~GT 149 (201)
T 3fv5_A 82 AGGK--FSNKN--------Y-QFSGGLHGVGISVVNALSKRVEVNVRRDG-QVYNIAFENGEKVQDLQVVGTCGKRNTGT 149 (201)
T ss_dssp -------------------------------CHHHHHTEEEEEEEEEETT-EEEEEEEETTEEEEEEEEEEECCTTCCEE
T ss_pred cccC--cCCCc--------c-cccCcccceecchhhcccceEEEEEEecC-ceEEEEEeCCEEcccceecccCCCCCCCe
Confidence 2222 31110 1 12469999999999999999999999754 333323233432 222110011147999
Q ss_pred EEEEEeccch--hccCCHHHHHHHHHHhcccC-CcceEEe
Q psy13233 235 QISLELKEEA--SDFLEVNTLKDLIKKYSQFI-NFPIYIW 271 (704)
Q Consensus 235 ~I~L~Lked~--~e~l~~~~lk~likkys~fi-~~PI~l~ 271 (704)
+|++...... ..-.+...|.+.++.|+=.- ...|.+.
T Consensus 150 ~V~f~Pdr~~F~~~~~e~~~i~~~l~~lA~l~pgv~~~l~ 189 (201)
T 3fv5_A 150 SVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFK 189 (201)
T ss_dssp EEEEEECGGGSSCCCCCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred EEEEEECHHHcCCCccCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 9999632221 12246688899999887433 2556664
No 40
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.76 E-value=5.1e-09 Score=116.90 Aligned_cols=146 Identities=19% Similarity=0.289 Sum_probs=92.8
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcC---CCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHH
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQ---ENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFL 164 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~---~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~ 164 (704)
..|+|||+||.||+..- +..+.+.|.+..+. +...|+|.|||+||+.+++...+.....+++.
T Consensus 35 qvl~nLv~NAida~~~g-----------g~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~--- 100 (471)
T 1mu5_A 35 QTVRELIENSLDATDVH-----------GILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY--- 100 (471)
T ss_dssp HHHHHHHHHHHHTTGGG-----------TCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CC---
T ss_pred HHHHHHHHHHHHHhhcC-----------CCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhccccccccc---
Confidence 35689999999996410 00113444444332 23579999999999999998666443222210
Q ss_pred HhhhhhhcccccccccccccccceeeeeeecCE-----EEEEEEeCCCC-cEEEEe----c--C-CceEEEeCCCCCCCC
Q psy13233 165 SQMSDKENIKHDLNDMIGQFGVGFYSAFLVADK-----VLVTTKNNEDS-QYIWES----D--A-SSFSIVNDPRGDNLK 231 (704)
Q Consensus 165 ~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdk-----V~V~Sk~~~d~-~~~Wes----~--g-g~f~I~~~~~~~~~~ 231 (704)
.. ....|.+|+|++++..+++. +.|.|+..++. .+.|.- . + ..+...+.+ .....
T Consensus 101 ----------~~-~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~-~~~~~ 168 (471)
T 1mu5_A 101 ----------VN-RQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVE-NTRGF 168 (471)
T ss_dssp ----------CC-SCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEE-CCTTC
T ss_pred ----------cc-ccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCccccccccc-CCCCC
Confidence 01 24568899999999999886 99999876544 555541 1 2 222222211 12347
Q ss_pred CccEEEEEeccchhccCCHHHHHHHHHHhc
Q psy13233 232 RGTQISLELKEEASDFLEVNTLKDLIKKYS 261 (704)
Q Consensus 232 ~GT~I~L~Lked~~e~l~~~~lk~likkys 261 (704)
+||+|++.+..+..++ ...+.++++.++
T Consensus 169 ~GT~V~v~l~~~~~e~--~~~I~~~l~~~a 196 (471)
T 1mu5_A 169 HGTSVAISIPGDWPKA--KSRIYEYIKRTY 196 (471)
T ss_dssp CEEEEEEEEECCHHHH--HHHHHHHHHHHH
T ss_pred CCEEEEEEEcCCcchH--HHHHHHHHHHHH
Confidence 9999999987654332 257888888887
No 41
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.72 E-value=8.7e-09 Score=112.49 Aligned_cols=156 Identities=13% Similarity=0.171 Sum_probs=95.9
Q ss_pred hhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHH-------hhchhhccC
Q psy13233 87 EIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVK-------NLGTIAKSG 159 (704)
Q Consensus 87 ~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~-------~LgtIa~Sg 159 (704)
...|+|||.||.||.- +. ....|.|.++.+ ..|+|.|||.||+.+++.. .+.+....|
T Consensus 34 ~~~v~Elv~N~iD~a~--~~------------~~~~I~V~i~~~-~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~ 98 (390)
T 1kij_A 34 HHLFKEILDNAVDEAL--AG------------YATEILVRLNED-GSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSG 98 (390)
T ss_dssp HHHHHHHHHHHHHHHH--TT------------SCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEE
T ss_pred HHHHHHHHHHHHHHhh--hC------------CCCEEEEEEEcC-CEEEEEEcCCCCCHHHhhhccccchhhheeeeeec
Confidence 3578999999999963 21 123577777654 4899999999999988642 122222222
Q ss_pred hhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCc--eEEEeCCCCCCCCCccEEE
Q psy13233 160 TAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASS--FSIVNDPRGDNLKRGTQIS 237 (704)
Q Consensus 160 t~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~--f~I~~~~~~~~~~~GT~I~ 237 (704)
.+ |- .. .. ....|.+|+|+.++..++++++|+|+..+ ..|......|. ..+..........+||+|+
T Consensus 99 ~k-f~----~~----~~-~~s~G~~G~Gls~v~als~~~~v~t~~~g-~~~~~~~~~G~~~~~~~~~~~~~~~~~GT~V~ 167 (390)
T 1kij_A 99 GK-FE----QG----AY-KVSGGLHGVGASVVNALSEWTVVEVFREG-KHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVT 167 (390)
T ss_dssp SG-GG----GS----SC-CCCSCSSTTSHHHHHHTEEEEEEEEEETT-EEEEEEEETTEEEEEEEEEEECGGGCCEEEEE
T ss_pred cc-cc----Cc----cc-cccCCCCCcceeeecccccceEEEEecCC-cEEEEEEcCCcccccceeeccccCCCCCcEEE
Confidence 21 31 00 01 12458999999999999999999999743 33433322332 2233221110147999999
Q ss_pred EEeccchhcc----CCHHHHHHHHHHhcccCC--cceEEe
Q psy13233 238 LELKEEASDF----LEVNTLKDLIKKYSQFIN--FPIYIW 271 (704)
Q Consensus 238 L~Lked~~e~----l~~~~lk~likkys~fi~--~PI~l~ 271 (704)
+. ++...| .+.+.|.+.++.++ +++ .-|.+.
T Consensus 168 f~--Pd~~~F~~~~~~~~~l~~rl~~~A-~lnpgv~i~l~ 204 (390)
T 1kij_A 168 FK--PDPEIFGNLRFDPSKIRARLREVA-YLVAGLKLVFQ 204 (390)
T ss_dssp EE--ECHHHHTTCCCCHHHHHHHHHHHH-HHTTTCEEEEE
T ss_pred EE--EChHHhCCccccHHHHHHHHHHhc-CcCCCcEEEEE
Confidence 97 333323 45678888888877 333 445553
No 42
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.70 E-value=1.4e-08 Score=114.84 Aligned_cols=156 Identities=18% Similarity=0.262 Sum_probs=98.2
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcC---CCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHH
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQ---ENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFL 164 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~---~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~ 164 (704)
..|+|||+||.||... . +..+.+.|.+..+. +...|+|.|||+||+.+++...+.....+++.
T Consensus 34 qvl~NLV~NAida~~~-------g----g~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~--- 99 (530)
T 2zbk_B 34 QTVRELIENSLDATDV-------H----GILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY--- 99 (530)
T ss_dssp HHHHHHHHHHHTTTTT-------T----TCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCC---
T ss_pred HHHHHHHHHHHHHHhc-------c----CCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCc---
Confidence 4689999999999631 0 00124556665543 33579999999999999988666544222210
Q ss_pred HhhhhhhcccccccccccccccceeeeeeecC-----EEEEEEEeCCCC-cEEEE----ec--CC-ceEEEeCCCCCCCC
Q psy13233 165 SQMSDKENIKHDLNDMIGQFGVGFYSAFLVAD-----KVLVTTKNNEDS-QYIWE----SD--AS-SFSIVNDPRGDNLK 231 (704)
Q Consensus 165 ~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAd-----kV~V~Sk~~~d~-~~~We----s~--gg-~f~I~~~~~~~~~~ 231 (704)
.. ....|.+|+|++++..+++ ++.|.|+..++. .+.+. .. ++ .....+.+ .....
T Consensus 100 ----------~~-~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~-~~~~~ 167 (530)
T 2zbk_B 100 ----------VN-RQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVE-NTRGF 167 (530)
T ss_dssp ----------CC-SCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEE-CCSSC
T ss_pred ----------cc-ccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccccccccC-CCCCC
Confidence 00 2456899999999999988 799999876544 44444 11 11 12222211 11247
Q ss_pred CccEEEEEeccchhccCCHHHHHHHHHHhccc-CCcceEEe
Q psy13233 232 RGTQISLELKEEASDFLEVNTLKDLIKKYSQF-INFPIYIW 271 (704)
Q Consensus 232 ~GT~I~L~Lked~~e~l~~~~lk~likkys~f-i~~PI~l~ 271 (704)
+||+|++.++.+..++ ...+.+++++++-. -..-|.+.
T Consensus 168 ~GT~V~v~l~~~~~e~--~~~i~~~l~~~Al~~p~v~~~l~ 206 (530)
T 2zbk_B 168 HGTSVAISIPGDWPKA--KSRIYEYIKRTYIITPYAEFIFK 206 (530)
T ss_dssp CEEEEEEEEECCHHHH--HHHHHHHHHHHHHHCTTCCEEEE
T ss_pred CCcEEEEEeccchhhH--HHHHHHHHHHHHHHCCCcEEEEE
Confidence 8999999987764433 25788888887643 23444443
No 43
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1
Probab=98.64 E-value=1.1e-08 Score=95.34 Aligned_cols=93 Identities=23% Similarity=0.273 Sum_probs=68.4
Q ss_pred HHHHHHHhhcccceeEEEEEEccchhhhHHHHHhhhcccccCCCccccc-------------cHHHHh---hChHHHHHH
Q psy13233 552 LQLYTKSLLRGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNV-------------SRETLQ---QHKLLKVIR 615 (704)
Q Consensus 552 l~~~~k~~l~~~~~~V~~V~IS~rl~d~~P~~l~~~q~v~d~~~~~~~~-------------~r~ile---~h~iI~~l~ 615 (704)
+.+|+|+.|++. |++|+||+||+++ |||+ +.+..+++.+| ++++|| +||||+.|+
T Consensus 13 ~~~~~K~~L~dk---V~~V~vS~RL~~s-Pa~l-----v~~e~g~s~~Merimka~~~~~~~~k~~LEINp~HplIk~L~ 83 (126)
T 1sf8_A 13 FIDRVKALLGER---VKDVRLTHRLTDT-PAIV-----STDADEMSTQMAKLFAAAGQKVPEVKYIFELNPDHVLVKRAA 83 (126)
T ss_dssp HHHHHHHHHGGG---SSEEEECCCCSSC-CEEE-----ECCTTSCCHHHHHHHHTTTSCCCCCCCEEEECTTSHHHHHHH
T ss_pred HHHHHHHHhcCc---ccEEEEeecccCC-CEEE-----EecCcccCHHHHHHHHHhccccccCCeeeeECCCCHHHHHHH
Confidence 678999999975 9999999999998 9986 22222222222 333444 999999986
Q ss_pred HHHHHHHHHHhhccCh-HHHHHHHHHhhh-hhcccc-CCCh-hhHHHHhhhhc
Q psy13233 616 KKLIRKALDMFKKLDP-ETYKKFWAEYST-NMKLGV-IEDP-ANRSRLAKLLM 664 (704)
Q Consensus 616 ~~i~~~~~d~~~~l~~-e~~~~~~~~~~~-~~k~g~-~~d~-~~~~~~~~llr 664 (704)
+. . ++ ..-+.++.+|++ .|-.|+ ++|| +|.+|+.+||.
T Consensus 84 ~~----------~-~~~~~k~l~~lLyd~AlL~~G~~leDp~~F~~Ri~~ll~ 125 (126)
T 1sf8_A 84 DT----------E-DEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLV 125 (126)
T ss_dssp HC----------C-SHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred Hh----------c-ChHHHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHh
Confidence 42 1 22 234678999999 668886 9999 89999999984
No 44
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.49 E-value=2.8e-07 Score=100.65 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=96.6
Q ss_pred hhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHH--------HHHhhchhhcc
Q psy13233 87 EIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKAD--------LVKNLGTIAKS 158 (704)
Q Consensus 87 ~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~e--------L~~~LgtIa~S 158 (704)
...+.|||.||.||... ..--.|.|.++.++ .|+|.|||.||+.++ +.-.|+..-.+
T Consensus 33 ~~lv~ElvdNsiD~a~~--------------g~a~~I~V~i~~~g-~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhag 97 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALA--------------GHAKRVDVILHADQ-SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAG 97 (390)
T ss_dssp HHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTTS-CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEE
T ss_pred HHHHHHHHHHHHHHHhc--------------CCCCEEEEEEecCC-EEEEEECCCCcCcccccccCcchhhheeeeeccc
Confidence 56899999999999521 11235777776554 899999999999887 44445443333
Q ss_pred ChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCce--EEEeCCCCCCCCCccEE
Q psy13233 159 GTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSF--SIVNDPRGDNLKRGTQI 236 (704)
Q Consensus 159 gt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f--~I~~~~~~~~~~~GT~I 236 (704)
|+ | ... .- ...-|..|+|.-++=.++.+++|+|+..+ ..|.....+|.. .+..........+||+|
T Consensus 98 sK--f----~~~----~~-~~sgGl~GvGls~vnalS~~l~v~~~r~g-~~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V 165 (390)
T 1s16_A 98 GK--F----SNK----NY-QFSGGLHGVGISVVNALSKRVEVNVRRDG-QVYNIAFENGEKVQDLQVVGTCGKRNTGTSV 165 (390)
T ss_dssp SC--S----SSS----SC-SSCSCCSSCHHHHHHHTEEEEEEEEEETT-EEEEEEEETTEEEEEEEEEEECCTTCCEEEE
T ss_pred CC--c----CCC----cc-cccCCccccchHHHHHhhcccEEEEEECC-cEEEEEEeCCcccccceecccccCCCCceEE
Confidence 32 2 111 01 12458899999999999999999999743 334333333321 12211111112689999
Q ss_pred EEEeccchhcc----CCHHHHHHHHHHhcccC-CcceEEe
Q psy13233 237 SLELKEEASDF----LEVNTLKDLIKKYSQFI-NFPIYIW 271 (704)
Q Consensus 237 ~L~Lked~~e~----l~~~~lk~likkys~fi-~~PI~l~ 271 (704)
+.. ++..-| .+.+.|...++.++=.- ..-|.+.
T Consensus 166 ~f~--Pd~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~ 203 (390)
T 1s16_A 166 HFW--PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFK 203 (390)
T ss_dssp EEE--ECGGGSSCCSCCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred EEE--ECccccCcccccHHHHHHHHHHHHhcCCCcEEEEE
Confidence 987 333233 46678888888776543 3555554
No 45
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.45 E-value=7.1e-08 Score=110.87 Aligned_cols=153 Identities=20% Similarity=0.252 Sum_probs=94.7
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCC---cEEEEEeCCCCCCHHHHHHhhchhhccChhhHH
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQEN---KMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFL 164 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~---~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~ 164 (704)
..|+|||+||.||... ......|.|.+..++ ..|+|.|||.||+.+++...+.....++ .|.
T Consensus 40 ~Vl~ELV~NAIDa~~~-------------~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~ats--kf~ 104 (621)
T 2q2e_B 40 TTVKEAVDNALDACEE-------------AGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGS--RFH 104 (621)
T ss_dssp HHHHHHHHHHHHHHTT-------------TSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC----CC
T ss_pred HHHHHHHHHHHHHHhh-------------cCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhccCC--ccc
Confidence 4679999999999741 111224555544333 5799999999999999987554332221 121
Q ss_pred HhhhhhhcccccccccccccccceeeeeeecCE-----EEEEEEeCCC-CcEEEEe-----cC-CceE-EEeCCCCCCCC
Q psy13233 165 SQMSDKENIKHDLNDMIGQFGVGFYSAFLVADK-----VLVTTKNNED-SQYIWES-----DA-SSFS-IVNDPRGDNLK 231 (704)
Q Consensus 165 ~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdk-----V~V~Sk~~~d-~~~~Wes-----~g-g~f~-I~~~~~~~~~~ 231 (704)
.. ....|..|+|+.++..+++. +.|.|+..++ .++.+.. .+ +... ....+ ....
T Consensus 105 ----~~-------~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~--~~~~ 171 (621)
T 2q2e_B 105 ----AL-------KQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRD--WFRP 171 (621)
T ss_dssp ----CC-------C-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECC--CSCS
T ss_pred ----cc-------cccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhccccccccccccc--CCCC
Confidence 00 12348999999999999887 5999987643 4565553 33 3321 12211 2346
Q ss_pred CccEEEEEeccchhccCC--HHHHHHHHHHhcccC-CcceEEe
Q psy13233 232 RGTQISLELKEEASDFLE--VNTLKDLIKKYSQFI-NFPIYIW 271 (704)
Q Consensus 232 ~GT~I~L~Lked~~e~l~--~~~lk~likkys~fi-~~PI~l~ 271 (704)
+||+|++.++.+ |.. ...|.++++.++-.- ..-|.+.
T Consensus 172 ~GT~V~~~f~~~---~~~~~~~~I~~~L~~lAllnpgv~I~L~ 211 (621)
T 2q2e_B 172 HGTQIELEMRAA---YVKGRRQSIYEYLKATAIVNPHARITLI 211 (621)
T ss_dssp SCCCEEEECSCC---CCCCSSSSSHHHHHHHHHHCCSCEEEEC
T ss_pred CCCEEEEEecCc---cchHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 999999998633 433 256777777776443 3455554
No 46
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.38 E-value=1.2e-06 Score=94.92 Aligned_cols=151 Identities=10% Similarity=0.116 Sum_probs=89.0
Q ss_pred hhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHh
Q psy13233 87 EIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQ 166 (704)
Q Consensus 87 ~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~ 166 (704)
...+.|||.||.||... ..--.|.|.++.++ .|+|+|||.||+. |++- ..-.+|+ |-.
T Consensus 32 ~~~v~ElvdNsiDe~~~--------------g~a~~I~V~i~~~g-~I~V~DnGrGIp~-e~v~---~lhagsK--f~~- 89 (369)
T 3cwv_A 32 HHLVYFLLDVAYEEARR--------------GECRDVVLEVGGDG-SIALFCTSRTVTA-ENLV---RVATGAG--FLG- 89 (369)
T ss_dssp HHHHHHHHHHHHHHHHT--------------TCCSEEEEEECTTS-CEEEEEEESSCCH-HHHH---HHHTTTT--GGG-
T ss_pred HHHHHHHHhhhHhHHhh--------------CCCCEEEEEEeCCC-EEEEEECCCCcCH-hHee---eeecCCC--cCC-
Confidence 46789999999999531 11235777776554 8999999999999 5552 2222222 210
Q ss_pred hhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCce-----EEEeC-CCCCCCCCccEEEEEe
Q psy13233 167 MSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSF-----SIVND-PRGDNLKRGTQISLEL 240 (704)
Q Consensus 167 l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f-----~I~~~-~~~~~~~~GT~I~L~L 240 (704)
.. . .+....- | |.-|+=.++.+++|+|+..+ ..|.....+|.. ...+. +.+....+||+|+..
T Consensus 90 ~~-~----~~~y~vs---G-Gls~vnalSs~l~v~t~r~g-~~~~~~~~~G~~~~~~~~~~~l~~~g~~~~~GT~V~f~- 158 (369)
T 3cwv_A 90 RP-P----GDGWGWD---S-MLVVSLALSSRYQVDIWADG-RQWRVMGEHGHPQGEGAAVTPMEPMPVSAERGVRVHFV- 158 (369)
T ss_dssp SS-C----CCSTTTT---S-SHHHHHHTEEEEEEEEEETT-EEEEEEEETTEECTTCEEESSCCCCSSCCSEEEEEEEE-
T ss_pred Cc-c----ccccccc---C-HHHHHHHhhceEEEEEEECC-CEEEEEEeCCcccccccccCCceEecccCCCCCEEEEE-
Confidence 00 0 0112233 4 77677778899999999743 344333333421 02211 112234789999987
Q ss_pred ccchhcc----CCHHHHHHHHHHhcccC-CcceEEe
Q psy13233 241 KEEASDF----LEVNTLKDLIKKYSQFI-NFPIYIW 271 (704)
Q Consensus 241 ked~~e~----l~~~~lk~likkys~fi-~~PI~l~ 271 (704)
++..-| .+...|.+.++.++=.- ..-|.+.
T Consensus 159 -Pd~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~ 193 (369)
T 3cwv_A 159 -PDATIFEVLAFDRARLSRRCNELAALAPGLRVSFA 193 (369)
T ss_dssp -ECTTTCSCCCCCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred -ECHHHhCCccccHHHHHHHHHHHcCcCCCcEEEEE
Confidence 333333 46678888888887432 2555554
No 47
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.32 E-value=1.6e-06 Score=87.85 Aligned_cols=151 Identities=19% Similarity=0.288 Sum_probs=90.2
Q ss_pred hhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHH-------HH-hhchhhcc
Q psy13233 87 EIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADL-------VK-NLGTIAKS 158 (704)
Q Consensus 87 ~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL-------~~-~LgtIa~S 158 (704)
...++|||.||.||... +.. -.|.|.++.+ ..|+|.|||.||..++. .+ .|+.+-.+
T Consensus 37 ~~lv~ElvdNsiDea~~------------g~~--~~I~V~i~~~-g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag 101 (220)
T 4duh_A 37 HHMVFEVVDNAIDEALA------------GHC--KEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAG 101 (220)
T ss_dssp HHHHHHHHHHHHHHHHH------------SCC--CEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCS
T ss_pred HHHHHHHHHHHHHHHhc------------CCC--CEEEEEEeCC-CcEEEEECCcCcccccccccCcchhhheeeecccC
Confidence 57889999999999632 112 3467777654 58999999999998752 11 23333333
Q ss_pred ChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcE--EEEecC---CceEEEeCCCCCCCCCc
Q psy13233 159 GTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQY--IWESDA---SSFSIVNDPRGDNLKRG 233 (704)
Q Consensus 159 gt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~--~Wes~g---g~f~I~~~~~~~~~~~G 233 (704)
|+ | ... .- .-.-|..|+|.-++=.++.+++|+++..+ ..| .|+ .| ....+.. ....+|
T Consensus 102 ~K--f----d~~----~y-k~SgGlhGvG~svvNAlS~~l~v~v~r~g-~~~~~~f~-~G~~~~~l~~~g----~~~~~G 164 (220)
T 4duh_A 102 GK--F----DDN----SY-KVSGGLHGVGVSVVNALSQKLELVIQREG-KIHRQIYE-HGVPQAPLAVTG----ETEKTG 164 (220)
T ss_dssp SC--C----CTT----C---------CCCHHHHHHTEEEEEEEEEETT-EEEEEEEE-TTEESSSCEEEE----ECSCCE
T ss_pred CC--c----CCC----cc-ccccCccceecchhcccccceEEEEEECC-EEEEEEec-CCcCcCCceecc----ccCCCC
Confidence 32 2 110 01 23459999999999999999999998754 323 333 23 1222222 124799
Q ss_pred cEEEEEeccchhcc-----CCHHHHHHHHHHhcccCC--cceEEec
Q psy13233 234 TQISLELKEEASDF-----LEVNTLKDLIKKYSQFIN--FPIYIWS 272 (704)
Q Consensus 234 T~I~L~Lked~~e~-----l~~~~lk~likkys~fi~--~PI~l~~ 272 (704)
|+|+... +..-| ++.+.|.+.++.++ |++ .-|.++.
T Consensus 165 T~V~F~P--d~~~F~~~~~~~~~~l~~rlrelA-~ln~gv~i~l~d 207 (220)
T 4duh_A 165 TMVRFWP--SLETFTNVTEFEYEILAKRLRELS-FLNSGVSIRLRD 207 (220)
T ss_dssp EEEEEEE--CTTTCCSSCSCCHHHHHHHHHHHH-HHCTTSEEEEEE
T ss_pred cEEEEEE--CHHHhCCcccCCHHHHHHHHHHHH-hcCCCCEEEEEc
Confidence 9999863 33323 35577888888887 554 4555543
No 48
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.32 E-value=1.1e-06 Score=96.39 Aligned_cols=161 Identities=15% Similarity=0.120 Sum_probs=92.0
Q ss_pred hhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHH--------HHHhhchhhcc
Q psy13233 87 EIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKAD--------LVKNLGTIAKS 158 (704)
Q Consensus 87 ~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~e--------L~~~LgtIa~S 158 (704)
...+.|||.||.||.... +.. -.|.|.++.++..|+|.|||.||+.++ +.-.|+....+
T Consensus 54 ~~lv~EivdNsiDe~~~~-----------g~~--~~I~V~i~~~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhag 120 (400)
T 1zxm_A 54 YKIFDEILVNAADNKQRD-----------PKM--SCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTS 120 (400)
T ss_dssp HHHHHHHHHHHHHHHHHC-----------TTC--CEEEEEEETTTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEE
T ss_pred HHHHHHHHhhHHhHHhhc-----------CCC--ceEEEEEECCCCEEEEEECCCcccCccccccCccchhheeeeeccc
Confidence 357899999999996310 112 247777776668999999999999876 33334433333
Q ss_pred ChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeC-CCCcEEEEecCCceEEEeCCCC-CCCCCccEE
Q psy13233 159 GTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNN-EDSQYIWESDASSFSIVNDPRG-DNLKRGTQI 236 (704)
Q Consensus 159 gt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~-~d~~~~Wes~gg~f~I~~~~~~-~~~~~GT~I 236 (704)
|+ |-. . .- .-.-|..|+|.-++=.++.+++|+++.. +...|...-.+|.-.....+-+ ....+||+|
T Consensus 121 sK--f~~----~----~y-kvSgGlhGvGlsvVnAlS~~l~v~v~~~~~g~~~~~~~~~G~~~~~~~~ig~~~~~~GT~V 189 (400)
T 1zxm_A 121 SN--YDD----D----EK-KVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKPFNGEDYTCI 189 (400)
T ss_dssp SC--CCG----G----GC-CCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECCSCCEEEE
T ss_pred CC--CCC----C----cc-cccCCccccceeeeEEeccceEEEEecCCCCcEEEEEEccCccccCcceeccCCCCCccEE
Confidence 32 211 1 01 1246999999999999999999999874 2333332222221111100001 113589999
Q ss_pred EEEeccchh--ccCCHHH---HHHHHHHhcccC-CcceEEe
Q psy13233 237 SLELKEEAS--DFLEVNT---LKDLIKKYSQFI-NFPIYIW 271 (704)
Q Consensus 237 ~L~Lked~~--e~l~~~~---lk~likkys~fi-~~PI~l~ 271 (704)
+......-. .-++.+. |.+.++.++=.- ..-|.+.
T Consensus 190 ~F~Pd~~iF~~~ef~~~~~~~l~~rlrelA~lnpgv~i~l~ 230 (400)
T 1zxm_A 190 TFQPDLSKFKMQSLDKDIVALMVRRAYDIAGSTKDVKVFLN 230 (400)
T ss_dssp EEEECGGGGTCSSCCHHHHHHHHHHHHHHHHHSSSCEEEET
T ss_pred EEEEChHHhCceeecHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 988433221 1124455 556666555222 2455553
No 49
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.29 E-value=7.7e-07 Score=97.22 Aligned_cols=153 Identities=16% Similarity=0.193 Sum_probs=95.3
Q ss_pred ChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHH--------HHHhhchhhc
Q psy13233 86 KEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKAD--------LVKNLGTIAK 157 (704)
Q Consensus 86 ~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~e--------L~~~LgtIa~ 157 (704)
+...+.|||.||.||..+ ..--.|.|.++.++ .|+|.|||.||+.++ +.-.|+..-.
T Consensus 35 l~~lv~ElvdNsiDea~~--------------g~a~~I~V~i~~~g-~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lha 99 (391)
T 1ei1_A 35 LHHMVFEVVDNAIDEALA--------------GHCKEIIVTIHADN-SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHA 99 (391)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------TCCCEEEEEECTTS-CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTE
T ss_pred HHHHHHHHHHhHHHHHhc--------------CCCCEEEEEEeCCC-EEEEEECCCCcccCcccccCcchHHHhheeccc
Confidence 456899999999999631 11225777777654 899999999999877 2223443333
Q ss_pred cChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCC----ceEEEeCCCCCCCCCc
Q psy13233 158 SGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDAS----SFSIVNDPRGDNLKRG 233 (704)
Q Consensus 158 Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg----~f~I~~~~~~~~~~~G 233 (704)
+|+ | ... .- .-.-|..|+|.-|+=.++.+++|+|+..+ ..|.....+| ...+... ...+|
T Consensus 100 gsK--f----~~~----~~-~vSgGl~GvGls~vnalS~~l~v~~~r~g-~~~~~~~~~G~~~~~l~~~~~----~~~~G 163 (391)
T 1ei1_A 100 GGK--F----DDN----SY-KVSGGLHGVGVSVVNALSQKLELVIQREG-KIHRQIYEHGVPQAPLAVTGE----TEKTG 163 (391)
T ss_dssp ESC--S----SSS----SC-SSCSCCSSCHHHHHHHTEEEEEEEEEETT-EEEEEEEETTEESSCCEEEEE----CSCCE
T ss_pred cCC--c----CCC----cc-cccCCccccchHHHHHhcCeEEEEEEeCC-cEEEEEEcCCcccccceeccC----cCCCc
Confidence 332 2 110 01 12458999999999999999999998743 3333332222 1222211 23799
Q ss_pred cEEEEEeccchhcc-----CCHHHHHHHHHHhcccC-CcceEEe
Q psy13233 234 TQISLELKEEASDF-----LEVNTLKDLIKKYSQFI-NFPIYIW 271 (704)
Q Consensus 234 T~I~L~Lked~~e~-----l~~~~lk~likkys~fi-~~PI~l~ 271 (704)
|+|+.. ++..-| .+.+.|...++.++=.- ..-|.+.
T Consensus 164 T~V~f~--Pd~~~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~ 205 (391)
T 1ei1_A 164 TMVRFW--PSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLR 205 (391)
T ss_dssp EEEEEE--ECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred cEEEEE--EChhhhCCccccCHHHHHHHHHHhcccCCCcEEEEE
Confidence 999987 333223 35677888888776443 3555554
No 50
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.27 E-value=2.2e-06 Score=87.15 Aligned_cols=155 Identities=16% Similarity=0.210 Sum_probs=92.1
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHH-------HHHhhchhhccCh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKAD-------LVKNLGTIAKSGT 160 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~e-------L~~~LgtIa~Sgt 160 (704)
..++|||.||.|+... + .--.|.|.++.+ ..|+|.|||.||+.++ +.-.|+..-.+|+
T Consensus 43 ~~v~Eiv~NaiD~~~~------------g--~~~~I~V~i~~~-g~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~K 107 (226)
T 4emv_A 43 HLVWEIVDNAVDEALS------------G--FGDRIDVTINKD-GSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGK 107 (226)
T ss_dssp HHHHHHHHHHHHHHHT------------T--CCSEEEEEECTT-SCEEEEECSSCCCCSBCGGGCBHHHHHHHCBC----
T ss_pred HHHHHHHHHHHHHHhc------------C--CCcEEEEEEeCC-CeEEEEEcCCCccccccccCceehheeEEeecccCc
Confidence 4668999999999631 1 123577777664 4899999999999887 3323433333332
Q ss_pred hhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcE--EEEecC---CceEEEeCCCCCCCCCccE
Q psy13233 161 AEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQY--IWESDA---SSFSIVNDPRGDNLKRGTQ 235 (704)
Q Consensus 161 ~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~--~Wes~g---g~f~I~~~~~~~~~~~GT~ 235 (704)
|-.. .- ...-|..|+|.-++=.++.+++|+++..+ ..| .|+..+ ....+... .....+||+
T Consensus 108 --fd~~--------~y-k~SgGlhGvG~svvNALS~~l~v~v~r~g-~~~~q~f~~Gg~~~~~l~~ig~--~~~~~~GT~ 173 (226)
T 4emv_A 108 --FGQG--------GY-KTSGGLHGVGSSVVNALSSWLEVEITRDG-AVYKQRFENGGKPVTTLKKIGT--ALKSKTGTK 173 (226)
T ss_dssp ---------------------CGGGCCHHHHHHTEEEEEEEEEETT-EEEEEEEETTTEESSCSEEEEE--CCTTCCEEE
T ss_pred --cCcc--------ce-EeccccccccchhhhhcccceEEEEEeCC-cEEEEEECCCCEEcCCceEecc--cCCCCCCeE
Confidence 3111 00 23459999999999999999999998743 333 343221 12222111 112479999
Q ss_pred EEEEeccchh--ccCCHHHHHHHHHHhcccCC--cceEEec
Q psy13233 236 ISLELKEEAS--DFLEVNTLKDLIKKYSQFIN--FPIYIWS 272 (704)
Q Consensus 236 I~L~Lked~~--e~l~~~~lk~likkys~fi~--~PI~l~~ 272 (704)
|+......-. .-++.+.|.+.++.++ |++ ..|.++.
T Consensus 174 V~F~PD~~iF~~~~~~~~~l~~rlrelA-~ln~gv~i~l~d 213 (226)
T 4emv_A 174 VTFMPDATIFSTTDFKYNTISERLNESA-FLLKNVTLSLTD 213 (226)
T ss_dssp EEEEECTTTCSCCCCCHHHHHHHHHHHH-HHHCSCEEEEEE
T ss_pred EEEEECHHHcCCCCcCHHHHHHHHHHHh-hcCCCCEEEEEe
Confidence 9987433321 1246788888888887 553 5666653
No 51
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=97.94 E-value=2.3e-05 Score=85.91 Aligned_cols=157 Identities=18% Similarity=0.228 Sum_probs=86.6
Q ss_pred CChhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHH-------HHh-hchhh
Q psy13233 85 NKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADL-------VKN-LGTIA 156 (704)
Q Consensus 85 ~~~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL-------~~~-LgtIa 156 (704)
++...+.|+|.||.|+.-. +... .|.|.++.+ +.|+|.|||.||+.+.. .+. |+.+-
T Consensus 50 ~~~hlv~EivdNsiDea~a------------g~~~--~I~V~i~~d-gsI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lh 114 (408)
T 3lnu_A 50 RPNHLAQEVIDNSVDEALA------------GHAK--QIEVTLYKD-GSCEVSDDGRGMPVDIHPEEKIPGVELILTRLH 114 (408)
T ss_dssp STHHHHHHHHHHHHHHHHT------------TSCC--EEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHHHHHHHCC-
T ss_pred CcchhhHHHHHHHHHHhhc------------CCCc--eEEEEEeCC-CeEEEEEcCCCCCcccccccCCcchheEEEecc
Confidence 3477899999999999521 1222 467777654 58999999999988752 122 33333
Q ss_pred ccChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcE--EEEecC---CceEEEeCCCCCCCC
Q psy13233 157 KSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQY--IWESDA---SSFSIVNDPRGDNLK 231 (704)
Q Consensus 157 ~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~--~Wes~g---g~f~I~~~~~~~~~~ 231 (704)
.+|+ |-.. .- .-.-|..|+|.-++=.++.+++|+++..+ ..| .|+ .| ....+... .....
T Consensus 115 aggK--fd~~--------~y-kvSgGlhGvG~svVNALS~~l~v~v~rdG-k~~~q~f~-~G~~~~~l~~ig~--~~~~~ 179 (408)
T 3lnu_A 115 AGGK--FNNR--------NY-TFSGGLHGVGVSVVNALSTKVELFIKREG-SEHRMEFR-DGNAASKLEVVGT--VGKKN 179 (408)
T ss_dssp ------------------------------CHHHHHHTEEEEEEEEEETT-EEEEEEEE-TTEECSCCEEEEE--CCTTC
T ss_pred cCCC--cCCC--------ce-eecCCccccccceehhccCeEEEEEEECC-EEEEEEEC-CCEECCCceEecc--CcCCC
Confidence 3332 3111 00 23458999999999999999999998754 333 333 23 22222111 11236
Q ss_pred CccEEEEEeccchh--ccCCHHHHHHHHHHhcccC-CcceEEe
Q psy13233 232 RGTQISLELKEEAS--DFLEVNTLKDLIKKYSQFI-NFPIYIW 271 (704)
Q Consensus 232 ~GT~I~L~Lked~~--e~l~~~~lk~likkys~fi-~~PI~l~ 271 (704)
.||+|+......-. .-++.+.|...++.++=.. ..-|.+.
T Consensus 180 ~GT~V~F~PD~~iF~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~ 222 (408)
T 3lnu_A 180 TGTRLRFWADPKYFDTPKFNVRALRHLLRAKAVLCPGLTVKLH 222 (408)
T ss_dssp CEEEEEEEECGGGSSCSCCCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred CCcEEEEEECHHHhCCCCcCHHHHHHHHHHHHhhcCCCEEEEE
Confidence 99999987433321 1246677888887776332 2456664
No 52
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=97.84 E-value=4.7e-05 Score=75.83 Aligned_cols=136 Identities=20% Similarity=0.305 Sum_probs=81.0
Q ss_pred hhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHh
Q psy13233 87 EIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQ 166 (704)
Q Consensus 87 ~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~ 166 (704)
...++|||.||.|+.-. +... .|.|.++.+ ..|+|.|||.||+.+ ..+.|+...
T Consensus 33 ~~~v~Elv~NsiD~~~a------------g~~~--~I~V~i~~~-g~i~V~DnG~Gip~~-------~h~~~~~~~---- 86 (198)
T 3ttz_A 33 HHLVWEIVDNSIDEALA------------GYAN--QIEVVIEKD-NWIKVTDNGRGIPVD-------IQEKMGRPA---- 86 (198)
T ss_dssp HHHHHHHHHHHHHHHHT------------TSCC--EEEEEEEGG-GEEEEEECSSCCCCS-------BCTTTSSBH----
T ss_pred HHHHHHHHHHHHhHHhc------------CCCc--EEEEEEeCC-CeEEEEECCCCcccc-------ccCcCCCcc----
Confidence 56789999999998421 1122 466666554 499999999999975 334444322
Q ss_pred hhhhhcccccccccccccccceeee-eeecCEEEEEEEeCCCCcEEEEe-cC---CceEEEeCCCCCCCCCccEEEEEec
Q psy13233 167 MSDKENIKHDLNDMIGQFGVGFYSA-FLVADKVLVTTKNNEDSQYIWES-DA---SSFSIVNDPRGDNLKRGTQISLELK 241 (704)
Q Consensus 167 l~~~~~~~~d~~~~IGqFGIGFySa-FmVAdkV~V~Sk~~~d~~~~Wes-~g---g~f~I~~~~~~~~~~~GT~I~L~Lk 241 (704)
...+ |+ .|+ =.++.+++|+|+..+ ..|..+. .| ....+... ...+||+|+..
T Consensus 87 -----------~e~i--~t---~SvVNALS~~l~v~v~r~g-~~~~~~f~~G~~~~~l~~i~~----~~~~GT~V~F~-- 143 (198)
T 3ttz_A 87 -----------VEVI--LT---SSVVNALSQDLEVYVHRNE-TIYHQAYKKGVPQFDLKEVGT----TDKTGTVIRFK-- 143 (198)
T ss_dssp -----------HHHH--HH---TCHHHHTEEEEEEEEEETT-EEEEEEEETTEESSCCEEEEE----CSCCEEEEEEE--
T ss_pred -----------cccc--ce---eEehhhhcCeEEEEEEECC-cEEEEEEeCCEECCCceeccC----CCCCCcEEEEE--
Confidence 1111 22 222 234689999998754 3332222 33 12222221 23799999987
Q ss_pred cchhcc-----CCHHHHHHHHHHhcccCC--cceEEec
Q psy13233 242 EEASDF-----LEVNTLKDLIKKYSQFIN--FPIYIWS 272 (704)
Q Consensus 242 ed~~e~-----l~~~~lk~likkys~fi~--~PI~l~~ 272 (704)
++..-| .+.+.|.+.++.++ |++ ..|.+..
T Consensus 144 Pd~~iF~~~~~~~~~~l~~rlrelA-~ln~gv~i~l~d 180 (198)
T 3ttz_A 144 ADGEIFTETTVYNYETLQQRIRELA-FLNKGIQITLRD 180 (198)
T ss_dssp ECTTTCCSCCCCCHHHHHHHHHHHH-HHSTTCEEEEEE
T ss_pred ECHHHhccCCccCHHHHHHHHHHHh-hcCCCCEEEEEe
Confidence 444444 56688888888887 554 4555543
No 53
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.46 E-value=0.0003 Score=77.48 Aligned_cols=129 Identities=17% Similarity=0.245 Sum_probs=79.0
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHH--------hhchhhccC
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVK--------NLGTIAKSG 159 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~--------~LgtIa~Sg 159 (704)
..+.|+|.||+|+.... ..--.|.|.++.++..|+|.|||.||..+.... .|+.+-.+|
T Consensus 67 ~lv~EivdNaiDe~~~~-------------g~~~~I~V~i~~d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGg 133 (418)
T 1pvg_A 67 KIFDEILVNAADNKVRD-------------PSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSS 133 (418)
T ss_dssp HHHHHHHHHHHHHHHHC-------------TTCCEEEEEEETTTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEES
T ss_pred HHHHHHHhCHHHHHHhc-------------CCCCEEEEEEECCCCEEEEEECCCcccCcccccCCcccceEEEEEEeccc
Confidence 37899999999996320 112357777777778999999999998654211 233333333
Q ss_pred hhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeC-CCCcE--EEEecCC---ceEEEeCCCCCCCCCc
Q psy13233 160 TAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNN-EDSQY--IWESDAS---SFSIVNDPRGDNLKRG 233 (704)
Q Consensus 160 t~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~-~d~~~--~Wes~gg---~f~I~~~~~~~~~~~G 233 (704)
+ | ..+ .-.-.-|..|||.-.+=.++.+++|+++.. ++..| .|+...+ .-.|... ....+|
T Consensus 134 K--f----d~~-----~ykvSGGLhGVG~SvVNALS~~l~V~v~r~rdGk~y~q~f~~G~~~~~~p~i~~~---~~~~tG 199 (418)
T 1pvg_A 134 N--Y----DDD-----EKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSY---KKGPSY 199 (418)
T ss_dssp C--C----CTT-----SCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEEC---CSSCCE
T ss_pred c--c----CCC-----ceeccCCccceeeeeeeeccceEEEEEEECCCCcEEEEEEEcCCCccCCCeeccc---CCCCCc
Confidence 2 2 000 001234999999988888899999999863 33333 3442201 1123322 123689
Q ss_pred cEEEEEeccc
Q psy13233 234 TQISLELKEE 243 (704)
Q Consensus 234 T~I~L~Lked 243 (704)
|+|+.....+
T Consensus 200 T~V~F~PD~~ 209 (418)
T 1pvg_A 200 TKVTFKPDLT 209 (418)
T ss_dssp EEEEEEECGG
T ss_pred eEEEEEEChH
Confidence 9999875544
No 54
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.33 E-value=0.00013 Score=69.46 Aligned_cols=55 Identities=22% Similarity=0.302 Sum_probs=34.3
Q ss_pred HHHhHHhHHHHHHHH---HhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHH
Q psy13233 90 LRELISNASDALDKI---RLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLV 149 (704)
Q Consensus 90 LRELIqNA~DA~~k~---r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~ 149 (704)
|.+||.||..+.... +...-+ .....+.|.+..+.+.-.|+|.|||.||+.+++.
T Consensus 52 l~nLl~NAik~~~~~~~~~~~~~~-----~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~ 109 (189)
T 1i58_A 52 LLHLLRNAIDHGIEPKEERIAKGK-----PPIGTLILSARHEGNNVVIEVEDDGRGIDKEKII 109 (189)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHTS-----CSSEEEEEEEEEETTEEEEEEEECSSCCCHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccC-----CCCCeEEEEEEecCCEEEEEEEeCCCCcCHHHHh
Confidence 889999999984100 000000 0123344555555555679999999999999874
No 55
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.25 E-value=0.00026 Score=76.23 Aligned_cols=116 Identities=19% Similarity=0.168 Sum_probs=63.5
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQM 167 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l 167 (704)
..|.+||.||..|...-.- .+ ...+.+.|.+..+.+.-.|+|.|+|.||+.+++..-+..-. ++...- ..
T Consensus 234 ~il~NLl~NAik~~~~~~~---~~----~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~-~~~~~~--~~ 303 (394)
T 2btz_A 234 HMLFELFKNAMRATVESHE---SS----LILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMY-STAPTP--QP 303 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTT---TC----SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCTTT-TCCC------
T ss_pred HHHHHHHHHHHHHhhhccc---cC----CCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhcccc-cCCCCC--Cc
Confidence 5678999999999753100 00 11234556665555556799999999999999885442211 111000 00
Q ss_pred hhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCceEEEeCCCCCCCCCccEEEEEecc
Q psy13233 168 SDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQISLELKE 242 (704)
Q Consensus 168 ~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f~I~~~~~~~~~~~GT~I~L~Lke 242 (704)
. ......+.+|+|++-|-.+++. -||...+... .+.||+++|.|.-
T Consensus 304 ~-------~~~~~~~G~GLGL~i~~~i~~~-----------------~gG~i~v~s~-----~g~Gt~f~i~lP~ 349 (394)
T 2btz_A 304 G-------TGGTPLAGFGYGLPISRLYAKY-----------------FQGDLQLFSM-----EGFGTDAVIYLKA 349 (394)
T ss_dssp -----------------CCHHHHHHHHHHH-----------------TTCEEEEEEE-----TTTEEEEEEEEES
T ss_pred c-------cCCCCCCCccCCHHHHHHHHHH-----------------hCCEEEEEec-----CCCceEEEEEecC
Confidence 0 0123456789998766555432 1345555442 2579999999864
No 56
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.24 E-value=0.0001 Score=70.91 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=45.2
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQM 167 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l 167 (704)
..|.+||+||..+.. ....|.|...... |+|.|||.||+.+++..-+.. ..++.
T Consensus 120 ~il~nLl~NAi~~~~----------------~~~~i~i~~~~~~--i~V~D~G~Gi~~~~~~~if~~-f~~~~------- 173 (222)
T 3jz3_A 120 LLVRNLLDNAVRYSP----------------QGSVVDVTLNADN--FIVRDNGPGVTPEALARIGER-FYRPP------- 173 (222)
T ss_dssp HHHHHHHHHHHHTCC----------------TTCEEEEEECSSE--EEEECSCC--------------------------
T ss_pred HHHHHHHHHHHHcCC----------------CCCeEEEEEccCe--EEEEECCCCCCHHHHHHHHhh-hccCC-------
Confidence 366788888887731 1234666664433 999999999999987743321 11110
Q ss_pred hhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCceEEEeCCCCCCCCCccEEEEEecc
Q psy13233 168 SDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQISLELKE 242 (704)
Q Consensus 168 ~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f~I~~~~~~~~~~~GT~I~L~Lke 242 (704)
....+..|+|++-+-.++... ||.+.+... .+.||+|++.+..
T Consensus 174 ----------~~~~~g~GlGL~i~~~i~~~~-----------------gG~i~i~s~-----~~~Gt~v~~~~P~ 216 (222)
T 3jz3_A 174 ----------GQTATGSGLGLSIVQRIAKLH-----------------GMNVEFGNA-----EQGGFEAKVSWLE 216 (222)
T ss_dssp ------------------CTHHHHHHHHHHT-----------------TCEEECCBC-----TTSSBEEEEECCC
T ss_pred ----------CCCCCcccccHHHHHHHHHHc-----------------CCEEEEEcC-----CCCcEEEEEeecC
Confidence 112246789987654443321 244444332 3689999998754
No 57
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.24 E-value=0.00018 Score=65.56 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=34.4
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHH
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVK 150 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~ 150 (704)
..|.+||.||..+.. ..+.|.+..+.+.-.|+|.|||.||+.+++..
T Consensus 47 ~il~nLl~NAi~~~~----------------~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~ 93 (152)
T 1id0_A 47 EVMGNVLDNACKYCL----------------EFVEISARQTDEHLYIVVEDDGPGIPLSKREV 93 (152)
T ss_dssp HHHHHHHHHHHHHCS----------------SEEEEEEEECSSCEEEEEEESSSCCCGGGTTG
T ss_pred HHHHHHHHHHHHhCc----------------CeEEEEEEecCCEEEEEEEeCCCCcCHHHHHH
Confidence 466789999988731 13455555555566899999999999887663
No 58
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.23 E-value=0.00019 Score=71.47 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=34.9
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHH
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVK 150 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~ 150 (704)
..|.+||.||.++.. ....+.|.+..+.+.-.|+|.|||.||+.+++..
T Consensus 158 ~il~nLl~NA~~~~~--------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~ 206 (268)
T 4ew8_A 158 QTLDHLVENALRQTP--------------PGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAH 206 (268)
T ss_dssp HHHHHHHHHHHHHSC--------------TTCEEEEEEEECSSEEEEEEEESSCCCCHHHHTT
T ss_pred HHHHHHHHHHHHhCC--------------CCCEEEEEEEecCCEEEEEEEcCCCCCCHHHHHH
Confidence 467888888888741 1234555555555556799999999999987763
No 59
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.18 E-value=0.00024 Score=64.85 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=35.5
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNL 152 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~L 152 (704)
..|.+||.||..+.. ...+.|.+..+.+.-.|+|.|||.||+.+++...+
T Consensus 49 ~il~nLl~NA~~~~~---------------~~~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if 98 (150)
T 1ysr_A 49 LAVDNAIANAVKHGG---------------ATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVF 98 (150)
T ss_dssp HHHHHHHHHHHHTTC---------------CSEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHH
T ss_pred HHHHHHHHHHHhcCC---------------CcEEEEEEEecCCEEEEEEEECCCCCCHHHHHHHh
Confidence 456789999988731 12445555555555679999999999999887544
No 60
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.17 E-value=8.4e-05 Score=70.13 Aligned_cols=103 Identities=21% Similarity=0.259 Sum_probs=59.0
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCC--cEEEEEeCCCCCCHHHHHHhhchhhccChhhHHH
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQEN--KMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLS 165 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~--~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~ 165 (704)
..|.+||.||..+.. ....+.|.+.....+ -.|+|.|||.||+.+++...+.. ..++..
T Consensus 46 ~il~nLl~NAi~~~~--------------~~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~-~~~~~~---- 106 (177)
T 3sl2_A 46 QVLDNIISNALKYSP--------------EGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDR-FYRVDK---- 106 (177)
T ss_dssp HHHHHHHHHHHHTCC--------------TTCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTST-TCCCC-----
T ss_pred HHHHHHHHHHHHhCC--------------CCCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhh-hccCCC----
Confidence 367789999988731 123455666444333 46899999999998876633321 111110
Q ss_pred hhhhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCceEEEeCCCCCCCCCccEEEEEec
Q psy13233 166 QMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQISLELK 241 (704)
Q Consensus 166 ~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f~I~~~~~~~~~~~GT~I~L~Lk 241 (704)
.. ....+..|+|++.+-.++... +|.+.+... ...||+++|.|.
T Consensus 107 ---------~~-~~~~~g~GlGL~iv~~~~~~~-----------------~G~i~i~~~-----~~~Gt~~~i~lP 150 (177)
T 3sl2_A 107 ---------AR-TRKLGGTGLGLAIAKEMVQAH-----------------GGDIWADSI-----EGKGTTITFTLP 150 (177)
T ss_dssp ---------------CCCCCCHHHHHHHHHHHT-----------------TCCEEEEEE-----TTTEEEEEEEEE
T ss_pred ---------CC-CCCCCCCCcCHHHHHHHHHHc-----------------CCEEEEEec-----CCCCeEEEEEEe
Confidence 00 122357899987654443321 345555442 256899888864
No 61
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.13 E-value=0.00029 Score=75.94 Aligned_cols=117 Identities=21% Similarity=0.181 Sum_probs=68.0
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQM 167 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l 167 (704)
..|.+||.||..|...-.-. + ...+.+.|.+..+.+.-.|+|.|+|.||+.+++..-+.. ..++... ..+
T Consensus 233 ~il~NLl~NAik~~~~~~~~---~----~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~-f~~~~~~--~~~ 302 (394)
T 2e0a_A 233 HMLFELFKNAMRATVEHQEN---Q----PSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSY-TYSTAPT--PVM 302 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTT---S----SSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTST-TCCSSCC--C--
T ss_pred HHHHHHHHHHHHHHHhcccc---c----CCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCc-CccCCCC--CCc
Confidence 56889999999998642100 0 112345566655555567999999999999988854422 1111100 000
Q ss_pred hhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCceEEEeCCCCCCCCCccEEEEEecc
Q psy13233 168 SDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQISLELKE 242 (704)
Q Consensus 168 ~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f~I~~~~~~~~~~~GT~I~L~Lke 242 (704)
+. ......+.+|+|++-|-.+++. .||...+... .+.||+++|.|.-
T Consensus 303 -~~-----~~~~~~~G~GLGL~i~~~i~~~-----------------~gG~i~v~s~-----~g~Gt~f~i~lP~ 349 (394)
T 2e0a_A 303 -DN-----SRNAPLAGFGYGLPISRLYAKY-----------------FQGDLNLYSL-----SGYGTDAIIYLKA 349 (394)
T ss_dssp ----------CCCSSCSSCHHHHHHHHHHH-----------------TTCEEEEEEE-----TTTEEEEEEEEES
T ss_pred -Cc-----CCCCCCCCcccCHHHHHHHHHH-----------------hCCEEEEEec-----CCccEEEEEEeCC
Confidence 00 0123457789999766554431 1345555442 2579999999864
No 62
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.12 E-value=0.00027 Score=68.93 Aligned_cols=51 Identities=27% Similarity=0.428 Sum_probs=36.2
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNL 152 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~L 152 (704)
..|.+||.||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++...+
T Consensus 126 ~il~nLl~NA~~~~~--------------~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if 176 (244)
T 3d36_A 126 QCLLNVMKNAIEAMP--------------NGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLG 176 (244)
T ss_dssp HHHHHHHHHHHHTCT--------------TCEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHTT
T ss_pred HHHHHHHHHHHHhcc--------------CCCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHh
Confidence 356788888887741 123455666666555679999999999999877433
No 63
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.09 E-value=0.00033 Score=75.81 Aligned_cols=117 Identities=16% Similarity=0.190 Sum_probs=67.3
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQM 167 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l 167 (704)
..|.+||.||..|...-.- .+ ...+.+.|.+..+.+.-.|+|.|+|.||+.+++..-+.. ..++... ...
T Consensus 246 ~il~NLl~NAik~t~~~~~---~~----~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~-f~~~~~~--~~~ 315 (407)
T 2q8g_A 246 HMVFELFKNAMRATMEHHA---NR----GVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNY-MYSTAPR--PRV 315 (407)
T ss_dssp HHHHHHHHHHHHHHHHHST---TT----CCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCT-TTTCCCC--CCS
T ss_pred HHHHHHHHHHHHHHhhccc---cC----CCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCc-cccCCCC--CCc
Confidence 4678999999999754210 00 112345566555555567999999999999988744321 1111100 000
Q ss_pred hhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCceEEEeCCCCCCCCCccEEEEEecc
Q psy13233 168 SDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQISLELKE 242 (704)
Q Consensus 168 ~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f~I~~~~~~~~~~~GT~I~L~Lke 242 (704)
+ .......|.+|+|++-|-.+++. .||...+... .+.||+++|.|.-
T Consensus 316 -~-----~~~~~~~~G~GLGL~Ivr~i~~~-----------------~gG~i~v~s~-----~g~Gt~f~i~LP~ 362 (407)
T 2q8g_A 316 -E-----TSRAVPLAGFGYGLPISRLYAQY-----------------FQGDLKLYSL-----EGYGTDAVIYIKA 362 (407)
T ss_dssp -S-----CCSCCCSSCTTCHHHHHHHHHHH-----------------TTCEEEEEEE-----TTTEEEEEEEEES
T ss_pred -c-----ccCCCCCCCcCCCHHHHHHHHHH-----------------hCCEEEEEEc-----CCCceEEEEEECC
Confidence 0 00123457789998665544431 1345555432 2679999999864
No 64
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.08 E-value=0.00029 Score=76.67 Aligned_cols=118 Identities=18% Similarity=0.181 Sum_probs=65.1
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQM 167 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l 167 (704)
..|.+||.||..|.....- ..+ ...+.+.|.+..+.+.-.|+|.|||.||+.+++..-+-. ..++... ..+
T Consensus 256 ~vl~NLl~NAik~~~~~~~---~~~---~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~~-f~~~~~~--~~~ 326 (419)
T 1y8o_A 256 HMLFELFKNSMRATVELYE---DRK---EGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNY-MYSTAPR--PSL 326 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHT---TCS---SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCT-TTC---------
T ss_pred HHHHHHHHHHHHHHHhhcc---ccC---CCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhCc-ccccCCC--CCc
Confidence 4678999999999864210 000 012345566655555567999999999999998754422 1111100 000
Q ss_pred hhhhcccccccccccccccceeeeeeecCEEEEEEEeCCCCcEEEEecCCceEEEeCCCCCCCCCccEEEEEecc
Q psy13233 168 SDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQISLELKE 242 (704)
Q Consensus 168 ~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~~d~~~~Wes~gg~f~I~~~~~~~~~~~GT~I~L~Lke 242 (704)
.. ......+.+|+|++-|-.+++. -||...+... .+.||+++|.|.-
T Consensus 327 ~~------~~~~~~~G~GLGL~I~k~iv~~-----------------~gG~I~v~s~-----~g~Gt~f~i~LP~ 373 (419)
T 1y8o_A 327 EP------TRAAPLAGFGYGLPISRLYARY-----------------FQGDLKLYSM-----EGVGTDAVIYLKA 373 (419)
T ss_dssp ------------CC--CTTHHHHHHHHHHH-----------------TTCEEEEEEE-----TTTEEEEEEEEES
T ss_pred cc------cCCCCcCCeecCHHHHHHHHHH-----------------hCCEEEEEec-----CCCCEEEEEEecC
Confidence 00 0123456789998766544432 1345555442 2679999999864
No 65
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.07 E-value=0.00023 Score=64.57 Aligned_cols=49 Identities=20% Similarity=0.181 Sum_probs=34.4
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHH
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVK 150 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~ 150 (704)
..|.+||+||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++..
T Consensus 50 ~il~nll~NAi~~~~--------------~~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~ 98 (152)
T 3a0y_A 50 QVLINLVQNAIEATG--------------ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEK 98 (152)
T ss_dssp HHHHHHHHHHHHHHC--------------TTCEEEEEEEECSSEEEEEEEEESCCCCGGGTTG
T ss_pred HHHHHHHHHHHHhcC--------------CCCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHh
Confidence 456789999998851 1234455555554456789999999999887663
No 66
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.02 E-value=0.00053 Score=62.67 Aligned_cols=83 Identities=20% Similarity=0.266 Sum_probs=49.3
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHHhhchhhccChhhHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQM 167 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~~LgtIa~Sgt~~f~~~l 167 (704)
..|.|||.||..+... . .....+.|.+..+.+.-.|+|.|||.||+ ++...+.. ..++
T Consensus 42 ~il~~l~~Nai~h~~~-------~----~~~~~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~~~-~~~~-------- 99 (145)
T 1th8_A 42 TVVSEAVTNAIIHGYN-------N----DPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQP-LFTT-------- 99 (145)
T ss_dssp HHHHHHHHHHHHTTST-------T----CTTSEEEEEEEEETTEEEEEEEECSSCCS--CHHHHTCC-C-----------
T ss_pred HHHHHHHHHHHHHhcC-------C----CCCCEEEEEEEEeCCEEEEEEEECCCCcC--hHHHhhcc-cccC--------
Confidence 4678999999877421 0 01234555555555556799999999999 44432211 1110
Q ss_pred hhhhcccccccccccccccceeeeeeecCEEEEEE
Q psy13233 168 SDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTT 202 (704)
Q Consensus 168 ~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~S 202 (704)
....+..|+|++-+-.+++++.+.+
T Consensus 100 ----------~~~~~~~GlGL~iv~~~~~~i~~~~ 124 (145)
T 1th8_A 100 ----------KPELERSGMGFTIMENFMDEVIVES 124 (145)
T ss_dssp --------------CCCSCHHHHHHHHSSEEEEEE
T ss_pred ----------CCCCCCCcchHHHHHHHHheEEEEe
Confidence 0112457999988877777665554
No 67
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=96.92 E-value=0.00017 Score=71.91 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=33.4
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEE--cCCCcEEEEEeCCCCCCHHHHHHhh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKA--DQENKMLHIIDSGIGMTKADLVKNL 152 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~--d~~~~~L~I~DNGiGMT~~eL~~~L 152 (704)
..|..||+||..+... ..+...|.|.. +.+.-.|+|.|||.||+.+++..-|
T Consensus 141 ~il~NLl~NAik~~~~-------------~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 194 (258)
T 2c2a_A 141 QVLLNLLNNGVKYSKK-------------DAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIF 194 (258)
T ss_dssp HHHHHHHHHHHHTCCT-------------TCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGGG
T ss_pred HHHHHHHHHHHhcCcC-------------CCCceeEEEEEecCCCeEEEEEEecCCCCCHHHHHhhc
Confidence 4567888888877310 11223355544 4444568999999999998776433
No 68
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=96.90 E-value=0.00039 Score=74.58 Aligned_cols=57 Identities=28% Similarity=0.406 Sum_probs=38.5
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHH
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVK 150 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~ 150 (704)
..|.+||.||..|..... ...+ ...+.+.|.+..+.+.-.|+|.|||.||+.+++..
T Consensus 241 ~il~NLl~NAik~~~~~~---~~~~---~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~ 297 (388)
T 1gkz_A 241 YILPELLKNAMRATMESH---LDTP---YNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDR 297 (388)
T ss_dssp HHHHHHHHHHHHHHHHTC---TTCT---TSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTT
T ss_pred HHHHHHHHHHHHHhhccc---cCCC---CCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHH
Confidence 578999999999975310 0000 11235556665555556799999999999988764
No 69
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=96.88 E-value=0.00032 Score=64.89 Aligned_cols=47 Identities=13% Similarity=0.182 Sum_probs=33.6
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHHH
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVK 150 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~~ 150 (704)
..|.+||+||..+. ...+.|.+..+.+.-.|+|.|||.||+.+++..
T Consensus 50 ~il~nll~NAik~~----------------~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~ 96 (161)
T 1bxd_A 50 RAVANMVVNAARYG----------------NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKH 96 (161)
T ss_dssp HHHHHHHHHHHTTC----------------CSCEEEEEEEETTEEEEEEEEESSCSCTTGGGC
T ss_pred HHHHHHHHHHHhhc----------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHH
Confidence 45678888887652 234556666655556799999999999887663
No 70
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.47 E-value=0.0018 Score=69.78 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=34.5
Q ss_pred HHHhHHhHHHHH----HHHHhhcccCCCccCCCCCceEEEEE--cCCCcEEEEEeCCCCCCHHHHH
Q psy13233 90 LRELISNASDAL----DKIRLLSLTDASVLDANPELAIRIKA--DQENKMLHIIDSGIGMTKADLV 149 (704)
Q Consensus 90 LRELIqNA~DA~----~k~r~~~ltd~~~~~~~~~l~I~I~~--d~~~~~L~I~DNGiGMT~~eL~ 149 (704)
|.+||.||.|+. +.|+. . +......|.|.+ +.+.-.|+|.|||.||+.+.+.
T Consensus 111 l~nLl~NAi~h~~e~~~~r~~--~------gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~ 168 (379)
T 1b3q_A 111 LLHLLRNAIDHGIEPKEERIA--K------GKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKII 168 (379)
T ss_dssp HHHHHHHHHHHTSCCHHHHHH--T------TCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHh--c------CCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHHH
Confidence 899999999995 11111 0 112234455554 4444568999999999999874
No 71
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.0081 Score=73.73 Aligned_cols=143 Identities=16% Similarity=0.290 Sum_probs=79.2
Q ss_pred hhHHHhHHhHHH-HHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHH----------HHHHhhchhh
Q psy13233 88 IFLRELISNASD-ALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKA----------DLVKNLGTIA 156 (704)
Q Consensus 88 ifLRELIqNA~D-A~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~----------eL~~~LgtIa 156 (704)
..+.|.|.||+| |+. + ..--.|.|.++.+++.|+|.|||-||.-+ |++ |+++-
T Consensus 62 hl~~EildNsiDea~a-------------g-~~~~~I~V~i~~~d~sisV~DnGRGIPvd~h~~~~~~~~Evv--~t~Lh 125 (1177)
T 4gfh_A 62 KIFDEILVNAADNKVR-------------D-PSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMI--FGHLL 125 (1177)
T ss_dssp HHHHHHHHHHHHHHHH-------------C-TTCCEEEEEEETTTTEEEEEECSSCCCCSBCTTTCSBHHHHH--HHSSS
T ss_pred eEeeEEEEChHhHHhh-------------C-CCCCeEEEEEECCCCEEEEEecCCcccccccCCCCCEeeeee--ccccc
Confidence 356899999999 432 1 11125888888778999999999999743 222 33333
Q ss_pred ccChhhHHHhhhhhhcccccccccccccccceeeeeeecCEEEEEEEeC-CCCcE--EEEecC---CceEEEeCCCCCCC
Q psy13233 157 KSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNN-EDSQY--IWESDA---SSFSIVNDPRGDNL 230 (704)
Q Consensus 157 ~Sgt~~f~~~l~~~~~~~~d~~~~IGqFGIGFySaFmVAdkV~V~Sk~~-~d~~~--~Wes~g---g~f~I~~~~~~~~~ 230 (704)
.+|+ | .. ..-.-.-|..|||.--+=.++.++.|.+... ++..| .|+... +.-.|... ...
T Consensus 126 AGgK--F----d~-----~~ykvSGGLHGVG~svVNALS~~~~vev~~~r~Gk~y~q~f~~g~~~~~~~~i~~~---~~~ 191 (1177)
T 4gfh_A 126 TSSN--Y----DD-----DEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSY---KKG 191 (1177)
T ss_dssp EESC--C----CC-----SSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEEC---CSS
T ss_pred cccC--c----CC-----CCCeEeccCCChhhhHHhhcCCceEEEEEEEcCCEEEEEEEECCcccCCCCeeecC---CCC
Confidence 3332 2 10 1101234999999855555667766666543 22333 344221 11223322 233
Q ss_pred CCccEEEEEeccchh--ccCCHHHHHHHHHHh
Q psy13233 231 KRGTQISLELKEEAS--DFLEVNTLKDLIKKY 260 (704)
Q Consensus 231 ~~GT~I~L~Lked~~--e~l~~~~lk~likky 260 (704)
..||+|+......-. .-++.+.+....++.
T Consensus 192 ~tGT~V~F~PD~~iF~~~~~~~d~l~~~~r~~ 223 (1177)
T 4gfh_A 192 PSYTKVTFKPDLTRFGMKELDNDILGVMRRRV 223 (1177)
T ss_dssp CCCEEEEEEECHHHHTCSSCCHHHHHHHHHHH
T ss_pred CCceEEEEEeCHHhcCCcEeCHHHHHHHHHHH
Confidence 679999877543321 124556665555443
No 72
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=95.78 E-value=0.0096 Score=53.22 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=31.9
Q ss_pred hHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHH
Q psy13233 89 FLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADL 148 (704)
Q Consensus 89 fLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL 148 (704)
.|+||++||..+. ....+.|.+..+.+.-.|+|.|||.||+.+++
T Consensus 44 il~nll~Na~k~~---------------~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 44 CLKEAVTNVVKHS---------------QAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHHHHHHT---------------CCSEEEEEEEEETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHHHHhcC---------------CCcEEEEEEEEeCCEEEEEEEECCcCcCcccC
Confidence 5788999988762 12345566666655567999999999986543
No 73
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=95.60 E-value=0.011 Score=56.83 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=29.7
Q ss_pred hHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHH
Q psy13233 89 FLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADL 148 (704)
Q Consensus 89 fLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL 148 (704)
.|+||++||..+. ....+.|.+..+.+.-.|+|.|||.||+.+.+
T Consensus 134 il~nll~Na~k~~---------------~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 134 CLKEAVTNVVKHS---------------QAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp HHHHHHHHHHHHT---------------CCSEEEEEEEEETTEEEEEEEESSCCCC----
T ss_pred HHHHHHHHHHHhC---------------CCCEEEEEEEEeCCEEEEEEEECCcCCCCCCC
Confidence 5788888887663 12345566666655568999999999998765
No 74
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=95.21 E-value=0.0095 Score=52.41 Aligned_cols=43 Identities=28% Similarity=0.502 Sum_probs=31.7
Q ss_pred hHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHH
Q psy13233 89 FLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKAD 147 (704)
Q Consensus 89 fLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~e 147 (704)
.|+||++||..+. ....+.|.+..+.+ -.|+|.|||.||+.+.
T Consensus 43 il~nll~Na~k~~---------------~~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 43 VLREAVSNAVRHA---------------NATSLAINVSVEDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHTCT---------------TCCEEEEEEEEEEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHhC---------------CCCEEEEEEEeCCC-EEEEEEECCCCCCccc
Confidence 6788888887653 12346666666666 7899999999998765
No 75
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=94.91 E-value=0.013 Score=53.14 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=28.3
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCC----------CcEEEEEeCCCCCCHHHHHHh
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQE----------NKMLHIIDSGIGMTKADLVKN 151 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~----------~~~L~I~DNGiGMT~~eL~~~ 151 (704)
..|.+||.||..+... ....+.|.+..+.. .-.|+|.|||.||+.+++...
T Consensus 51 ~il~nLl~NAik~~~~-------------~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~l 111 (160)
T 1r62_A 51 QVLLNIVRNALQALGP-------------EGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTL 111 (160)
T ss_dssp HHHHHHHHHHHHHHGG-------------GCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC--------
T ss_pred HHHHHHHHHHHHHhhc-------------cCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHh
Confidence 4567899999988631 02234455444433 346899999999999887743
No 76
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=94.76 E-value=0.0082 Score=53.10 Aligned_cols=44 Identities=32% Similarity=0.496 Sum_probs=32.0
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHH
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKAD 147 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~e 147 (704)
..|+|||+||..+. ....+.|.+..+.+ -.|+|.|||.||+.+.
T Consensus 46 ~il~nll~NA~k~~---------------~~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 46 AVVREAVSNAVRHA---------------AASTLTVRVKVDDD-LCIEVTDNGRGMPDEF 89 (129)
T ss_dssp HHHHHHHHHCCCCS---------------SCCEEEEEEEESSE-EEEEEEECCCCCTTTT
T ss_pred HHHHHHHHHHHHhC---------------CCceEEEEEEEcCC-EEEEEecCCCCCCccc
Confidence 35788888888762 12345666666666 7899999999998654
No 77
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=93.93 E-value=0.026 Score=57.79 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=34.2
Q ss_pred hHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCCCcEEEEEeCCCCCCHHHHH
Q psy13233 89 FLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLV 149 (704)
Q Consensus 89 fLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~~~~L~I~DNGiGMT~~eL~ 149 (704)
.|.+||.||..|.. ....+.|.+..+.+.-.|+|.|||+||+.+++.
T Consensus 248 vl~nLl~NA~k~~~--------------~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~ 294 (349)
T 3a0r_A 248 VLINLVQNAIEATG--------------ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKE 294 (349)
T ss_dssp HHHHHHTHHHHTTC--------------TTCCEEEEEEEETTEEEEEEEEESCCCCGGGGT
T ss_pred HHHHHHHHHHHhcc--------------CCCEEEEEEEecCCEEEEEEEECCCCCChHHHh
Confidence 57888888888741 134556666665555679999999999988765
No 78
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=86.78 E-value=0.45 Score=47.50 Aligned_cols=31 Identities=10% Similarity=-0.048 Sum_probs=20.7
Q ss_pred CCceEEEEEcCCCcEEEEEeCCCC--CCHHHHH
Q psy13233 119 PELAIRIKADQENKMLHIIDSGIG--MTKADLV 149 (704)
Q Consensus 119 ~~l~I~I~~d~~~~~L~I~DNGiG--MT~~eL~ 149 (704)
..+.|.+..+.+.-.|+|.|+|.| +..+.+.
T Consensus 166 g~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~~~~ 198 (247)
T 4fpp_A 166 GVATVKGVAADGRFSIIADAKGPRARLRPEVLA 198 (247)
T ss_dssp CEEEEEEEEETTEEEEEEEEESTTCCCCHHHHH
T ss_pred CeEEEEEEEECCEEEEEEEEcCCCCCCCHHHHH
Confidence 445666666666668999999977 5554333
No 79
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=70.20 E-value=4.3 Score=43.62 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=30.4
Q ss_pred hhhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEcCC-CcEEEEEeCCCCCCHH
Q psy13233 87 EIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQE-NKMLHIIDSGIGMTKA 146 (704)
Q Consensus 87 ~ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d~~-~~~L~I~DNGiGMT~~ 146 (704)
...+.||+.||..+.- .+ .....+.|++..+.+ .-.|+|.|+|.|++..
T Consensus 299 ~l~v~El~~Nav~Ha~-------~~----~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~ 348 (399)
T 3ke6_A 299 VHAISEFVENAVEHGY-------AT----DVSKGIVVAAALAGDGNVRASVIDRGQWKDHR 348 (399)
T ss_dssp HHHHHHHHHHHHHHBC-------CS----CCTTCEEEEEEECTTSEEEEEEEESCBC----
T ss_pred HHHHHHHHHHHHHhcc-------cC----CCCceEEEEEEEcCCCEEEEEEEECCCCCCCC
Confidence 3689999999998731 00 123455666665533 3578999999999864
No 80
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=67.02 E-value=5.2 Score=39.15 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=37.2
Q ss_pred hhHHHhHHhHHHHHHHHHhhcccCCCccCCCCCceEEEEEc--CCCcEEEEEeCCCCCCHHHHH
Q psy13233 88 IFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKAD--QENKMLHIIDSGIGMTKADLV 149 (704)
Q Consensus 88 ifLRELIqNA~DA~~k~r~~~ltd~~~~~~~~~l~I~I~~d--~~~~~L~I~DNGiGMT~~eL~ 149 (704)
.-+-.||.||.+|++.. ..+ .....+.|.|..+ .+.-.+.|.|+|.|++.+.+.
T Consensus 108 ~~lgnLi~na~~Ai~~~-----~~~---~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~ 163 (192)
T 1ixm_A 108 QKLAKLMRKLFHLFDQA-----VSR---ESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFD 163 (192)
T ss_dssp HHHHHHHHHHHHHHHHH-----BCT---TSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC
T ss_pred HHHHHHHHHHHHHHHhh-----hcc---CCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHH
Confidence 34567999999998643 111 1234556666665 556789999999999987655
Done!