RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13233
(704 letters)
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 390 bits (1003), Expect = e-126
Identities = 234/539 (43%), Positives = 330/539 (61%), Gaps = 68/539 (12%)
Query: 63 ESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELA 122
E++ F+AE+N++M LIIN+ Y NKEIFLRELISNASDA DKIR SLTD SVL +P L
Sbjct: 3 ETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLC 62
Query: 123 IRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIG 182
IR+ D+ENK L + D+GIGMTKADLV NLGTIA+SGT F+ + ++ MIG
Sbjct: 63 IRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGGDMS-----MIG 117
Query: 183 QFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDA-SSFSIVNDPRGDNLKRGTQISLELK 241
QFGVGFYSA+LVAD+V VT+KNN D Y+WES A +F+I + P D +KRGT+I+L LK
Sbjct: 118 QFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAGGTFTITSTPESD-MKRGTRITLHLK 176
Query: 242 EEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEKKVEGDE 301
E+ ++LE LK+LIKK+S+FI + I + KT + + ED E+ DE+ E
Sbjct: 177 EDQMEYLEPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEEDTKKADED-----GE 231
Query: 302 EAKVEEAEDKEE--KPKTKKVDKTIWDWEQLNDNKPIWTRKPADISDEEYNEFYKAMTKD 359
E KVEE ++ +E K KTKKV + ++E N +KP+WTR P D++ EEY FYKA++ D
Sbjct: 232 EPKVEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHKPLWTRDPKDVTKEEYAAFYKAISND 291
Query: 360 RTDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSFNRYGTTTDNIKNELKKI---------- 409
DP HF EG++ F++++FVP+ P D F +NIK ++++
Sbjct: 292 WEDPAATKHFSVEGQLEFRSIMFVPKRAPFDMFEP-NKKRNNIKLYVRRVFIMDNCEDLC 350
Query: 410 --------------------------ELKLKKVIMRNIL-----LTIQI----------- 427
+ K+ KVI +NI+ + ++
Sbjct: 351 PDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFDEVAENKEDYKQFY 410
Query: 428 NVFSFSMKLGVIEDPANRSRLAKLLMFQSSSSTEP-TSLSDYVKRMKPKQDHIYYIAGAS 486
F ++KLG+ ED ANR +L +LL F S+ S E T+L DYV RMK Q IYYI G S
Sbjct: 411 EQFGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDS 470
Query: 487 RKEVESSPFVERLLRKGYEILYLVEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEK 545
+K++E+SPF+E+ R+G E+L++ E +DEY + + +FE KKF + KEG+ ++E+
Sbjct: 471 KKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEE 529
Score = 150 bits (380), Expect = 5e-38
Identities = 75/139 (53%), Positives = 103/139 (74%), Gaps = 3/139 (2%)
Query: 565 LYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIRKALD 624
LYVRRVFI D D+ P +L F++G+VDS+DLPLN+SRE LQQ+K+LKVIRK +++K L+
Sbjct: 335 LYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLE 394
Query: 625 MFKKL--DPETYKKFWAEYSTNMKLGVIEDPANRSRLAKLLMFQSSSSTEP-TSLSDYVK 681
MF ++ + E YK+F+ ++ N+KLG+ ED ANR +L +LL F S+ S E T+L DYV
Sbjct: 395 MFDEVAENKEDYKQFYEQFGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVT 454
Query: 682 RMKPKQDHIYYIAGASRKE 700
RMK Q IYYI G S+K+
Sbjct: 455 RMKAGQKSIYYITGDSKKK 473
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional.
Length = 613
Score = 339 bits (873), Expect = e-108
Identities = 135/335 (40%), Positives = 189/335 (56%), Gaps = 61/335 (18%)
Query: 63 ESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELA 122
E+ +F+AEV +++ L+I+SLY NKEIFLRELISNASDA+DK+R +LTD ++ + + +L
Sbjct: 4 ETGEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLK 63
Query: 123 IRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIG 182
IRI D+E + L I D+GIGMT+ ++++NLGTIAKSGT EFL ++ + L IG
Sbjct: 64 IRISFDKEARTLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQL---IG 120
Query: 183 QFGVGFYSAFLVADKVLVTTK--NNEDSQYIWESDAS-SFSIVNDPRGDNLKRGTQISLE 239
QFGVGFYSAF+VADKV V T+ WESD ++I + + RGT+I+L
Sbjct: 121 QFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGEGEYTIEEIEKEE---RGTEITLH 177
Query: 240 LKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEKKVEG 299
LKE+ +FL+ ++ +IKKYS FI PI +
Sbjct: 178 LKEDEDEFLDEWRIRSIIKKYSDFIPVPIKL----------------------------- 208
Query: 300 DEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLNDNKPIWTRKPADISDEEYNEFYKAMTKD 359
+KEE E +N +WTR ++I+DEEY EFYK + D
Sbjct: 209 ----------EKEE-------------EETINSASALWTRSKSEITDEEYKEFYKHLAHD 245
Query: 360 RTDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSFNR 394
DPL IH EG + +L++P+ P D FNR
Sbjct: 246 FDDPLFWIHNNVEGPFEYTGLLYIPKKAPFDLFNR 280
Score = 194 bits (496), Expect = 1e-53
Identities = 74/142 (52%), Positives = 102/142 (71%), Gaps = 3/142 (2%)
Query: 561 RGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIR 620
GL LYV+RVFI D+ ++LP+YL F++G++DS+DLPLNVSRE LQ+ +++K IRK + +
Sbjct: 284 GGLKLYVKRVFIMDDAEELLPEYLRFVKGVIDSEDLPLNVSREILQEDRVVKKIRKAITK 343
Query: 621 KALDMFKKL---DPETYKKFWAEYSTNMKLGVIEDPANRSRLAKLLMFQSSSSTEPTSLS 677
K LD +KL D E Y+KFW E+ +K G+ ED ANR +LAKLL F S+ + SL+
Sbjct: 344 KVLDELEKLAKNDREKYEKFWKEFGPVLKEGLYEDFANREKLAKLLRFASTHEGKYVSLA 403
Query: 678 DYVKRMKPKQDHIYYIAGASRK 699
+YV+RMK Q IYYI G SR+
Sbjct: 404 EYVERMKEGQKKIYYITGDSRE 425
Score = 135 bits (343), Expect = 2e-33
Identities = 51/121 (42%), Positives = 77/121 (63%)
Query: 430 FSFSMKLGVIEDPANRSRLAKLLMFQSSSSTEPTSLSDYVKRMKPKQDHIYYIAGASRKE 489
F +K G+ ED ANR +LAKLL F S+ + SL++YV+RMK Q IYYI G SR+
Sbjct: 367 FGPVLKEGLYEDFANREKLAKLLRFASTHEGKYVSLAEYVERMKEGQKKIYYITGDSREA 426
Query: 490 VESSPFVERLLRKGYEILYLVEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEKMEAL 549
++SP +E +KG E+L L + +DE+ +S L EF+GK F+++A+ L + E+ +
Sbjct: 427 AKNSPHLELFKKKGIEVLLLTDPIDEFWISYLEEFDGKPFKSVARGDLDLGKEDEEEKEE 486
Query: 550 K 550
K
Sbjct: 487 K 487
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational
modification, protein turnover, chaperones].
Length = 623
Score = 316 bits (812), Expect = 8e-99
Identities = 143/338 (42%), Positives = 203/338 (60%), Gaps = 52/338 (15%)
Query: 59 RKKAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDAN 118
+ E+ F+AEV +++ L+I+SLY NKEIFLRELISNASDA+DK+R +L+D + + +
Sbjct: 1 MMEQETRGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGD 60
Query: 119 PELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLN 178
+L IRI D++NK L I D+GIGMTK ++++NLGTIAKSGT EFL +S+ + +
Sbjct: 61 SDLRIRISFDKDNKTLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQ----KDS 116
Query: 179 DMIGQFGVGFYSAFLVADKV-LVTTKNNEDSQYIWESDAS-SFSIVNDPRGDNLKRGTQI 236
D+IGQFGVGFYSAF+VADKV ++T ED Y WESD +++ + + +RGT+I
Sbjct: 117 DLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDGEGEYTVEDIDKEP--RRGTEI 174
Query: 237 SLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEKK 296
+L LKEE +FLE L++++KKYS I +PIYI + EK+
Sbjct: 175 TLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIYI---------------------EGEKE 213
Query: 297 VEGDEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLNDNKPIWTRKPADISDEEYNEFYKAM 356
+ + +WE +N K +WTR ++I+DEEY EFYK +
Sbjct: 214 KDEEVI-----------------------EWETINKAKALWTRNKSEITDEEYKEFYKHL 250
Query: 357 TKDRTDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSFNR 394
D DPL IH EG + + A+LF+P P D F R
Sbjct: 251 AHDFDDPLLWIHNKVEGRLEYTALLFIPSKAPFDLFRR 288
Score = 174 bits (443), Expect = 2e-46
Identities = 75/150 (50%), Positives = 100/150 (66%), Gaps = 5/150 (3%)
Query: 554 LYTKSLLRGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKV 613
L+ + RGL LYV RVFI D+ D+LP YL F++G++DS+DLPLNVSRE LQQ+++L
Sbjct: 285 LFRRDRKRGLKLYVNRVFIMDDAEDLLPNYLRFVRGVIDSEDLPLNVSREILQQNRILAA 344
Query: 614 IRKKLIRKALDMFKKL---DPETYKKFWAEYSTNMKLGVIEDPANRSRLAKLLMFQSSS- 669
IRK L +K L M +KL DPE Y+KFW ++ +K G+ ED N+ +L LL F+S+S
Sbjct: 345 IRKALTKKVLSMLEKLAKDDPEKYRKFWKQFGLVLKEGLYEDFENKEKLLDLLRFRSTSD 404
Query: 670 -STEPTSLSDYVKRMKPKQDHIYYIAGASR 698
+ SL +YV RMK Q IYYI G S
Sbjct: 405 SGEKTVSLEEYVSRMKEGQKQIYYITGESY 434
Score = 111 bits (281), Expect = 1e-25
Identities = 51/121 (42%), Positives = 72/121 (59%), Gaps = 2/121 (1%)
Query: 430 FSFSMKLGVIEDPANRSRLAKLLMFQSSS--STEPTSLSDYVKRMKPKQDHIYYIAGASR 487
F +K G+ ED N+ +L LL F+S+S + SL +YV RMK Q IYYI G S
Sbjct: 375 FGLVLKEGLYEDFENKEKLLDLLRFRSTSDSGEKTVSLEEYVSRMKEGQKQIYYITGESY 434
Query: 488 KEVESSPFVERLLRKGYEILYLVEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEKME 547
+ + SP +E KG E+L L + +DE+ L+ LPEFEGK F++I K L + +E+ E
Sbjct: 435 QAAKGSPHLELFKAKGIEVLLLTDRIDEFMLTMLPEFEGKPFKSITKGDLDLELLEEEDE 494
Query: 548 A 548
A
Sbjct: 495 A 495
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 305 bits (782), Expect = 2e-95
Identities = 152/371 (40%), Positives = 217/371 (58%), Gaps = 56/371 (15%)
Query: 246 DFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAP--KDEEKKVEGDEEA 303
++LE +K+L+KK+S+FIN+PIY+W K ++ + P E+ EEE K+EE+K EE
Sbjct: 1 EYLEERRIKELVKKHSEFINYPIYLWVEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEE 60
Query: 304 KVEEAEDKEEKPKTKKVDKTIWDWEQLNDNKPIWTRKPADISDEEYNEFYKAMTKDRTDP 363
EE E +E+K KTKKV +T +WE LN KPIWTR P D++ EEY FYK++T D DP
Sbjct: 61 VDEEEEKEEKKKKTKKVKETTTEWELLNKTKPIWTRNPKDVTKEEYAAFYKSLTNDWEDP 120
Query: 364 LTKIHFVAEGEVTFKAVLFVPQTQPQDSFNRYGTTTDNIK-------------------- 403
L HF EG++ F+A+LFVP+ P D F Y +NIK
Sbjct: 121 LAVKHFSVEGQLEFRAILFVPKRAPFDLFESY-KKKNNIKLYVRRVFIMDDCEDLIPEYL 179
Query: 404 NELKKI----------------ELKLKKVIMRNIL-----LTIQI-----------NVFS 431
+ +K + + K+ KVI +N++ + +I FS
Sbjct: 180 SFVKGVVDSEDLPLNISREMLQQNKILKVIRKNLVKKCLEMFNEIAEDKEQYKKFYEEFS 239
Query: 432 FSMKLGVIEDPANRSRLAKLLMFQSSSS-TEPTSLSDYVKRMKPKQDHIYYIAGASRKEV 490
++KLG+ ED ANR++LAKLL F+S+ S E TSL DYV RMK Q IYYI G S+K+V
Sbjct: 240 KNIKLGIHEDAANRAKLAKLLRFESTKSGDELTSLDDYVTRMKEGQKDIYYITGESKKQV 299
Query: 491 ESSPFVERLLRKGYEILYLVEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEKMEALK 550
E SPF+ERL +KGYE+LY+ + +DEY + L EFEGKK N+ KEGL + ++E+ + +
Sbjct: 300 EKSPFLERLKKKGYEVLYMTDPIDEYAMQQLKEFEGKKLVNVTKEGLKLEESEEEKKKRE 359
Query: 551 TLQLYTKSLLR 561
L+ + L +
Sbjct: 360 ELKKEFEELCK 370
Score = 203 bits (518), Expect = 2e-57
Identities = 85/139 (61%), Positives = 111/139 (79%), Gaps = 3/139 (2%)
Query: 565 LYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIRKALD 624
LYVRRVFI D+ D++P+YLSF++G+VDS+DLPLN+SRE LQQ+K+LKVIRK L++K L+
Sbjct: 160 LYVRRVFIMDDCEDLIPEYLSFVKGVVDSEDLPLNISREMLQQNKILKVIRKNLVKKCLE 219
Query: 625 MFKKL--DPETYKKFWAEYSTNMKLGVIEDPANRSRLAKLLMFQSSSS-TEPTSLSDYVK 681
MF ++ D E YKKF+ E+S N+KLG+ ED ANR++LAKLL F+S+ S E TSL DYV
Sbjct: 220 MFNEIAEDKEQYKKFYEEFSKNIKLGIHEDAANRAKLAKLLRFESTKSGDELTSLDDYVT 279
Query: 682 RMKPKQDHIYYIAGASRKE 700
RMK Q IYYI G S+K+
Sbjct: 280 RMKEGQKDIYYITGESKKQ 298
>gnl|CDD|185466 PTZ00130, PTZ00130, heat shock protein 90; Provisional.
Length = 814
Score = 301 bits (771), Expect = 5e-91
Identities = 182/411 (44%), Positives = 264/411 (64%), Gaps = 29/411 (7%)
Query: 12 EDDIIEQTVDVNIGESREGSRTDADAPKVEKERIQLDGLNPAQLEELRKKA---ESYKFE 68
+ + + Q +V ES EG + + EKE ++ D N ++E+ K E ++++
Sbjct: 17 QPNWVPQLCNVLC-ESDEGKSEEKE----EKEEVKKDRDNIPEIEDGEKPTSGIEQHQYQ 71
Query: 69 AEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKAD 128
EV R+M +I+NSLY KE+FLRELISNA+DAL+KIR LSL+D SVL +L IRI A+
Sbjct: 72 TEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISAN 131
Query: 129 QENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGF 188
+E +L I D+GIGMTK DL+ NLGTIAKSGT+ FL +S D++ +IGQFGVGF
Sbjct: 132 KEKNILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGG---DMS-LIGQFGVGF 187
Query: 189 YSAFLVADKVLVTTKNNEDSQYIWESDA-SSFSIVNDPRGDNLKRGTQISLELKEEASDF 247
YSAFLVADKV+V TKNN D QYIWES A + F+I DPRG LKRGT+ISL LKE+A++
Sbjct: 188 YSAFLVADKVIVYTKNNNDEQYIWESTADAKFTIYKDPRGSTLKRGTRISLHLKEDATNL 247
Query: 248 LEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEKKVEGDEEAKVEE 307
+ L DLI KYSQFI +PIY+ + + +E + D+ +E D + KVEE
Sbjct: 248 MNDKKLVDLISKYSQFIQYPIYLL-HENVYTEEVLADIAKEMENDPNY-----DSVKVEE 301
Query: 308 AEDKEEKPKTKKVDKTIWDWEQLNDNKPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKI 367
+D + KT+ V+K + W+ +N+ KPIW R P +++DE+Y +F+ ++ +PL I
Sbjct: 302 TDDPNK--KTRTVEKKVKKWKLMNEQKPIWLRPPKELTDEDYKKFFSVLSGFNDEPLYHI 359
Query: 368 HFVAEGEVTFKAVLFVPQTQPQDSFNRYGTTTDNIKNELKKIELKLKKVIM 418
HF AEGE+ FK ++++P P + D++ + I+L +++V++
Sbjct: 360 HFFAEGEIEFKCLIYIPSRAP--------SINDHLFTKQNSIKLYVRRVLV 402
Score = 131 bits (330), Expect = 1e-31
Identities = 72/177 (40%), Positives = 101/177 (57%), Gaps = 34/177 (19%)
Query: 553 QLYTKSLLRGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLK 612
L+TK + LYVRRV + DEF + LP+Y+SF++G+VDSDDLPLNVSRE LQQ+K+LK
Sbjct: 385 HLFTKQ--NSIKLYVRRVLVADEFVEFLPRYMSFVKGVVDSDDLPLNVSREQLQQNKILK 442
Query: 613 VIRKKLIRKALDMFKKL--------------------------------DPETYKKFWAE 640
+ K+++RK LD F+ L +P TYK + E
Sbjct: 443 AVSKRIVRKILDTFRTLYKEGKKNKETLRAELAKETDEEKKKEIQKKINEPSTYKLIYKE 502
Query: 641 YSTNMKLGVIEDPANRSRLAKLLMFQSSSSTEPTSLSDYVKRMKPKQDHIYYIAGAS 697
Y +K G ED NR+++ KLL+F++ + SL Y++ MKP Q IYY +G S
Sbjct: 503 YRKYLKTGCYEDDINRNKIVKLLLFKTMLHPKSISLDTYIENMKPDQKFIYYASGDS 559
Score = 77.8 bits (191), Expect = 9e-15
Identities = 38/127 (29%), Positives = 76/127 (59%)
Query: 434 MKLGVIEDPANRSRLAKLLMFQSSSSTEPTSLSDYVKRMKPKQDHIYYIAGASRKEVESS 493
+K G ED NR+++ KLL+F++ + SL Y++ MKP Q IYY +G S + +
Sbjct: 507 LKTGCYEDDINRNKIVKLLLFKTMLHPKSISLDTYIENMKPDQKFIYYASGDSYEYLSKI 566
Query: 494 PFVERLLRKGYEILYLVEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEKMEALKTLQ 553
P ++ +K ++++L E+VDE + + E++GKKF++I K ++ +++ + + ++
Sbjct: 567 PQLQIFKKKNIDVVFLTESVDESCVQRVQEYDGKKFKSIQKGEITFELTEDEKKKEEKVK 626
Query: 554 LYTKSLL 560
K+L+
Sbjct: 627 KMYKALI 633
>gnl|CDD|237603 PRK14083, PRK14083, HSP90 family protein; Provisional.
Length = 601
Score = 103 bits (260), Expect = 4e-23
Identities = 57/200 (28%), Positives = 100/200 (50%), Gaps = 20/200 (10%)
Query: 74 MMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKM 133
++ L+ LY + +++REL+ NA DA I D A + I +
Sbjct: 12 VIDLLSRHLYSSPRVYVRELLQNAVDA---ITARRALDP---TAPGRIRIELTDA-GGGT 64
Query: 134 LHIIDSGIGMTKADLVKNLGTIAKSGT-AEFLSQMSDKENIKHDLNDMIGQFGVGFYSAF 192
L + D+GIG+T+ ++ + L TI +S E L ND +GQFG+G S F
Sbjct: 65 LIVEDNGIGLTEEEVHEFLATIGRSSKRDENLGF---------ARNDFLGQFGIGLLSCF 115
Query: 193 LVADKVLVTTKNNEDSQYI-WESDAS-SFSIVNDPRGDNLKRGTQISLELKEEASDFLEV 250
LVAD+++V +++ +D + W A ++S+ + + GT + L + +A ++LE
Sbjct: 116 LVADEIVVVSRSAKDGPAVEWRGKADGTYSVRKLE-TERAEPGTTVYLRPRPDAEEWLER 174
Query: 251 NTLKDLIKKYSQFINFPIYI 270
T+++L KKY + PI +
Sbjct: 175 ETVEELAKKYGSLLPVPIRV 194
Score = 46.1 bits (110), Expect = 5e-05
Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 7/121 (5%)
Query: 566 YVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKL---IRKA 622
Y++R+ +++E ++LP + F++ +V++D+L SRE L + L +R++L IRK
Sbjct: 269 YLKRMLLSEEAENLLPDWAFFVRCVVNTDELRPTASREALYEDDALAAVREELGEAIRKW 328
Query: 623 LDMFKKLDPETYKKFWAEYSTNMK-LGVIEDPANRSRLAKLLMFQSSSSTEPTSLSDYVK 681
L DPE ++ A + +K L +D R + L F+++ +L++ +
Sbjct: 329 LIGLATTDPERLRRLLAVHHLGVKALASHDDELLRL-ILPWLPFETTDGRM--TLAEIRR 385
Query: 682 R 682
R
Sbjct: 386 R 386
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and
HSP90-like ATPase. This family represents the
structurally related ATPase domains of histidine kinase,
DNA gyrase B and HSP90.
Length = 111
Score = 46.5 bits (111), Expect = 2e-06
Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 26/114 (22%)
Query: 85 NKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMT 144
E LR+++SN D K A E+ + ++ D + + D+GIG+
Sbjct: 1 GDEDRLRQVLSNLLDNAIKHA----------PAGGEIEVTLERDGGRLRITVEDNGIGIP 50
Query: 145 KADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKV 198
DL K ++ ++ + +G G+G + +
Sbjct: 51 PEDLPKIFEPFFRTDSS----------------SRKVGGTGLGLSIVRKLVELH 88
>gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family
includes several ATP-binding proteins for example:
histidine kinase, DNA gyrase B, topoisomerases, heat
shock protein HSP90, phytochrome-like ATPases and DNA
mismatch repair proteins.
Length = 103
Score = 44.6 bits (106), Expect = 9e-06
Identities = 16/124 (12%), Positives = 39/124 (31%), Gaps = 34/124 (27%)
Query: 87 EIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKA 146
+ L L+SNA + + I ++ D ++ + + D+G G+ +
Sbjct: 2 QQVLLNLLSNAIKHTPE-------------GGGRITISVERDGDHLEIRVEDNGPGIPEE 48
Query: 147 DLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVAD----KVLVTT 202
DL + + + G G+G + + ++ V +
Sbjct: 49 DLERIFERFSDGSR-----------------SRKGGGTGLGLSIVKKLVELHGGRIEVES 91
Query: 203 KNNE 206
+
Sbjct: 92 EPGG 95
>gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases. Histidine
kinase-, DNA gyrase B-, phytochrome-like ATPases.
Length = 111
Score = 41.5 bits (98), Expect = 1e-04
Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 26/114 (22%)
Query: 85 NKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMT 144
LR+++SN D K + + ++ D ++ + + D+G G+
Sbjct: 1 GDPDRLRQVLSNLLDNAIKYT----------PEGGRITVTLERDGDHVEITVEDNGPGIP 50
Query: 145 KADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKV 198
DL K F + IG G+G + +
Sbjct: 51 PEDLEKIFE--------PFFRT--------DKRSRKIGGTGLGLSIVKKLVELH 88
>gnl|CDD|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and
HSP90-like ATPase. This family represents,
additionally, the structurally related ATPase domains of
histidine kinase, DNA gyrase B and HSP90.
Length = 134
Score = 41.9 bits (99), Expect = 1e-04
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 31/137 (22%)
Query: 90 LRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLV 149
+ ELI N+ DA DA+ + I I D+ + I D+G GM+ +L
Sbjct: 7 IAELIDNSIDA----------DATNVK------ISIDPDRGEDGISIEDNGGGMSYEELR 50
Query: 150 KNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVG-FYSAFLVADKVLVTTKNNEDS 208
L + + S KE + +G+ G+G ++ + K+ VT+K +S
Sbjct: 51 NAL-KLGR----------SSKE--GERDSTTLGRKGIGMKLASLSLGRKLTVTSKKEGES 97
Query: 209 QYI-WESDASSFSIVND 224
+ + D D
Sbjct: 98 STLTLDLDDIDKEGEWD 114
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 34.8 bits (81), Expect = 0.17
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
Query: 242 EEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEKKVEGDE 301
E D L+ L LIK+Y +F F I + E +E E + +++EK +
Sbjct: 133 EIERDHLKKKHLPKLIKQYEKFG-FGILKIDFEIDDSKEELEKFEAQKEEEDEKLAKEAL 191
Query: 302 EAKVEEAEDKEEKPKTKKVDKTIWDWEQLNDNKPIWTRKPADISDEEYN 350
EA + +K+++ K + + D + I +I++EE
Sbjct: 192 EAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEEI--TPMKEINEEERR 238
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 33.3 bits (77), Expect = 0.36
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 574 DEFTDMLPKYLSFIQGIVDSDDLP---LNVSRETLQQHKLLKVIRKKLIRKALDMFKKLD 630
+E +++ Y GIVD + +P L R L+ LKV + LI++AL ++
Sbjct: 13 EELKELIKSYPVV--GIVDLEGIPARQLQEIRRKLRGKAELKVSKNTLIKRAL---EEAG 67
Query: 631 PETYKKFWAEYST 643
E +K +Y
Sbjct: 68 EEDLEKL-EDYLE 79
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 32.8 bits (75), Expect = 0.47
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 272 SSKTIQVDEPIEDLEEEAPKDEEKKVEGDEEAKVEEAEDKEEKPKTKKVDKT 323
+ E +++ E+EA E+K+ +GD E + EE+E++ E+ + D+
Sbjct: 55 DDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDEN 106
Score = 28.9 bits (65), Expect = 7.1
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 274 KTIQVDEPIEDLEEEAPKDEEKKVEGDEEAKVEEAED--KEEKPKTKKVDKTI--WDWE 328
K E ED + +DEE + E +EE + E+ + E+ V+K I W+
Sbjct: 70 KEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPSWK 128
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 31.9 bits (72), Expect = 1.3
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 284 DLEEEAPKDEEKKVEGDEEAKVEEAEDKEEKP 315
D EEE ++EE++ E +EE + EE E++ E+P
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENEEP 893
>gnl|CDD|218889 pfam06088, TLP-20, Nucleopolyhedrovirus telokin-like protein-20
(TLP20). This family consists of several
Nucleopolyhedrovirus telokin-like protein-20 (TLP20)
sequences. The function of this family is unknown but
TLP20 is known to shares some antigenic similarities to
the smooth muscle protein telokin although the amino
acid sequence shows no homologies to telokin.
Length = 162
Score = 30.4 bits (69), Expect = 1.6
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 243 EASDFLEV---NTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEKKVEG 299
S + V N ++KK I F I W+SK V P+ E DE+++
Sbjct: 78 SNSRRINVILFNIKPTVLKK-GGCI-FKIVYWNSK-KFVSAPVPHHSSEDENDEDEEDNA 134
Query: 300 D-EEAKVEEAEDKEEKPKTKKVDK 322
D + + PK +K+D+
Sbjct: 135 DRAGIESGIDDSAPPSPKKQKLDE 158
>gnl|CDD|236740 PRK10712, PRK10712, PTS system fructose-specific transporter
subunits IIBC; Provisional.
Length = 563
Score = 31.6 bits (72), Expect = 1.6
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 132 KMLHIIDSGIGMTKADLVKN-LGTIAKSGTAEFLSQMSDKE 171
K L IID+ +G +A + K LG A E + +D E
Sbjct: 2 KTLLIIDANLGQARAYMAKTLLGAAAAKAGLEIIDNPNDAE 42
>gnl|CDD|148359 pfam06711, DUF1198, Protein of unknown function (DUF1198). This
family consists of several bacterial proteins of around
150 residues in length which are specific to Escherichia
coli, Salmonella species and Yersinia pestis. The
function of this family is unknown.
Length = 148
Score = 30.2 bits (68), Expect = 1.8
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 590 IVDSDDLPLNVSRETLQQHKLLKVIRKKLIRKALDMFKKLDPETY 634
IVD+ D L + R L + +L + + R AL F++LDP+ +
Sbjct: 83 IVDASDENLQLWRRLLIKARLAAPLTAEQTRLALGFFRELDPDAF 127
>gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional.
Length = 391
Score = 31.4 bits (71), Expect = 1.8
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 11/155 (7%)
Query: 123 IRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIG 182
IR ++ +KM ++I GIG D KN+ AK E + + I +L + I
Sbjct: 22 IRELFERASKMENVISLGIGEPDFDTPKNIKEAAKRALDEGWTHYTPNAGIP-ELREAIA 80
Query: 183 QFGVGFYSAFLVADKVLVTTKNNEDSQYIWES--DASSFSIVNDP------RGDNLKRGT 234
++ FY + D V+VT E + +ES + I+ DP +
Sbjct: 81 EYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIAEAK 140
Query: 235 QISLELKEEASDFLEVNTLKDLIKKYSQFI--NFP 267
I + L+EE + + L +LI K ++ I N+P
Sbjct: 141 PIRIPLREENEFQPDPDELLELITKRTRMIVINYP 175
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 30.9 bits (70), Expect = 2.0
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 281 PIEDLEEEAPKDEEKKVEGDEEAKVEEAEDKEEKPKTKKVDKTI 324
+ +E+ + E ++ + EA+ K+E + K V K I
Sbjct: 71 DQKPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKI 114
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 31.1 bits (71), Expect = 2.2
Identities = 16/45 (35%), Positives = 30/45 (66%)
Query: 279 DEPIEDLEEEAPKDEEKKVEGDEEAKVEEAEDKEEKPKTKKVDKT 323
D+ +E+ EE+ +E++ E DE++ E+ E++EE+ K KK K+
Sbjct: 339 DDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKS 383
Score = 29.2 bits (66), Expect = 8.3
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 279 DEPIEDLEEEAPKDEEKKVEGDEEAKVEEAEDKEEKPKTKKVDKT 323
D E+ + + +EE + + D + + +E E++EEK K KK
Sbjct: 341 DLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAE 385
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 30.7 bits (70), Expect = 3.3
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 231 KRGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAP 290
++GT ISL EA D L L+ K ++I P+ ++ I P + +AP
Sbjct: 341 RKGTAISLV---EAHDHL-------LLGKIERYIEEPL---KARVIDELRP----KTKAP 383
Query: 291 KDEE-KKVEGDEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLNDNKPIWTR-KPADISDE 347
+++ K AK E ++KE++ K D K I R KP+ S+E
Sbjct: 384 SEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHR--------DTKNIGKRRKPSGTSEE 434
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 30.8 bits (70), Expect = 3.3
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 3/97 (3%)
Query: 276 IQVDEPIEDLEEEAPKDEEKKVEGDEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLNDNKP 335
++ D+ + ++ D EA+++E E+ E + + + W +
Sbjct: 54 LKDTGGKPDVPPSKEFLDLEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSF 113
Query: 336 IWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAE 372
+ E + R K+ FVA
Sbjct: 114 L---DENLEELSELSNLDIDFKYLRGAEGLKLGFVAG 147
>gnl|CDD|223715 COG0642, BaeS, Signal transduction histidine kinase [Signal
transduction mechanisms].
Length = 336
Score = 30.1 bits (67), Expect = 3.5
Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 16/119 (13%)
Query: 31 SRTDADAP-KVEKERIQLDGLNPAQLEELRKKAESYKFEAEVNRMMKLIINSLYRNKEIF 89
SR +A K+ E + L L + L A+ E V+ +
Sbjct: 173 SRLEAGTKLKLLLELVDLAELLEEVVRLLAPLAQEKGIELAVDLPELPYVLGDPERLRQV 232
Query: 90 LRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADL 148
L L+SNA E+ I ++ D E + + D+G G+ + +L
Sbjct: 233 LVNLLSNAIKYTPG---------------GEITISVRQDDEQVTISVEDTGPGIPEEEL 276
>gnl|CDD|217255 pfam02862, DDHD, DDHD domain. The DDHD domain is 180 residues long
and contains four conserved residues that may form a
metal binding site. The domain is named after these four
residues. This pattern of conservation of metal binding
residues is often seen in phosphoesterase domains. This
domain is found in retinal degeneration B proteins, as
well as a family of probable phospholipases. It has been
shown that this domain is found in a longer C terminal
region that binds to PYK2 tyrosine kinase. These
proteins have been called N-terminal domain-interacting
receptor (Nir1, Nir2 and Nir3). This suggests that this
region is involved in functionally important
interactions in other members of this family.
Length = 219
Score = 30.0 bits (68), Expect = 3.6
Identities = 19/124 (15%), Positives = 34/124 (27%), Gaps = 11/124 (8%)
Query: 213 ESDASSFSIVNDPRGDNLKRGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWS 272
+ + ++ V P K G LEL E ++ + + N
Sbjct: 68 DPEYANLKPVLIPHAKKSKLGA---LELLESLTNIGKAVKQS-VGSTTWGAGNEIASGLR 123
Query: 273 SKTIQVDEPIEDLEEEAPKDEEKKVEGDEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLND 332
+ + E + + E E E + KK ++ LN
Sbjct: 124 NSSASRSSTDEKSADSSTISRLSP-------SNVELETSEFTREEKKSERAELRLGALNG 176
Query: 333 NKPI 336
N I
Sbjct: 177 NGRI 180
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 29.3 bits (66), Expect = 4.2
Identities = 10/39 (25%), Positives = 25/39 (64%)
Query: 286 EEEAPKDEEKKVEGDEEAKVEEAEDKEEKPKTKKVDKTI 324
EE+ K++++ + EE + +A+ ++++ K KKV + +
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKL 130
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 29.3 bits (66), Expect = 5.4
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 279 DEPIEDLEEEAPKDEEKKVE--GDEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLNDNK 334
D E++EE+ K+ E K E G EE E +KEE + + + E ++N
Sbjct: 7 DAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENN 64
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 29.5 bits (67), Expect = 7.6
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 247 FLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEKKVEGDEEAKVE 306
+LEV +K L + Q P Y + + + +E LE+E + + + V E K +
Sbjct: 349 YLEVALVK-LCE---QAAASPEYDTELEVLL--QRVEQLEQELKQLKAQPVGVAPEQKEK 402
Query: 307 EAEDKEEKPKTKKVDK 322
+ E K+ K K KV +
Sbjct: 403 KKEKKKNKKKKYKVPR 418
>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha
subunit. The alpha-subunit of the TRAP complex (TRAP
alpha) is a single-spanning membrane protein of the
endoplasmic reticulum (ER) which is found in proximity
of nascent polypeptide chains translocating across the
membrane.
Length = 281
Score = 29.0 bits (65), Expect = 7.8
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 272 SSKTIQVDEPIEDLEEEAPKDEEKKVEGDEEAKVEEAEDKEEKPK 316
S++ + DE ED + +++E VE DE EE ED+E + K
Sbjct: 30 SAQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEVK 74
>gnl|CDD|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA
replication, recombination, and repair].
Length = 638
Score = 29.2 bits (66), Expect = 7.9
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 23/62 (37%)
Query: 90 LRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQEN---KMLHIIDSGIGMTKA 146
++EL+ N+ LDA A RI + E K++ + D+G G+ K
Sbjct: 28 VKELVENS-----------------LDAG---ATRIDIEVEGGGLKLIRVRDNGSGIDKE 67
Query: 147 DL 148
DL
Sbjct: 68 DL 69
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 29.5 bits (67), Expect = 7.9
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 286 EEEAPKDEEKKVEGDEEAKVEEAEDKEEKPKTKKVDKTIWDW 327
EEE +++EKK E EE + E E+KEE+ + KK T++D+
Sbjct: 441 EEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQATLFDF 482
>gnl|CDD|219995 pfam08737, Rgp1, Rgp1. Rgp1 forms heterodimer with Ric1
(pfam07064) which associates with Golgi membranes and
functions as a guanyl-nucleotide exchange factor.
Length = 402
Score = 28.9 bits (65), Expect = 9.2
Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 10/75 (13%)
Query: 261 SQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEKKVEGDEEAKVEEAEDKEE---KPKT 317
+ + PI + ++ DL + + D+EA+VE ++ P
Sbjct: 151 VKSLRVPIRVLPYVNAGGEQLQHDLMKPI-------IILDDEARVEVKSEESRAPSSPFL 203
Query: 318 KKVDKTIWDWEQLND 332
++ ++ L +
Sbjct: 204 ERHAQSKKSSSTLEE 218
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.131 0.360
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 35,688,699
Number of extensions: 3595585
Number of successful extensions: 5022
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4729
Number of HSP's successfully gapped: 184
Length of query: 704
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 600
Effective length of database: 6,324,786
Effective search space: 3794871600
Effective search space used: 3794871600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.0 bits)