RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13233
(704 letters)
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 592 bits (1527), Expect = 0.0
Identities = 225/543 (41%), Positives = 332/543 (61%), Gaps = 61/543 (11%)
Query: 62 AESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPEL 121
+E+++F+AE+ ++M LIIN++Y NKEIFLRELISNASDALDKIR SL+D L+ P+L
Sbjct: 3 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDL 62
Query: 122 AIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMI 181
IRI E K+L I DSGIGMTKA+L+ NLGTIAKSGT F+ +S ++ MI
Sbjct: 63 FIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADV-----SMI 117
Query: 182 GQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDA-SSFSIVNDPRGDNLKRGTQISLEL 240
GQFGVGFYS FLVAD+V V +K+N+D QYIWES+A SF++ D + + RGT + L L
Sbjct: 118 GQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFL 177
Query: 241 KEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEKKVEGD 300
K++ ++LE +K++IK++S+F+ +PI + +K ++ + PI + E++ + ++++ + +
Sbjct: 178 KDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEEKKDEEKKDEEKKDE 237
Query: 301 EEAK---VEEAEDKEEKPKTKKVDKTIWDWEQLNDNKPIWTRKPADISDEEYNEFYKAMT 357
++ K E E++E+KPKTKKV + + + E+LN KP+WTR P+DI+ EEYN FYK+++
Sbjct: 238 DDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEELNKTKPLWTRNPSDITQEEYNAFYKSIS 297
Query: 358 KDRTDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSFNRYGTTTD----------------- 400
D DPL HF EG++ F+A+LF+P+ P D F +
Sbjct: 298 NDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFITDEAEDL 357
Query: 401 -------------------NIKNEL---KKIELKLKKVIMRNILLTIQ------------ 426
N+ E+ KI ++K I++ ++
Sbjct: 358 IPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQFEKF 417
Query: 427 INVFSFSMKLGVIEDPANRSRLAKLLMFQSS-SSTEPTSLSDYVKRMKPKQDHIYYIAGA 485
+ FS ++KLGV ED NR+ LAKLL + S+ S E TSL+DYV RM Q +IYYI G
Sbjct: 418 YSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGE 477
Query: 486 SRKEVESSPFVERLLRKGYEILYLVEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEK 545
S K VE SPF++ L K +E+L+L + +DEY + L EFEGK +I K+ ++EK
Sbjct: 478 SLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKDFELEETDEEK 537
Query: 546 MEA 548
E
Sbjct: 538 AER 540
Score = 203 bits (519), Expect = 1e-56
Identities = 77/143 (53%), Positives = 108/143 (75%), Gaps = 3/143 (2%)
Query: 561 RGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIR 620
+ LYVRRVFITDE D++P++LSF++G+VDS+DLPLN+SRE LQQ+K++KVIRK +++
Sbjct: 339 NNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVK 398
Query: 621 KALDMFKKL--DPETYKKFWAEYSTNMKLGVIEDPANRSRLAKLLMFQSS-SSTEPTSLS 677
K ++ F ++ D E ++KF++ +S N+KLGV ED NR+ LAKLL + S+ S E TSL+
Sbjct: 399 KLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLT 458
Query: 678 DYVKRMKPKQDHIYYIAGASRKE 700
DYV RM Q +IYYI G S K
Sbjct: 459 DYVTRMPEHQKNIYYITGESLKA 481
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 553 bits (1427), Expect = 0.0
Identities = 267/553 (48%), Positives = 358/553 (64%), Gaps = 95/553 (17%)
Query: 61 KAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPE 120
+E + F+AEVNRMMKLIINSLY+NKEIFLRELISNASDALDKIRL+SLTD + L N E
Sbjct: 21 MSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEE 80
Query: 121 LAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDM 180
L ++IK D+E +LH+ D+G+GMT+ +LVKNLGTIAKSGT+EFL++M++ + +++
Sbjct: 81 LTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSEL 140
Query: 181 IGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQISLEL 240
IGQFGVGFYSAFLVADKV+VT+K+N D+Q+IWESD++ FS++ DPRG+ L RGT I+L L
Sbjct: 141 IGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVL 200
Query: 241 KEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEKKVEGD 300
KEEASD+LE++T+K+L+KKYSQFINFPIY+W
Sbjct: 201 KEEASDYLELDTIKNLVKKYSQFINFPIYVW----------------------------- 231
Query: 301 EEAKVEEAEDKEEKPKTKKVDKTIWDWEQLNDNKPIWTRKPADISDEEYNEFYKAMTKDR 360
KT KT+WDWE +ND KPIW R ++ D+EY FYK+ +K+
Sbjct: 232 -------------SSKTGGGGKTVWDWELMNDIKPIWQRPSKEVEDDEYKAFYKSFSKES 278
Query: 361 TDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSFNRYGTTTD-------------------- 400
DP+ IHF AEGEVTFK++LFVP + P+ F+ YG+
Sbjct: 279 DDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITDDFHDMM 338
Query: 401 ------------------NIKNEL---KKIELKLKKVIMRNILLTIQ-----------IN 428
N+ E K+ ++K ++R L I+
Sbjct: 339 PKYLNFVKGVVDSDDLPLNVSRETLQQHKLLKVIRKKLVRKTLDMIKKIADEKYNDTFWK 398
Query: 429 VFSFSMKLGVIEDPANRSRLAKLLMFQSS-SSTEPTSLSDYVKRMKPKQDHIYYIAGASR 487
F ++KLGVIED +NR+RLAKLL FQSS ++ TSL YV+RMK KQD IY++AG+SR
Sbjct: 399 EFGTNIKLGVIEDHSNRTRLAKLLRFQSSHHPSDITSLDQYVERMKEKQDKIYFMAGSSR 458
Query: 488 KEVESSPFVERLLRKGYEILYLVEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEKME 547
KE ESSPFVERLL+KGYE++YL E VDEY + +LPEF+GK+FQN+AKEG+ +++ E
Sbjct: 459 KEAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDESEKTKE 518
Query: 548 ALKTLQLYTKSLL 560
+ + ++ + LL
Sbjct: 519 SREAIEKEFEPLL 531
Score = 222 bits (567), Expect = 2e-63
Identities = 98/148 (66%), Positives = 118/148 (79%), Gaps = 2/148 (1%)
Query: 554 LYTKSLLRGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKV 613
Y + LYVRRVFITD+F DM+PKYL+F++G+VDSDDLPLNVSRETLQQHKLLKV
Sbjct: 312 EYGSKKSDYIKLYVRRVFITDDFHDMMPKYLNFVKGVVDSDDLPLNVSRETLQQHKLLKV 371
Query: 614 IRKKLIRKALDMFKKL-DPETYKKFWAEYSTNMKLGVIEDPANRSRLAKLLMFQSS-SST 671
IRKKL+RK LDM KK+ D + FW E+ TN+KLGVIED +NR+RLAKLL FQSS +
Sbjct: 372 IRKKLVRKTLDMIKKIADEKYNDTFWKEFGTNIKLGVIEDHSNRTRLAKLLRFQSSHHPS 431
Query: 672 EPTSLSDYVKRMKPKQDHIYYIAGASRK 699
+ TSL YV+RMK KQD IY++AG+SRK
Sbjct: 432 DITSLDQYVERMKEKQDKIYFMAGSSRK 459
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET:
ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Length = 559
Score = 528 bits (1363), Expect = 0.0
Identities = 174/547 (31%), Positives = 276/547 (50%), Gaps = 107/547 (19%)
Query: 60 KKAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANP 119
K E+ F++EV +++ L+I+SLY NKEIFLRELISNASDA DK+R +L++ + + +
Sbjct: 2 KGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDG 61
Query: 120 ELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLND 179
EL +R+ D++ + L I D+G+GMT+ +++ +LGTIAKSGT FL + + D
Sbjct: 62 ELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQ--AKDSQ- 118
Query: 180 MIGQFGVGFYSAFLVADKVLVTTK---NNEDSQYIWESDAS-SFSIVNDPRGDNLKRGTQ 235
+IGQFGVGFYSAF+VADKV V T+ ++ WES +++ + + D RGT+
Sbjct: 119 LIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKED---RGTE 175
Query: 236 ISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEK 295
I+L L+E +FL+ ++ +I KYS I P+ I +
Sbjct: 176 ITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKRE--------------------- 214
Query: 296 KVEGDEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLNDNKPIWTRKPADISDEEYNEFYKA 355
+K +T+ WE++N + +WTR ++I+DEEY EFYK
Sbjct: 215 ----------------------EKDGETVISWEKINKAQALWTRNKSEITDEEYKEFYKH 252
Query: 356 MTKDRTDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSFNRYGTT-----------TDNIKN 404
+ D DPLT H EG+ + ++L++P P D +NR D+ +
Sbjct: 253 IAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDDAEQ 312
Query: 405 EL---------------------------KKIELKLKKVIMRNILLTIQ----------- 426
+ + L+ + + +L ++
Sbjct: 313 FMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAKDDAEKYQ 372
Query: 427 --INVFSFSMKLGVIEDPANRSRLAKLLMFQSSSS---TEPTSLSDYVKRMKPKQDHIYY 481
F +K G ED AN+ +AKLL F S+ + + SL DYV RMK Q+ IYY
Sbjct: 373 TFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYY 432
Query: 482 IAGASRKEVESSPFVERLLRKGYEILYLVEAVDEYTLSSLPEFEGKKFQNIAKEGLSISA 541
I S +SSP +E L +KG E+L L + +DE+ ++ L EF+GK FQ+++K S+
Sbjct: 433 ITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEK 492
Query: 542 NKEKMEA 548
++++
Sbjct: 493 LADEVDE 499
Score = 218 bits (558), Expect = 7e-63
Identities = 65/152 (42%), Positives = 91/152 (59%), Gaps = 6/152 (3%)
Query: 554 LYTKSLLRGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKV 613
++ + GL LYV+RVFI D+ +P YL F++G++DS DLPLNVSRE LQ + +
Sbjct: 288 MWNRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRN 347
Query: 614 IRKKLIRKALDMFKKL---DPETYKKFWAEYSTNMKLGVIEDPANRSRLAKLLMFQSSSS 670
+R L ++ L M +KL D E Y+ FW ++ +K G ED AN+ +AKLL F S+ +
Sbjct: 348 LRNALTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHT 407
Query: 671 ---TEPTSLSDYVKRMKPKQDHIYYIAGASRK 699
+ SL DYV RMK Q+ IYYI S
Sbjct: 408 DSSAQTVSLEDYVSRMKEGQEKIYYITADSYA 439
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A
{Escherichia coli} PDB: 2iop_A
Length = 624
Score = 529 bits (1366), Expect = 0.0
Identities = 175/547 (31%), Positives = 275/547 (50%), Gaps = 107/547 (19%)
Query: 60 KKAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANP 119
K E+ F++EV +++ L+I+SLY NKEIFLRELISNASDA DK+R +L++ + + +
Sbjct: 2 KGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDG 61
Query: 120 ELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLND 179
EL +R+ D++ + L I D+G+GMT+ +++ +LGTIAKSGT FL + + D
Sbjct: 62 ELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQ--AKDSQ- 118
Query: 180 MIGQFGVGFYSAFLVADKVLVTTK---NNEDSQYIWESDAS-SFSIVNDPRGDNLKRGTQ 235
+IGQFGVGFYSAF+VADKV V T+ ++ WES +++ + + D RGT+
Sbjct: 119 LIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKED---RGTE 175
Query: 236 ISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEK 295
I+L L+E +FL+ ++ +I KYS I P+ I +
Sbjct: 176 ITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKREEKD------------------ 217
Query: 296 KVEGDEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLNDNKPIWTRKPADISDEEYNEFYKA 355
+T+ WE++N + +WTR ++I+DEEY EFYK
Sbjct: 218 -------------------------GETVISWEKINKAQALWTRNKSEITDEEYKEFYKH 252
Query: 356 MTKDRTDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSFNRYGTT-----------TDNIKN 404
+ D DPLT H EG+ + ++L++P P D +NR D+ +
Sbjct: 253 IAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDDAEQ 312
Query: 405 EL---------------------------KKIELKLKKVIMRNILLTIQ----------- 426
+ + L+ + + +L ++
Sbjct: 313 FMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAKDDAEKYQ 372
Query: 427 --INVFSFSMKLGVIEDPANRSRLAKLLMFQSS---SSTEPTSLSDYVKRMKPKQDHIYY 481
F +K G ED AN+ +AKLL F S+ SS + SL DYV RMK Q+ IYY
Sbjct: 373 TFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYY 432
Query: 482 IAGASRKEVESSPFVERLLRKGYEILYLVEAVDEYTLSSLPEFEGKKFQNIAKEGLSISA 541
I S +SSP +E L +KG E+L L + +DE+ ++ L EF+GK FQ+++K S+
Sbjct: 433 ITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEK 492
Query: 542 NKEKMEA 548
++++
Sbjct: 493 LADEVDE 499
Score = 218 bits (558), Expect = 2e-62
Identities = 67/152 (44%), Positives = 92/152 (60%), Gaps = 6/152 (3%)
Query: 554 LYTKSLLRGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKV 613
++ + GL LYV+RVFI D+ +P YL F++G++DS DLPLNVSRE LQ + +
Sbjct: 288 MWNRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRN 347
Query: 614 IRKKLIRKALDMFKKL---DPETYKKFWAEYSTNMKLGVIEDPANRSRLAKLLMFQSS-- 668
+R L ++ L M +KL D E Y+ FW ++ +K G ED AN+ +AKLL F S+
Sbjct: 348 LRNALTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHT 407
Query: 669 -SSTEPTSLSDYVKRMKPKQDHIYYIAGASRK 699
SS + SL DYV RMK Q+ IYYI S
Sbjct: 408 DSSAQTVSLEDYVSRMKEGQEKIYYITADSYA 439
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 410 bits (1055), Expect = e-140
Identities = 171/274 (62%), Positives = 227/274 (82%), Gaps = 5/274 (1%)
Query: 58 LRKKAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDA 117
LR+K+E + F+AEVNRMMKLIINSLY+NKEIFLRELISNASDALDKIRL+SLTD + L
Sbjct: 1 LREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAG 60
Query: 118 NPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDL 177
N EL ++IK D+E +LH+ D+G+GMT+ +LVKNLGTIAKSGT+EFL++M++ +
Sbjct: 61 NEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQST 120
Query: 178 NDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQIS 237
+++IGQFGVGFYSAFLVADKV+VT+K+N D+Q+IWESD++ FS++ DPRG+ L RGT I+
Sbjct: 121 SELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTIT 180
Query: 238 LELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEKKV 297
L LKEEASD+LE++T+K+L+KKYSQFINFPIY+WSSKT V+EP+E+ E + E+
Sbjct: 181 LVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEEAAKEEKEDS-- 238
Query: 298 EGDEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLN 331
++ E E++E+KPKTKKV+KT+WDWE +N
Sbjct: 239 ---DDEAAVEEEEEEKKPKTKKVEKTVWDWELMN 269
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 391 bits (1008), Expect = e-132
Identities = 144/279 (51%), Positives = 188/279 (67%), Gaps = 13/279 (4%)
Query: 54 QLEELRKKAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDAS 113
+ + ES++++ EV R+M +I+NSLY KE+FLRELISNA+DAL+KIR LSL+D S
Sbjct: 15 YFQGPTESMESHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDES 74
Query: 114 VLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENI 173
VL +L IRI A++E +L I D+GIGMTK DL+ NLGTIAKSGT+ FL +S
Sbjct: 75 VLGEEKKLEIRISANKEKNILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKS--- 131
Query: 174 KHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDA-SSFSIVNDPRGDNLKR 232
D++ +IGQFGVGFYSAFLVADKV+V TKNN+D QYIWES A + F+I DPRG LKR
Sbjct: 132 GGDMS-LIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTADAKFTIYKDPRGATLKR 190
Query: 233 GTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKD 292
GT+ISL LKE+A++ L L DLI KYSQFI FPIY+ E + D+ ++ D
Sbjct: 191 GTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIYLLHENVYTE-EVLADIAKDMVND 249
Query: 293 EEKKVEGDEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLN 331
+ KVEE +D + KT+ V+K + W +N
Sbjct: 250 PN-----YDSVKVEETDDPNK--KTRTVEKKVKKWTLMN 281
Score = 52.2 bits (126), Expect = 2e-07
Identities = 5/41 (12%), Positives = 12/41 (29%)
Query: 328 EQLNDNKPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIH 368
E + + + ++D Y+ T D +
Sbjct: 231 ENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVE 271
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA,
NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus
familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A*
1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A*
1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Length = 236
Score = 376 bits (968), Expect = e-127
Identities = 150/229 (65%), Positives = 195/229 (85%)
Query: 58 LRKKAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDA 117
LR+K+E + F+AEVNRMMKLIINSLY+NKEIFLRELISNASDALDKIRL+SLTD + L
Sbjct: 5 LREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAG 64
Query: 118 NPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDL 177
N EL ++IK D+E +LH+ D+G+GMT+ +LVKNLGTIAKSGT+EFL++M++ +
Sbjct: 65 NEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQST 124
Query: 178 NDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQIS 237
+++IGQFGVGFYSAFLVADKV+VT+K+N D+Q+IWESD++ FS++ DPRG+ L RGT I+
Sbjct: 125 SELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTIT 184
Query: 238 LELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLE 286
L LKEEASD+LE++T+K+L+KKYSQFINFPIY+WSSKT + + D E
Sbjct: 185 LVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTGGGGKTVWDWE 233
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor
complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A*
2fwy_A* 2h55_A*
Length = 256
Score = 372 bits (957), Expect = e-125
Identities = 120/264 (45%), Positives = 172/264 (65%), Gaps = 9/264 (3%)
Query: 24 IGESREGSRTDADAPKVEKERIQLDGLNPAQLEELRKKAESYKFEAEVNRMMKLIINSLY 83
+G S + + +EE ++ E++ F+AE+ ++M LIIN+ Y
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMPEETQTQDQPMEE--EEVETFAFQAEIAQLMSLIINTFY 58
Query: 84 RNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGM 143
NKEIFLRELISN+SDALDKIR SLTD S LD+ EL I + +++++ L I+D+GIGM
Sbjct: 59 SNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGM 118
Query: 144 TKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTK 203
TKADL+ NLGTIAKSGT F+ + +I MIGQFGVGFYSA+LVA+KV V TK
Sbjct: 119 TKADLINNLGTIAKSGTKAFMEALQAGADI-----SMIGQFGVGFYSAYLVAEKVTVITK 173
Query: 204 NNEDSQYIWESDA-SSFSIVNDPRGDNLKRGTQISLELKEEASDFLEVNTLKDLIKKYSQ 262
+N+D QY WES A SF++ D G+ + RGT++ L LKE+ +++LE +K+++KK+SQ
Sbjct: 174 HNDDEQYAWESSAGGSFTVRTDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQ 232
Query: 263 FINFPIYIWSSKTIQVDEPIEDLE 286
FI +PI ++ K + ++ E
Sbjct: 233 FIGYPITLFVEKERDKEVSDDEAE 256
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding,
phosphoprotein, stress respo nucleotide-binding; HET:
RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A*
2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A*
2ygf_A* 2akp_A
Length = 220
Score = 364 bits (937), Expect = e-123
Identities = 113/222 (50%), Positives = 162/222 (72%), Gaps = 6/222 (2%)
Query: 62 AESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPEL 121
+E+++F+AE+ ++M LIIN++Y NKEIFLRE++SNASDALDKIR SL+D L+ P+L
Sbjct: 3 SETFEFQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDL 62
Query: 122 AIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMI 181
IRI E K+L I DSGIGMTKA+L+ NLGTIAKSGT F+ +S ++ MI
Sbjct: 63 FIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADV-----SMI 117
Query: 182 GQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDAS-SFSIVNDPRGDNLKRGTQISLEL 240
GQFGVGFYS FLVAD+V V +K+N+D QYIWES+A SF++ D + + RGT + L L
Sbjct: 118 GQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFL 177
Query: 241 KEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPI 282
K++ ++LE +K++IK++S+F+ +PI + +K ++ + PI
Sbjct: 178 KDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPI 219
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone
inhibitor complex; HET: 7PP; 2.20A {Homo sapiens}
Length = 239
Score = 364 bits (937), Expect = e-123
Identities = 117/232 (50%), Positives = 161/232 (69%), Gaps = 5/232 (2%)
Query: 49 GLNPAQLEELRKKAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLS 108
L P ++ ++ E++ F+AE+ ++M LIIN+ Y NKEIFLRELISNASDALDKIR S
Sbjct: 3 TLMPEEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYES 62
Query: 109 LTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMS 168
LTD S LD+ EL I I + + + L ++D+GIGMTKADL+ NLGTIAKSGT F+ +
Sbjct: 63 LTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQ 122
Query: 169 DKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGD 228
+I MIGQFGVGFYSA+LVA+KV+V TK+N+D QY WES A V G+
Sbjct: 123 AGADI-----SMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGE 177
Query: 229 NLKRGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDE 280
+ RGT++ L LKE+ +++LE +K+++KK+SQFI +PI ++ K + E
Sbjct: 178 PIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKGE 229
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug
design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP:
d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Length = 264
Score = 360 bits (927), Expect = e-121
Identities = 117/248 (47%), Positives = 171/248 (68%), Gaps = 9/248 (3%)
Query: 40 VEKERIQLDGLNPAQLEELRKKAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASD 99
+ + + + +EE ++ E++ F+AE+ ++M LIIN+ Y NKEIFLRELISN+SD
Sbjct: 25 LYDDDDKDRWGSDQPMEE--EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSD 82
Query: 100 ALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSG 159
ALDKIR +LTD S LD+ EL I + +++++ L I+D+GIGMTKADL+ NLGTIAKSG
Sbjct: 83 ALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSG 142
Query: 160 TAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDA-SS 218
T F+ + +I MIGQFGVGFYSA+LVA+KV V TK+N+D QY WES A S
Sbjct: 143 TKAFMEALQAGADI-----SMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGS 197
Query: 219 FSIVNDPRGDNLKRGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQV 278
F++ D G+ + RGT++ L LKE+ +++LE +K+++KK+SQFI +PI ++ K
Sbjct: 198 FTVRTDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDK 256
Query: 279 DEPIEDLE 286
+ ++ E
Sbjct: 257 EVSDDEAE 264
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo
sapiens} PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A*
1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A*
1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A*
2vci_A* ...
Length = 228
Score = 354 bits (910), Expect = e-119
Identities = 116/228 (50%), Positives = 164/228 (71%), Gaps = 7/228 (3%)
Query: 60 KKAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANP 119
++ E++ F+AE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTD S LD+
Sbjct: 7 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 66
Query: 120 ELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLND 179
EL I + +++++ L I+D+GIGMTKADL+ NLGTIAKSGT F+ + +I
Sbjct: 67 ELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADI-----S 121
Query: 180 MIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDA-SSFSIVNDPRGDNLKRGTQISL 238
MIGQFGVGFYSA+LVA+KV V TK+N+D QY WES A SF++ D G+ + RGT++ L
Sbjct: 122 MIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDT-GEPMGRGTKVIL 180
Query: 239 ELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLE 286
LKE+ +++LE +K+++KK+SQFI +PI ++ K + ++ E
Sbjct: 181 HLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAE 228
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A
{Escherichia coli}
Length = 235
Score = 336 bits (865), Expect = e-112
Identities = 92/223 (41%), Positives = 141/223 (63%), Gaps = 10/223 (4%)
Query: 56 EELRKKAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVL 115
K E+ F++EV +++ L+I+SLY NKEIFLRELISNASDA DK+R +L++ +
Sbjct: 18 GSHMKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLY 77
Query: 116 DANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKH 175
+ + EL +R+ D++ + L I D+G+GMT+ +++ +LGTIAKSGT FL + +
Sbjct: 78 EGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQ--AK 135
Query: 176 DLNDMIGQFGVGFYSAFLVADKVLVTTK---NNEDSQYIWESDA-SSFSIVNDPRGDNLK 231
D +IGQFGVGFYSAF+VADKV V T+ ++ WES +++ + + D
Sbjct: 136 DSQ-LIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKED--- 191
Query: 232 RGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSK 274
RGT+I+L L+E +FL+ ++ +I KYS I P+ I +
Sbjct: 192 RGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKRE 234
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics,
structura genomics consortium, SGC, stress response;
HET: AN2; 2.01A {Plasmodium falciparum}
Length = 272
Score = 291 bits (745), Expect = 8e-94
Identities = 116/260 (44%), Positives = 151/260 (58%), Gaps = 47/260 (18%)
Query: 54 QLEELRKKAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDAS 113
L E Y F+AEVN++M +I+NSLY +K++FLRELISNASDA DK R++ +
Sbjct: 16 NLYFQGSPVEKYNFKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKRIILENNKL 75
Query: 114 VLDAN------------------------------------PELAIRIKADQENKMLHII 137
+ DA +L I+IK D+E K L I
Sbjct: 76 IKDAEVVTNEEIKNETEKEKTENVNESTDKKENVEEEKNDIKKLIIKIKPDKEKKTLTIT 135
Query: 138 DSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADK 197
D+GIGM K++L+ NLGTIA+SGTA+FL Q+ + K D N +IGQFGVGFYS+FLV+++
Sbjct: 136 DNGIGMDKSELINNLGTIAQSGTAKFLKQIEEG---KADSN-LIGQFGVGFYSSFLVSNR 191
Query: 198 VLVTTKNNEDSQYIWESDAS-SFSIVNDPR-----GDNLKRGTQISLELKEEASDFLEVN 251
V V TK ED Y W SD SFS+ + D GT+I L LKEE ++LE
Sbjct: 192 VEVYTK-KEDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDY 250
Query: 252 TLKDLIKKYSQFINFPIYIW 271
LK+LIKKYS+FI FPI IW
Sbjct: 251 KLKELIKKYSEFIKFPIEIW 270
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 250 bits (640), Expect = 7e-76
Identities = 92/297 (30%), Positives = 141/297 (47%), Gaps = 52/297 (17%)
Query: 316 KTKKVDKTIWDWEQLNDNKPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEV 375
+ + +KP+WTR P D++ EEY FYKA++ D DP HF EG++
Sbjct: 2 HHHHHHSSGRENLYFQGHKPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQL 61
Query: 376 TFKAVLFVPQTQPQDSFNRYGTT------------TD----------------------- 400
F++++FVP+ P D F D
Sbjct: 62 EFRSIMFVPKRAPFDMFEPNKKRNNIKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLP 121
Query: 401 -NIKNEL---KKIELKLKKVIMRNILLTIQ------------INVFSFSMKLGVIEDPAN 444
NI E KI ++K I++ L F ++KLG+ ED AN
Sbjct: 122 LNISRENLQQNKILKVIRKNIVKKCLEMFDEVAENKEDYKQFYEQFGKNIKLGIHEDTAN 181
Query: 445 RSRLAKLLMFQSS-SSTEPTSLSDYVKRMKPKQDHIYYIAGASRKEVESSPFVERLLRKG 503
R +L +LL F S+ S E T+L DYV RMK Q IYYI G S+K++E+SPF+E+ R+G
Sbjct: 182 RKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDSKKKLETSPFIEQARRRG 241
Query: 504 YEILYLVEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEKMEALKTLQLYTKSLL 560
E+L++ E +DEY + + +FE KKF + KEG+ ++E+ + + + + L
Sbjct: 242 LEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKLC 298
Score = 225 bits (576), Expect = 1e-66
Identities = 75/143 (52%), Positives = 104/143 (72%), Gaps = 3/143 (2%)
Query: 561 RGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIR 620
+ LYVRRVFI D D+ P +L F++G+VDS+DLPLN+SRE LQQ+K+LKVIRK +++
Sbjct: 85 NNIKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVK 144
Query: 621 KALDMFKKL--DPETYKKFWAEYSTNMKLGVIEDPANRSRLAKLLMFQSS-SSTEPTSLS 677
K L+MF ++ + E YK+F+ ++ N+KLG+ ED ANR +L +LL F S+ S E T+L
Sbjct: 145 KCLEMFDEVAENKEDYKQFYEQFGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLK 204
Query: 678 DYVKRMKPKQDHIYYIAGASRKE 700
DYV RMK Q IYYI G S+K+
Sbjct: 205 DYVTRMKAGQKSIYYITGDSKKK 227
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural
genomics consortium, SGC, HE protein, chaperone; 2.28A
{Homo sapiens}
Length = 268
Score = 236 bits (605), Expect = 4e-73
Identities = 95/260 (36%), Positives = 135/260 (51%), Gaps = 52/260 (20%)
Query: 333 NKPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSF 392
KPIWTR P DI+ EEY EFYK++T D D L HF EG++ F+A+LF+P+ P D F
Sbjct: 3 TKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLF 62
Query: 393 NRYGTT------------TD------------------------NIKNEL---KKIELKL 413
D NI E+ KI +
Sbjct: 63 ENKKKKNNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVI 122
Query: 414 KKVIMRNILLTIQ------------INVFSFSMKLGVIEDPANRSRLAKLLMFQSSSS-T 460
+K I++ L FS ++KLG+ ED NR RL++LL + +S S
Sbjct: 123 RKNIVKKCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGD 182
Query: 461 EPTSLSDYVKRMKPKQDHIYYIAGASRKEVESSPFVERLLRKGYEILYLVEAVDEYTLSS 520
E TSLS+YV RMK Q IYYI G S+++V +S FVER+ ++G+E++Y+ E +DEY +
Sbjct: 183 EMTSLSEYVSRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQQ 242
Query: 521 LPEFEGKKFQNIAKEGLSIS 540
L EF+GK ++ KEGL ++
Sbjct: 243 LKEFDGKSLVSVTKEGLELA 262
Score = 231 bits (591), Expect = 5e-71
Identities = 78/143 (54%), Positives = 107/143 (74%), Gaps = 3/143 (2%)
Query: 561 RGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIR 620
+ LYVRRVFI D +++P+YL+FI+G+VDS+DLPLN+SRE LQQ K+LKVIRK +++
Sbjct: 69 NNIKLYVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVK 128
Query: 621 KALDMFKKL--DPETYKKFWAEYSTNMKLGVIEDPANRSRLAKLLMFQSS-SSTEPTSLS 677
K L++F +L D E YKKF+ +S N+KLG+ ED NR RL++LL + +S S E TSLS
Sbjct: 129 KCLELFSELAEDKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLS 188
Query: 678 DYVKRMKPKQDHIYYIAGASRKE 700
+YV RMK Q IYYI G S+++
Sbjct: 189 EYVSRMKETQKSIYYITGESKEQ 211
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator,
HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8
PDB: 1usv_A
Length = 260
Score = 232 bits (594), Expect = 1e-71
Identities = 94/254 (37%), Positives = 132/254 (51%), Gaps = 52/254 (20%)
Query: 334 KPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSFN 393
KP+WTR P+DI+ EEYN FYK+++ D DPL HF EG++ F+A+LF+P+ P D F
Sbjct: 4 KPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFE 63
Query: 394 RYGTT------------TD------------------------NIKNEL---KKIELKLK 414
TD N+ E+ KI ++
Sbjct: 64 SKKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIR 123
Query: 415 KVIMRNILLTIQ------------INVFSFSMKLGVIEDPANRSRLAKLLMFQSS-SSTE 461
K I++ ++ + FS ++KLGV ED NR+ LAKLL + S+ S E
Sbjct: 124 KNIVKKLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDE 183
Query: 462 PTSLSDYVKRMKPKQDHIYYIAGASRKEVESSPFVERLLRKGYEILYLVEAVDEYTLSSL 521
TSL+DYV RM Q +IYYI G S K VE SPF++ L K +E+L+L + +DEY + L
Sbjct: 184 LTSLTDYVTRMPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQL 243
Query: 522 PEFEGKKFQNIAKE 535
EFEGK +I K+
Sbjct: 244 KEFEGKTLVDITKD 257
Score = 229 bits (587), Expect = 1e-70
Identities = 77/143 (53%), Positives = 108/143 (75%), Gaps = 3/143 (2%)
Query: 561 RGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIR 620
+ LYVRRVFITDE D++P++LSF++G+VDS+DLPLN+SRE LQQ+K++KVIRK +++
Sbjct: 69 NNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVK 128
Query: 621 KALDMFKKL--DPETYKKFWAEYSTNMKLGVIEDPANRSRLAKLLMFQSS-SSTEPTSLS 677
K ++ F ++ D E ++KF++ +S N+KLGV ED NR+ LAKLL + S+ S E TSL+
Sbjct: 129 KLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLT 188
Query: 678 DYVKRMKPKQDHIYYIAGASRKE 700
DYV RM Q +IYYI G S K
Sbjct: 189 DYVTRMPEHQKNIYYITGESLKS 211
>1y6z_A Heat shock protein, putative; chaperone, structural genomics,
structural genom consortium, SGC, unknown function;
1.88A {Plasmodium falciparum}
Length = 263
Score = 230 bits (588), Expect = 1e-70
Identities = 61/144 (42%), Positives = 98/144 (68%), Gaps = 4/144 (2%)
Query: 561 RGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIR 620
RG+ LYV+RVFI D+F++ +P++L+F++GIVDS++LPLNV RE LQ+ K+L +I K+++
Sbjct: 71 RGIRLYVKRVFINDKFSESIPRWLTFLRGIVDSENLPLNVGREILQKSKMLSIINKRIVL 130
Query: 621 KALDMFKKL---DPETYKKFWAEYSTNMKLGVIEDPANRSRLAKLLMFQSSSS-TEPTSL 676
K++ M K L + + KF + +K+GV+ED N+ +A L+ F S +S + T L
Sbjct: 131 KSISMMKGLKETGGDKWTKFLNTFGKYLKIGVVEDKENQEEIASLVEFYSINSGDKKTDL 190
Query: 677 SDYVKRMKPKQDHIYYIAGASRKE 700
Y++ MK Q IYYI+G ++K
Sbjct: 191 DSYIENMKEDQKCIYYISGENKKT 214
Score = 228 bits (583), Expect = 6e-70
Identities = 64/259 (24%), Positives = 119/259 (45%), Gaps = 57/259 (22%)
Query: 334 KPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSFN 393
PIW + +++ +Y FYK K DPL +HF EG+++F ++L++P + P +
Sbjct: 4 LPIWKQDEKSLTENDYYSFYKNTFKAYDDPLAYVHFNVEGQISFNSILYIPGSLPWELSK 63
Query: 394 R-YGTTTDNIK------------NEL----------------------------KKIELK 412
+ + I+ +E K+
Sbjct: 64 NMFDEESRGIRLYVKRVFINDKFSESIPRWLTFLRGIVDSENLPLNVGREILQKSKMLSI 123
Query: 413 LKKVIMRNILLTIQ-------------INVFSFSMKLGVIEDPANRSRLAKLLMFQSSSS 459
+ K I+ + ++ +N F +K+GV+ED N+ +A L+ F S +S
Sbjct: 124 INKRIVLKSISMMKGLKETGGDKWTKFLNTFGKYLKIGVVEDKENQEEIASLVEFYSINS 183
Query: 460 -TEPTSLSDYVKRMKPKQDHIYYIAGASRKEVESSPFVERLLRKGYEILYLVEAVDEYTL 518
+ T L Y++ MK Q IYYI+G ++K ++SP +E+L Y++L+ +E +DE+ L
Sbjct: 184 GDKKTDLDSYIENMKEDQKCIYYISGENKKTAQNSPSLEKLKALNYDVLFSLEPIDEFCL 243
Query: 519 SSLP--EFEGKKFQNIAKE 535
SSL +++G + ++ K
Sbjct: 244 SSLTVNKYKGYEVLDVNKA 262
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 236 bits (603), Expect = 1e-70
Identities = 96/279 (34%), Positives = 142/279 (50%), Gaps = 52/279 (18%)
Query: 334 KPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSFN 393
KPIWTR P DI++EEY EFYK++T D D L HF EG++ F+A+LFVP+ P D F
Sbjct: 4 KPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFE 63
Query: 394 RYGTT------------TD------------------------NIKNEL---KKIELKLK 414
D NI E+ KI ++
Sbjct: 64 NRKKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIR 123
Query: 415 KVIMRNILLTIQ------------INVFSFSMKLGVIEDPANRSRLAKLLMFQSSSS-TE 461
K +++ L FS ++KLG+ ED NR +L++LL + +S+S E
Sbjct: 124 KNLVKKCLELFTELAEDKENYKKFYEQFSKNIKLGIHEDSQNRKKLSELLRYYTSASGDE 183
Query: 462 PTSLSDYVKRMKPKQDHIYYIAGASRKEVESSPFVERLLRKGYEILYLVEAVDEYTLSSL 521
SL DY RMK Q HIYYI G ++ +V +S FVERL + G E++Y++E +DEY + L
Sbjct: 184 MVSLKDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQL 243
Query: 522 PEFEGKKFQNIAKEGLSISANKEKMEALKTLQLYTKSLL 560
EFEGK ++ KEGL + ++E+ + + + ++L
Sbjct: 244 KEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLC 282
Score = 229 bits (585), Expect = 5e-68
Identities = 76/149 (51%), Positives = 107/149 (71%), Gaps = 3/149 (2%)
Query: 555 YTKSLLRGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVI 614
+ + LYVRRVFI D +++P+YL+FI+G+VDS+DLPLN+SRE LQQ K+LKVI
Sbjct: 63 ENRKKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVI 122
Query: 615 RKKLIRKALDMFKKL--DPETYKKFWAEYSTNMKLGVIEDPANRSRLAKLLMFQSSSS-T 671
RK L++K L++F +L D E YKKF+ ++S N+KLG+ ED NR +L++LL + +S+S
Sbjct: 123 RKNLVKKCLELFTELAEDKENYKKFYEQFSKNIKLGIHEDSQNRKKLSELLRYYTSASGD 182
Query: 672 EPTSLSDYVKRMKPKQDHIYYIAGASRKE 700
E SL DY RMK Q HIYYI G ++ +
Sbjct: 183 EMVSLKDYCTRMKENQKHIYYITGETKDQ 211
Score = 29.6 bits (67), Expect = 3.7
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 276 IQVDEPIEDLEEEAPKDEEKKVEGDEEAKVEEAEDKEEK 314
I D+P D A +E +EGD++ E D
Sbjct: 408 IDEDDPTADDTSAAVTEEMPPLEGDDDTSRMEEVDHHHH 446
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces
cerevisiae} SCOP: d.14.1.8
Length = 288
Score = 229 bits (586), Expect = 4e-70
Identities = 96/264 (36%), Positives = 136/264 (51%), Gaps = 52/264 (19%)
Query: 334 KPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSFN 393
KP+WTR P+DI+ EEYN FYK+++ D DPL HF EG++ F+A+LF+P+ P D F
Sbjct: 2 KPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFE 61
Query: 394 RYGTT------------TD------------------------NIKNEL---KKIELKLK 414
TD N+ E+ KI ++
Sbjct: 62 SKKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIR 121
Query: 415 KVIMRNILLTIQ------------INVFSFSMKLGVIEDPANRSRLAKLLMFQSS-SSTE 461
K I++ ++ + FS ++KLGV ED NR+ LAKLL + S+ S E
Sbjct: 122 KNIVKKLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDE 181
Query: 462 PTSLSDYVKRMKPKQDHIYYIAGASRKEVESSPFVERLLRKGYEILYLVEAVDEYTLSSL 521
TSL+DYV RM Q +IYYI G S K VE SPF++ L K +E+L+L + +DEY + L
Sbjct: 182 LTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQL 241
Query: 522 PEFEGKKFQNIAKEGLSISANKEK 545
EFEGK +I K+ ++EK
Sbjct: 242 KEFEGKTLVDITKDFELEETDEEK 265
Score = 226 bits (579), Expect = 5e-69
Identities = 78/149 (52%), Positives = 110/149 (73%), Gaps = 3/149 (2%)
Query: 555 YTKSLLRGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVI 614
+K + LYVRRVFITDE D++P++LSF++G+VDS+DLPLN+SRE LQQ+K++KVI
Sbjct: 61 ESKKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVI 120
Query: 615 RKKLIRKALDMFKKL--DPETYKKFWAEYSTNMKLGVIEDPANRSRLAKLLMFQSS-SST 671
RK +++K ++ F ++ D E ++KF++ +S N+KLGV ED NR+ LAKLL + S+ S
Sbjct: 121 RKNIVKKLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVD 180
Query: 672 EPTSLSDYVKRMKPKQDHIYYIAGASRKE 700
E TSL+DYV RM Q +IYYI G S K
Sbjct: 181 ELTSLTDYVTRMPEHQKNIYYITGESLKA 209
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli,
hydrolase; 1.90A {Escherichia coli}
Length = 303
Score = 229 bits (587), Expect = 4e-70
Identities = 81/266 (30%), Positives = 124/266 (46%), Gaps = 54/266 (20%)
Query: 334 KPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSFN 393
+ +WTR ++I+DEEY EFYK + D DPLT H EG+ + ++L++P P D +N
Sbjct: 3 QALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWN 62
Query: 394 RYGTT-----------TD------------------------NIKNEL---KKIELKLKK 415
R D N+ E+ + L+
Sbjct: 63 RDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRN 122
Query: 416 VIMRNILLTIQ-------------INVFSFSMKLGVIEDPANRSRLAKLLMFQSS---SS 459
+ + +L ++ F +K G ED AN+ +AKLL F S+ SS
Sbjct: 123 ALTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSS 182
Query: 460 TEPTSLSDYVKRMKPKQDHIYYIAGASRKEVESSPFVERLLRKGYEILYLVEAVDEYTLS 519
+ SL DYV RMK Q+ IYYI S +SSP +E L +KG E+L L + +DE+ ++
Sbjct: 183 AQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMN 242
Query: 520 SLPEFEGKKFQNIAKEGLSISANKEK 545
L EF+GK FQ+++K S+ +
Sbjct: 243 YLTEFDGKPFQSVSKVDESLEKLADG 268
Score = 224 bits (573), Expect = 5e-68
Identities = 67/153 (43%), Positives = 92/153 (60%), Gaps = 6/153 (3%)
Query: 554 LYTKSLLRGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKV 613
++ + GL LYV+RVFI D+ +P YL F++G++DS DLPLNVSRE LQ + +
Sbjct: 60 MWNRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRN 119
Query: 614 IRKKLIRKALDMFKKL---DPETYKKFWAEYSTNMKLGVIEDPANRSRLAKLLMFQSS-- 668
+R L ++ L M +KL D E Y+ FW ++ +K G ED AN+ +AKLL F S+
Sbjct: 120 LRNALTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHT 179
Query: 669 -SSTEPTSLSDYVKRMKPKQDHIYYIAGASRKE 700
SS + SL DYV RMK Q+ IYYI S
Sbjct: 180 DSSAQTVSLEDYVSRMKEGQEKIYYITADSYAA 212
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 229 bits (586), Expect = 1e-68
Identities = 78/149 (52%), Positives = 110/149 (73%), Gaps = 3/149 (2%)
Query: 555 YTKSLLRGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVI 614
+K + LYVRRVFITDE D++P++LSF++G+VDS+DLPLN+SRE LQQ+K++KVI
Sbjct: 61 ESKKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVI 120
Query: 615 RKKLIRKALDMFKKL--DPETYKKFWAEYSTNMKLGVIEDPANRSRLAKLLMFQSS-SST 671
RK +++K ++ F ++ D E ++KF++ +S N+KLGV ED NR+ LAKLL + S+ S
Sbjct: 121 RKNIVKKLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVD 180
Query: 672 EPTSLSDYVKRMKPKQDHIYYIAGASRKE 700
E TSL+DYV RM Q +IYYI G S K
Sbjct: 181 ELTSLTDYVTRMPEHQKNIYYITGESLKA 209
Score = 228 bits (583), Expect = 4e-68
Identities = 96/264 (36%), Positives = 136/264 (51%), Gaps = 52/264 (19%)
Query: 334 KPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSFN 393
KP+WTR P+DI+ EEYN FYK+++ D DPL HF EG++ F+A+LF+P+ P D F
Sbjct: 2 KPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFE 61
Query: 394 RYGTT------------TD------------------------NIKNEL---KKIELKLK 414
TD N+ E+ KI ++
Sbjct: 62 SKKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIR 121
Query: 415 KVIMRNILLTIQ------------INVFSFSMKLGVIEDPANRSRLAKLLMFQSS-SSTE 461
K I++ ++ + FS ++KLGV ED NR+ LAKLL + S+ S E
Sbjct: 122 KNIVKKLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDE 181
Query: 462 PTSLSDYVKRMKPKQDHIYYIAGASRKEVESSPFVERLLRKGYEILYLVEAVDEYTLSSL 521
TSL+DYV RM Q +IYYI G S K VE SPF++ L K +E+L+L + +DEY + L
Sbjct: 182 LTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQL 241
Query: 522 PEFEGKKFQNIAKEGLSISANKEK 545
EFEGK +I K+ ++EK
Sbjct: 242 KEFEGKTLVDITKDFELEETDEEK 265
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 85.7 bits (211), Expect = 2e-17
Identities = 82/583 (14%), Positives = 172/583 (29%), Gaps = 168/583 (28%)
Query: 50 LNPAQLEELRKKAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIR--LL 107
++P + E+ + + + + +R LY + ++F + +S K+R LL
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDR--------LYNDNQVFAKYNVSRL-QPYLKLRQALL 145
Query: 108 SLTDA-------------SVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLVKNLGT 154
L A + + + L+ +++ + K+ ++ + +++ L
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-FWLNLKNCNSPETVLEMLQK 204
Query: 155 IAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYS-----AFLVAD------------- 196
+ + S+ NIK ++ + + S LV
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 197 --KVLVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQISLELKEEASDFLEVNTLK 254
K+L+TT+ + D L T + L +
Sbjct: 265 SCKILLTTRFK--------------QVT-----DFLSAATTTHISLDHHSMTLTPDEVK- 304
Query: 255 DLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPK--------------------DEE 294
L+ KY +D +DL E D
Sbjct: 305 SLLLKY-----------------LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 295 KKVEGDEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLNDNKPI--------WTRKPADISD 346
K V D+ + E+ +P + K + I W
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYR--KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 347 EEYNEFYK--AMTKDRTDPLTKIH---FVAEGEVTFKAVL---FVPQTQPQDSFNRYGTT 398
N+ +K + K + I + ++ + L V +F+
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 399 TDNIKN--------ELKKIELKLKKVIMRNILLTIQINVFSFSMKLGVIEDPANRSRLAK 450
+ LK IE + + R + L F F +E K
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-----FRF------LE--------QK 506
Query: 451 LLMFQSSSSTEPTSLSDYVKRMKPKQDHIYYIAGASRKEVESSPFVERLLRKGYEILYLV 510
+ S++ S+ + ++++K + +I ++ P ERL+ IL +
Sbjct: 507 -IRHDSTAWNASGSILNTLQQLKFYKPYI----------CDNDPKYERLVN---AILDFL 552
Query: 511 EAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEKMEALKTLQ 553
++E + S K+ ++ + L EA K +Q
Sbjct: 553 PKIEENLICS-------KYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 74.1 bits (181), Expect = 1e-13
Identities = 75/496 (15%), Positives = 146/496 (29%), Gaps = 127/496 (25%)
Query: 274 KTIQVDEP--IEDLEEEAPKDEEKKVEGDEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLN 331
+ V E +++ + + +D K + EE K + W
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEID----HIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 332 DNKPIWTRKPADISDEEYNEFYKAMTKDRTDP-LTKIHFVAEGEVTFKAVLFVPQTQPQD 390
+ + + ++ Y + ++ P + ++ + + +
Sbjct: 76 EE--MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN---------Q 124
Query: 391 SFNRYGTTTDNIKNELKKIELKLKKVIMRNIL-----------LTIQI-------NVFSF 432
F +Y + +L++ L+L+ +N+L + + + F
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRP--AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 433 S---MKLGVIEDPANRSRLAKLLMFQSSSSTEPTSLSDYVKRMKPKQDHIYYIAGASRKE 489
+ L P + L L TS SD+ +K I+ I R+
Sbjct: 183 KIFWLNLKNCNSP--ETVLEMLQKLLYQIDPNWTSRSDHSSNIK---LRIHSIQAELRRL 237
Query: 490 VESSPFVERLLRKGYEILYLVEAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEKMEAL 549
++S P+ LL +L V+ + F N++ + L + K+ + L
Sbjct: 238 LKSKPYENCLL-----VLLNVQ--NAKAW--------NAF-NLSCKILLTTRFKQVTDFL 281
Query: 550 KTLQLYTKSLLRGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHK 609
SL DE +L KYL DLP RE L +
Sbjct: 282 SAATTTHISLDH-----HSMTLTPDEVKSLLLKYLD-----CRPQDLP----REVLTTNP 327
Query: 610 LL-----KVIRKKLIR-------------KALDMF-KKLDPETYKK-------------- 636
+ IR L ++ L+P Y+K
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 637 -------FWAEYSTNMKLGVIEDPANRSRLAKLLMFQSSSSTEPTSLSDYVKRMKPKQDH 689
W + + + V+ S + K Q ST S+ +K K ++
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK----QPKEST--ISIPSIYLELKVKLEN 441
Query: 690 IYYIAGASRK--ESYK 703
Y + R + Y
Sbjct: 442 EYAL---HRSIVDHYN 454
Score = 42.5 bits (99), Expect = 5e-04
Identities = 41/282 (14%), Positives = 83/282 (29%), Gaps = 78/282 (27%)
Query: 405 ELKKIELKLKKVIMRNILLTIQINVFSFSMKLGV--IEDPANRSRLAKLLMFQSSSSTEP 462
E + + + K ++ + +F ++D +S L S E
Sbjct: 10 ETGEHQYQYKDIL--------SVFEDAFVDNFDCKDVQD-MPKSIL---------SKEE- 50
Query: 463 TSLSDYVKRMKPKQDHIYYIAGASRKEVES--SPFVERLLRKGYEILYLVEAVDEYTLSS 520
D++ K + + E FVE +LR Y+ +L+ +
Sbjct: 51 ---IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK--FLMSPIKTEQRQ- 104
Query: 521 LPEFEGKKF-----------QNIAKEGLSISANKEKM-EALKTLQ------LY-----TK 557
P + + Q AK +S K+ +AL L+ + K
Sbjct: 105 -PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 558 SLL--------RGLCLYVRRVF--------ITDEFTDMLPK-YLSFIQGIVDSDDLPLNV 600
+ + + C ++F + +ML K D N+
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 601 SRETLQ-QHKLLKVIRKKLIRKALDMFKKLD----PETYKKF 637
Q +L ++++ K L + L + + F
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLV---LLNVQNAKAWNAF 262
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 5e-07
Identities = 91/652 (13%), Positives = 197/652 (30%), Gaps = 223/652 (34%)
Query: 77 LIINSLYRN----KEIFLRELISNASDALDKIRLLSLTDASVLDANP----ELAIRIKAD 128
L+ + + +E F + L T+ D P EL +
Sbjct: 21 LVPTASFFIASQLQEQFNKILPEP-------------TEGFAADDEPTTPAELVGKF--- 64
Query: 129 QENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDL---------ND 179
+ ++ + V + EF + + +I H L
Sbjct: 65 ----LGYVSSL----VEPSKVGQFDQVLNLCLTEFENCYLEGNDI-HALAAKLLQENDTT 115
Query: 180 MIGQFGV--GFYSAFLVADKVLVTTKNNEDS---QYIWESDASSFSIVNDPRGDNLKRGT 234
++ + + +A ++A + +S + + E +A +I G
Sbjct: 116 LVKTKELIKNYITARIMAKR---PFDKKSNSALFRAVGEGNAQLVAIF----------GG 162
Query: 235 QISLE--LKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKD 292
Q + + +E L+DL + Y + I E L E
Sbjct: 163 QGNTDDYFEE----------LRDLYQTYHVLVGDLI----------KFSAETLSELI--- 199
Query: 293 EEKKVEGDEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLNDNKPIWTRKPADISDEEYNEF 352
EK T+ ++ I +W L + P++ D++Y
Sbjct: 200 --------------RTTLDAEKVFTQGLN--ILEW--LEN--------PSNTPDKDY--- 230
Query: 353 YKAMTKDRTDPLTKIHFVAEGEVTFKAVLFVPQ-TQPQDSFNRYGTTTDNIKNELKKIEL 411
+ ++ ++ V Q + G T +++ LK
Sbjct: 231 -----------------LLSIPISCP-LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 412 KLKKVIM--------------RNILLTIQINVFSFSMKLGVIEDPANRSRLAKLLMFQSS 457
+ ++ ++ I + F +GV R A + ++
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITV---LFF--IGV------RCYEA----YPNT 317
Query: 458 SSTEPTSLSDYVKRMKPKQDHIYYIAGASRKEVESSPFVERL---LRKGYEI-LYLVEAV 513
S P+ L D ++ + + I+ ++++V+ +V + L G ++ + LV
Sbjct: 318 SL-PPSILEDSLENNEGVPSPMLSISNLTQEQVQD--YVNKTNSHLPAGKQVEISLVNGA 374
Query: 514 DEYTLSSLPEFEGKKFQNIAKEGLSISANKEKMEALKTLQLYTKSLLRGLCLYVRRVFIT 573
+S P+ + GL+++ K K + Q ++ R++ +
Sbjct: 375 KNLVVSGPPQ---------SLYGLNLTLRKAKAPS-GLDQ--SRIPFSE-----RKLKFS 417
Query: 574 DEFTDMLP-------KYLSFIQGIVDSDDLPLNVSRETLQQHKL------------LKVI 614
+ F LP L +++ D + NVS + L+V+
Sbjct: 418 NRF---LPVASPFHSHLLVPASDLINKDLVKNNVS---FNAKDIQIPVYDTFDGSDLRVL 471
Query: 615 RKKLIRKALDMF--KKLDPETYKKFWAEYSTNMKLG-VIE-DPANRSRLAKL 662
+ + +D + W E +T K +++ P S L L
Sbjct: 472 SGSISERIVDCIIRLPVK-------W-ETTTQFKATHILDFGPGGASGLGVL 515
Score = 44.7 bits (105), Expect = 1e-04
Identities = 52/304 (17%), Positives = 91/304 (29%), Gaps = 108/304 (35%)
Query: 316 KTKKVDKTIWD------WEQL--------NDNKPIWTRKPADISDEEYNEFYKAMT---- 357
KT K + +W+ + +N T + E Y AM
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 358 -----------KDRTDPLTKIHFVAEGEVTFKAVLFVPQ-TQPQDSFNRYGTTTDNIKNE 405
K+ + T F E K +L Q TQP +
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTF--RSE---KGLLSATQFTQP-----ALTLMEKAAFED 1746
Query: 406 LKKIELKLKKVIMRNIL-----------LTIQINVFSFSMKLGVIEDPANRSRLAKLL-- 452
LK K +I + L +V S E L +++
Sbjct: 1747 LKS-----KGLIPADATFAGHSLGEYAALASLADVMSI-------ES------LVEVVFY 1788
Query: 453 ---MFQSSSSTEPTSLSDYVKRM---KPKQDHIYYIAGASRKEVESSPFVERLLRKGYEI 506
Q + + S+Y M P + A S++ ++ VER+ ++ +
Sbjct: 1789 RGMTMQVAVPRDELGRSNY--GMIAINPGRV----AASFSQEALQY--VVERVGKRTGWL 1840
Query: 507 LYLV---------------EAVDEYTLSSLPEFEGKKFQNIAKEGLSISANKEKMEALKT 551
+ +V A+D T++++ F K Q I L S + E++E
Sbjct: 1841 VEIVNYNVENQQYVAAGDLRALD--TVTNVLNF--IKLQKIDIIELQKSLSLEEVEG--- 1893
Query: 552 LQLY 555
L+
Sbjct: 1894 -HLF 1896
Score = 42.3 bits (99), Expect = 6e-04
Identities = 76/458 (16%), Positives = 133/458 (29%), Gaps = 157/458 (34%)
Query: 46 QLDGLNPAQLEELRKKAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIR 105
Q G EELR LY+ + + +LI +++ L ++
Sbjct: 163 Q--GNTDDYFEELRD---------------------LYQTYHVLVGDLIKFSAETLSEL- 198
Query: 106 LLSLTDAS-----VLD-----ANPE-------LAIR------IKADQENKMLHIIDSG-- 140
+ + DA L+ NP L I Q + H + +
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ---LAHYVVTAKL 255
Query: 141 IGMTKADLVKNL-GTIAKSG---TAEFLSQMSDKENIKHDLNDMIGQ-FGVGF-----YS 190
+G T +L L G S TA +++ E+ + I F +G Y
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 191 AFLVADKVLVTTKNNEDSQYIWESDASS-FSIVNDPRGD--------N--LKRGTQISLE 239
+ +L EDS E S SI N + N L G Q+ +
Sbjct: 316 NTSLPPSIL------EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 240 LKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLEEEAPKDEEKKVE- 298
L VN + V P + L + K
Sbjct: 370 L---------VNG-------AKNLV-------------VSGPPQSLYGLNLTLRKAKAPS 400
Query: 299 GDEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLNDNKPIWTRKPADISDEEYNEFY--KAM 356
G +++++ + E K K L P+ + P ++ A
Sbjct: 401 GLDQSRIPFS---ERKLKF--------SNRFL----PVAS--P-------FHSHLLVPAS 436
Query: 357 TKDRTDPLTKIHFVAEGEVTFKAV-LFVPQTQPQDSFNRYGTTT-DNIKNELKKIELKLK 414
D + + V+F A + +P Y T +++ I ++
Sbjct: 437 DLINKD-------LVKNNVSFNAKDIQIPV---------YDTFDGSDLRVLSGSISERIV 480
Query: 415 KVIMRNILLTIQINVFSFSMKLGVIE-DPANRSRLAKL 451
I+R + F + +++ P S L L
Sbjct: 481 DCIIRLPVKWETTTQFKATH---ILDFGPGGASGLGVL 515
Score = 39.6 bits (92), Expect = 0.004
Identities = 43/230 (18%), Positives = 76/230 (33%), Gaps = 85/230 (36%)
Query: 7 GVAHCEDDIIEQTVDVNIGESREGSRTDADAPKVEKERIQLDGL-N----------PAQL 55
+++ + ++ V+ +T++ P +++++ L N P L
Sbjct: 340 SISNLTQEQVQDYVN----------KTNSHLP--AGKQVEI-SLVNGAKNLVVSGPPQSL 386
Query: 56 E----ELRK-KAESYKFEAEV---NRMMKLIINSLYRNKEIFLR-------ELISNASDA 100
LRK KA S ++ + R KL ++ R FL L+ ASD
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSER--KLKFSN--R----FLPVASPFHSHLLVPASDL 438
Query: 101 LD---------------KIRLLSLTDASVL-DANPELAIRIKADQ------------ENK 132
++ +I + D S L + ++ RI D + K
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI-VDCIIRLPVKWETTTQFK 497
Query: 133 MLHIIDSGIGMTK--ADLVKNL--GT---IAKSGTAEFLSQMSDKENIKH 175
HI+D G G L GT + +GT + D K
Sbjct: 498 ATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLD--INPDDDYGFKQ 545
Score = 38.5 bits (89), Expect = 0.010
Identities = 49/305 (16%), Positives = 92/305 (30%), Gaps = 110/305 (36%)
Query: 35 ADAPKVEKERIQLDGL---NPAQL------EELRKKAESYKFEAEVNRMMKLIINSLYRN 85
AD + + + NP L E+ ++ E+Y +I ++
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY---------SAMIFETIVDG 1699
Query: 86 KEIFLRELISNASDALDKIR------LLSLTD----ASVLDANPELAI--RIKAD---QE 130
K ++ ++ LLS T A L E A +K+
Sbjct: 1700 KLKT-EKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM---EKAAFEDLKSKGLIPA 1755
Query: 131 NKML--HIIDSGIG-----------MTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDL 177
+ H S +G M+ LV+ + G + ++ +
Sbjct: 1756 DATFAGH---S-LGEYAALASLADVMSIESLVE---VVFYRG--MTMQVAVPRDELGRSN 1806
Query: 178 NDMI----GQFGVGFYSAFL--VADKVLVTTK--------NNEDSQYIWESDASSFSIVN 223
MI G+ F L V ++V T N E+ QY+ A+
Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV----AA------ 1856
Query: 224 DPRGDNLKRGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIE 283
G +L + ++ L N +K ++K I+ +Q +E
Sbjct: 1857 ---------GDLRAL---DTVTNVL--NFIK--LQK----IDI-------IELQKSLSLE 1889
Query: 284 DLEEE 288
++E
Sbjct: 1890 EVEGH 1894
Score = 36.2 bits (83), Expect = 0.052
Identities = 28/151 (18%), Positives = 42/151 (27%), Gaps = 51/151 (33%)
Query: 180 MIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWE------SDASSFSIV----NDPRGDN 229
M G+ Y A V W D FSI+ N+P
Sbjct: 1631 M----GMDLYKTSKAAQDV-------------WNRADNHFKDTYGFSILDIVINNPVNLT 1673
Query: 230 LKRGTQISLELKEEASDFLEVNTLKDLIKKYSQF--INFPI--YIWSS------KTI--Q 277
+ G + ++E S + + +K F IN Y + S T Q
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1733
Query: 278 VDEP---------IEDLEEEAPKDEEKKVEG 299
P EDL+ + + G
Sbjct: 1734 ---PALTLMEKAAFEDLKSKGLIPADATFAG 1761
Score = 35.0 bits (80), Expect = 0.10
Identities = 35/202 (17%), Positives = 64/202 (31%), Gaps = 68/202 (33%)
Query: 24 IG-ESREGSRTDADAPKVEKERIQLD-----------GLNPAQLEELRKKAESYKFEAE- 70
IG E + P + ++ ++ + L Q+++ K S+ +
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 71 -----VNRMMKLII----NSLYR-NKEIFLRELISNASDALD--KI-----------RLL 107
VN L++ SLY N LR+ A LD +I R L
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGLNLT--LRKA--KAPSGLDQSRIPFSERKLKFSNRFL 421
Query: 108 SLTDA---SVL--DANPELAIRIKADQENKMLHIIDSGIGMTKADL---VKNLGTIAKSG 159
+ + S L A+ I D ++ + + D+ V + +
Sbjct: 422 PVA-SPFHSHLLVPASD----LINKD-------LVKNNVSFNAKDIQIPVYD------TF 463
Query: 160 TAEFLSQMSDKENIKHDLNDMI 181
L +S +I + D I
Sbjct: 464 DGSDLRVLSG--SISERIVDCI 483
Score = 34.6 bits (79), Expect = 0.15
Identities = 26/177 (14%), Positives = 53/177 (29%), Gaps = 77/177 (43%)
Query: 574 DEFTDMLP--------------------KYLSFIQGIVDSDDLP-----LNVS-----RE 603
++F +LP K+L ++ +V+ + LN+
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC 94
Query: 604 TLQQ---HKL---LKVIRKKLIRKALDMFKKLDPETYKKFWAEYSTNMKLGVIEDPANRS 657
L+ H L L + K ++ K Y + + D + S
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIK-----NY------ITARIMAKRPFDKKSNS 143
Query: 658 RL--------AKL-LMF--QSSSSTEPTSLSDYVKRMKPKQDHIYYIAGASRKESYK 703
L A+L +F Q ++ DY + ++ +Y ++Y
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNT-------DDYFEELR----DLY--------QTYH 181
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.4 bits (78), Expect = 0.061
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 19/75 (25%)
Query: 280 EPIEDLEEEAPKDEEKKVEGDEEAKVEEAEDKEEKPKTKKVDKTIWDW-----EQLNDNK 334
E I EE K ++ D +KV E E +E+ K + +W EQ+ NK
Sbjct: 85 ESIRKWREEQRKRLQEL---DAASKVMEQEWREKA------KKDLEEWNQRQSEQVEKNK 135
Query: 335 PIWTRKPADISDEEY 349
I+D+ +
Sbjct: 136 -----INNRIADKAF 145
Score = 30.5 bits (68), Expect = 1.4
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 9/58 (15%)
Query: 41 EKERIQ-LDGLNPAQLEELRKKAES-----YKFEAEVNRMMKLIINSLYRNKEIFLRE 92
+++R+Q LD + +E R+KA+ + ++E ++ K IN+ +K F ++
Sbjct: 94 QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE--QVEKNKINNRIADKA-FYQQ 148
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.23
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 403 KNELKKIELKLK 414
K LKK++ LK
Sbjct: 19 KQALKKLQASLK 30
Score = 27.6 bits (60), Expect = 9.4
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 12/35 (34%)
Query: 100 ALDKIRLLSLTDASV-L---DANPELAIRIKADQE 130
AL K+ AS+ L D+ P LA IKA E
Sbjct: 21 ALKKL------QASLKLYADDSAPALA--IKATME 47
>3bey_A Conserved protein O27018; TT217, NESG, structural genomics, PSI-2,
PROT structure initiative; 2.40A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 96
Score = 30.2 bits (68), Expect = 0.56
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 619 IRKALDMFKKLDPETYKKFWAEYSTNMKLGVIE 651
++ D F + PE + F G +
Sbjct: 1 MKTGADRFLEELPEVAESFKNFREAVRSEGKLT 33
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase,
phosphoprotein, transfe two-component regulatory system;
3.80A {Thermotoga maritima}
Length = 349
Score = 31.9 bits (73), Expect = 0.70
Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 26/83 (31%)
Query: 68 EAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKA 127
EA+ R+ +++IN L+ NA +A + N ++ I +
Sbjct: 239 EADRTRIKQVLIN------------LVQNAIEATGE--------------NGKIKITSED 272
Query: 128 DQENKMLHIIDSGIGMTKADLVK 150
+ + +SG + + K
Sbjct: 273 MYTKVRVSVWNSGPPIPEELKEK 295
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I
two-component histidine kinase, phosphoprotein; HET:
ADP; 2.03A {Geobacillus stearothermophilus}
Length = 244
Score = 31.4 bits (72), Expect = 0.85
Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 26/94 (27%)
Query: 57 ELRKKAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLD 116
+++ + E + + ++N ++ NA +A+
Sbjct: 107 DIQATLAPFSVIGEREKFRQCLLN------------VMKNAIEAMPN------------- 141
Query: 117 ANPELAIRIKADQENKMLHIIDSGIGMTKADLVK 150
L + + D ++ I D+G+GMTK L +
Sbjct: 142 -GGTLQVYVSIDNGRVLIRIADTGVGMTKEQLER 174
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase;
transferase, mitochondrial protein kinase, potassium;
HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1
d.122.1.4 PDB: 1gjv_A 1gkx_A*
Length = 388
Score = 31.5 bits (71), Expect = 1.1
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 90 LRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADL 148
L EL+ NA A + + P++ I I + + ++ I D G G+ DL
Sbjct: 243 LPELLKNAMRATME------SHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDL 295
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase,
two-component regulatory system; 1.57A {Thermotoga
maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Length = 152
Score = 30.2 bits (69), Expect = 1.2
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 14/56 (25%)
Query: 93 LISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADL 148
L+ NA +A + N ++ I + + + +SG + +
Sbjct: 55 LVQNAIEATGE--------------NGKIKITSEDMYTKVRVSVWNSGPPIPEELK 96
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 30.9 bits (70), Expect = 1.3
Identities = 7/44 (15%), Positives = 12/44 (27%)
Query: 279 DEPIEDLEEEAPKDEEKKVEGDEEAKVEEAEDKEEKPKTKKVDK 322
E E E E +A +E K + + +
Sbjct: 183 AEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNA 226
Score = 29.7 bits (67), Expect = 2.5
Identities = 7/48 (14%), Positives = 13/48 (27%)
Query: 275 TIQVDEPIEDLEEEAPKDEEKKVEGDEEAKVEEAEDKEEKPKTKKVDK 322
+ +E +++ E EEA E + K
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEAS 222
Score = 29.3 bits (66), Expect = 3.7
Identities = 7/44 (15%), Positives = 13/44 (29%)
Query: 279 DEPIEDLEEEAPKDEEKKVEGDEEAKVEEAEDKEEKPKTKKVDK 322
+ ++ + + E EA +E EE D
Sbjct: 182 EAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDN 225
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein,
decatenation, ATPase, drug design, DNA-binding,
magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus
shibatae}
Length = 530
Score = 30.9 bits (69), Expect = 1.7
Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 28/110 (25%)
Query: 90 LRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENK---MLHIIDSGIGMTKA 146
+RELI N+ DA D +L P + I I + + ++++D+GIG+
Sbjct: 36 VRELIENSLDATDVHGIL-----------PNIKITIDLIDDARQIYKVNVVDNGIGIPPQ 84
Query: 147 DLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVAD 196
++ G + S K+ G +G+G +A L +
Sbjct: 85 EVPNAFGRVLYSS--------------KYVNRQTRGMYGLGVKAAVLYSQ 120
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome,
ribosomal R ribosomal protein, STM1; 3.00A
{Saccharomyces cerevisiae} PDB: 3izc_s 3izs_s 3j16_G*
3o5h_M 3jyw_8
Length = 312
Score = 30.1 bits (67), Expect = 2.3
Identities = 11/62 (17%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 574 DEFTDMLPKYLSFIQGIVDSDDLP---LNVSRETLQQHKLLKVIRKKLIRKALDMFKKLD 630
+ + L +Y S +V D++ ++ R+ L+ ++ + + ++R+A+ F
Sbjct: 13 AKLREYLEEYKSL--FVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDL 70
Query: 631 PE 632
P+
Sbjct: 71 PD 72
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MSE; 1.83A {Planctomyces limnophilus}
Length = 259
Score = 29.6 bits (65), Expect = 3.3
Identities = 8/69 (11%), Positives = 21/69 (30%), Gaps = 4/69 (5%)
Query: 482 IAGASRKEVESSPFVERLLRKGYEILYLVEAVDEYTLSSLPEFEGKKFQNIAKEGLSISA 541
G + E + + +E Y+ V L + + + E ++
Sbjct: 9 YCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILSDYPAERMT--- 65
Query: 542 NKEKMEALK 550
+ ++ L
Sbjct: 66 -AQAIDQLV 73
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 29.3 bits (65), Expect = 3.5
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 21/83 (25%)
Query: 280 EPIEDLEEEAPKDEEKKVEGDEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLNDNKPIWTR 339
EP E++ E P +E E ++ + D+ K T WD +K + +
Sbjct: 169 EPFENIAIELPPNEILFSENNDMDNNNDGVDELNKK------CTFWD----AISKLYYVQ 218
Query: 340 KPADISDEEYNEFYKAMTKDRTD 362
F+K +++ D
Sbjct: 219 F-----------FFKQAEQEQAD 230
>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp
complex, tethering, transport protein; 1.7A {Homo
sapiens} PDB: 3kxc_C* 2cfh_C*
Length = 160
Score = 28.7 bits (64), Expect = 4.0
Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
Query: 480 YYIAGASRKEVESSPFVERLLRKGYEI-LYLVEAVDEYTLSSLPEFEGKKFQNIAKEGLS 538
A + EVE+ + +L G+ + L+E + T E + KF I K+ +
Sbjct: 19 GVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDIMKF--ICKDFWT 76
Query: 539 ISANKEKMEALKTLQLYTKSLLRGLCLYVRRVFITDEFTDMLPKYLSFIQGIV 591
K+ ++ L+T L + ++ ++ + KYL+F G++
Sbjct: 77 TVFKKQ-IDNLRTNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLI 128
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation,
transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A*
2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Length = 394
Score = 29.4 bits (65), Expect = 4.6
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 90 LRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADL 148
L EL NA A ++ P + + + +E+ + + D G G+ +
Sbjct: 236 LFELFKNAMRA-------TVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKI 287
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 317
Score = 28.6 bits (63), Expect = 6.6
Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 574 DEFTDMLPKYLSFIQGIVDSDDLP---LNVSRETLQQHKLLKVIRKKLIRKALDMFKKLD 630
+ +L Y IV +D++ + R +L+ ++ + + ++RKA+ + +
Sbjct: 15 LKIIQLLDDYPKC--FIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENN 72
Query: 631 PETYK 635
P K
Sbjct: 73 PALEK 77
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix
two-turns helix; 2.00A {Sulfolobus shibatae} SCOP:
a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A*
1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Length = 471
Score = 29.0 bits (64), Expect = 6.6
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 14/62 (22%)
Query: 90 LRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENK---MLHIIDSGIGMTKA 146
+RELI N+ DA D +L P + I I + + ++++D+GIG+
Sbjct: 37 VRELIENSLDATDVHGIL-----------PNIKITIDLIDDARQIYKVNVVDNGIGIPPQ 85
Query: 147 DL 148
++
Sbjct: 86 EV 87
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal
transduction inhibitor, KIT regula phosphotyrosine,
signaling protein; HET: PTR; 1.45A {Homo sapiens}
Length = 141
Score = 27.8 bits (62), Expect = 6.8
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 10/65 (15%)
Query: 459 STEPTSLSDYVKRMKPKQDHIYYIAGASRKEVESSPFVERLLRKGYEILYLV----EAVD 514
S+ P ++ + +K +Y +R E E L + +LV +
Sbjct: 5 SSGPMDVTSLTEELKKLAKQGWYWGPITRWE------AEGKLANVPDGSFLVRDSSDDRY 58
Query: 515 EYTLS 519
+LS
Sbjct: 59 LLSLS 63
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 28.3 bits (63), Expect = 7.6
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 273 SKTIQVDEPIEDLEEEAPKDEEKKVEGDEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLND 332
+T + P++ E++V EEA EEA ++E K + + +W + N
Sbjct: 190 DRTQPWSIMPDLYFYRDPEEVEQQVA--EEATTEEAGEEEAKEEVTEEQAEATEWAEENA 247
Query: 333 NKPIW 337
+ W
Sbjct: 248 DNVEW 252
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase;
4.00A {Methanosarcina mazei}
Length = 621
Score = 28.6 bits (63), Expect = 8.8
Identities = 31/200 (15%), Positives = 66/200 (33%), Gaps = 50/200 (25%)
Query: 56 EELRKKAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVL 115
E K + F++ ++ + + NA DA ++ +L
Sbjct: 20 EFFEKNRQILGFDSAPRSLITTVKE------------AVDNALDACEEAGIL-------- 59
Query: 116 DANPELAIRI-KADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIK 174
P++ +++ + + + I D+G G+ + + K + L Q
Sbjct: 60 ---PDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSR------ 110
Query: 175 HDLNDMIGQFGVG-----FYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGDN 229
GQ G+G Y+ + +K + + + + S N+P
Sbjct: 111 -------GQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTS-TNEPDILV 162
Query: 230 LKR-------GTQISLELKE 242
+ GTQI LE++
Sbjct: 163 DEVRDWFRPHGTQIELEMRA 182
>2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD;
2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A*
2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A*
1hl8_A* 1odu_A* 2wsp_A*
Length = 455
Score = 28.5 bits (63), Expect = 9.1
Identities = 12/105 (11%), Positives = 29/105 (27%), Gaps = 4/105 (3%)
Query: 299 GDEEAKVEEAEDKEEKPKTKKVDKTIWDWEQLNDNKPIWTRKPADISDEEYNEFYKAMTK 358
+ + + ++ ++ + EY +F T
Sbjct: 43 WATPTGELGKVPMDAWFFQNPYAEWYENSLRIKESPTWEYHVKTYGENFEYEKFADLFTA 102
Query: 359 DRTDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSFNRYGTTTDNIK 403
++ DP + + +P T+ D F +GT +
Sbjct: 103 EKWDPQEWADLFKKAGAKY----VIPTTKHHDGFCLWGTKYTDFN 143
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.360
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,431,332
Number of extensions: 646538
Number of successful extensions: 1662
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1553
Number of HSP's successfully gapped: 118
Length of query: 704
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 604
Effective length of database: 3,909,693
Effective search space: 2361454572
Effective search space used: 2361454572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (27.8 bits)