RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13233
(704 letters)
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId:
9615]}
Length = 227
Score = 231 bits (591), Expect = 3e-72
Identities = 147/224 (65%), Positives = 190/224 (84%)
Query: 63 ESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELA 122
E + F+AEVNRMMKLIINSLY+NKEIFLRELISNASDALDKIRL+SLTD + L N EL
Sbjct: 1 EKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELT 60
Query: 123 IRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIG 182
++IK D+E +LH+ D+G+GMT+ +LVKNLGTIAKSGT+EFL++M++ + +++IG
Sbjct: 61 VKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIG 120
Query: 183 QFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQISLELKE 242
QFGVGFYSAFLVADKV+VT+K+N D+Q+IWESD++ FS++ DPRG+ L RGT I+L LKE
Sbjct: 121 QFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKE 180
Query: 243 EASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQVDEPIEDLE 286
EASD+LE++T+K+L+KKYSQFINFPIY+WSSKT + + D E
Sbjct: 181 EASDYLELDTIKNLVKKYSQFINFPIYVWSSKTGGGGKTVWDWE 224
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}
Length = 208
Score = 203 bits (516), Expect = 1e-61
Identities = 112/212 (52%), Positives = 152/212 (71%), Gaps = 5/212 (2%)
Query: 63 ESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELA 122
E++ F+AE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTD S LD+ EL
Sbjct: 2 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELH 61
Query: 123 IRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIG 182
I + +++++ L I+D+GIGMTKADL+ NLGTIAKSGT F+ + MIG
Sbjct: 62 INLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQA-----GADISMIG 116
Query: 183 QFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQISLELKE 242
QFGVGFYSA+LVA+KV V TK+N+D QY WES A V G+ + RGT++ L LKE
Sbjct: 117 QFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLKE 176
Query: 243 EASDFLEVNTLKDLIKKYSQFINFPIYIWSSK 274
+ +++LE +K+++KK+SQFI +PI ++ K
Sbjct: 177 DQTEYLEERRIKEIVKKHSQFIGYPITLFVEK 208
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 213
Score = 200 bits (510), Expect = 1e-60
Identities = 102/217 (47%), Positives = 149/217 (68%), Gaps = 6/217 (2%)
Query: 62 AESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPEL 121
+E+++F+AE+ ++M LIIN++Y NKEIFLRELISNASDALDKIR SL+D L+ P+L
Sbjct: 2 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDL 61
Query: 122 AIRIKADQENKMLHIIDSGIGMTKADLVKNLGTIAKSGTAEFLSQMSDKENIKHDLNDMI 181
IRI E K+L I DSGIGMTKA+L+ NLGTIAKSGT F+ + MI
Sbjct: 62 FIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEAL-----SAGADVSMI 116
Query: 182 GQFGVGFYSAFLVADKV-LVTTKNNEDSQYIWESDASSFSIVNDPRGDNLKRGTQISLEL 240
GQFGVGFYS FLVAD+V +++ N+++ + SF++ D + + RGT + L L
Sbjct: 117 GQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFL 176
Query: 241 KEEASDFLEVNTLKDLIKKYSQFINFPIYIWSSKTIQ 277
K++ ++LE +K++IK++S+F+ +PI + +K ++
Sbjct: 177 KDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVE 213
>d1usua_ d.14.1.8 (A:) Heat shock protein hsp82 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 256
Score = 164 bits (417), Expect = 8e-47
Identities = 90/255 (35%), Positives = 131/255 (51%), Gaps = 54/255 (21%)
Query: 334 KPIWTRKPADISDEEYNEFYKAMTKDRTDPLTKIHFVAEGEVTFKAVLFVPQTQPQDSFN 393
KP+WTR P+DI+ EEYN FYK+++ D DPL HF EG++ F+A+LF+P+ P D F
Sbjct: 3 KPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFE 62
Query: 394 RYGTTTDNIKNELKKIEL----------------------------------------KL 413
+NIK ++++ + +
Sbjct: 63 SK-KKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVI 121
Query: 414 KKVIMRNILLTIQ------------INVFSFSMKLGVIEDPANRSRLAKLL-MFQSSSST 460
+K I++ ++ + FS ++KLGV ED NR+ LAKLL + S
Sbjct: 122 RKNIVKKLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVD 181
Query: 461 EPTSLSDYVKRMKPKQDHIYYIAGASRKEVESSPFVERLLRKGYEILYLVEAVDEYTLSS 520
E TSL+DYV RM Q +IYYI G S K VE SPF++ L K +E+L+L + +DEY +
Sbjct: 182 ELTSLTDYVTRMPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQ 241
Query: 521 LPEFEGKKFQNIAKE 535
L EFEGK +I K+
Sbjct: 242 LKEFEGKTLVDITKD 256
Score = 126 bits (317), Expect = 4e-33
Identities = 76/143 (53%), Positives = 106/143 (74%), Gaps = 3/143 (2%)
Query: 561 RGLCLYVRRVFITDEFTDMLPKYLSFIQGIVDSDDLPLNVSRETLQQHKLLKVIRKKLIR 620
+ LYVRRVFITDE D++P++LSF++G+VDS+DLPLN+SRE LQQ+K++KVIRK +++
Sbjct: 68 NNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVK 127
Query: 621 KALDMFKKL--DPETYKKFWAEYSTNMKLGVIEDPANRSRLAKLL-MFQSSSSTEPTSLS 677
K ++ F ++ D E ++KF++ +S N+KLGV ED NR+ LAKLL + S E TSL+
Sbjct: 128 KLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLT 187
Query: 678 DYVKRMKPKQDHIYYIAGASRKE 700
DYV RM Q +IYYI G S K
Sbjct: 188 DYVTRMPEHQKNIYYITGESLKS 210
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon
Sulfolobus shibatae [TaxId: 2286]}
Length = 219
Score = 34.0 bits (77), Expect = 0.035
Identities = 28/178 (15%), Positives = 59/178 (33%), Gaps = 24/178 (13%)
Query: 90 LRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLV 149
+RELI N+ DA D +L ++ I ++ ++++D+GIG+ ++
Sbjct: 27 VRELIENSLDATDVHGILPNIKITI--------DLIDDARQIYKVNVVDNGIGIPPQEVP 78
Query: 150 KNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQ 209
G + S N + +G YS + + T +
Sbjct: 79 NAFGRVL---------YSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKR 129
Query: 210 YIWESDASSFSIVNDPRG------DNLKRGTQISLELKEEASDFLEVNTLKDLIKKYS 261
I+ N+P +N + S+ + + + + IK+
Sbjct: 130 -IYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKAKSRIYEYIKRTY 186
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat
(Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Length = 190
Score = 31.6 bits (71), Expect = 0.23
Identities = 17/138 (12%), Positives = 44/138 (31%), Gaps = 27/138 (19%)
Query: 15 IIEQTVDVN--IGESREGSRTDADAPKVEKERIQLDGLNPAQLEELRKKAESYKFEAEVN 72
I+ V+ + ++ + ++ D + +++ Q + +
Sbjct: 6 SIDPNCSVSDVVKDAYDMAKLLCDKYYMASPDLEI------QEVNATNATQPIHMVYVPS 59
Query: 73 RMMKLIINSLYRNKEIFLRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENK 132
+ ++ L NA A + SLT P + I + +E+
Sbjct: 60 HLYHMLFE------------LFKNAMRATVESHESSLTL-------PPIKIMVALGEEDL 100
Query: 133 MLHIIDSGIGMTKADLVK 150
+ + D G G+ + +
Sbjct: 101 SIKMSDRGGGVPLRKIER 118
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 29.0 bits (64), Expect = 1.4
Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 26/126 (20%)
Query: 90 LRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADLV 149
++EL+ N+ DA A+ +D +++K D ++ + D+G G+ + +
Sbjct: 11 VKELVENSLDA----------GATNID------LKLK-DYGVDLIEVSDNGCGVEEENFE 53
Query: 150 KNLGTIAKSGTAEFLSQMSDKENIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQ 209
S EF + G G S ++D + T +
Sbjct: 54 GLTLKHHTSKIQEFADLTQVET---------FGFRGEALSSLCALSDVTISTCHASAKVG 104
Query: 210 YIWESD 215
D
Sbjct: 105 TRLMFD 110
>d1dk0a_ d.35.1.1 (A:) Heme-binding protein A (HasA) {Serratia
marcescens [TaxId: 615]}
Length = 173
Score = 27.8 bits (62), Expect = 2.9
Identities = 17/142 (11%), Positives = 47/142 (33%), Gaps = 29/142 (20%)
Query: 172 NIKHDLNDMIGQFGVGFYSAFLVADKVLVTTKNNEDSQYIWESDASSFSIVNDPR----- 226
++ H ++ GFY L + +++ N+ + ++ + ++++ N+P
Sbjct: 28 DVNHTNGNVTDANSGGFYGGSLSGSQYAISSTANQVTAFVAGGNL-TYTLFNEPAHTLYG 86
Query: 227 -------GDNLKRGTQISLELKEEASDFLEVNTLKDLIKKYSQFINFPIY---------- 269
GD L G ++ F +N + + ++ +Y
Sbjct: 87 QLDSLSFGDGLSGGDTSPYSIQVPDVSFGGLNLSSLQAQGHDGVVHQVVYGLMSGDTGAL 146
Query: 270 ------IWSSKTIQVDEPIEDL 285
I + V+ + +
Sbjct: 147 ETALNGILDDYGLSVNSTFDQV 168
>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId:
5691]}
Length = 383
Score = 28.2 bits (61), Expect = 3.5
Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 12/102 (11%)
Query: 244 ASDFLEVNTLKDLIKKYSQFINFPIY-IWSSKTIQVDEPIEDLEEEAPKDEEKKVEGDEE 302
AS + + + + F ++ + +S+ V E IE + + G E
Sbjct: 279 ASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIEVARKTTGHPIPVRECGRRE 338
Query: 303 AKVEEAED-----KEE---KPKT---KKVDKTIWDWEQLNDN 333
+E KPK + + +T W +++ + N
Sbjct: 339 GDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTHPN 380
>d2geya1 d.17.4.9 (A:2-145) Putative hydroxylase AclR {Streptomyces
galilaeus [TaxId: 33899]}
Length = 144
Score = 27.2 bits (59), Expect = 3.6
Identities = 8/47 (17%), Positives = 17/47 (36%)
Query: 615 RKKLIRKALDMFKKLDPETYKKFWAEYSTNMKLGVIEDPANRSRLAK 661
RK L + + + + D K W+ + A+ +L +
Sbjct: 5 RKALCLEMVAAWNRWDLSGIIKHWSPDIVHYSEDNEVSSADMVKLME 51
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853
{Thermotoga maritima [TaxId: 2336]}
Length = 161
Score = 27.2 bits (60), Expect = 4.9
Identities = 22/118 (18%), Positives = 53/118 (44%), Gaps = 21/118 (17%)
Query: 39 KVEKERIQLDGLNPAQLEELRKKAESYK----FEAEVNRMMKLIINSLYRNKEIFLRELI 94
++ +E++ L L + + +++ A S+ FE+ V ++ I+ R +++ L L+
Sbjct: 1 QINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPT-RIRQVLL-NLL 58
Query: 95 SNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHII--DSGIGMTKADLVK 150
+N K P+ +++ D+++ + II D+GIG+ +
Sbjct: 59 NNGVKYSKK-------------DAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDR 103
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 148
Score = 26.4 bits (58), Expect = 8.8
Identities = 12/110 (10%), Positives = 30/110 (27%), Gaps = 21/110 (19%)
Query: 41 EKERIQLDGLNPAQLEELRKKAESYKFEAEVNRMMKLIINSLYRNKEIFLRELISNASDA 100
+ + + L + + + II L + + I+NA
Sbjct: 2 DHVPVDITDLLDRAAHDAARIYPDLDVSLVPSP--TCIIVGLPAGLRLAVDNAIANA--- 56
Query: 101 LDKIRLLSLTDASVLDANPELAIRIKADQENKMLHII--DSGIGMTKADL 148
+ +++ A + I D+G G+ + +
Sbjct: 57 --------------VKHGGATLVQLSAVSSRAGVEIAIDDNGSGVPEGER 92
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor
EnvZ {Escherichia coli [TaxId: 562]}
Length = 161
Score = 26.4 bits (58), Expect = 8.8
Identities = 6/59 (10%), Positives = 15/59 (25%), Gaps = 16/59 (27%)
Query: 90 LRELISNASDALDKIRLLSLTDASVLDANPELAIRIKADQENKMLHIIDSGIGMTKADL 148
+ ++ NA+ N + + + + D G G+
Sbjct: 52 VANMVVNAARY----------------GNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQR 94
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.360
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,526,223
Number of extensions: 123904
Number of successful extensions: 367
Number of sequences better than 10.0: 1
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 26
Length of query: 704
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 612
Effective length of database: 1,144,436
Effective search space: 700394832
Effective search space used: 700394832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.5 bits)